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2024-05-05 18:07:20

Gene list

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COG category: Cell wall/membrane biogenesis
Organism: Silicibacter pomeroyi DSS-3, DSS-3

Number of genes found: 181

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Silicibacter pomeroyi DSS-3, DSS-3
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA SPO0945 AsmA family proteinchromosome CDS994657 1938 + 0.686275
NA SPO2125 acetyltransferase, GNAT familychromosome CDS2258355 498 - 0.662651
NA SPO1694 carbohydrate kinase, pfkB familychromosome CDS1802181 963 + 0.425753
NA SPO1595 mandelate racemase/muconate lactonizing enzymechromosome CDS1690385 1104 + 0.67029
NA SPO0556 UDP-glucose/GDP-mannose dehydrogenase family proteinchromosome CDS552230 1311 - 0.644546
NA SPO0854 glycosyl transferase, group 1 family proteinchromosome CDS903623 1080 - 0.675
NA SPO1056 conserved hypothetical proteinchromosome CDS1107039 828 - 0.642512
NA SPO1638 transglycosylase SLT domain proteinchromosome CDS1741995 579 + 0.649396
NA SPO2714 peptidase, M50 familychromosome CDS2869195 2148 - 0.6527
NA SPO1871 mechanosensitive ion channel family proteinchromosome CDS1991015 2274 - 0.643799
NA SPO3885 MltA/3D domain proteinchromosome CDS4100245 1041 - 0.654179
NA SPO2890 glucans biosynthesis glucosyltransferase H, putativechromosome CDS3089489 1884 + 0.666136
NA SPO1670 outer membrane protein, OMP85 familychromosome CDS1776944 2364 + 0.626058
NA SPO0040 ABC transporter, permease proteinchromosome CDS40483 822 + 0.580292
NA SPO0459 hypothetical proteinchromosome CDS468056 2370 + 0.606329
NA SPO1701 dihydrodipicolinate synthase family proteinchromosome CDS1812104 894 + 0.599553
NA SPO1539 O-antigen polymerase, putativechromosome CDS1622091 1398 + 0.690987
NA SPOA0004 OmpA family proteinmegaplasmid CDS4026 543 + 0.651934
NA SPO3727 VacJ lipoprotein, putativechromosome CDS3939444 807 - 0.607187
NA SPO0212 conserved hypothetical proteinchromosome CDS232647 951 + 0.631966
NA SPO3658 D-alanyl-D-alanine carboxypeptidase family proteinchromosome CDS3859896 1434 + 0.646443
NA SPO3755 conserved hypothetical proteinchromosome CDS3965485 852 + 0.663146
NA SPO3718 NLP/P60 family proteinchromosome CDS3930565 750 + 0.696
NA SPO3437 mechanosensitive ion channel family proteinchromosome CDS3640461 1362 - 0.620411
NA SPO0842 glycosyl transferase, group 1 family proteinchromosome CDS879591 1206 + 0.685738
NA SPO2455 organic solvent tolerance protein, putativechromosome CDS2607900 2157 + 0.63885
NA SPO2739 D-alanyl-D-alanine carboxypeptidasechromosome CDS2931128 1167 + 0.672665
NA SPO2323 mechanosensitive ion channel family proteinchromosome CDS2458194 1617 + 0.630798
NA SPOA0267 dihydroxydipicolinate synthase family proteinmegaplasmid CDS293082 957 - 0.599791
NA SPO3576 OmpA domain proteinchromosome CDS3785535 666 - 0.668168
NA SPO1668 membrane-associated zinc metalloprotease, putativechromosome CDS1775219 1371 + 0.676878
NA SPO1994 type I secretion membrane fusion protein, HlyD familychromosome CDS2119882 1314 - 0.599696
NA SPO0037 conserved hypothetical proteinchromosome CDS37703 1050 - 0.652381
