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2024-05-06 10:17:50

Gene list

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COG category: Cell wall/membrane biogenesis
Organism: Xanthomonas oryzae pv. oryzae KACC10331, KACC10331

Number of genes found: 220

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Xanthomonas oryzae pv. oryzae KACC10331, KACC10331
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA XOO1638 conserved hypothetical proteinchromosome CDS1693525 2895 + 0.630397
NA XOO2115 conserved hypothetical proteinchromosome CDS2213031 765 - 0.68366
NA XOO0923 glycosyltransferasechromosome CDS953663 882 + 0.702948
NA XOO2684 peptidasechromosome CDS2847608 900 + 0.651111
NA XOO1878 conserved hypothetical proteinchromosome CDS1980684 636 - 0.657233
NA XOO4268 conserved hypothetical proteinchromosome CDS4542623 1098 + 0.704007
NA XOO0780 putative glycosyltransferasechromosome CDS795477 1986 + 0.53424
NA XOO1014 conserved hypothetical proteinchromosome CDS1036273 504 - 0.599206
NA XOO1577 RhsD protein precursorchromosome CDS1608522 4491 + 0.560454
NA XOO2302 conserved hypothetical proteinchromosome CDS2439222 306 + 0.581699
NA XOO0591 conserved hypothetical proteinchromosome CDS615997 1059 + 0.671388
NA XOO4101 conserved hypothetical proteinchromosome CDS4381905 1533 + 0.647097
NA XOO2036 outer membrane component of multidrug efflux pumpchromosome CDS2137919 927 - 0.656958
NA XOO4305 conserved hypothetical proteinchromosome CDS4583262 1818 + 0.633663
NA XOO1527 OmpA family proteinchromosome CDS1558374 726 + 0.630854
NA XOO4100 N-acetylmuramoyl-L-alanine amidasechromosome CDS4380995 1005 - 0.654726
NA XOO0416 Membrane-fusion proteinchromosome CDS422925 471 + 0.566879
NA XOO3019 unknown proteinchromosome CDS3239738 1113 - 0.672956
NA XOO3618 xylanasechromosome CDS3881275 1173 - 0.626598
NA XOO1836 conserved hypothetical proteinchromosome CDS1935819 399 + 0.636591
NA XOO2597 conserved hypothetical proteinchromosome CDS2747247 624 + 0.599359
NA XOO2994 aminotransferasechromosome CDS3203828 1125 - 0.631111
NA XOO0044 conserved hypothetical proteinchromosome CDS44160 177 + 0.638418
NA XOO3395 RND efflux membrane fusion proteinchromosome CDS3617706 957 - 0.653083
NA XOO2185 epimerase; dehydratase proteinchromosome CDS2295421 1908 + 0.624738
NA XOO0663 conserved hypothetical proteinchromosome CDS683401 864 - 0.655093
NA XOO4099 D-alanyl-D-alanine dipeptidasechromosome CDS4380156 747 - 0.633199
NA XOO3515 Outer membrane protein and related peptidoglycan-associated (lipo)proteinschromosome CDS3780021 819 - 0.659341
NA XOO1911 conserved hypothetical proteinchromosome CDS2014368 1071 - 0.648926
NA XOO1413 peptidasechromosome CDS1443933 732 - 0.668033
NA XOO1812 conserved hypothetical proteinchromosome CDS1906697 936 - 0.629274
NA XOO4453 conserved hypothetical proteinchromosome CDS4742580 354 - 0.641243
NA XOO1772 Membrane-fusion proteinchromosome CDS1854236 1416 + 0.641949
NA XOO0461 dolichyl-phosphate mannose synthase related proteinchromosome CDS469890 822 - 0.677616
NA XOO3682 non-hemolytic phospholipase Cchromosome CDS3942989 1977 - 0.631765
NA XOO1816 conserved hypothetical proteinchromosome CDS1910370 2361 - 0.668784
NA XOO3068 conserved hypothetical proteinchromosome CDS3300149 423 + 0.699764
NA XOO1072 conserved hypothetical proteinchromosome CDS1094991 1881 + 0.656034
NA XOO3292 conserved hypothetical proteinchromosome CDS3524817 750 + 0.661333
NA XOO0403 conserved hypothetical proteinchromosome CDS410140 435 - 0.703448
