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2024-05-09 01:27:56

Gene list

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COG category: Cell wall/membrane biogenesis
Organism: Lactobacillus plantarum WCFS1, WCFS1

Number of genes found: 172

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Lactobacillus plantarum WCFS1, WCFS1
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
aad lp_0769 D-alanyl-D-alanine dipeptidase chromosome CDS702349 558 - 0.503584
alr lp_0523 alanine racemase chromosome CDS468266 1128 + 0.499113
bar lp_3187 phosphinothricin N-acetyltransferase chromosome CDS2840458 498 - 0.419679
bsh1 lp_3536 choloylglycine hydrolase chromosome CDS3154513 975 - 0.334359
bsh2 lp_0067 choloylglycine hydrolase chromosome CDS64823 1017 - 0.470993
bsh3 lp_3362 choloylglycine hydrolase chromosome CDS2987555 987 - 0.47619
bsh4 lp_2572 choloylglycine hydrolase chromosome CDS2290119 954 + 0.523061
cfa1 lp_1696 cyclopropane-fatty-acyl-phospholipid synthase chromosome CDS1543481 1173 + 0.382779
cfa2 lp_3174 cyclopropane-fatty-acyl-phospholipid synthase chromosome CDS2832356 1194 + 0.444724
choS lp_0367 glycine betaine/carnitine/choline ABC transporter, substrate binding and permease protein chromosome CDS334512 1527 + 0.449902
cps1B lp_1178 polysaccharide biosynthesis protein chromosome CDS1075304 1062 + 0.359699
cps1F lp_1182 exopolysaccharide biosynthesis protein chromosome CDS1079618 624 + 0.358974
cps1G lp_1183 glycosyltransferase chromosome CDS1080249 1131 + 0.358974
cps1H lp_1184 glycosyltransferase (rhamnosyltransferase) chromosome CDS1081380 927 + 0.343042
cps2A lp_1197 exopolysaccharide biosynthesis protein chromosome CDS1090911 771 + 0.428016
cps2C lp_1199 exopolysaccharide biosynthesis protein chromosome CDS1092408 774 + 0.439276
cps2E lp_1201 priming glycosyltransferase chromosome CDS1094127 678 + 0.41003
cps2F lp_1202 glycosyltransferase chromosome CDS1094805 1095 + 0.349772
cps2J lp_1206 glycosyltransferase chromosome CDS1099787 1026 + 0.314815
cps4A lp_2108 exopolysaccharide biosynthesis protein chromosome CDS1902308 759 - 0.450593
cps4C lp_2106 exopolysaccharide biosynthesis protein chromosome CDS1900823 780 - 0.507692
cps4E lp_2104 priming glycosyltransferase chromosome CDS1899214 672 - 0.486607
cps4F lp_2103 glycosyltransferase chromosome CDS1898123 1092 - 0.453297
cps4G lp_2102 glycosyltransferase chromosome CDS1897079 1035 - 0.447343
cps4I lp_2100 glycosyltransferase chromosome CDS1894855 969 - 0.455108
ctpA lp_1864 carboxy-terminal processing proteinase chromosome CDS1684428 1479 - 0.457742
dacA1 lp_3189 serine-type D-Ala-D-Ala carboxypeptidase chromosome CDS2841541 1335 - 0.464419
dacA2 lp_1278 serine-type D-Ala-D-Ala carboxypeptidase chromosome CDS1163084 1239 + 0.489104
dacB lp_1010 serine-type D-Ala-D-Ala carboxypeptidase chromosome CDS931038 774 + 0.462532
dapA1 lp_2123 dihydrodipicolinate synthase chromosome CDS1917039 873 - 0.460481
dapA2 lp_2685 dihydrodipicolinate synthase chromosome CDS2384769 870 + 0.5
