Gene list
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COG category: Cell wall/membrane biogenesis
Organism: Desulfotalea psychrophila LSv54, LSv54
Number of genes found: 172
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| Desulfotalea psychrophila LSv54, LSv54 | ||||||||
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| Name | Locus tag | Product / Description | Genomic element | Type | Begin | Length | Strand | GC-content |
| NA | DP2904 | conserved hypothetical protein | chromosome | CDS | 3284633 | 888 | - | 0.471847 |
| NA | DP1444 | conserved hypothetical protein | chromosome | CDS | 1613719 | 1815 | + | 0.481543 |
| NA | DP1451 | hypothetical membrane protein | chromosome | CDS | 1622774 | 1710 | - | 0.445029 |
| NA | DP2702 | related to outer membrane protease | chromosome | CDS | 3063927 | 981 | + | 0.477064 |
| NA | DP2724 | probable UDP-N-acetylglucosamine 1-carboxyvinyltransferase | chromosome | CDS | 3085872 | 1278 | - | 0.523474 |
| NA | DP3010 | related to organic solvent tolerance protein (OstA) | chromosome | CDS | 3407343 | 2799 | + | 0.491247 |
| NA | DPPB86 | related to capsular polysaccharide export protein | LSv54, large plasmid | CDS | 106467 | 858 | - | 0.5 |
| NA | DP0014 | probable UDP-glucose dehydrogenase | chromosome | CDS | 12672 | 1344 | - | 0.508929 |
| NA | DP1963 | unknown protein | chromosome | CDS | 2228199 | 816 | + | 0.459559 |
| NA | DP2453 | related to glycosyltransferase | chromosome | CDS | 2795492 | 2235 | + | 0.455034 |
| NA | DP1675 | related to penicillin-binding protein 1A | chromosome | CDS | 1873963 | 3228 | - | 0.460967 |
| NA | DP0251 | related to N-acylamino acid racemase (MenC) | chromosome | CDS | 271160 | 1107 | - | 0.565492 |
| NA | DP0028 | probable pilin glycosylation protein | chromosome | CDS | 28476 | 1182 | - | 0.501692 |
| NA | DP2214 | related to 3-deoxy-manno-octulosonate cytidylyltransferase | chromosome | CDS | 2548939 | 579 | - | 0.454231 |
| NA | DP0372 | probable cobalt-zinc-cadmium resistance protein (CzcB) | chromosome | CDS | 402878 | 1365 | - | 0.517216 |
| NA | DP2930 | probableUDP-N-acetylmuramate:L-alanyl-gamma-D- glutamyl-meso-diamino pimelate ligase | chromosome | CDS | 3314459 | 1437 | + | 0.511482 |
| NA | DP2551 | probable lipoprotein signal peptidase | chromosome | CDS | 2905904 | 498 | - | 0.439759 |
| NA | DP0851 | probable prolipoprotein diacylglyceryl transferase | chromosome | CDS | 956714 | 819 | - | 0.493284 |
| NA | DP0655 | conserved hypothetical protein | chromosome | CDS | 718760 | 780 | - | 0.453846 |
| NA | DP2191 | probable pleiotropic regulatory protein | chromosome | CDS | 2513723 | 1188 | - | 0.469697 |
| NA | DP1567 | unknown protein | chromosome | CDS | 1748161 | 375 | - | 0.426667 |
| NA | DP1845 | unknown protein | chromosome | CDS | 2079962 | 636 | - | 0.506289 |
| NA | DP0044 | probable glucose-1-phosphate thymidylyltransferase | chromosome | CDS | 44108 | 882 | - | 0.49093 |
| NA | DP2900 | probablephospho-N-acetylmuramoyl-pentapeptide-transferase | chromosome | CDS | 3278087 | 1080 | - | 0.45463 |
| NA | DP1705 | related to 3-deoxy-D-manno-octulosonic-acid transferase | chromosome | CDS | 1915264 | 1275 | - | 0.454118 |