NA XOO2992 glycosyl transferasechromosome CDS3201631 951 - 0.642482
NA XOO1636 conserved hypothetical proteinchromosome CDS1687203 4140 + 0.639855
NA XOO2986 glycosyltransferasechromosome CDS3195286 1200 - 0.661667
NA XOO0671 conserved hypothetical proteinchromosome CDS690901 609 - 0.617406
NA XOO0590 lipopolysaccharide core biosynthesis glycosyl transferasechromosome CDS615172 825 - 0.65697
NA XOO0976 membrane proteinchromosome CDS1007507 1179 - 0.638677
NA XOO3321 TonB-like proteinchromosome CDS3554463 972 + 0.636831
NA XOO0413 Membrane-fusion proteinchromosome CDS421382 333 + 0.603604
NA XOO3819 peptidasechromosome CDS4072708 978 - 0.652352
NA XOO0523 conserved hypothetical proteinchromosome CDS545745 228 + 0.618421
NA XOO2114 TonB-like proteinchromosome CDS2212203 699 - 0.655222
NA XOO4569 conserved hypothetical proteinchromosome CDS4866526 1395 + 0.683154
NA XOO0924 membrane proteinchromosome CDS954525 1335 + 0.666667
NA XOO2286 RhsD proteinchromosome CDS2417310 4110 - 0.633333
NA XOO4006 conserved hypothetical proteinchromosome CDS4277809 801 + 0.639201
NA XOO3291 lipoproteinchromosome CDS3524096 612 + 0.673203
NA XOO0390 TonB-like proteinchromosome CDS393541 1023 - 0.687195
NA XOO4535 RTS beta proteinchromosome CDS4833321 1320 - 0.667424
NA XOO3000 cytochrome Cchromosome CDS3208837 1428 + 0.642157
NA XOO1888 conserved hypothetical proteinchromosome CDS1992150 669 - 0.587444
NA XOO4004 outer membrane lipoproteinchromosome CDS4275379 798 + 0.641604
NA XOO1561 conserved hypothetical proteinchromosome CDS1593586 837 + 0.664277
NA XOO2849 conserved hypothetical proteinchromosome CDS3057632 798 + 0.620301
NA XOO0404 conserved hypothetical proteinchromosome CDS410644 489 - 0.711656
NA XOO2334 phospholipasechromosome CDS2471584 1218 + 0.630542
NA XOO2631 Rhs family proteinchromosome CDS2789820 5241 - 0.600076
NA XOO1178 conserved hypothetical proteinchromosome CDS1203825 717 - 0.62622
NA XOO0123 Rhs family proteinchromosome CDS124816 816 + 0.552696
NA XOO0903 unknown proteinchromosome CDS933669 714 + 0.680672
NA XOO0288 transglycolase; epimerasechromosome CDS296965 2319 + 0.693834
NA XOO3523 conserved hypothetical proteinchromosome CDS3792725 798 + 0.66416
NA XOO1639 conserved hypothetical proteinchromosome CDS1697836 3006 + 0.667332
NA XOO0589 conserved hypothetical proteinchromosome CDS613697 1278 + 0.659624
NA XOO0104 conserved hypothetical proteinchromosome CDS95104 2664 + 0.643018
NA XOO3869 conserved hypothetical proteinchromosome CDS4131221 1101 - 0.64941
NA XOO0588 conserved hypothetical proteinchromosome CDS611811 1722 + 0.670732
NA XOO1302 nucleotidyl transferasechromosome CDS1331822 711 - 0.632911
NA XOO2550 hypothetical proteinchromosome CDS2699982 402 + 0.641791
NA XOO2985 hexosyltransferasechromosome CDS3194177 1113 - 0.651393
NA XOO1969 conserved hypothetical proteinchromosome CDS2070871 1347 - 0.657758
NA XOO4063 conserved hypothetical proteinchromosome CDS4347723 354 - 0.700565
NA XOO0513 conserved hypothetical proteinchromosome CDS529489 1419 - 0.649049
NA XOO0524 conserved hypothetical proteinchromosome CDS545985 210 + 0.657143
NA XOO2897 conserved hypothetical proteinchromosome CDS3108184 228 - 0.596491
NA XOO0118 conserved hypothetical proteinchromosome CDS118012 681 + 0.653451
NA XOO3536 conserved hypothetical proteinchromosome CDS3803723 1734 + 0.670704
NA XOO2549 hypothetical proteinchromosome CDS2699315 369 + 0.628726
NA XOO4329 oxidoreductasechromosome CDS4609016 879 + 0.683731
acrA XOO2804 multidrug resistance proteinchromosome CDS2986509 1305 + 0.688889