NA SPO1756 polysaccharide biosynthesis/export proteinchromosome CDS1877215 1134 - 0.661376
NA SPO1376 glycosyl transferase, group 2 family proteinchromosome CDS1441842 1953 - 0.65745
NA SPO3088 OmpA family proteinchromosome CDS3298030 636 + 0.61478
NA SPO1483 cyclopropane-fatty-acyl-phospholipid synthase, putativechromosome CDS1556436 1158 + 0.610535
NA SPO2296 conserved hypothetical proteinchromosome CDS2433950 843 + 0.667853
NA SPO3812 carboxyl-terminal protease family proteinchromosome CDS4026640 1332 + 0.655405
NA SPO1202 cell division protein ftsQchromosome CDS1254230 1008 + 0.684524
NA SPO3756 OmpA domain proteinchromosome CDS3966762 915 - 0.677596
NA SPO3241 Asp/Glu/Hydantoin racemase family proteinchromosome CDS3444135 747 + 0.674699
NA SPO2649 conserved domain proteinchromosome CDS2802015 2382 + 0.653652
NA SPO1536 glycosyltransferase, group 1chromosome CDS1618119 1236 + 0.690129
NA SPO3385 glycosyl transferase, family 25chromosome CDS3587617 822 - 0.66545
NA SPO1843 SIS domain proteinchromosome CDS1961226 1032 + 0.677326
NA SPO0553 glycosyltransferase, group 1chromosome CDS548683 1080 - 0.7
NA SPO1462 OmpA family proteinchromosome CDS1534089 1248 + 0.642628
NA SPO0169 transglycosylase, Slt familychromosome CDS189622 699 + 0.656652
NA SPO3902 transglycosylase domain proteinchromosome CDS3871988 639 + 0.508607
NA SPO1533 glycosyl transferase, group 1 family proteinchromosome CDS1614257 1143 - 0.715661
NA SPO1354 peptidoglycan binding domain proteinchromosome CDS1415023 1920 - 0.679167
NA SPO3631 OmpA domain proteinchromosome CDS3832996 1914 + 0.672936
NA SPO3084 transglycosylase, Slt familychromosome CDS3293700 939 - 0.677316
NA SPO2651 glycosyl transferase, group 2 family proteinchromosome CDS2805105 1080 + 0.622222
NA SPO0851 glycosyl transferase, WecB/TagA/CpsF familychromosome CDS899799 753 + 0.715803
NA SPO0852 oxidoreductase, Gfo/Idh/MocA familychromosome CDS900554 2100 - 0.699048
NA SPO2686 LysM domain/M23/M37 peptidasechromosome CDS2837760 1191 - 0.679261
NA SPO0695 hypothetical proteinchromosome CDS725430 294 - 0.591837
NA SPO1922 mechanosensitive ion channel family proteinchromosome CDS2043404 2433 + 0.64365
NA SPO3617 peptidoglycan-binding protein, putativechromosome CDS3821354 1158 - 0.676166
NA SPO3461 flagellar protein FlgJ, putativechromosome CDS3663933 288 - 0.607639
NA SPO0853 glycosyl transferase, group 2 family proteinchromosome CDS902661 966 - 0.693582
NA SPO2251 conserved hypothetical proteinchromosome CDS2397417 447 - 0.695749
NA SPO2230 peptidase, M23/M37 familychromosome CDS2373484 1494 + 0.631861
NA SPO2289 conserved hypothetical proteinchromosome CDS2426489 1263 - 0.632621
NA SPO3772 NADH ubiquinone oxidoreductase, putativechromosome CDS3984160 984 - 0.646341
NA SPO3415 outer membrane lipoprotein carrier protein LolA, putativechromosome CDS3616443 597 - 0.638191
NA SPO1240 type I secretion outer membrane protein, TolC familychromosome CDS1308540 1419 + 0.660324
NA SPO1181 penicillin-binding proteinchromosome CDS1232654 1788 + 0.661633
NA SPO0868 outer membrane protein, OMP85 familychromosome CDS923915 1806 - 0.669435
NA SPO0838 bacterial sugar transferasechromosome CDS874894 765 + 0.643137