| NA | DP1657 | unknown protein | chromosome | CDS | 1850089 | 399 | - | 0.473684 |
| NA | DP2582 | conserved hypothetical protein | chromosome | CDS | 2937759 | 1380 | + | 0.468116 |
| NA | DP2815 | hypothetical protein | chromosome | CDS | 3173251 | 1218 | + | 0.495074 |
| NA | DP2901 | probable murein precusor biosynthesis bifunctional protein | chromosome | CDS | 3279225 | 3045 | - | 0.507061 |
| NA | DP2296 | conserved hypothetical protein | chromosome | CDS | 2631862 | 1146 | - | 0.490401 |
| NA | DP1722 | probable transport protein | chromosome | CDS | 1937172 | 1536 | - | 0.488281 |
| NA | DP2899 | related to UDP-N-acetylmuramoylalanine-D-glutamate ligase | chromosome | CDS | 3276704 | 1371 | - | 0.52954 |
| NA | DP1680 | related to lipoprotein | chromosome | CDS | 1881655 | 633 | - | 0.469194 |
| NA | DP0032 | probable lipopolysaccharide biosynthesis protein (WbpT) | chromosome | CDS | 32206 | 1143 | - | 0.448819 |
| NA | DP1782 | related to lipoprotein releasing system transmembrane protein | chromosome | CDS | 2010659 | 1275 | - | 0.515294 |
| NA | DP0210 | conserved hypothetical membrane protein | chromosome | CDS | 226426 | 1251 | - | 0.464428 |
| NA | DP0964 | probable glycine-betaine transporter (OpuD) | chromosome | CDS | 1078218 | 1692 | + | 0.470449 |
| NA | DP0204 | probable hydrolase, related to penicillin acylase | chromosome | CDS | 219808 | 1041 | + | 0.479347 |
| NA | DP2284 | conserved hypothetical protein | chromosome | CDS | 2619434 | 756 | - | 0.420635 |
| NA | DPPB90 | related to capsular polysaccharide biosynthesis protein | LSv54, large plasmid | CDS | 109631 | 639 | - | 0.42723 |
| NA | DPPB77 | related to glycosyltransferase | LSv54, large plasmid | CDS | 93428 | 1149 | - | 0.299391 |
| NA | DP2923 | probable bifunctional GlmU protein | chromosome | CDS | 3305629 | 798 | + | 0.496241 |
| NA | DP2835 | related to outer membrane protein (OprM) | chromosome | CDS | 3195547 | 1380 | + | 0.475362 |
| NA | DP0738 | related to peptidoglycan-associated lipoprotein precursor | chromosome | CDS | 830665 | 696 | - | 0.452586 |
| NA | DP2411 | unknown protein | chromosome | CDS | 2753282 | 834 | + | 0.471223 |
| NA | DP2971 | similar to TonB protein | chromosome | CDS | 3361328 | 660 | - | 0.533333 |
| NA | DP2863 | unknown protein | chromosome | CDS | 3234763 | 558 | - | 0.419355 |
| NA | DP0023 | probable GDP-L-fucose synthetase | chromosome | CDS | 22263 | 972 | - | 0.52572 |
| NA | DP1161 | hypothetical membrane protein | chromosome | CDS | 1294057 | 1074 | + | 0.463687 |
| NA | DP2123 | related to multidrug-efflux transport protein A precursor | chromosome | CDS | 2439126 | 1191 | - | 0.495382 |
| NA | DP2455 | conserved hypothetical protein | chromosome | CDS | 2798698 | 1017 | + | 0.452311 |
| NA | DP1765 | conserved hypothetical membrane protein | chromosome | CDS | 1989444 | 2319 | + | 0.471755 |
| NA | DP2184 | related to putative soluble lytic murein transglycosylase [Precursor] | chromosome | CDS | 2502795 | 624 | + | 0.416667 |
| NA | DP2121 | related to outer membrane lipoprotein | chromosome | CDS | 2434479 | 1431 | - | 0.531097 |
| NA | DP0153 | hypothetical protein | chromosome | CDS | 170034 | 1401 | + | 0.500357 |
| NA | DP2685 | related to flagellar muramidase protein (FlgJ) | chromosome | CDS | 3046772 | 315 | + | 0.428571 |