acrE XOO0154 acriflavin resistance proteinchromosome CDS153773 1254 + 0.665072
alr XOO0694 alanine racemasechromosome CDS715159 1101 + 0.683015
amiC XOO2368 N-acetylmuramoyl-L-alanine amidasechromosome CDS2513121 1197 - 0.659148
amiC XOO2733 N-acetylmuramoyl-L-alanine amidasechromosome CDS2894908 1734 - 0.67128
betT XOO3886 high-affinity choline transportchromosome CDS4148249 474 + 0.622363
betT XOO3887 high-affinity choline transportchromosome CDS4148695 165 + 0.618182
blc XOO4437 outer membrane lipoprotein Blcchromosome CDS4731378 297 + 0.599327
blc XOO0274 outer membrane lipoprotein; lipocalinchromosome CDS285317 756 - 0.595238
blc XOO3161 outer membrane lipoprotein Blcchromosome CDS3395240 603 + 0.6733
blc XOO4438 outer membrane lipoprotein Blcchromosome CDS4731671 261 + 0.632184
cdh XOO4216 NAD(P)H steroid dehydrogenasechromosome CDS4495030 1209 + 0.646816
cfaA XOO1914 cyclopropane-fatty-acyl-phospholipid synthasechromosome CDS2016777 2265 - 0.645475
ctp XOO4586 carboxyl-terminal proteasechromosome CDS4886975 1539 - 0.673164
czcA XOO2377 cation efflux system proteinchromosome CDS2523399 4575 + 0.646995
czcB XOO2376 cation efflux system proteinchromosome CDS2522144 1263 + 0.661124
czcB XOO2644 cation efflux system proteinchromosome CDS2808628 753 - 0.645418
czcB XOO2643 cation efflux system proteinchromosome CDS2808247 363 - 0.652893
dacC XOO3956 penicillin-binding protein 6chromosome CDS4224373 1206 - 0.644279
dapA XOO3137 dihydrodipicolinate synthetasechromosome CDS3372856 909 - 0.657866
dapA XOO2923 dihydroxydipicolinate synthasechromosome CDS3132261 1638 - 0.649573
ddlB XOO0352 D-alanine-D-alanine ligase Achromosome CDS367772 1044 + 0.641762
ddlB XOO3824 D-alanine-D-alanine ligase Bchromosome CDS4079156 957 - 0.649948
dgkA XOO3757 diacylglycerol kinasechromosome CDS4010658 369 - 0.653117
dgoA XOO2919 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3-deoxyphosphogluconate aldolasechromosome CDS3128267 1149 + 0.645779
dniR XOO3266 membrane-bound lytic murein transglycosylase D precursorchromosome CDS3503165 1641 - 0.660573
dniR XOO1038 murein hydrolase Dchromosome CDS1058121 1185 - 0.651477
dpm1 XOO0501 dolichol-phosphate mannosyltransferasechromosome CDS519324 807 - 0.644362
flgJ XOO2578 flagellar proteinchromosome CDS2728359 1179 + 0.660729
ftsI XOO3831 penicillin-binding protein 3chromosome CDS4088301 1878 - 0.653887
galU XOO2186 UTP-glucose-1-phosphate uridylyltransferasechromosome CDS2297328 894 + 0.604027
gidB XOO4556 glucose inhibited division protein Bchromosome CDS4855531 831 + 0.677497
glmS XOO3917 glucosamine-fructose-6-phosphateaminotransferasechromosome CDS4178572 1029 - 0.659864
glmS XOO0746 glucosamine-fructose-6-phosphateaminotransferasechromosome CDS760789 1968 + 0.640752
glmU XOO0736 UDP-N-acetylglucosamine pyrophosphorylasechromosome CDS753820 1527 + 0.655534
gtrB XOO1809 glucosyl transferasechromosome CDS1904935 1107 + 0.634146
gtrB XOO3670 glycosyl transferasechromosome CDS3928297 1137 + 0.645558
gumB XOO3179 GumBchromosome CDS3415876 699 - 0.589413
gumC XOO3178 GumCchromosome CDS3414455 1482 - 0.579622
gumD XOO3177 GumDchromosome CDS3412757 1521 - 0.608153
gumH XOO3173 GumHchromosome CDS3407982 1143 - 0.603675
gumI XOO3172 GumIchromosome CDS3406936 1050 - 0.64
gumM XOO3168 GumMchromosome CDS3402534 795 - 0.636478
hmsR XOO3913 HmsRchromosome CDS4175041 1353 + 0.629712
hpa2 XOO0096 Hpa2chromosome CDS89888 564 + 0.556738
hrpM XOO4011 periplasmic glucan biosynthesis proteinchromosome CDS4282750 2058 - 0.665695
