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2024-05-05 13:45:47

Gene list

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COG category: Cell wall/membrane biogenesis
Organism: Yersinia pseudotuberculosis IP 32953, IP 32953

Number of genes found: 210

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Yersinia pseudotuberculosis IP 32953, IP 32953
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA YPTB3021 membrane-bound lytic murein transglycosylase A precursorchromosome CDS3560832 1173 - 0.483376
NA YPTB1381 conserved hypothetical proteinchromosome CDS1642224 1008 - 0.514881
NA YPTB1538 putative exported proteinchromosome CDS1849698 1857 + 0.480345
NA YPTB3718 putative sugar transferasechromosome CDS4413620 981 + 0.51682
NA YPTB0342 conserved hypothetical proteinchromosome CDS407666 651 - 0.53149
NA YPTB1435 General Bacterial Porin (GBP) family proteinchromosome CDS1722117 1083 - 0.452447
NA YPTB3248 Putative PAL/OmpA-family membrane protein.chromosome CDS3826630 1737 - 0.625216
NA YPTB0091 HlyD family (ABC transporter associated) multidrug efflux pumpchromosome CDS104297 1293 - 0.392111
NA YPTB1390 putative HlyD family secretion proteinchromosome CDS1655275 1116 + 0.490143
NA YPTB3717 putative glycosyl transferasechromosome CDS4412538 990 + 0.494949
NA YPTB2260 putative mandelate racemase / muconate lactonizing proteinchromosome CDS2671018 975 - 0.521026
NA YPTB2170 putative ABC associated RTX toxin transporter, HlyD/MFP familychromosome CDS2550979 1371 + 0.484318
NA YPTB2996 putative membrane proteinchromosome CDS3534805 1356 - 0.472714
NA YPTB1570 conserved hypothetical proteinchromosome CDS1893005 1140 + 0.427193
NA YPTB2995 putative surface antigenchromosome CDS3532381 2388 - 0.468174
NA YPTB2346 putative membrane-bound lytic murein transglycosylasechromosome CDS2767871 663 - 0.470588
NA YPTB0906 conserved hypothetical proteinchromosome CDS1093994 759 + 0.429513
NA YPTB1244 General Bacterial Porin (GBP) family proteinchromosome CDS1482518 1116 - 0.416667
NA YPTB2159 conserved hypothetical proteinchromosome CDS2538824 999 + 0.49049
NA YPTB0452 putative exported proteinchromosome CDS535068 1737 + 0.512953
NA YPTB2045 putative M23/M37 peptidase-family proteinchromosome CDS2409020 1317 + 0.486712
NA YPTB1061 putative pertactin family virulence factor/autotransporterchromosome CDS1268552 1917 - 0.472613
NA YPTB3591 putative phosphosugar isomerase/binding proteinchromosome CDS4271387 606 - 0.506601
NA YPTB1261 outer membrane protein C, porinchromosome CDS1509158 1125 + 0.440889
NA YPTB1563 putative exported proteinchromosome CDS1881839 828 + 0.513285
NA YPTB3621 putative exported proteinchromosome CDS4307136 4269 - 0.538065
NA YPTB2695 putative lipoproteinchromosome CDS3184928 672 - 0.473214
NA YPTB3615 putative membrane proteinchromosome CDS4297794 4563 - 0.554241
NA YPTB1972 putative dehydrogenasechromosome CDS2324432 1017 + 0.53884
NA YPTB0117 putative tonB proteinchromosome CDS139023 804 + 0.470149
NA YPTB2531 putative BCCT-family carnitine transporterchromosome CDS2995550 1665 - 0.485285
NA YPTB2511 putative mechanosensitive ion channelchromosome CDS2965756 1245 + 0.505221