ddl lp_2345 D-alanine--D-alanine ligase chromosome CDS2120498 1113 - 0.418688
dgk lp_1968 diacylglycerol kinase chromosome CDS1782589 417 - 0.46283
dltB lp_2018 D-alanyl transfer protein DltB chromosome CDS1819409 1215 - 0.432099
dltD lp_2016 D-alanyl transfer protein DltD chromosome CDS1817869 1278 - 0.440532
ftsQ lp_2195 cell division initiation protein FtsQ chromosome CDS1981870 885 - 0.479096
galE1 lp_0709 UDP-glucose 4-epimerase chromosome CDS650610 996 + 0.465863
galE2 lp_1200 UDP-glucose 4-epimerase chromosome CDS1093199 948 + 0.409283
galE3 lp_2105 UDP-glucose 4-epimerase chromosome CDS1899866 942 - 0.452229
galE4 lp_3481 UDP-glucose 4-epimerase chromosome CDS3089259 1005 - 0.485572
galU lp_0757 UTP--glucose-1-phosphate uridylyltransferase chromosome CDS691787 921 + 0.424539
gidB lp_3201 cell division protein GidB chromosome CDS2853015 735 - 0.480272
glf1 lp_1176 UDP-galactopyranose mutase chromosome CDS1073182 1122 + 0.381462
glf2 lp_1219 UDP-galactopyranose mutase chromosome CDS1108611 1134 + 0.467372
glmS1 lp_0822 glutamine-fructose-6-phosphate transaminase (isomerizing) chromosome CDS761633 1818 + 0.444444
glmU lp_0467 UDP-N-acetylglucosamine pyrophosphorylase chromosome CDS418119 1383 + 0.472162
ica1 lp_1524 glycosyltransferase chromosome CDS1394444 1305 - 0.464368
ica2 lp_2142 glycosyltransferase (putative) chromosome CDS1934326 1356 - 0.434366
ica3 lp_2716 glycosyltransferase (putative) chromosome CDS2416287 1329 + 0.457487
lepA1 lp_2015 GTP-binding translation elongation factor LepA chromosome CDS1815870 1836 - 0.480392
lepA2 lp_3120 GTP-binding translation elongation factor LepA chromosome CDS2784795 1788 + 0.488255
lgt lp_0755 prolipoprotein diacylglyceryl transferase chromosome CDS689861 849 + 0.473498
licD lp_0844 lipopolysaccharide biosynthesis protein LicD chromosome CDS783587 810 - 0.435802
lp_0161 lp_0161 ABC transporter, permease protein chromosome CDS137853 1617 + 0.496599
lp_0197 lp_0197 cell surface protein precursor chromosome CDS178865 3021 + 0.491559
lp_0302 lp_0302 extracellular protein chromosome CDS278235 804 - 0.446517
lp_0304 lp_0304 extracellular protein chromosome CDS280089 639 - 0.442879
lp_0485 lp_0485 unknown chromosome CDS432979 630 + 0.369841
lp_0486 lp_0486 unknown chromosome CDS433608 1320 + 0.386364
lp_0675 lp_0675 prophage Lp1 protein 52, endolysin chromosome CDS621869 1875 + 0.405333
lp_0681 lp_0681 prophage Lp1 protein 58, lysin chromosome CDS626590 1149 + 0.464752
lp_1173 lp_1173 UDP-N-acetylglucosamine 2-epimerase chromosome CDS1069688 1119 + 0.512064
lp_1187 lp_1187 unknown chromosome CDS1084375 1290 + 0.36124
lp_1233 lp_1233 priming glycosyltransferase chromosome CDS1122465 678 - 0.443953
lp_1242 lp_1242 extracellular protein, gamma-D-glutamate-meso-diaminopimelate muropeptidase (putative) chromosome CDS1128468 732 - 0.468579
lp_1275 lp_1275 glycosyltransferase chromosome CDS1159684 1179 + 0.454623
lp_1276 lp_1276 glycosyltransferase chromosome CDS1160939 960 + 0.442708
