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2024-05-02 23:04:34

Gene list

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COG category: Cell wall/membrane biogenesis
Organism: Photorhabdus luminescens subsp. laumondii TTO1, TTO1

Number of genes found: 222

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Photorhabdus luminescens subsp. laumondii TTO1, TTO1
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA plu2499 chromosome CDS2942792 1014 - 0.391519
NA plu2196 chromosome CDS2582988 894 + 0.440716
NA plu2481 chromosome CDS2921745 546 - 0.391941
NA plu4516 chromosome CDS5274733 972 - 0.451646
NA plu3358 chromosome CDS3985997 330 - 0.306061
NA plu2500 chromosome CDS2943814 1344 - 0.419643
NA plu3813 chromosome CDS4480105 915 + 0.396721
NA plu0452 chromosome CDS479976 1080 + 0.326852
NA plu2480 chromosome CDS2920701 528 - 0.393939
NA plu3447 chromosome CDS4058478 618 - 0.482201
NA plu2646 chromosome CDS3099833 1479 - 0.469236
NA plu3359 chromosome CDS3986352 891 - 0.318743
NA plu4290 chromosome CDS5016724 990 - 0.410101
NA plu2645 chromosome CDS3098563 1278 - 0.498435
NA plu3004 chromosome CDS3505519 117 + 0.384615
NA plu3986 chromosome CDS4672068 945 - 0.424339
NA plu2351 chromosome CDS2770570 834 - 0.452038
NA plu2036 chromosome CDS2405342 1287 + 0.401709
NA plu4278 chromosome CDS5003270 525 - 0.481905
NA plu0581 chromosome CDS659158 1260 - 0.401587
NA plu2442 chromosome CDS2865701 5328 - 0.441066
NA plu3363 chromosome CDS3990110 1110 - 0.3
NA plu1548 chromosome CDS1852144 696 - 0.461207
NA plu4454 chromosome CDS5208699 363 + 0.460055
NA plu2512 chromosome CDS2955621 966 + 0.458592
NA plu2842 chromosome CDS3373241 633 + 0.418641
NA plu2671 chromosome CDS3174630 672 - 0.436012
NA plu4280 chromosome CDS5004208 4275 - 0.493099
NA plu2774 chromosome CDS3287940 1206 + 0.451907
NA plu0725 chromosome CDS834408 306 - 0.359477
NA plu4598 chromosome CDS5362881 3336 + 0.460731
NA plu3019 chromosome CDS3520609 756 + 0.339947
NA plu3010 chromosome CDS3509678 1098 - 0.31694
NA plu4291 chromosome CDS5018093 1197 + 0.395155
NA plu3615 chromosome CDS4263637 873 - 0.415808
NA plu3126 chromosome CDS3666606 1389 + 0.557955
NA plu2823 chromosome CDS3354698 864 - 0.434028
NA plu1972 chromosome CDS2346841 348 - 0.376437
NA plu0461 chromosome CDS490798 2016 - 0.449901
NA plu3750 chromosome CDS4422098 990 - 0.289899
NA plu4899 chromosome CDS5676263 1650 + 0.42303
NA plu0502 chromosome CDS549099 1422 - 0.355837
NA plu2222 chromosome CDS2609512 4878 + 0.396474
NA plu2133 chromosome CDS2516428 579 + 0.433506
NA plu2717 chromosome CDS3223263 801 - 0.454432
NA plu3512 chromosome CDS4104111 768 - 0.483073
NA plu2734 chromosome CDS3245424 1158 + 0.413644
NA plu2272 chromosome CDS2668735 1314 + 0.325723
NA plu3506 chromosome CDS4097665 660 - 0.443939
NA plu3351 chromosome CDS3979435 1215 - 0.289712
NA plu1530 chromosome CDS1831703 894 - 0.514541
NA plu1412 chromosome CDS1694887 1857 + 0.332795
NA plu1967 chromosome CDS2339359 549 - 0.375228
NA plu3967 chromosome CDS4651159 672 - 0.415179
NA plu3018 chromosome CDS3519441 957 + 0.280042
NA plu1840 chromosome CDS2187702 1077 + 0.350046