| NA | DPPB68 | probable UTP-glucose-1-phosphate uridylyltransferase | LSv54, large plasmid | CDS | 81927 | 867 | - | 0.525952 |
| NA | DP2924 | conserved hypothetical membrane protein | chromosome | CDS | 3306439 | 1536 | + | 0.466797 |
| NA | DP1218 | probable lytic transglycosylase | chromosome | CDS | 1359480 | 870 | - | 0.466667 |
| NA | DP1057 | unknown protein | chromosome | CDS | 1193359 | 1095 | - | 0.457534 |
| NA | DP1182 | related to choloylglycine hydrolase | chromosome | CDS | 1320988 | 1116 | + | 0.452509 |
| NA | DP1083 | probable penicillin-binding protein 2 | chromosome | CDS | 1220633 | 1929 | + | 0.49041 |
| NA | DP1938 | related to tetraacyldisaccharide 4'-kinase (LpxK) | chromosome | CDS | 2199715 | 1047 | + | 0.453677 |
| NA | DP0427 | related to soluble lytic murein transglycosylase [precursor] | chromosome | CDS | 456243 | 609 | - | 0.490969 |
| NA | DPPB70 | probable UDP-glucose 6-dehydrogenase | LSv54, large plasmid | CDS | 84297 | 1341 | - | 0.472036 |
| NA | DP0122 | related to 17 kDa surface antigen | chromosome | CDS | 135600 | 498 | - | 0.491968 |
| NA | DPPB85 | related to exopolysaccharide biosynthesis protein (GumC protein) | LSv54, large plasmid | CDS | 104923 | 1398 | - | 0.476395 |
| NA | DP2182 | unknown protein | chromosome | CDS | 2500770 | 687 | + | 0.515284 |
| NA | DP2874 | hypothetical protein | chromosome | CDS | 3244672 | 1374 | + | 0.451965 |
| NA | DP2902 | related to sporulation specific penicillin-binding protein | chromosome | CDS | 3282303 | 1833 | - | 0.479542 |
| NA | DP0022 | probable UTP-glucose-1-phosphate uridylyltransferase | chromosome | CDS | 21049 | 867 | - | 0.538639 |
| NA | DP0765 | probable 2-dehydro-3-deoxyphosphooctonate aldolase | chromosome | CDS | 860393 | 843 | - | 0.495848 |
| NA | DP2556 | probable carboxy-terminal processing protease [Precursor] | chromosome | CDS | 2912531 | 1317 | + | 0.503417 |
| NA | DP1698 | related to acriflavine resistance protein E [Precursor] septum formation and cell membrane permeability | chromosome | CDS | 1905435 | 1233 | - | 0.477697 |
| NA | DP0514 | related to secretion protein | chromosome | CDS | 547881 | 1401 | + | 0.431121 |
| NA | DP0048 | related to lipopolysaccharide biosynthesis protein (WbpM) | chromosome | CDS | 48436 | 2142 | - | 0.50887 |
| NA | DP1392 | probable glycine-betaine transporter (BetL) | chromosome | CDS | 1555941 | 1617 | - | 0.491651 |
| NA | DP2896 | probable UDP-N-acetylenolpyruvoylglucosamine reductase (MurB) | chromosome | CDS | 3273240 | 921 | - | 0.495114 |
| NA | DP2221 | probable glucose-1-phosphate thymidylyltransferase | chromosome | CDS | 2554568 | 909 | + | 0.475248 |
| NA | DP1637 | conserved hypothetical membrane protein | chromosome | CDS | 1825614 | 1272 | - | 0.449686 |
| NA | DP0038 | related to glycosyl transferase | chromosome | CDS | 38348 | 951 | - | 0.347003 |
| NA | DP0281 | related to outer membrane protein | chromosome | CDS | 305386 | 2271 | + | 0.483047 |
| NA | DP2150 | probable cyclopropane-fatty-acyl-phospholipid synthase | chromosome | CDS | 2467482 | 1248 | + | 0.440705 |
| NA | DP0030 | probable galactosyltransferase | chromosome | CDS | 30297 | 597 | - | 0.465662 |