htrB XOO0925 lipid A biosynthesis lauroyl acyltransferasechromosome CDS956093 921 - 0.643865
htrB XOO0596 lipid A biosynthesis lauroyl acyltransferasechromosome CDS621394 1017 - 0.687316
kdsA XOO2966 2-dehydro-3-deoxyphosphooctonate aldolasechromosome CDS3171287 834 - 0.629496
kdsB XOO2295 3-deoxy-manno-octulosonate cytidylyltransferasechromosome CDS2430549 780 - 0.680769
kdtA XOO0926 3-deoxy-D-manno-octulosonic acid transferasechromosome CDS957090 1317 + 0.649962
kpsF XOO1289 polysialic acid capsule expression proteinchromosome CDS1319971 1572 - 0.672392
lepA XOO1852 GTP binding proteinchromosome CDS1954443 1806 + 0.62237
lgt XOO3753 prolipoprotein diacylglyceryl transferasechromosome CDS4007260 891 - 0.637486
lgtB XOO4089 glycosyltransferasechromosome CDS4373947 810 + 0.622222
lolA XOO2544 outer-membrane lipoproteins carrier protein precursorchromosome CDS2691471 771 - 0.612192
lolB XOO3605 outer membrane lipoprotein precursorchromosome CDS3868305 654 - 0.695719
lolC XOO2305 lipoprotein releasing system transmembrane proteinchromosome CDS2441330 1251 - 0.619504
lpxA XOO1965 UDP-N-acetylglucosamine acyltransferasechromosome CDS2065735 792 - 0.652778
lpxB XOO1964 lipid A disaccharide synthasechromosome CDS2064440 1299 - 0.657429
lpxC XOO3821 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylasechromosome CDS4074283 933 - 0.607717
lpxD XOO1967 UDP-3-O-(R-3-hydroxymyristoyl)-glucosamineN-acyl transferasechromosome CDS2067008 1014 - 0.661736
lpxK XOO2296 lipid A 4'-kinasechromosome CDS2431620 1041 - 0.673391
lspA XOO1627 lipoprotein signal peptidasechromosome CDS1674826 621 + 0.634461
lytB XOO1628 penicillin tolerance proteinchromosome CDS1675385 1101 + 0.656676
mexC XOO1562 RND efflux membrane fusion proteinchromosome CDS1594448 1104 + 0.696558
mltB XOO3958 membrane-bound lytic transglycosylasechromosome CDS4227491 1140 - 0.654386
mopB XOO3695 outer membrane proteinchromosome CDS3957142 531 - 0.632768
mpl XOO0964 UDP-N-acetylmuramate-L-alanine ligasechromosome CDS996752 1368 + 0.660088
mraW XOO3833 cell division proteinchromosome CDS4090569 1062 - 0.666667
mraY XOO3828 phospho-N-acetylmuramoyl-pentapeptide-transferasechromosome CDS4084234 1086 - 0.617864
mrcA XOO1156 penicillin-binding protein 1Achromosome CDS1180064 2430 - 0.646914
mrdA XOO3968 penicillin-binding protein 2chromosome CDS4241727 2061 - 0.672974
mreD XOO3969 rod shape-determining proteinchromosome CDS4243791 486 - 0.656379
mscL XOO3381 large-conductance mechanosensitive channelchromosome CDS3603056 435 + 0.583908
mtgA XOO1808 monofunctional biosynthetic peptidoglycan transglycosylasechromosome CDS1904324 669 + 0.638266
murA XOO1290 UDP-N-acetylglucosamine1-carboxyvinyltransferasechromosome CDS1321493 1275 + 0.669804
murB XOO2236 UDP-N-acetylpyruvoylglucosamine reductasechromosome CDS2349365 1023 - 0.649071
murC XOO3825 UDP-N-acetylmuramate-alanine ligasechromosome CDS4080109 1503 - 0.661344
murD XOO1436 UDP-N-acetylmuramoylalanine-D-glutamate ligasechromosome CDS1465062 1407 + 0.664534
murE XOO3830 UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligasechromosome CDS4086817 1488 - 0.664651
murF XOO3829 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligasechromosome CDS4085309 1512 - 0.666005
murG XOO3826 UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenolchromosome CDS4081539 1326 - 0.66365
nlpD XOO2953 lipoproteinchromosome CDS3162541 801 - 0.659176
nodT XOO4602 outer membrane efflux proteinchromosome CDS4906051 678 + 0.662242
oma XOO1968 outer membrane antigenchromosome CDS2068421 2454 - 0.617359