NA YPTB2056 putative lipoproteinchromosome CDS2422224 606 + 0.488449
NA YPTB3282 Conserved hypothetical proteinchromosome CDS3866709 4485 - 0.551171
NA YPTB2100 putative nucleotide sugar dehydrogenasechromosome CDS2473820 1347 + 0.426875
NA YPTB3827 putative exported proteinchromosome CDS4567110 2214 - 0.528004
NA YPTB1514 putative exported proteinchromosome CDS1817900 1263 - 0.322249
NA YPTB2450 conserved hypothetical proteinchromosome CDS2897252 867 - 0.497117
NA YPTB0565 putative lipoprotein, heavy metal/multidrug efflux, MFP familychromosome CDS664956 1083 + 0.511542
NA YPTB1407 hypothetical proteinchromosome CDS1680829 675 + 0.355556
NA YPTB2625 putative aspartate/glutamate racemasechromosome CDS3101944 696 + 0.468391
NA YPTB0591 putative OmpA/OmpF family outer membrane porinchromosome CDS697195 507 - 0.467456
NA YPTB2198 (AF335466) unknown [Yersinia pseudotuberculosis]chromosome CDS2588957 1599 - 0.556598
NA YPTB0422 putative N-acetylmuramoyl-L-alanine amidase-family proteinchromosome CDS504490 1782 + 0.508979
NA YPTB3107 putative lipoproteinchromosome CDS3668877 858 + 0.488345
NA YPTB2678 putative OMPA family outer membrane porinchromosome CDS3165183 1683 + 0.458705
NA YPTB3438 Possible Outer Membrane Factor (OMF) Family efflux porinchromosome CDS4079197 1527 + 0.521284
NA YPTB1975 putative dehydrogenasechromosome CDS2327715 912 + 0.493421
NA YPTB1236 ABC type periplasmic choline/glycine/betaine binding proteinchromosome CDS1472476 933 + 0.483387
NA YPTB3194 MscS family mechanosensitive ion channelchromosome CDS3756404 870 - 0.501149
NA YPTB1005 conserved hypothetical proteinchromosome CDS1206693 984 + 0.273374
NA YPTB3307 HlyD family drug efflux proteinchromosome CDS3942590 1311 - 0.527841
NA YPTB3958 putative membrane proteinchromosome CDS4723910 672 - 0.41369
NA YPTB2003 putative lipoproteinchromosome CDS2358886 624 - 0.482372
NA YPTB2391 conserved hypothetical proteinchromosome CDS2819357 249 - 0.437751
NA YPTB2720 putative HlyD family (ABC efflux pump associated) secretion proteinchromosome CDS3213667 1206 + 0.498342
NA YPTB2746 putative pertactin family virulence factor/autotransporterchromosome CDS3245878 2211 + 0.448213
NA YPTB0507 conserved hypothetical proteinchromosome CDS597802 639 + 0.558685
NA YPTB1212 putative HlyD family multidrug secretion proteinchromosome CDS1445185 987 - 0.524823
NA YPTB1487 OmpA family of outer membrane porinschromosome CDS1779932 1737 + 0.626367
NA YPTB2233 putative insecticidal toxin complexchromosome CDS2636474 2985 + 0.541709
NA YPTB0491 multidrug efflux protein, membrane fusion (MFP) familychromosome CDS578155 1161 + 0.525409
NA YPTB0443 conserved hypothetical proteinchromosome CDS525546 741 - 0.51417
NA YPTB0555 putative lipopolysaccharide core biosynthesis proteinchromosome CDS655984 1041 + 0.466859
NA YPTB2298 putative exported proteinchromosome CDS2711042 867 + 0.449827
NA YPTB2392 putative alanine racemasechromosome CDS2820749 1230 + 0.450406
NA YPTB0556 putative O-antigen biosynthesis proteinchromosome CDS657072 1227 + 0.460473
NA YPTB2880 putative transglycosylase and solute binding proteinchromosome CDS3411607 1542 + 0.490921
