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2024-05-07 05:38:41

Gene list

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COG category: Cell wall/membrane biogenesis
Organism: Yersinia pestis KIM, KIM

Number of genes found: 205

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Yersinia pestis KIM, KIM
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
acrA acridine efflux pumpchromosome CDS786233 1161 + 0.525409
acrA acridine efflux pumpchromosome CDS1185590 1188 - 0.490741
aefA putative alpha helix proteinchromosome CDS1188183 3420 + 0.467544
agaS putative tagatose-6-phosphate aldose/ketose isomerasechromosome CDS3543520 1167 + 0.472151
alr alanine racemase 1chromosome CDS654149 1080 + 0.546296
amiB N-acetylmuramoyl-l-alanine amidase IIchromosome CDS708418 1914 + 0.509404
asmA suppressor of ompF assembly mutantschromosome CDS2913409 1857 - 0.480345
cfa cyclopropane fatty acyl phospholipid synthasechromosome CDS2148055 1152 - 0.465278
cutF copper homeostasis protein (lipoprotein)chromosome CDS3424266 729 - 0.429355
cyaE putative membrane proteinchromosome CDS3940611 1527 + 0.521938
dacA D-alanyl-D-alanine carboxypeptidase, fraction Achromosome CDS1317738 1203 - 0.487116
dacB D-alanyl-D-alanine carboxypeptidase, fraction Bchromosome CDS761193 1449 - 0.482402
dacC D-alanyl-D-alanine carboxypeptidase; penicillin-binding protein 6chromosome CDS3162240 1299 - 0.47729
dapA dihydrodipicolinate synthasechromosome CDS1574439 900 + 0.491111
ddg putative heat shock proteinchromosome CDS250774 1002 + 0.507984
ddlB D-alanine-D-alanine ligase Bchromosome CDS4016850 921 - 0.5038
dgkA diacylglycerol kinasechromosome CDS647152 372 + 0.475806
dniR transcriptional regulator for nitrite reductase (cytochrome c552)chromosome CDS3407693 1452 + 0.469008
flgJ flagellar biosynthesis proteinchromosome CDS2765093 945 - 0.540741
ftsI peptidoglycan synthetasechromosome CDS4026887 1764 - 0.531746
ftsQ cell division proteinchromosome CDS4016021 828 - 0.518116
galE UDP-galactose-4-epimerasechromosome CDS3350473 1017 + 0.525074
galF probably a UDP-gal transferasechromosome CDS2893692 894 - 0.485459
galU glucose-1-phosphate uridylyltransferasechromosome CDS2894669 891 - 0.470258
gidB glucose-inhibited division proteinchromosome CDS4597740 672 - 0.456845
glmS L-glutamine:D-fructose-6-phosphateaminotransfera sechromosome CDS4585973 1830 - 0.472131
glmU N-acetyl glucosamine-1-phosphate uridyltransferasechromosome CDS4588003 1377 - 0.474219
hasB TonB-like proteinchromosome CDS344142 804 + 0.472637
hasE secretion permease, Type I secretion systemchromosome CDS342749 1329 + 0.486832
hasF outer membrane channel proteinchromosome CDS3898569 1404 + 0.47151
hemM putative glutamyl-tRNA dehydrogenasechromosome CDS2529154 687 + 0.478894
imp organic solvent tolerance proteinchromosome CDS4090098 2379 + 0.479613
kdsA 2-dehydro-3-deoxyphosphooctulonate aldolasechromosome CDS2523483 855 - 0.501754
kdsB CTP:CMP-3-deoxy-D-manno-octulosonate transferasechromosome CDS3064046 753 - 0.512616
kdtA 3-deoxy-D-manno-octulosonic-acid transferase (KDO transferase)chromosome CDS94743 1386 + 0.497114
lepA GTP-binding elongation factorchromosome CDS1438342 1800 + 0.456667
lgt phosphatidylglycerol-prolipoprotein diacylglyceryl transferasechromosome CDS3490298 873 - 0.4937
lnt apolipoprotein N-acyltransferasechromosome CDS1334499 1587 - 0.508507
lolA periplasmic proteinchromosome CDS3098601 609 - 0.45156
lpxA UDP-N-acetylglucosamine acetyltransferasechromosome CDS3435873 789 - 0.470215
lpxB tetraacyldisaccharide-1-P sythetasechromosome CDS3434685 1185 - 0.490295
lpxC UDP-3-O-acyl N-acetylglucosamine deacetylasechromosome CDS4012494 936 - 0.458333
lpxD UDP-3-O-(3-hydroxymyristoyl)-glucosamineN-acyltr ansferasechromosome CDS3437353 1023 - 0.462366
lspA prolipoprotein signal peptidase (SPase II)chromosome CDS4110543 510 - 0.454902