NA plu0759 chromosome CDS877336 1074 - 0.405028
NA plu1069 chromosome CDS1244457 573 + 0.502618
NA plu3361 chromosome CDS3987991 1215 - 0.303704
NA plu2723 chromosome CDS3230534 678 + 0.470501
NA plu0635 chromosome CDS728660 1416 + 0.549435
NA plu3015 chromosome CDS3515848 978 + 0.303681
NA plu3120 chromosome CDS3639471 4497 - 0.60974
NA plu1752 chromosome CDS2089773 1146 - 0.433682
NA plu3356 chromosome CDS3984366 510 - 0.317647
NA plu3392 chromosome CDS4015632 2121 - 0.458274
NA plu1571 chromosome CDS1877736 828 + 0.438406
NA plu4554 chromosome CDS5316829 1743 - 0.44062
NA plu2404 chromosome CDS2824291 1086 - 0.384899
NA plu3745 chromosome CDS4418227 1146 - 0.391798
NA plu3667 chromosome CDS4318213 438 + 0.394977
NA plu1605 chromosome CDS1916710 759 - 0.364954
NA plu0353 chromosome CDS372677 4416 - 0.584013
NA plu3874 chromosome CDS4550871 762 + 0.439633
NA plu2411 chromosome CDS2831210 780 - 0.302564
NA plu2245 chromosome CDS2639950 921 + 0.457112
NA plu3872 chromosome CDS4548510 579 + 0.417962
NA plu4224 chromosome CDS4943908 1677 - 0.517591
acrA plu3851 acriflavin resistance protein A precursorchromosome CDS4522214 1194 + 0.445561
agaS plu0834 Putative tagatose-6-phosphate ketose/aldose isomerasechromosome CDS966523 1224 + 0.506536
alr plu4358 alanine racemase, biosyntheticchromosome CDS5090477 1080 - 0.478704
amiB plu4584 N-acetylmuramoyl-L-alanine amidase AmiB precursorchromosome CDS5350356 1260 - 0.444444
amiC plu0645 N-acetylmuramoyl-L-alanine amidase precursorchromosome CDS742410 1245 + 0.436948
asmA plu1558 Protein AsmA precursorchromosome CDS1860416 1833 + 0.419531
cfa plu2608 Cyclopropane-fatty-acyl-phospholipid synthase (Cyclopropane fatty acid synthase) (CFA synthase)chromosome CDS3050495 1152 + 0.398438
cutF plu0691 Copper homeostasis protein CutF precursorchromosome CDS794390 672 + 0.41369
dacA plu1294 penicillin-binding protein 5 precursor (D-alanyl-D-alanine carboxypeptidase fraction A) (DD-peptidase) (DD-caroboxypeptidase) (PBP-5)chromosome CDS1502232 1170 - 0.442735
dacB plu4539 penicillin-binding protein 4 precursor (PBP-4) [Includes: D-alanyl-D-alanine carboxypeptidase (DD-peptidase) (DD-carboxypeptidase); D-alanyl-D-alaninechromosome CDS5300676 1527 + 0.442698
dacC plu1573 penicillin-binding protein 6 precursor (D-alanyl-D-alanine carboxypeptidase fraction C) (DD-pept (DD-carboxypeptidase) (PBP-6)idase)chromosome CDS1879624 1203 + 0.441397
dadX plu2560 Alanine racemase, catabolicchromosome CDS3004014 1089 - 0.445363
dapA plu2746 dihydrodipicolinate synthasechromosome CDS3257805 900 - 0.427778
ddl plu3652 D-alanine--D-alanine ligase B (D-alanylalanine synthetase) (D-Ala-D-Ala ligase)chromosome CDS4299898 921 - 0.453855
dgkA plu4375 diacylglycerol kinase (DAGK) (diglyceride kinase) (DGK)chromosome CDS5106930 372 - 0.430108
dltB plu4383 DltB protein for D-alanine esterification of lipoteichoic acid and wall teichoic acidchromosome CDS5117509 1125 + 0.281778
dltD plu4382 DltD protein for D-alanine esterification of lipoteichoic acid and wall teichoic acidchromosome CDS5116163 1203 + 0.274314
ecfE plu0679 Protease EcfEchromosome CDS778971 1356 + 0.449115