NA YPTB3022 N-acetylmuramoyl-L-alanine amidase AmiC precursorchromosome CDS3562907 1251 - 0.466027
NA YPTB0116 HlyD family secretion proteinchromosome CDS137630 1329 + 0.484575
NA YPTB1976 putative glycosyl transferasechromosome CDS2328626 1155 + 0.479654
NA YPTB2423 conserved hypothetical proteinchromosome CDS2865131 858 + 0.506993
NA YPTB1382 putative membrane proteinchromosome CDS1643331 1491 - 0.525151
NA YPTB3557 putative insecticidal toxinchromosome CDS4230131 2859 + 0.47639
NA YPTB2063 putative lipoproteinchromosome CDS2429619 1086 + 0.466851
NA YPTB1577 putative racemasechromosome CDS1903206 1203 + 0.510391
NA YPTB3077 putative phosphosugar isomerasechromosome CDS3631612 1167 + 0.470437
NA YPTB2776 putative carboxypeptidasechromosome CDS3280513 678 + 0.50885
NA YPTB2081 putative exported proteinchromosome CDS2452403 771 + 0.465629
BspA YPTB0415 Small Conductance Mechanosensitive Ion Channel (MscS) Family Proteinchromosome CDS493479 3360 - 0.519643
acrA YPTB0984 acridine efflux pump, membrane fusion (MFP/HlyD) family proteinchromosome CDS1182021 1188 - 0.490741
ail YPTB2867 attachment invasion locus proteinchromosome CDS3392902 549 - 0.406193
alr YPTB0376 alanine racemase (biosynthetic)chromosome CDS449597 1080 + 0.547222
betT YPTB1198 high-affinity choline transport proteinchromosome CDS1427078 2049 + 0.493899
cfa YPTB2303 cyclopropane-fatty-acyl-phospholipid synthasechromosome CDS2717392 1152 + 0.466146
cutE YPTB1109 putative apolipoprotein N-acyltransferasechromosome CDS1327281 1548 - 0.511628
cutF YPTB2979 putative copper homeostasis lipoproteinchromosome CDS3517624 684 - 0.432749
dacA YPTB1094 putative penicillin-binding protein 5chromosome CDS1310535 1203 - 0.489609
dacB YPTB0470 penicillin-binding protein 4 precursorchromosome CDS554562 1449 - 0.482402
dacC YPTB1351 D-alanyl-D-alanine carboxypeptidasechromosome CDS1610450 1206 + 0.480099
dapA YPTB2783 dihydrodipicolinate synthasechromosome CDS3287247 900 - 0.494444
dapX YPTB2782 lipoproteinchromosome CDS3286171 1059 - 0.512748
ddg YPTB3597 putative membrane proteinchromosome CDS4279009 990 + 0.510101
ddhA YPTB0999 glucose-1-phosphate cytidylyltransferasechromosome CDS1199878 786 + 0.436387
ddhB YPTB1000 CDP-glucose 4,6-dehydratasechromosome CDS1200668 1074 + 0.458101
ddhC YPTB1001 putativeCDP-4-keto-6-deoxy-D-glucose-3-dehydrata sechromosome CDS1201759 1314 + 0.42618
ddlB YPTB0690 D-alanine-D-alanine ligase B, affects cell divisionchromosome CDS828076 921 + 0.502714
dgkA YPTB0369 diacylglycerol kinasechromosome CDS442586 372 + 0.475806
fcl YPTB1010 GDP-fucose synthetasechromosome CDS1212612 966 + 0.415114
flgJ YPTB1680 flagellar protein FlgJchromosome CDS2032272 945 + 0.540741
flgJ YPTB3332 Putative flagellar proteinchromosome CDS3966598 294 - 0.496599
fliM YPTB3351 Putative flagellar motor switch protein.chromosome CDS3982458 912 + 0.376096
ftsI YPTB0682 division specific transpeptidase, penicillin-binding protein 3chromosome CDS817196 1764 + 0.530612
ftsQ YPTB0691 cell division protein; ingrowth of wall at septumchromosome CDS828998 828 + 0.5157
galE YPTB1171 UDP-glucose 4-epimerasechromosome CDS1397837 1017 - 0.522124
galF YPTB1552 UTP-glucose-1-phosphate uridylyltransferasechromosome CDS1870387 894 + 0.486577