| NA | DP1386 | probable glycine-betaine transporter (OpuD) | chromosome | CDS | 1547831 | 1533 | - | 0.41683 |
| NA | DP1055 | unknown protein | chromosome | CDS | 1192489 | 426 | - | 0.448357 |
| NA | DP1211 | related to outer membrane porin F [Precursor] | chromosome | CDS | 1352632 | 726 | + | 0.53719 |
| NA | DP0620 | related to glycosyl transferase | chromosome | CDS | 677658 | 1119 | + | 0.519214 |
| NA | DP2223 | probabledTDP-4-keto-6-deoxy-D-glucose-3,5-epimer ase | chromosome | CDS | 2556369 | 555 | + | 0.455856 |
| NA | DP2580 | related to glycosyl transferase | chromosome | CDS | 2934996 | 858 | - | 0.491841 |
| NA | DP1233 | conserved hypothetical protein | chromosome | CDS | 1374809 | 2340 | - | 0.495299 |
| NA | DP0999 | conserved hypothetical protein | chromosome | CDS | 1129824 | 966 | - | 0.452381 |
| NA | DP2753 | related to alanine racemase | chromosome | CDS | 3120473 | 1122 | - | 0.464349 |
| NA | DP1283 | related to glucose inhibited division protein B | chromosome | CDS | 1432968 | 654 | + | 0.533639 |
| NA | DP0045 | probable dTDP-D-glucose-4,6-dehydratase | chromosome | CDS | 44989 | 1110 | - | 0.478378 |
| NA | DP2293 | hypothetical protein | chromosome | CDS | 2630338 | 309 | - | 0.504854 |
| NA | DP2107 | hypothetical outer membrane protein | chromosome | CDS | 2417631 | 1341 | + | 0.491424 |
| NA | DP2846 | hypothetical protein | chromosome | CDS | 3212590 | 795 | + | 0.449057 |
| NA | DP2166 | probable LytB protein | chromosome | CDS | 2486890 | 942 | - | 0.514862 |
| NA | DP0692 | probable glutamate racemase | chromosome | CDS | 765488 | 888 | - | 0.503378 |
| NA | DP2836 | hypothetical protein | chromosome | CDS | 3196953 | 705 | + | 0.465248 |
| NA | DP0026 | probable UDP-glucose 4-epimerase | chromosome | CDS | 26962 | 1029 | + | 0.50243 |
| NA | DP0025 | probable GDP-mannose-4,6-dehydratase | chromosome | CDS | 24849 | 1122 | - | 0.510695 |
| NA | DP2898 | related to peptidoglycan synthesis protein (MurG) | chromosome | CDS | 3275576 | 1110 | - | 0.502703 |
| NA | DP0512 | related to outer membrane (agglutination) protein | chromosome | CDS | 543586 | 1665 | + | 0.438438 |
| NA | DP2417 | similar to penicillin-binding protein 1B | chromosome | CDS | 2760705 | 2487 | + | 0.417772 |
| NA | DP0228 | probable outer membrane protein F | chromosome | CDS | 242832 | 651 | - | 0.439324 |
| NA | DP2766 | hypothetical protein | chromosome | CDS | 3130769 | 510 | + | 0.498039 |
| NA | DPPB82 | related to polysaccharide transport proteins | LSv54, large plasmid | CDS | 101372 | 1257 | - | 0.514718 |
| NA | DP2154 | probable outer membrane lipoprotein Blc [Precursor] | chromosome | CDS | 2470326 | 516 | - | 0.403101 |
| NA | DP1852 | related to dolichyl-phosphate mannose synthase | chromosome | CDS | 2085236 | 1185 | - | 0.555274 |
| NA | DP2941 | related to mannose-1-phosphate guanylyltransferase | chromosome | CDS | 3328644 | 918 | - | 0.51634 |
| NA | DP1941 | related to aminotransferase | chromosome | CDS | 2202805 | 1203 | - | 0.467997 |
| NA | DP1810 | related to apolipoprotein N-acyltransferase | chromosome | CDS | 2043231 | 1557 | - | 0.512524 |
| NA | DP1815 | related to transglycosylase | chromosome | CDS | 2051023 | 1221 | + | 0.525798 |