omp21 XOO1201 outer membrane proteinchromosome CDS1226743 504 - 0.621032
ompP6 XOO1669 outer membrane protein P6 precursorchromosome CDS1733180 546 + 0.624542
ompW XOO0717 outer membrane proteinchromosome CDS736105 687 - 0.63901
ompW XOO1202 outer membrane protein Wchromosome CDS1227471 708 - 0.652542
oprN XOO2778 outer membrane protein OprN precursorchromosome CDS2941302 1512 - 0.683862
opsX XOO1056 saccharide biosynthesis regulatory proteinchromosome CDS1081143 1050 - 0.672381
ostA XOO3745 organic solvent tolerance precursorchromosome CDS3998242 2499 + 0.617047
pat XOO2175 phosphinothricin N-acetyltransferasechromosome CDS2286054 540 - 0.624074
pglA XOO2699 polygalacturonasechromosome CDS2858626 1671 + 0.606224
plcN XOO1651 phospholipase Cchromosome CDS1713854 1152 - 0.684028
plcN XOO1652 phospholipase Cchromosome CDS1715341 663 - 0.651584
ponB XOO1739 penicillin-binding protein 1Bchromosome CDS1808886 2445 + 0.67771
prc XOO3950 tail-specific proteasechromosome CDS4215486 2184 - 0.630495
raxA XOO3544 putative membrane fusion protein RaxAchromosome CDS3814101 1320 - 0.698485
rfb303 XOO2184 lipopolysaccharide core biosynthesis proteinchromosome CDS2294337 1071 + 0.627451
rhsD XOO1580 RhsD proteinchromosome CDS1615622 1509 - 0.591783
rlpA XOO3957 rare lipoprotein Achromosome CDS4226079 1416 - 0.673729
rlpB XOO3328 lipoproteinchromosome CDS3560831 642 - 0.665109
rmlA XOO0793 glucose-1-phosphate thymidylyltransferasechromosome CDS808703 984 + 0.575203
rmlB XOO0792 dTDP-glucose 4,6-dehydratasechromosome CDS807619 1125 + 0.594667
rmlC XOO0794 dTDP-4-dehydrorhamnose 3,5-epimerasechromosome CDS809683 558 + 0.605735
rmlD XOO0795 dTDP-4-dehydrorhamnose reductasechromosome CDS810237 909 + 0.639164
rpfN XOO2813 regulator of pathogenicity factorschromosome CDS3000276 1341 + 0.651007
rspA XOO4421 starvation sensing proteinchromosome CDS4709072 1347 + 0.639198
slp XOO1068 outer membrane protein Slpchromosome CDS1090574 534 - 0.661049
slt XOO0820 soluble lytic murein transglycosylasechromosome CDS836609 2118 + 0.663834
tcbD XOO4102 chloromuconate cycloisomerasechromosome CDS4383434 1098 + 0.631148
tolC XOO0927 TolCchromosome CDS958679 1380 - 0.624638
tonB XOO1744 TonB proteinchromosome CDS1816033 876 - 0.682648
tonB XOO0008 TonB proteinchromosome CDS11190 672 + 0.638393
traF XOO0603 TraF proteinchromosome CDS630006 714 + 0.602241
ttgF XOO1560 outer membrane channel proteinchromosome CDS1591995 1572 + 0.657125
ugd XOO2066 UDP-glucose dehydrogenasechromosome CDS2167602 1350 + 0.618519
uptE XOO0775 outer membrane proteinchromosome CDS789200 891 + 0.691358
vacJ XOO0305 lipoproteinchromosome CDS317814 1059 - 0.680831
vioA XOO2590 nucleotide sugar transaminasechromosome CDS2741282 1323 + 0.622827
vipA XOO3082 polysaccharide biosynthetic proteinchromosome CDS3313630 1293 - 0.650425
wbnF XOO0502 nucleotide sugar epimerasechromosome CDS520401 1035 - 0.658937
wzt XOO0789 putative ATP binding proteinchromosome CDS803431 1320 - 0.512879
ybjY XOO0745 ABC transporter permeasechromosome CDS759448 1389 - 0.682505
yehZ XOO4511 ABC transporter amino acid permeasechromosome CDS4810985 1473 - 0.643585
ygeA XOO2234 putative resistance proteinchromosome CDS2348135 153 - 0.542484
yggB XOO2210 small conductance mechanosensitive ion channelchromosome CDS2321386 987 - 0.607903
yjbJ XOO2763 soluble lytic murein transglycosylasechromosome CDS2925237 1023 - 0.647116
yjcP XOO1999 outer membrane efflux proteinchromosome CDS2105915 1518 + 0.685771
yncA XOO0595 phosphinothricin acetyltransferasechromosome CDS620589 606 + 0.635314