galU YPTB1551 UTP-glucose-1-phosphate uridylyltransferasechromosome CDS1869413 891 + 0.47138
gidB YPTB3975 glucose inhibited division protein Bchromosome CDS4741906 621 - 0.457327
glmS YPTB3964 glucosamine--fructose-6-phosphateaminotransferas echromosome CDS4730141 1830 - 0.472678
glmU YPTB3965 UDP-N-acetylglucosamine pyrophosphorylasechromosome CDS4732171 1371 - 0.475565
gmd YPTB1009 GDP-D-mannose dehydratasechromosome CDS1211485 1122 + 0.409091
hasF YPTB3400 ABC-transporter outer membrane efflux componentchromosome CDS4037356 1395 + 0.469534
hmsR YPTB1951 haemin storage system, HmsR proteinchromosome CDS2296258 1374 + 0.509461
htrB YPTB2490 lipid A biosynthesis lauroyl acyltransferasechromosome CDS2936394 921 + 0.5038
ibeB YPTB0493 probable outer membrane multidrug efflux lipoprotein, OMF familychromosome CDS582446 1407 + 0.511016
imp YPTB0636 organic solvent tolerancechromosome CDS752607 2343 - 0.478446
kdsA YPTB2009 2-dehydro-3-deoxyphosphooctonate aldolasechromosome CDS2364389 855 + 0.502924
kdsB YPTB1425 putative 3-deoxy-manno-octulosonate cytidylyltransferasechromosome CDS1706559 753 + 0.50996
kdtA YPTB0052 3-deoxy-D-manno-octulosonic-acid transferasechromosome CDS62787 1278 - 0.503912
kdtX YPTB0051 lipopolysaccharide core biosynthesis glycosyl transferasechromosome CDS62004 783 - 0.467433
kefA YPTB0987 MscS family mechanosensitive channelchromosome CDS1184613 3420 + 0.466959
lepA YPTB2892 putative GTP-binding elongation factorchromosome CDS3422285 1800 - 0.456111
lgt YPTB3034 prolipoprotein diacylglyceryl transferasechromosome CDS3581036 873 - 0.4937
lolA YPTB1402 putative outer-membrane lipoproteins carrier proteinchromosome CDS1674015 609 + 0.45156
lolC YPTB2442 ABC transporter/lipoprotein releasing system, permease subunit lolCchromosome CDS2886085 1203 - 0.521197
lolE YPTB2440 ABC tranporter/lipoprotein releasing system, permease subunit lolEchromosome CDS2884141 1248 - 0.487981
lpp YPTB2307 major outer membrane lipoproteinchromosome CDS2723881 237 + 0.464135
lpxA YPTB2991 acyl-[acyl-carrier-protein]--UDP-N- acetylglucosam ine O-acyl...chromosome CDS3529220 789 - 0.471483
lpxB YPTB2990 lipid-A-disaccharide synthasechromosome CDS3528032 1185 - 0.490295
lpxC YPTB0694 UDP-3-O-acyl N-acetylglucosamine deacetylasechromosome CDS832429 924 + 0.459957
lpxD YPTB2993 UDP-3-o-[3-hydroxymyristoyl] glucosamine N-acyltransferasechromosome CDS3530700 1023 - 0.462366
lpxK YPTB1421 tetraacyldisaccharide 4'-kinasechromosome CDS1702465 987 + 0.529889
lspA YPTB0618 prolipoprotein signal peptidase (SPase II)chromosome CDS734861 510 + 0.456863
lytB YPTB0620 regulates the activity of guanosine 3',5'-bispyrophosphate synthetase I (RelA)chromosome CDS735877 954 + 0.493711
mdoH YPTB2493 membrane glycosyltransferasechromosome CDS2940161 2610 - 0.527586
mepA YPTB2631 putative penicillin-insensitive murein endopeptidasechromosome CDS3108601 789 - 0.533587
mltB YPTB2681 putative membrane-bound lytic murein transglycosylase Bchromosome CDS3169588 1095 - 0.519635
mltC YPTB3226 membrane-bound lytic murein transglycosylase Cchromosome CDS3798209 1089 + 0.461892