| NA | DP0031 | related to glycosyl transferase (WbpU) | chromosome | CDS | 30890 | 1128 | - | 0.490248 |
| NA | DP3077 | probable periplasmic tail-specific proteinase | chromosome | CDS | 3475169 | 2133 | - | 0.476324 |
| NA | DP2943 | probableacyl-[acyl-carrier-protein]--UDP-N-acety lglucosamineO-acyltransferase | chromosome | CDS | 3330469 | 813 | - | 0.476015 |
| NA | DP0077 | conserved hypothetical protein | chromosome | CDS | 85530 | 1431 | + | 0.517121 |
| NA | DP0047 | probable lipopolysaccharide biosynthesis protein (WbpO) | chromosome | CDS | 47110 | 1281 | - | 0.454333 |
| NA | DP1220 | unknown protein | chromosome | CDS | 1361301 | 684 | - | 0.47076 |
| NA | DP1545 | conserved hypothetical protein | chromosome | CDS | 1725747 | 1086 | - | 0.540516 |
| NA | DP1696 | probable outer membrane efflux pump channel protein [precursor] | chromosome | CDS | 1900857 | 1401 | - | 0.48394 |
| NA | DP1920 | conserved hypothetical protein | chromosome | CDS | 2172159 | 723 | + | 0.456432 |
| NA | DP1781 | hypothetical protein | chromosome | CDS | 2009925 | 738 | - | 0.5 |
| NA | DP0905 | conserved hypothetical membrane protein | chromosome | CDS | 1019548 | 843 | + | 0.466192 |
| NA | DP2193 | probable GTP-binding protein (LepA) | chromosome | CDS | 2516267 | 1794 | + | 0.463211 |
| NA | DP0013 | related to glycosyltransferase involved capsular polysaccharide biosynthesis | chromosome | CDS | 11339 | 966 | + | 0.407867 |
| NA | DP2814 | related to penicillin-binding protein 4 [Precursor] | chromosome | CDS | 3172005 | 1242 | + | 0.492754 |
| NA | DP1749 | related to glycosyltransferase | chromosome | CDS | 1969033 | 1257 | + | 0.5179 |
| NA | DP2915 | probable glucosamine-fructose-6-phosphate aminotransferase | chromosome | CDS | 3294641 | 2076 | - | 0.479769 |
| NA | DP0058 | probable D-alanyl-D-alanine ligase | chromosome | CDS | 60668 | 969 | - | 0.547988 |
| NA | DP1081 | related to rod shape-determining protein (MreC) | chromosome | CDS | 1219261 | 879 | + | 0.477816 |
| NA | DP1936 | related to lipid-A-disaccharide synthase (LpxB) | chromosome | CDS | 2197009 | 1161 | - | 0.494401 |
| NA | DP1628 | related to lipoprotein releasing system transmembrane protein (LolC) | chromosome | CDS | 1812460 | 1233 | - | 0.522303 |
| NA | DP0432 | probable dihydrodipicolinate synthase | chromosome | CDS | 459237 | 894 | - | 0.493289 |
| NA | DP0094 | related to periplasmic protein (AsmA) | chromosome | CDS | 103204 | 2070 | + | 0.483575 |
| NA | DP0621 | hypothetical protein | chromosome | CDS | 679070 | 903 | - | 0.414175 |
| NA | DP0043 | probable cell wall biogenesis protein (WbpE) | chromosome | CDS | 43005 | 1107 | - | 0.426378 |
| NA | DP2716 | probable nucleotide sugar epimerase | chromosome | CDS | 3078169 | 1020 | - | 0.508824 |
| NA | DP0998 | hypothetical protein | chromosome | CDS | 1129433 | 402 | - | 0.440298 |
| NA | DPPB64 | probable UDP-glucose 4-epimerase | LSv54, large plasmid | CDS | 79178 | 1050 | + | 0.484762 |
| NA | DP2220 | probable dTDP-glucose 4,6-dehydratase | chromosome | CDS | 2553508 | 1056 | + | 0.464015 |
| NA | DP2423 | related to penicillin-binding protein (PbpA) | chromosome | CDS | 2770770 | 1503 | - | 0.467066 |