lp_1283 lp_1283 alkaline phosphatase superfamily protein chromosome CDS1166254 2106 + 0.437322
lp_1342 lp_1342 unknown chromosome CDS1234035 642 + 0.389408
lp_1426 lp_1426 unknown chromosome CDS1307401 561 + 0.497326
lp_1430 lp_1430 glycosyltransferase chromosome CDS1309333 996 + 0.431727
lp_1457 lp_1457 unknown chromosome CDS1333566 786 + 0.451654
lp_1763 lp_1763 glycosyltransferase chromosome CDS1598760 1233 + 0.453366
lp_1767 lp_1767 lysin chromosome CDS1601959 1344 + 0.456101
lp_1805 lp_1805 unknown chromosome CDS1633405 333 + 0.447447
lp_1824 lp_1824 glycosyltransferase (putative) chromosome CDS1650581 1308 + 0.465596
lp_1884 lp_1884 unknown chromosome CDS1701697 633 - 0.466035
lp_1908 lp_1908 integral membrane protein chromosome CDS1725556 1206 + 0.456882
lp_1930 lp_1930 oxidoreductase (putative) chromosome CDS1749279 633 - 0.481833
lp_1936 lp_1936 oxidoreductase (putative) chromosome CDS1755564 642 - 0.498442
lp_1994 lp_1994 unknown chromosome CDS1804216 291 + 0.453608
lp_2049 lp_2049 zinc-dependent protease, membrane associated (putative) chromosome CDS1852587 1278 - 0.471049
lp_2071 lp_2071 glycosyltransferase chromosome CDS1868305 942 + 0.423567
lp_2162 lp_2162 extracellular protein, gamma-D-glutamate-meso-diaminopimelate muropeptidase (putative) chromosome CDS1953247 1491 - 0.479544
lp_2262 lp_2262 mechanosensitive transport protein chromosome CDS2043435 894 + 0.448546
lp_2336 lp_2336 unknown chromosome CDS2111072 2256 - 0.50266
lp_2401 lp_2401 prophage Lp2 protein 56, lysin chromosome CDS2164601 1155 - 0.472727
lp_2405 lp_2405 prophage Lp2 protein 52 chromosome CDS2167331 2196 - 0.39071
lp_2418 lp_2418 prophage Lp2 protein 39 chromosome CDS2180071 648 - 0.410494
lp_2457 lp_2457 prophage Lp3 protein 24 chromosome CDS2204171 207 - 0.396135
lp_2520 lp_2520 extracellular protein, gamma-D-glutamate-meso-diaminopimelate muropeptidase (putative) chromosome CDS2248780 894 - 0.503356
lp_2578 lp_2578 cell surface protein precursor chromosome CDS2295267 2118 - 0.5
lp_2580 lp_2580 alkaline phosphatase superfamily protein chromosome CDS2298515 2013 + 0.426726
lp_2588 lp_2588 cell surface protein precursor chromosome CDS2305971 1713 + 0.504962
lp_2658 lp_2658 glycosyltransferase (putative) chromosome CDS2361321 1209 - 0.505376
lp_2690 lp_2690 unknown chromosome CDS2388043 651 - 0.460829
lp_2713 lp_2713 unknown chromosome CDS2413726 951 - 0.465825
lp_2783 lp_2783 glycosyltransferase chromosome CDS2473889 735 + 0.47483
lp_2810 lp_2810 lysin chromosome CDS2507247 1299 - 0.515781
lp_2845 lp_2845 extracellular protein chromosome CDS2536542 945 + 0.500529
lp_2847 lp_2847 extracellular protein chromosome CDS2537954 1065 + 0.511737
lp_2872 lp_2872 oxidoreductase (putative) chromosome CDS2557663 597 - 0.41206
lp_2975 lp_2975 extracellular protein chromosome CDS2648505 1509 - 0.465209
lp_3012 lp_3012 oxidoreductase (putative) chromosome CDS2680128 1020 - 0.507843
lp_3014 lp_3014 extracellular protein chromosome CDS2682080 615 + 0.442276