fepE plu3834 ferric enterobactin transport proteinchromosome CDS4504923 1104 - 0.349638
flgJ plu1923 Peptidoglycan hydrolase FlgJ (Muramidase flgJ)chromosome CDS2288270 945 + 0.485714
ftsI plu3660 peptidoglycan synthetase ftsI precursor (penicillin-binding protein 3) (PBP-3)chromosome CDS4309838 1767 - 0.4618
ftsQ plu3651 cell division proteinchromosome CDS4299090 807 - 0.477076
galE plu4831 UDP-glucose 4-epimerase (Galactowaldenase) (UDP-galactose 4-epimerase)chromosome CDS5605994 1023 + 0.403715
galU plu2501 UTP--glucose-1-phosphate uridylyltransferase (UDP-glucose pyrophosphorylase) (UDPGP)chromosome CDS2945181 993 - 0.392749
gidB plu0048 Glucose inhibited division protein Bchromosome CDS41966 621 - 0.413849
glmS plu0037 Glucosamine-fructose-6-phosphate aminotransferase [isomerizing] (hexosephosphate aminotransferase) (D-fructose-6-phosphate amidotransferase) (GFAT) (Lchromosome CDS30977 1830 - 0.430055
glmU plu0038 UDP-N-acetylglucosamine pyrophosphorylase (N-acetylglucosamine-1-phosphate uridyltransferase)chromosome CDS32914 1374 - 0.417758
hlpA plu0681 Histone-like protein HLP-1 precursorchromosome CDS782865 498 + 0.421687
htrB plu1814 lipid A biosynthesis lauroyl acyltransferase (heat shock protein B)chromosome CDS2161828 942 - 0.458599
imp plu0612 Organic solvent tolerance protein precursorchromosome CDS694318 2325 - 0.429247
kdsA plu2073 2-dehydro-3-deoxyphosphooctonate aldolase (Phospho-2-dehydro-3-deoxyoctonate aldolase) (3-deoxy-D-manno-octulosonic acid 8-phosphate synthetase) (KDO-chromosome CDS2455044 855 + 0.48538
kdsB plu1634 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) (CMP-2-keto-3-deoxyoctulosonic acid synthetase) (CKS)chromosome CDS1951447 750 + 0.453333
kdtA plu4854 3-deoxy-D-manno-octulosonic-acid transferase (KDO transferase)chromosome CDS5629035 1278 + 0.483568
kdtX plu4855 Lipopolysaccharide core biosynthesis glycosyl transferase KdtXchromosome CDS5630313 774 + 0.439276
lepA plu3342 GTP-binding protein LepAchromosome CDS3969283 1797 - 0.454647
lgt plu0622 Prolipoprotein diacylglyceryl transferasechromosome CDS708772 876 + 0.454338
lnt plu1308 apolipoprotein N-acyltransferase (ALP N-acyltransferase) (copper homeostasis protein CutE)chromosome CDS1517307 1530 - 0.462745
lolA plu1602 outer-membrane lipoproteins carrier protein precursor (P20)chromosome CDS1913131 612 + 0.410131
lolB plu2068 Outer-membrane lipoprotein LolB precursorchromosome CDS2449867 627 - 0.424242
lolC plu2814 Lipoprotein releasing system transmembrane protein lolCchromosome CDS3340218 1203 - 0.482959
lolE plu2812 Lipoprotein releasing system transmembrane protein lolEchromosome CDS3338274 1248 - 0.449519
lpp plu2615 major outer membrane lipoprotein precursor (murein-lipoprotein)chromosome CDS3059515 237 + 0.43038
lpxA plu0684 acyl-[acyl-carrier-protein]--UDP-N- acetylglucosam ine O-acyltransferasechromosome CDS785013 789 + 0.425856
lpxB plu0685 lipid A disaccharide synthasechromosome CDS785821 1170 + 0.44188
lpxC plu3648 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase (UDP-3-O-acyl-GlcNAc deacetylase) (EnvA protein)chromosome CDS4295553 933 - 0.445874