lytB penicillin tolerance proteinchromosome CDS4109083 978 - 0.488753
mepA murein DD-endopeptidasechromosome CDS1753325 870 + 0.534483
mltA membrane-bound lytic murein transglycosylase Achromosome CDS3470278 1173 - 0.481671
mltB membrane-bound lytic murein transglycosylase Bchromosome CDS1689308 1113 + 0.514825
mltC membrane-bound lytic murein transglycosylase Cchromosome CDS3680389 1089 + 0.461892
mltE murein transglycosylase Echromosome CDS2095728 663 + 0.470588
mraY putative phospho-N-acetylmuramoyl-pentapeptide transferasechromosome CDS4022964 1083 - 0.497692
mrcA peptidoglycan synthetase; penicillin-binding protein 1Achromosome CDS4381514 2580 - 0.516279
mrcB peptidoglycan synthetase; penicillin-binding protein 1Bchromosome CDS887837 2319 + 0.535144
mrdA peptidoglycan synthetase, penicillin-binding protein 2chromosome CDS1321732 1896 - 0.493143
mreC rod shape-determining proteinchromosome CDS213752 996 - 0.509036
mreD rod shape-determining proteinchromosome CDS213267 489 - 0.482618
msbB suppressor of htrB, heat shock proteinchromosome CDS2476838 963 - 0.469367
mscL mechanosensitive channel proteinchromosome CDS4457708 423 - 0.423168
mtgA putative peptidoglycan enzymechromosome CDS130944 726 - 0.498623
murA UDP-N-glucosamine 1-carboxyvinyltransferasechromosome CDS152025 1263 - 0.505147
murB UDP-N-acetylenolpyruvoylglucosamine reductasechromosome CDS528054 1038 + 0.435453
murC UDP-N-acetyl-muramate:alanine ligasechromosome CDS4017763 1524 - 0.515092
murD UDP-N-acetylmuramoylalanine-D-glutamate ligasechromosome CDS4021645 1317 - 0.537585
murE meso-diaminopimelate-adding enzymechromosome CDS4025413 1488 - 0.537634
murF D-alanine:D-alanine-adding enzymechromosome CDS4024040 1377 - 0.52215
murG UDP-N-acetylglucosamine:N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferasechromosome CDS4019376 1071 - 0.557423
murI glutamate racemasechromosome CDS354573 900 + 0.481111
nlpB lipoprotein-34chromosome CDS1575353 1062 + 0.514124
nlpC lipoproteinchromosome CDS2117956 465 + 0.468817
nlpD lipoproteinchromosome CDS932273 1002 + 0.478044
ompA outer membrane porin Achromosome CDS3019411 1092 + 0.498168
ompC outer membrane protein 1b (Ib;c)chromosome CDS3264464 1125 - 0.441778
ompH automembrane protein Hchromosome CDS3438379 591 - 0.450085
ompT outer membrane protein 3b (a), protease VIIchromosome CDS3255424 936 + 0.403846
ompX outer membrane protein Xchromosome CDS1472241 585 + 0.4
ompX outer membrane protein Xchromosome CDS1855030 531 + 0.483992
pal peptidoglycan-associated lipoproteinchromosome CDS3362788 507 - 0.481262
pbpG penicillin-binding protein 7chromosome CDS3322042 936 - 0.457265
pla plasminogen activatorpPCP1 CDS6665 939 + 0.419595
pldA outer membrane phospholipase Achromosome CDS442307 879 + 0.459613
prc carboxy-terminal protease for penicillin-binding protein 3chromosome CDS2059554 2121 + 0.474305
rafQ putative LPS biosynthetic enzymechromosome CDS4424970 981 - 0.517839
rfaC heptosyl transferase Ichromosome CDS93442 990 + 0.507071
rfaD ADP-L-glycero-D-mannoheptose-6-epimerasechromosome CDS91394 978 + 0.452965
rfaF ADP-heptose--lps heptosyltransferase IIchromosome CDS92390 1077 + 0.51532
rfaQ lipopolysaccharide biosynthesis proteinchromosome CDS4184816 1200 - 0.4725
rfe UDP-GlcNAc:undecaprenylphosphate GlcNAc-1-phosphate transferasechromosome CDS404461 1098 + 0.469035
rffG dTDP-glucose 4,6-dehydratasechromosome CDS409316 1074 + 0.513035
rffH glucose-1-phosphate thymidylyltransferasechromosome CDS410474 1092 + 0.488095
rlpA rlpA lipoproteinchromosome CDS1319343 1083 - 0.530933
rlpB rlpB lipoproteinchromosome CDS1326407 624 - 0.520833
slt soluble lytic murein transglycosylasechromosome CDS4140685 1950 - 0.51641
slyB putative outer membrane proteinchromosome CDS2162427 468 - 0.536325