| NA | DP2864 | related to peptidoglycan-associated lipoprotein [Precursor] | chromosome | CDS | 3235327 | 534 | - | 0.447566 |
| NA | DP1783 | similar to lipoprotein releasing system transmembrane protein | chromosome | CDS | 2011930 | 1164 | - | 0.517182 |
| NA | DPPB91 | related to UDP-galactose-lipid carrier transferase | LSv54, large plasmid | CDS | 111030 | 1443 | + | 0.431046 |
| NA | DP2219 | related to lipopolysaccharide core biosynthesis glycosyl transferase (KdtX) | chromosome | CDS | 2552338 | 813 | - | 0.435424 |
| NA | DP0046 | probable lipopolysaccharide biosynthetic protein (WbpP) | chromosome | CDS | 46064 | 1038 | - | 0.455684 |
| NA | DP1737 | related to UDP-N-acetylglucosamine pyrophosphorylase | chromosome | CDS | 1954670 | 1020 | + | 0.503922 |
| NA | DP2224 | hypothetical protein | chromosome | CDS | 2556999 | 1158 | - | 0.501727 |
| NA | DP2630 | related to NAD(P)H steroid dehydrogenase | chromosome | CDS | 2991164 | 1020 | - | 0.501961 |
| NA | DP2897 | probable UDP-N-acetylmuramate-alanine ligase | chromosome | CDS | 3274192 | 1380 | - | 0.487681 |
| NA | DP2109 | related to secretion proteins | chromosome | CDS | 2421156 | 1290 | + | 0.520155 |
| NA | DP1070 | probable diacylglycerol kinase | chromosome | CDS | 1207813 | 432 | + | 0.444444 |
| NA | DPPB72 | related to glycosyltransferase (PssD) | LSv54, large plasmid | CDS | 87130 | 435 | - | 0.342529 |
| NA | DP1990 | hypothetical protein | chromosome | CDS | 2261682 | 726 | - | 0.512397 |
| NA | DP2962 | hypothetical membrane protein | chromosome | CDS | 3352366 | 1209 | - | 0.497932 |
| NA | DP2817 | related to 3-deoxy-D-manno-octulosonic-acid transferase | chromosome | CDS | 3175325 | 1326 | - | 0.486425 |
| NA | DP2895 | related to cell division protein FtsQ | chromosome | CDS | 3272239 | 816 | - | 0.41299 |
| NA | DP0593 | probable polysaccharide biosynthesis protein vipA/tviB | chromosome | CDS | 650224 | 1272 | + | 0.523585 |
| NA | DP1599 | similar to soluble lytic murein transglycosylase precursor | chromosome | CDS | 1783676 | 627 | + | 0.508772 |
| NA | DPPB75 | related to polysaccharide biosynthesis protein | LSv54, large plasmid | CDS | 90488 | 1083 | - | 0.240074 |
| NA | DP1676 | related to membrane-bound lytic murein transglycosylase D [Precursor] | chromosome | CDS | 1877617 | 1632 | + | 0.427696 |
| NA | DP1007 | probable UDP-glucose 4-epimerase | chromosome | CDS | 1139703 | 1029 | + | 0.506317 |
| NA | DP2222 | probable dTDP-4-rhamnose reductase | chromosome | CDS | 2555476 | 897 | + | 0.498328 |
| NA | DP1939 | probable UDP-3-O-3-hydroxymyristoyl N-acetylglucosamine deacetylase | chromosome | CDS | 2200954 | 993 | + | 0.451158 |
| NA | DP0373 | related to outer membrane protein TolC [Precursor] | chromosome | CDS | 404239 | 1431 | - | 0.487771 |
| NA | DP2945 | probable UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase | chromosome | CDS | 3331869 | 1119 | - | 0.473637 |
| NA | DP2578 | conserved hypothetical protein | chromosome | CDS | 2932465 | 1455 | + | 0.453608 |
| NA | DP0205 | probable hydrolase, related to penicillin acylase | chromosome | CDS | 221109 | 1041 | + | 0.492795 |
| NA | DP2527 | conserved hypothetical protein | chromosome | CDS | 2879380 | 1095 | - | 0.489498 |
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