NA SPO1107 phosphinothricin N-acetyltransferase, putativechromosome CDS1162556 495 + 0.666667
NA SPO3170 peptidase, M23/M37 familychromosome CDS3378391 741 + 0.673414
NA SPO2284 transglycosylase SLT domain proteinchromosome CDS2421897 474 + 0.668776
NA SPO2588 N-acetylmuramoyl-L-alanine amidase, family 3chromosome CDS2743172 1218 - 0.694581
NA SPOA0245 galactonate dehydratase, putativemegaplasmid CDS269349 1176 - 0.580782
NA SPO0557 mechanosensitive ion channel family proteinchromosome CDS553643 2448 + 0.618056
NA SPO1087 membrane protein, putativechromosome CDS1141865 1203 + 0.597672
NA SPO2715 GAF domain proteinchromosome CDS2871339 1854 - 0.66397
NA SPO1497 efflux transporter, RND family, MFP subunitchromosome CDS1572343 1251 + 0.685052
NA SPO1360 conserved domain proteinchromosome CDS1425556 645 + 0.658915
NA SPO2795 aminotransferase, DegT/DnrJ/EryC1/StrS familychromosome CDS2982241 1191 - 0.672544
NA SPO1538 chain length determinant proteinchromosome CDS1620325 1770 + 0.682486
NA SPO3444 3-deoxy-D-manno-octulosonic-acid transferase, putativechromosome CDS3647712 1230 + 0.671545
NA SPO1534 bacterial sugar transferasechromosome CDS1615633 1200 + 0.638333
NA SPOA0378 mandelate racemase/muconate lactonizing enzyme family proteinmegaplasmid CDS423926 1104 - 0.657609
NA SPO0111 conserved hypothetical proteinchromosome CDS116991 1065 - 0.610329
NA SPO2718 conserved hypothetical proteinchromosome CDS2898520 816 + 0.645833
NA SPO2846 conserved hypothetical proteinchromosome CDS3044170 843 - 0.706999
NA SPO3729 type I secretion membrane fusion protein, HlyD familychromosome CDS3942179 1302 + 0.630568
NA SPO0796 conserved hypothetical proteinchromosome CDS829953 924 - 0.666667
NA SPO2331 efflux transporter, RND family, MFP subunitchromosome CDS2467487 1305 + 0.689655
NA SPO2729 conserved hypothetical proteinchromosome CDS2917912 435 - 0.682759
NA SPOA0244 dihydrodipicolinate synthase family proteinmegaplasmid CDS268432 915 - 0.617486
NA SPO2738 lipoprotein, putativechromosome CDS2930229 882 + 0.68254
NA SPO3226 conserved hypothetical proteinchromosome CDS3430655 1164 + 0.658935
NA SPO0292 efflux transporter, RND family, MFP subunitchromosome CDS303491 1458 + 0.703018
NA SPO3488 peptidoglycan binding domain proteinchromosome CDS3691679 1272 + 0.677673
NA SPO2746 hypothetical proteinchromosome CDS2937384 1287 - 0.657343
NA SPOA0428 mandelate racemase/muconate lactonizing enzyme family proteinmegaplasmid CDS474485 1227 - 0.647922
NA SPO1116 hypothetical proteinchromosome CDS1170850 1926 - 0.533229
NA SPO2421 conserved hypothetical proteinchromosome CDS2572377 969 + 0.646027
NA SPO2310 lipid A biosynthesis lauroyl acyltransferase, putativechromosome CDS2445859 927 + 0.640777
NA SPO1540 glycosyl transferase, group 2chromosome CDS1623485 1143 + 0.688539
NA SPO0920 efflux transporter, RND family, MFP subunitchromosome CDS972903 1002 + 0.675649
NA SPO3606 mandelate racemase/muconate lactonizing enzyme family proteinchromosome CDS3812075 966 - 0.671843
NA SPO0843 glycosyl transferase, group 2 family proteinchromosome CDS880836 846 - 0.70331
NA SPO1195 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase, putativechromosome CDS1247394 1098 + 0.699454