slyB putative outer membrane receptorchromosome CDS236518 474 + 0.540084
spr putative lipoproteinchromosome CDS3212449 585 + 0.463248
tolA membrane spanning proteinchromosome CDS3364757 1182 - 0.50846
tonB energy transducerchromosome CDS2245657 759 + 0.492754
vacJ lipoprotein precursorchromosome CDS1742206 777 + 0.51094
wcaG putative nucleotide di-P-sugar epimerase or dehydratasechromosome CDS1216074 966 + 0.416149
wecB UDP-N-acetyl glucosamine-2-epimerasechromosome CDS406882 1185 + 0.502954
wecC UDP-N-acetyl-D-mannosaminuronic acid dehydrogenasechromosome CDS408063 1263 + 0.498021
wecE putative regulatorchromosome CDS412207 1206 + 0.488391
wecG probable UDP-N-acetyl-D-mannosaminuronic acid transferasechromosome CDS417148 741 + 0.51552
wzzE putative transport proteinchromosome CDS405576 1080 + 0.483333
y0087 lipopolysaccharide core biosynthesis glycosyl transferasechromosome CDS96129 783 + 0.466156
y0230 hypotheticalchromosome CDS243177 606 - 0.508251
y0255 Rhs-like core proteinchromosome CDS269719 4545 - 0.549395
y0265 rhsD proteinchromosome CDS278802 1371 - 0.521517
y0266 Rhs-like proteinchromosome CDS280200 2892 - 0.551867
y0287 putative secretion permeasechromosome CDS308017 1317 - 0.393318
y0431 hypotheticalchromosome CDS478592 720 - 0.5125
y0545 orfY protein in hemin uptake locuschromosome CDS612267 651 - 0.534562
y0619 putative periplasmic binding transport proteinchromosome CDS697928 3360 - 0.521429
y0650 hypothetical proteinchromosome CDS732213 741 - 0.512821
y0659 hypothetical proteinchromosome CDS741723 1737 + 0.513529
y0665 putative ligasechromosome CDS749761 1383 + 0.500362
y0704 putative outer membrane protein, efflux pumpchromosome CDS790524 1407 + 0.510306
y0718 hypothetical proteinchromosome CDS805856 639 + 0.561815
y0899 hypothetical proteinchromosome CDS1007565 813 - 0.462485
y0968 hypothetical proteinchromosome CDS1094356 759 + 0.43083
y1022 putative sugar hydrolasechromosome CDS1150462 828 - 0.432367
y1024 putative polymerase/proteinasechromosome CDS1153117 579 - 0.46114
y1068 putative glucose-1-phosphate cytidylyltransferasechromosome CDS1203414 786 + 0.437659
y1069 putative CDP-D-glucose-4,6-dehydratasechromosome CDS1204340 939 + 0.457934
y1070 putativeCDP-4-keto-6-deoxy-d-glucose-3-dehydrasechromosome CDS1205296 1314 + 0.425419
y1071 putative CDP-paratose synthetasechromosome CDS1206646 858 + 0.356643
y1075 putative glycosyltransferasechromosome CDS1210215 714 + 0.291317
y1076 putative mannosyltransferase proteinchromosome CDS1211308 1143 + 0.283465
y1078 putative mannosyltransferase-like proteinchromosome CDS1213881 1050 + 0.353333
y1082 putative glycosyltransferasechromosome CDS1218635 744 + 0.322581
y1084 putative O-antigen chain length determinantchromosome CDS1220804 1152 + 0.361979
y1141 putative penicillin-binding proteinchromosome CDS1281055 2538 - 0.524035
y1308 putative periplasmic binding transport proteinchromosome CDS1449970 1554 - 0.490348
y1344 hypotheticalchromosome CDS1488476 300 - 0.52
y1386 putative membrane proteinchromosome CDS1539355 1335 - 0.542322
y1426 hypotheticalchromosome CDS1582107 678 - 0.50885
y1454 putative membrane proteinchromosome CDS1611263 2280 - 0.442544
y1458 putative acetylneuraminate lyasechromosome CDS1616586 900 - 0.485556
y1481 putative membrane protein, possible efflux componentchromosome CDS1644360 1206 - 0.498342
y1508 hypotheticalchromosome CDS1672746 129 + 0.434109
y1512 putative periplasmic proteinchromosome CDS1674345 735 + 0.44898
y1530 hypotheticalchromosome CDS1693125 1683 - 0.454545
y1592 putative resistance proteinchromosome CDS1760032 831 - 0.476534
y1693 putative quarternary ammonium transport proteinchromosome CDS1867975 1680 + 0.486905
y1720 putative transport proteinchromosome CDS1900747 1248 - 0.504006
y1773 hypotheticalchromosome CDS1953804 888 + 0.495495
y1785 hypothetical proteinchromosome CDS1965798 1203 + 0.520366