lpxD plu0682 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferasechromosome CDS783366 1029 + 0.44412
lpxK plu1631 tetraacyldisaccharide 4'-kinase (lipid A 4'-kinase)chromosome CDS1949093 996 + 0.473896
lspA plu0592 Lipoprotein signal peptidase (Prolipoprotein signal peptidase) (Signal peptidase II) (SPase II)chromosome CDS674775 504 + 0.428571
lytB plu0594 penicillin tolerance proteinchromosome CDS675735 954 + 0.451782
macA plu1590 Macrolide-specific efflux protein MacA precursorchromosome CDS1896237 1113 + 0.439353
mipA plu2559 MltA-interacting protein precursorchromosome CDS3002917 753 - 0.367862
mltA plu0648 Membrane-bound lytic murein transglycosylase A precursor (Murein hydrolase A)chromosome CDS744928 1098 + 0.449909
mltC plu1167 membrane-bound lytic murein transglycosylase C precursor (murein hydrolase C)chromosome CDS1352053 1074 - 0.397579
mltD plu0939 membrane-bound lytic murein transglycosylase D precursor (murein hydrolase D)chromosome CDS1081243 1362 - 0.441263
mpl plu4549 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- me so-diaminopimelate ligase (Murein peptide ligase)chromosome CDS5308921 1371 - 0.447119
mraW plu3662 S-adenosyl-methyltransferase MraWchromosome CDS4311950 945 - 0.461376
mraY plu3657 phospho-N-acetylmuramoyl-pentapeptide- transferase (UDP-MurNAc-pentapeptide phosphotransferase)chromosome CDS4305912 1083 - 0.468144
mrcA plu0095 penicillin-binding protein 1A (PBP-1a) (PBP1a) (penicillin-binding protein A) [Includes: Penicillin-insensitive transglycosylase (Peptidoglycan TGase)chromosome CDS89067 2529 + 0.464215
mrcB plu0883 penicillin-binding protein 1Bchromosome CDS1009928 2457 + 0.485551
mreC plu4070 Rod shape-determining protein MreCchromosome CDS4754905 1035 - 0.444444
mreD plu4069 Rod shape-determining protein MreDchromosome CDS4754417 489 - 0.419223
msbB plu2117 Lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVa acyltransferasechromosome CDS2500275 969 + 0.45098
mtgA plu4006 monofunctional biosynthetic peptidoglycan transglycosylase (monofunctional TGase)chromosome CDS4691441 726 - 0.404959
murA plu4028 UDP-N-acetylglucosamine 1-carboxyvinyltransferase (enoylpyruvate transferase) (UDP-N-acetylglucosamine enolpyruvyltransferase) (EPT)chromosome CDS4720261 1266 - 0.481043
murB plu4733 UDP-N-acetylenolpyruvoylglucosamine reductase (UDP-N-acetylmuramate dehydrogenase)chromosome CDS5504465 1026 - 0.376218
murC plu3653 UDP-N-acetylmuramate--alanine ligase (UDP-N-acetylmuramoyl-L-alanine synthetase)chromosome CDS4300811 1476 - 0.466802
murD plu3656 UDP-N-acetylmuramoylalanine--D-glutamate ligase (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase) (D-glutamic acid adding enzyme)chromosome CDS4304599 1311 - 0.4836
murE plu3659 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diami nopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) (meso-diaminopimelate-adding enzyme)chromosome CDS4308364 1488 - 0.476478
murF plu3658 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diamino pimelate--D-alanyl-D-alanyl ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-addingchromosome CDS4306988 1380 - 0.455797