NA SPO3258 glycosyl hydrolase, family 25chromosome CDS3457342 810 + 0.676543
NA SPO2231 conserved hypothetical proteinchromosome CDS2374967 516 + 0.674419
NA SPO1740 conserved hypothetical proteinchromosome CDS1857975 576 - 0.597222
NA SPO1247 glycosyl transferase, group 2 family proteinchromosome CDS1315573 681 + 0.71072
NA SPO1594 mandelate racemase/muconate lactonizing enzyme, putativechromosome CDS1689282 1107 + 0.666667
NA SPO0218 mechanosensitive ion channel family proteinchromosome CDS238133 1353 + 0.637842
NA SPO0036 conserved hypothetical proteinchromosome CDS36520 1023 - 0.584555
NA SPO1157 conserved hypothetical proteinchromosome CDS1209924 495 - 0.650505
NA SPO1295 aminotransferase, DegT/DnrJ/EryC1/StrS familychromosome CDS1358270 1293 - 0.643465
NA SPO2662 aspartate racemase, putativechromosome CDS2816520 1458 - 0.655693
NA SPO3871 nucleotidyltransferase family proteinchromosome CDS4084087 687 + 0.663755
NA SPO3725 penicillin-binding protein, 1A familychromosome CDS3936457 2367 + 0.651035
NA SPO3496 mechanosensitive ion channel family proteinchromosome CDS3700403 807 + 0.630731
NA SPO1526 efflux transporter, RND family, MFP subunitchromosome CDS1604822 981 - 0.692151
NA SPOA0062 aspartate racemasemegaplasmid CDS59846 699 - 0.683834
NA SPO3464 conserved domain proteinchromosome CDS3667512 870 + 0.658621
NA SPO0554 glycosyl transferase, group 1 family proteinchromosome CDS549765 1245 - 0.703614
NA SPO1398 efflux transporter, RND family, MFP subunitchromosome CDS1467292 1260 - 0.65873
NA SPO2414 mandelate racemase/muconate lactonizing enzyme family proteinchromosome CDS2565441 1170 - 0.652991
NA SPO1349 lipoprotein, putativechromosome CDS1409382 528 + 0.679924
NA SPO3555 transglycosylase, Slt familychromosome CDS3764834 2007 - 0.669158
NA SPO1058 acyltransferase, HtrB familychromosome CDS1109195 876 - 0.618721
NA SPO2882 dihydrodipicolinate synthase family proteinchromosome CDS3079198 909 + 0.644664
alr SPO2670 alanine racemasechromosome CDS2824893 1134 + 0.679894
catB SPO3667 muconate cycloisomerase Ichromosome CDS3869173 1131 - 0.640141
cfa SPO1918 cyclopropane-fatty-acyl-phospholipid synthasechromosome CDS2039492 1215 + 0.604115
cutE SPOA0010 apolipoprotein N-acyltransferasemegaplasmid CDS7823 1518 + 0.68643
dacB SPO0451 D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-al anine-endopeptidasechromosome CDS461960 1491 + 0.664655
dapA SPO3556 dihydrodipicolinate synthasechromosome CDS3766956 873 + 0.657503
ddlB SPO1201 D-alanine--D-alanine ligasechromosome CDS1253322 921 + 0.661238
gidB SPO0002 glucose-inhibited division protein Bchromosome CDS1866 615 + 0.544715
glmS SPOA0140 glucosamine--fructose-6-phosphate aminotransferase (isomerizing)megaplasmid CDS149971 1824 - 0.604715
glmU SPO2797 UDP-N-acetylglucosamine pyrophosphorylasechromosome CDS2984286 1353 + 0.659276
ispH SPO3207 4-hydroxy-3-methylbut-2-enyl diphosphate reductasechromosome CDS3417945 951 + 0.654048
kdsA SPO0947 3-deoxy-8-phosphooctulonate synthasechromosome CDS998339 834 - 0.642686
kdsB SPO0038 3-deoxy-D-manno-octulosonatecytidylyltransferasechromosome CDS38766 801 - 0.66417
kdtA SPO2800 3-deoxy-D-manno-octulosonic acid transferasechromosome CDS2987956 1299 + 0.701309