y1787 putative kinasechromosome CDS1967694 1251 + 0.490008
y1806 putative oxidoreductasechromosome CDS1987130 858 - 0.508159
y1849 putative alanine racemasechromosome CDS2039038 1230 - 0.450406
y1851 hypotheticalchromosome CDS2041428 249 + 0.437751
y1917 putative enzymechromosome CDS2110265 1155 + 0.483983
y1918 putative sugar transferasechromosome CDS2111406 984 + 0.463415
y1921 hypothetical proteinchromosome CDS2115288 1665 + 0.451051
y1952 putative lipoproteinchromosome CDS2154707 915 - 0.451366
y1991 putative muconate cycloisomerase Ichromosome CDS2190673 975 + 0.521026
y2020 putative component of insecticidal toxin complexchromosome CDS2222770 2625 - 0.561143
y2044 putative outer membrane proteinchromosome CDS2252208 648 + 0.46142
y2079 hypotheticalchromosome CDS2290804 1002 + 0.491018
y2147 putative UDP-glucose dehydrogenasechromosome CDS2372483 1374 - 0.427948
y2167 hypothetical proteinchromosome CDS2394305 771 - 0.465629
y2194 putative phage tail proteinchromosome CDS2427725 711 - 0.524613
y2198 hypotheticalchromosome CDS2433520 312 - 0.464744
y2230 putative transglycosylasechromosome CDS2457770 1089 - 0.465565
y2237 putative outer membrane proteinchromosome CDS2465635 606 - 0.488449
y2248 hypothetical proteinchromosome CDS2478067 1317 - 0.487472
y2328 hypotheticalchromosome CDS2563986 1047 - 0.492837
y2329 putative oxidoreductasechromosome CDS2565032 963 - 0.496366
y2333 putative nucleotide di-P-sugar epimerase or dehydratasechromosome CDS2568210 1017 - 0.53884
y2357 hypothetical proteinchromosome CDS2597566 1374 - 0.509461
y2598 hypotheticalchromosome CDS2861301 1278 - 0.50939
y2608 putative hemolysinchromosome CDS2872854 1140 - 0.428947
y2617 putative enzyme of sugar metabolismchromosome CDS2883016 828 - 0.514493
y2655 putative membrane proteinchromosome CDS2927135 696 + 0.481322
y2670 hypotheticalchromosome CDS2946491 1263 + 0.315914
y2702 hypotheticalchromosome CDS2985362 1737 - 0.626367
y2759 putative outer membrane porinchromosome CDS3047455 1131 + 0.461538
y2776 putative enzymechromosome CDS3067905 987 - 0.529889
y2791 hypotheticalchromosome CDS3089802 675 - 0.355556
y2814 putative membrane proteinchromosome CDS3117529 1116 - 0.490143
y2824 putative dTDP-glucose enzymechromosome CDS3129098 1491 + 0.525151
y2825 putative nucleotide di-P-sugar epimerase or dehydratasechromosome CDS3130670 1026 + 0.51462
y2983 putative outer membrane porinchromosome CDS3291078 1116 + 0.415771
y3127 hypothetical proteinchromosome CDS3439034 2388 - 0.468174
y3128 hypothetical proteinchromosome CDS3441458 1356 - 0.473451
y3161 putative amidasechromosome CDS3472172 1269 - 0.464145
y3247 hypothetical proteinchromosome CDS3580781 858 + 0.488345
y3306 putative transport proteinchromosome CDS3638484 870 - 0.501149
y3365 hypotheticalchromosome CDS3708648 1737 - 0.626367
y3392 putative drug efflux proteinchromosome CDS3740166 1278 + 0.532081
y3432 rhsD proteinchromosome CDS3816097 4053 + 0.555638
y3447 hypotheticalchromosome CDS3834214 294 - 0.503401
y3524 putative kinasechromosome CDS3906858 1446 - 0.529737
y3634 putative apolipoproteinchromosome CDS4029030 963 - 0.519211
y3731 putative outer membrane proteinchromosome CDS4148178 507 + 0.4714
y3760 putative multidrug resistance proteinchromosome CDS4181359 999 - 0.511512
y3762 hypotheticalchromosome CDS4183536 1233 - 0.460665
y3794 hypotheticalchromosome CDS4213154 468 - 0.544872
y3842 hypothetical proteinchromosome CDS4275595 2217 + 0.528642
y3968 hypotheticalchromosome CDS4426043 990 - 0.493939
y4093 putative outer membrane proteinchromosome CDS4542710 660 + 0.542424
y4126 hypotheticalchromosome CDS4579742 672 - 0.416667
yapC putative autotransporterchromosome CDS1274178 1917 - 0.47157
yehZ1 hypotheticalchromosome CDS3301783 468 - 0.470085
yehZ2 hypotheticalchromosome CDS3301318 207 - 0.463768