lp_3015 lp_3015 extracellular protein chromosome CDS2683135 663 + 0.496229
lp_3029 lp_3029 oxidoreductase (putative) chromosome CDS2694738 639 + 0.43975
lp_3034 lp_3034 oxidoreductase (putative) chromosome CDS2697475 657 + 0.449011
lp_3091 lp_3091 unknown chromosome CDS2750380 915 + 0.462295
lp_3093 lp_3093 muramidase (putative) chromosome CDS2753017 2583 - 0.467286
lp_3098 lp_3098 oxidoreductase (putative) chromosome CDS2758531 1038 + 0.496146
lp_3108 lp_3108 oxidoreductase (putative) chromosome CDS2768573 894 - 0.461969
lp_3158 lp_3158 oxidoreductase (putative) chromosome CDS2821065 603 - 0.422886
lp_3236 lp_3236 unknown chromosome CDS2883616 852 + 0.473005
lp_3239 lp_3239 oxidoreductase chromosome CDS2886021 864 - 0.462963
lp_3324 lp_3324 glycine betaine/carnitine/choline transport protein chromosome CDS2958087 1668 - 0.450839
lp_3343 lp_3343 unknown chromosome CDS2976125 861 - 0.4518
lp_3355 lp_3355 oxidoreductase (putative) chromosome CDS2982971 639 + 0.461659
lp_3421 lp_3421 extracellular protein, gamma-D-glutamate-meso-diaminopimelate muropeptidase (putative) chromosome CDS3037010 1113 - 0.440252
lrgB lp_3255 effector of murein hydrolase (putative) chromosome CDS2897817 729 - 0.471879
lspA lp_1780 signal peptidase II chromosome CDS1612454 450 + 0.404444
lys lp_1158 lysozyme (putative) chromosome CDS1057234 777 + 0.486486
lytH lp_1982 N-acetylmuramoyl-L-alanine amidase chromosome CDS1795178 849 + 0.459364
mraW lp_2202 cell division protein MraW chromosome CDS1989087 960 - 0.480208
mraY lp_2199 phospho-N-acetylmuramoyl-pentapeptide-transferase chromosome CDS1985538 966 - 0.450311
mreC lp_2318 cell shape determining protein MreC chromosome CDS2093166 846 - 0.438534
mreD lp_2317 cell shape determining protein MreD chromosome CDS2092635 519 - 0.402698
mscL lp_1330 large conductance mechanosensitive channel chromosome CDS1224800 381 - 0.370079
murA1 lp_0510 UDP-N-acetylglucosamine1-carboxyvinyltransferase chromosome CDS455853 1281 + 0.466823
murA2 lp_2361 UDP-N-acetylglucosamine1-carboxyvinyltransferase chromosome CDS2131986 1317 - 0.466211
murB lp_0814 UDP-N-acetylmuramate dehydrogenase chromosome CDS753244 909 + 0.462046
murC lp_2380 UDP-N-acetylmuramyl tripeptide synthase (putative) chromosome CDS2149544 1347 + 0.468448
murC lp_1462 UDP-N-acetylmuramate--alanine ligase chromosome CDS1339444 1311 + 0.443173
murD lp_2197 UDP-N-acetylmuramoylalanine--D-glutamateligase chromosome CDS1983867 1380 - 0.464493
murE1 lp_0977 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diami nopimelate ligase chromosome CDS906531 1653 - 0.501512
murF lp_0518 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diamino pimelate--D-alanyl-D-alanine ligase chromosome CDS463650 1389 + 0.483801
murG lp_2196 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentape ptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase chromosome CDS1982776 1092 - 0.477106
murI lp_2268 glutamate racemase chromosome CDS2048192 822 - 0.490268
nanA lp_3568 N-acetylneuraminate lyase chromosome CDS3187588 879 + 0.403868