murG plu3654 pyrophosphoryl-undecaprenol N-acetylglucosamine transferase (undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase)chromosome CDS4302342 1068 - 0.479401
murI plu4734 glutamate racemasechromosome CDS5511305 864 - 0.394676
nlpB plu2745 Lipoprotein-34 precursorchromosome CDS3256739 1050 - 0.435238
nlpC plu2653 Probable lipoprotein NlpC precursorchromosome CDS3107082 486 - 0.417695
nlpD plu0718 Lipoprotein NlpD precursorchromosome CDS825590 996 + 0.440763
ompA plu1775 Outer membrane protein A precursor (Outer membrane protein II*)chromosome CDS2117794 1107 - 0.467028
ompN plu1751 Outer membrane protein N precursor (Porin OmpN)chromosome CDS2088101 1167 - 0.448158
ompW plu2478 Outer membrane protein W precursorchromosome CDS2918691 642 - 0.400312
pal plu1456 peptidoglycan-associated lipoprotein precursorchromosome CDS1748514 501 + 0.461078
pbgE1 plu2656 PbgE1 proteinchromosome CDS3108388 1662 - 0.410951
pbgP1 plu2660 PbgP1 proteinchromosome CDS3113911 1146 - 0.424084
pbgP2 plu2659 PbgP2 proteinchromosome CDS3112933 978 - 0.420245
pbpA plu1297 Penicillin-binding protein 2 (PBP-2)chromosome CDS1505739 1896 - 0.437764
pbpC plu1371 Penicillin-binding protein 1C (PBP-1C)chromosome CDS1649117 2322 + 0.509905
prc plu2682 tail-specific protease precursor (protease RE) (PRC protein)chromosome CDS3185279 2052 - 0.416179
prtC plu0658 Membrane Fusion Protein PrtCchromosome CDS756577 1335 + 0.472659
prtD plu0659 Outer membrane protein PrtDchromosome CDS757911 1377 + 0.458969
rfaC plu4849 lipopolysaccharide heptosyltransferase-1chromosome CDS5623198 966 + 0.451346
rfaD plu4847 ADP-L-glycero-D-manno-heptose-6-epimerase (ADP-glyceromanno-heptose 6-epimerase)chromosome CDS5621200 939 + 0.425985
rfaE plu3968 ADP-heptose synthasechromosome CDS4652420 1425 - 0.478596
rfaF plu4848 ADP-heptose--LPS heptosyltransferase IIchromosome CDS5622149 1050 + 0.473333
rfaG plu4852 Lipopolysaccharide core biosynthesis protein RfaG (Glucosyltransferase I)chromosome CDS5626615 1131 - 0.429708
rfaL plu4858 O-antigen ligase RfaLchromosome CDS5632567 1227 + 0.379788
rfaQ plu4853 Lipopolysaccharide core biosynthesis glycosyl transferase RfaQchromosome CDS5627742 1065 - 0.394366
rffG plu4658 dTDP-glucose 4,6-dehydratasechromosome CDS5429921 1071 - 0.450047
rffH plu4657 glucose-1-phosphate thymidylyltransferase (dTDP-glucose synthase) (dTDP-glucose pyrophosphorylase)chromosome CDS5429018 882 - 0.444444
rlpA plu1295 Rare lipoprotein A precursorchromosome CDS1503606 999 - 0.473473
rlpB plu1302 Rare lipoprotein B precursorchromosome CDS1510271 549 - 0.489982
rtxD plu1332 RTX toxin ABC transporter protein (MFP) RtxDchromosome CDS1549066 1356 - 0.452802
slt plu0556 Soluble lytic murein transglycosylase precursor (Slt70) (Exomuramidase)chromosome CDS629144 1917 + 0.453312
slyB plu2599 Outer membrane lipoprotein SlyB precursorchromosome CDS3042481 471 + 0.462845
spr plu2864 Lipoprotein spr precursorchromosome CDS3399202 591 + 0.450085
tccC1 plu4167 Insecticidal toxin complex protein TccC1chromosome CDS4866097 3132 - 0.519476
tccC2 plu0960 Insecticidal toxin complex protein TccC2chromosome CDS1099701 2748 - 0.444323