mltD YPTB2968 membrane-bound lytic murein transglycosylase D precursorchromosome CDS3500983 1428 + 0.471989
mpl YPTB0457 UDP-N-acetylmuramate:L-Ala-D-Glu-meso- diaminopime late ligasechromosome CDS543127 1386 + 0.501443
mraW YPTB0680 S-adenosyl-dependent methyl transferasechromosome CDS815854 963 + 0.517134
mraY YPTB0685 phospho-N-acetylmuramoyl-pentapeptidetransferasechromosome CDS821800 1083 + 0.497692
mrcA YPTB3756 penicillin-binding protein (penicillin-insensitive transglyco...chromosome CDS4455459 2556 + 0.517214
mrcB YPTB0738 bifunctional multimodular MrcB: tglycosyl transferase of penicillin-binding protein 1bchromosome CDS885265 2481 + 0.533656
mreC YPTB3564 rod shape-determining protein MreCchromosome CDS4242081 996 - 0.51004
mreD YPTB3563 rod shape-determining protein MreDchromosome CDS4241596 489 - 0.482618
msbB YPTB2046 lipid A biosynthesis acyltransferasechromosome CDS2410603 963 + 0.470405
mscL YPTB3669 mechanosensitive ion channelchromosome CDS4382166 414 + 0.42029
mtgA YPTB3497 monofunctional biosynthetic peptidoglycan transglycosylasechromosome CDS4162565 726 - 0.501377
murA YPTB3513 UDP-N-acetylglucosamine1-carboxyvinyltransferasechromosome CDS4183114 1263 - 0.505938
murB YPTB0272 UDP-N-acetylenolpyruvoylglucosamine reductasechromosome CDS326089 1038 + 0.436416
murC YPTB0689 L-alanine adding enzyme, UDP-N-acetyl-muramate:alanine ligasechromosome CDS826608 1476 + 0.519648
murD YPTB0686 UDP-N-acetylmuramoylalanine-D-glutamate ligasechromosome CDS822885 1317 + 0.536067
murE YPTB0683 UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligasechromosome CDS818961 1473 + 0.536999
murF YPTB0684 D-alanine:D-alanine-adding enzymechromosome CDS820430 1377 + 0.520697
murG YPTB0688 UDP-N-acetylglucosamine:N-acetylmuramyl- (pentapep tide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferasechromosome CDS825400 1071 + 0.55929
murI YPTB0126 putative glutamate racemasechromosome CDS149486 864 + 0.482639
nanA YPTB2742 probable N-acetylneuraminate lyasechromosome CDS3241854 894 + 0.487696
nlpC YPTB2323 putative lipoproteinchromosome CDS2745844 465 - 0.466667
nlpD YPTB0775 lipoproteinchromosome CDS929763 1002 + 0.48503
ompA YPTB1453 putative outer membrane porin A proteinchromosome CDS1746843 1062 - 0.501883
ompC2 YPTB1964 outer membrane protein C2, porinchromosome CDS2313838 1083 + 0.44506
ompH YPTB2994 cationic 19 kDa outer membrane protein precursorchromosome CDS3531726 549 - 0.449909
ompW YPTB2123 putative exported proteinchromosome CDS2500233 636 + 0.460692
ompX YPTB2542 putative outer membrane proteinchromosome CDS3009848 525 - 0.485714
pal YPTB1160 peptidoglycan-associated lipoprotein Pal, OmpA family of porinschromosome CDS1385473 507 + 0.47929
pbpA YPTB1097 penicillin-binding protein 2chromosome CDS1314530 1896 - 0.492616
pbpG YPTB1217 penicillin-binding protein 7 precursorchromosome CDS1451812 936 + 0.457265
pcp YPTB3584 outer membrane lipoproteinchromosome CDS4265017 468 + 0.547009
pla2 YPTB1266 putative outer membrane-associated proteasechromosome CDS1517662 936 - 0.400641
pldA YPTB0201 phospholipase Achromosome CDS241422 879 + 0.459613
pmrF YPTB2329 probable glycosyl transferasechromosome CDS2751875 984 - 0.462398