kpsC SPO1755 capsular polysaccharide export protein KpsCchromosome CDS1875208 2004 - 0.697106
kpsE SPO0948 capsular polysaccharide export inner-membrane protein, BexC/CtrB/KpsE familychromosome CDS999177 1179 - 0.613232
kpsS SPO1757 capsular polysaccharide export protein KpsSchromosome CDS1878444 1293 - 0.643465
kpsT SPO0949 capsular polysaccharide export ATP-binding proteinchromosome CDS1000873 714 - 0.589636
lepA SPO0983 GTP-binding protein LepAchromosome CDS1036159 1800 + 0.627222
lgt SPO0908 prolipoprotein diacylglyceryl transferasechromosome CDS963691 888 - 0.656532
lolE SPO1123 lipoprotein releasing system transmembrane protein LolEchromosome CDS1179969 1344 + 0.65625
lpcC SPO2801 lipopolysaccharide core biosynthesis mannosyltransferasechromosome CDS2989254 1056 + 0.701705
lpxA SPO1673 acyl-(acyl-carrier-protein)--UDP-N- acetylglucosamine O-acyltransferasechromosome CDS1780451 786 + 0.645038
lpxB SPO1675 lipid-A-disaccharide synthasechromosome CDS1781984 1206 + 0.700663
lpxC SPO1205 UDP-3-0-acyl N-acetylglucosamine deacetylasechromosome CDS1258819 921 + 0.654723
lpxD SPO1930 UDP-3-O-3-hydroxymyristoyl glucosamine N-acyltransferasechromosome CDS2057964 1092 + 0.662088
lpxK SPO3445 tetraacyldisaccharide 4'-kinasechromosome CDS3648928 1002 + 0.696607
lspA SPO3373 lipoprotein signal peptidasechromosome CDS3575045 474 - 0.607595
mepA SPO0124 murein endopeptidasechromosome CDS131966 882 + 0.639456
mraW SPO1179 S-adenosyl-methyltransferase MraWchromosome CDS1231297 996 + 0.675703
mraY SPO1184 phospho-N-acetylmuramoyl-pentapeptide-transferasechromosome CDS1237348 1083 + 0.639889
mrca SPO2587 penicillin-binding protein 1Achromosome CDS2740529 2487 - 0.643345
mreC SPO0419 rod shape-determining protein MreCchromosome CDS432207 936 - 0.679487
mscL SPO3495 large conductance mechanosensitive channel proteinchromosome CDS3699884 432 + 0.613426
mtgA SPO3766 monofunctional biosynthetic peptidoglycan transglycosylasechromosome CDS3974726 729 - 0.646091
murA SPOA0137 UDP-N-acetylglucosamine1-carboxyvinyltransferasemegaplasmid CDS147666 1266 + 0.649289
murB SPO1200 UDP-N-acetylenolpyruvoylglucosamine reductasechromosome CDS1252296 927 + 0.666667
murC SPO1196 UDP-N-acetylmuramate--alanine ligasechromosome CDS1248488 1398 + 0.663805
murD SPO1187 UDP-N-acetylmuramoylalanine--D-glutamateligasechromosome CDS1240536 1401 + 0.683084
murE SPO1182 UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligasechromosome CDS1234460 1482 + 0.686235
murF SPO1183 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligasechromosome CDS1235938 1395 + 0.696057
murI SPO1875 glutamate racemasechromosome CDS1999017 810 + 0.661728
ompW SPO2792 outer membrane protein OmpWchromosome CDS2980256 606 + 0.605611
opuD SPO3186 glycine betaine transporterchromosome CDS3396229 1836 - 0.631808
pal SPO3108 peptidoglycan-associated lipoproteinchromosome CDS3319889 546 - 0.642857
pbpA SPO0417 penicillin-binding protein 2chromosome CDS429730 1947 - 0.671803
pbpC SPO0135 penicillin-binding protein 1Cchromosome CDS146554 2040 + 0.702941
phaP SPO1293 phasin, PhaPchromosome CDS1356992 447 + 0.58613
pqqD SPO1501 coenzyme PQQ synthesis protein Dchromosome CDS1577452 288 - 0.690972