tccC3 plu0967 Insecticidal toxin complex protein TccC3chromosome CDS1128640 2913 - 0.445932
tccC4 plu0976 Insecticidal toxin complex protein TccC4chromosome CDS1157036 2880 - 0.445486
tccC5 plu0964 Insecticidal toxin complex protein TccC5chromosome CDS1116860 2817 - 0.450834
tccC6 plu4182 Insecticidal toxin complex protein TccC6chromosome CDS4890900 2898 + 0.438923
tccC7 plu4488 Insecticidal toxin complex protein TccC7chromosome CDS5242615 2811 + 0.458911
tolA plu1454 TolA proteinchromosome CDS1745895 1071 + 0.473389
tolC plu3954 Outer membrane protein precursor TolCchromosome CDS4641003 1374 + 0.435953
tonB plu2485 TonB proteinchromosome CDS2925635 681 - 0.434655
vacJ plu3203 VacJ lipoprotein precursorchromosome CDS3770060 753 - 0.450199
walM plu4859 WalM proteinchromosome CDS5633827 1176 - 0.40051
walN plu4860 WalN proteinchromosome CDS5634983 1119 - 0.436104
walO plu4861 WalO proteinchromosome CDS5636082 1023 - 0.426197
walR plu4862 WalR proteinchromosome CDS5637292 1122 - 0.41533
walW plu4851 WalW proteinchromosome CDS5625515 1104 - 0.370471
wblA plu4796 WblA proteinchromosome CDS5569740 1311 + 0.440885
wblD plu4799 WblD proteinchromosome CDS5572735 1071 + 0.455649
wblF plu4808 WblF proteinchromosome CDS5583121 612 + 0.336601
wblG plu4803 WblG proteinchromosome CDS5577358 1104 + 0.349638
wblH plu4804 WblH proteinchromosome CDS5578467 1071 + 0.390289
wblI plu4805 WblI proteinchromosome CDS5579534 1239 + 0.37046
wblJ plu4806 WblJ proteinchromosome CDS5580942 1011 + 0.284866
wblK plu4807 WblK proteinchromosome CDS5581963 1158 + 0.386874
wblM plu4809 WblM proteinchromosome CDS5583742 1875 + 0.358933
wblO plu4811 WblO proteinchromosome CDS5587761 873 + 0.38488
wblQ plu4813 WblQ proteinchromosome CDS5589089 1128 + 0.335106
wblS plu4818 WblS proteinchromosome CDS5595230 1002 + 0.249501
wblT plu4819 WblT proteinchromosome CDS5596742 792 + 0.282828
wblU plu4820 WblU proteinchromosome CDS5597543 1110 + 0.292793
wblV plu4821 WblV proteinchromosome CDS5598660 246 + 0.357724
wblY plu4824 WblY proteinchromosome CDS5601139 678 + 0.30531
wecA plu4662 undecaprenyl-phosphatealpha-N-acetylglucosaminyltransferasechromosome CDS5434603 1086 - 0.416206
wecB plu4660 UDP-N-acetylglucosamine 2-epimerase (UDP-GlcNAc-2-epimerase)chromosome CDS5432270 1122 - 0.447415
wecC plu4659 UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase (UDP-ManNAca dehydrogenase)chromosome CDS5430988 1263 - 0.442597
wecE plu4655 Lipopolysaccharide biosynthesis protein WecEchromosome CDS5427189 1131 - 0.436782
wecG plu4651 UDP-N-acetyl-D-mannosaminuronic acid transferase (UDP-ManNAcA transferase)chromosome CDS5422751 738 - 0.441734
wzc plu3743 Tyrosine-protein kinase Wzcchromosome CDS4415590 2148 - 0.376164
wzzE plu4661 Lipopolysaccharide biosynthesis protein WzzEchromosome CDS5433518 1056 - 0.442235
yaeT plu0680 Probable outer membrane protein precursor YaeTchromosome CDS780361 2394 + 0.433584
ybhG plu1509 Membrane Fusion Protein (MFP) YbhGchromosome CDS1808388 993 - 0.454179
yebA plu2116 Putative peptidase precursor protein YebAchromosome CDS2498816 1308 + 0.464832
yfhD plu3318 Putative periplasmic binding transport protein YfhDchromosome CDS3936207 1347 + 0.432814