nsr lp_1420 nisin resistance protein (putative) chromosome CDS1301810 972 - 0.486626
opuC lp_1609 glycine betaine/carnitine/choline ABC transporter, substrate binding protein chromosome CDS1463260 936 + 0.402778
orf30 hypothetical proteinSubName: Full=Uncharacterized protein; pWCFS103 CDS21536 1155 - 0.475325
pbp1A lp_1751 penicillin binding protein 1A chromosome CDS1589403 2304 - 0.456163
pbp2A lp_1413 penicillin binding protein 2A chromosome CDS1292852 2130 + 0.446009
pbp2B1 lp_1568 penicillin binding protein 2B chromosome CDS1434552 2037 + 0.461463
pbp2B2 lp_2200 penicillin binding protein 2B chromosome CDS1986532 2142 - 0.472456
plnH lp_0424 bacteriocin ABC transporter, accessory factor PlnH chromosome CDS378602 1377 + 0.41467
plnO lp_0411 plantaricin biosynthesis protein PlnO chromosome CDS368514 1200 + 0.323333
racD lp_1523 aspartate racemase chromosome CDS1393473 747 + 0.460509
rfbA lp_1186 glucose-1-phosphate thymidylyltransferase chromosome CDS1083489 864 + 0.375
rfbB lp_1189 dTDP-glucose 4,6-dehydratase chromosome CDS1086316 1029 + 0.423712
rfbC lp_1188 dTDP-4-dehydrorhamnose 3,5-epimerase chromosome CDS1085724 549 + 0.418944
rfbD lp_1190 dTDP-4-dehydrorhamnose reductase chromosome CDS1087414 843 + 0.428232
srtA lp_0514 sortase chromosome CDS460295 705 + 0.44539
tagA lp_0564 teichoic acid biosynthesis protein A chromosome CDS519681 738 - 0.51084
tagB1 lp_1818 teichoic acid biosynthesis protein chromosome CDS1644245 1122 + 0.43672
tagB2 lp_1819 teichoic acid biosynthesis protein chromosome CDS1645367 1899 + 0.415482
tagB3 lp_1977 teichoic acid biosynthesis protein chromosome CDS1788447 1161 - 0.49354
tagD1 lp_0267 glycerol-3-phosphate cytidylyltransferase chromosome CDS243093 405 + 0.392593
tagD2 lp_1248 glycerol-3-phosphate cytidylyltransferase chromosome CDS1132563 399 + 0.448622
tagE1 lp_1299 poly(glycerol-phosphate)alpha-glucosyltransferas e chromosome CDS1187430 1497 + 0.448898
tagE2 lp_1311 poly(glycerol-phosphate)alpha-glucosyltransferas e chromosome CDS1205071 1509 + 0.437376
tagE3 lp_1312 poly(glycerol-phosphate)alpha-glucosyltransferas e chromosome CDS1206590 1527 + 0.443353
tagE4 lp_2498 poly(glycerol-phosphate)alpha-glucosyltransferas e chromosome CDS2228975 1578 - 0.443599
tagE5 lp_2843 poly(glycerol-phosphate)alpha-glucosyltransferas e chromosome CDS2533184 1509 - 0.46057
tagE6 lp_2844 poly(glycerol-phosphate)alpha-glucosyltransferas e chromosome CDS2534689 1545 - 0.453722
tagF1 lp_0268 teichoic acid biosynthesis protein chromosome CDS243522 1209 + 0.411084
tagF2 lp_0269 teichoic acid biosynthesis protein chromosome CDS244771 2832 + 0.369703
tagG lp_0343 teichoic acid ABC transporter, permease protein chromosome CDS313438 816 + 0.416667
tagH lp_0344 teichoic acid ABC transporter, ATP-binding protein chromosome CDS314266 1092 + 0.413919
tagO lp_0730 undecaprenyl-phosphate N-acetyl-glucosaminyl transferase chromosome CDS669270 1098 + 0.431694
wapA lp_2958 cell surface protein precursor chromosome CDS2632228 1854 - 0.44822