pmrH YPTB2330 conserved hypothteical proteinchromosome CDS2752845 1155 - 0.482251
pmrK YPTB2326 dolichyl-phosphate-mannose-proteinmannosyltransf erase-family...chromosome CDS2747312 1665 - 0.451051
ponC YPTB1068 putative bifunctional penicillin-binding protein 1Cchromosome CDS1275429 2364 - 0.525804
prc YPTB2376 tail-specific protease precursorchromosome CDS2801394 2079 - 0.473304
prt YPTB1002 paratose synthasechromosome CDS1203109 858 + 0.356643
rfaC YPTB0053 lipopolysaccharide heptosyltransferase-1chromosome CDS64484 966 - 0.506211
rfaD YPTB0055 ADP-L-glycero-D-manno-heptose-6-epimerasechromosome CDS66544 933 - 0.451233
rfaE YPTB3407 ADP-heptose synthasechromosome CDS4045425 1431 - 0.5297
rfaF YPTB0054 ADP-heptose--LPS heptosyltransferase IIchromosome CDS65449 1065 - 0.51831
rfe YPTB0168 putative undecaprenyl-phosphate alpha-GlcNAc transferasechromosome CDS201257 1098 + 0.469035
rffA YPTB0175 putative lipopolysaccharide biosynthesis proteinchromosome CDS209146 1131 + 0.489832
rffD YPTB0171 putative UDP-glucose/GDP-mannose dehydrogenasechromosome CDS204927 1263 + 0.498812
rffE YPTB0170 UDP-N-acetylglucosamine 2-epimerasechromosome CDS203800 1131 + 0.500442
rffG YPTB0172 dTDP-D-glucose-4,6-dehydratasechromosome CDS206186 1068 + 0.514981
rffH YPTB0173 glucose-1-phosphate thymidylyltransferasechromosome CDS207548 882 + 0.494331
rlpA YPTB1095 rare lipoprotein A precursorchromosome CDS1312140 1083 - 0.528163
rlpB YPTB1102 rare lipoprotein B precursorchromosome CDS1319204 624 - 0.520833
sepC YPTB2294 insecticial toxinchromosome CDS2705571 2949 - 0.547643
slt YPTB0595 putative lytic murein transglycosylase, solublechromosome CDS703299 1920 + 0.518229
slyB YPTB3313 Putative outer membrane lipoprotein Pcp precursorchromosome CDS3950902 468 + 0.574786
slyB YPTB2287 putative lipoproteinchromosome CDS2698405 468 + 0.538462
spr YPTB1309 putative lipoproteinchromosome CDS1560779 585 - 0.463248
tolA YPTB1158 TolA colicin import membrane proteinchromosome CDS1382844 1167 + 0.508141
tonB YPTB2117 TonB proteinchromosome CDS2495000 747 + 0.48996
triA pYptb0004 TriA proteinpYptb32953 CDS2572 618 + 0.47411
vcaJ YPTB2640 VacJ lipoproteinchromosome CDS3119984 765 - 0.515033
wbyJ YPTB1006 putative mannosyltransferasechromosome CDS1207848 1143 + 0.283465
wbyK YPTB1008 putative mannosyltransferasechromosome CDS1210456 1014 + 0.361933
wbyL YPTB1012 probable glycosyltransferasechromosome CDS1215152 744 + 0.322581
wecG YPTB0179 probable UDP-N-acetyl-D-mannosaminuronic acid transferasechromosome CDS214012 741 + 0.518219
wzz YPTB1014 O-antigen chain length determinantchromosome CDS1217321 1152 + 0.364583
wzzE YPTB0169 putative lipopolysaccharide biosynthesis proteinchromosome CDS202390 1062 + 0.483051
yajG YPTB0955 putative lipoproteinchromosome CDS1149449 579 - 0.46114
ydiY YPTB0838 putative exported proteinchromosome CDS1004596 768 - 0.464844
yegM YPTB2813 putitive HlyD family secretion proteinchromosome CDS3322793 1425 + 0.541754
yfeN YPTB0953 putative exported proteinchromosome CDS1146795 768 - 0.436198
yiaD YPTB3912 OmpA-OmpF family porinchromosome CDS4670192 660 - 0.540909
yohK YPTB1528 putative membrane proteinchromosome CDS1837822 696 - 0.482759