Gene list
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COG category: Cell wall/membrane biogenesis
Organism: Lactobacillus plantarum WCFS1, WCFS1
Number of genes found: 172
Show UniProt / TrEMBL protein name | View in Fasta format (DNA) | View in Fasta format (Protein) | ||||
Lactobacillus plantarum WCFS1, WCFS1 | ||||||||
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Name | Locus tag | Product / Description | Genomic element | Type | Begin | Length | Strand | GC-content |
aad | lp_0769 | D-alanyl-D-alanine dipeptidase | chromosome | CDS | 702349 | 558 | - | 0.503584 |
alr | lp_0523 | alanine racemase | chromosome | CDS | 468266 | 1128 | + | 0.499113 |
bar | lp_3187 | phosphinothricin N-acetyltransferase | chromosome | CDS | 2840458 | 498 | - | 0.419679 |
bsh1 | lp_3536 | choloylglycine hydrolase | chromosome | CDS | 3154513 | 975 | - | 0.334359 |
bsh2 | lp_0067 | choloylglycine hydrolase | chromosome | CDS | 64823 | 1017 | - | 0.470993 |
bsh3 | lp_3362 | choloylglycine hydrolase | chromosome | CDS | 2987555 | 987 | - | 0.47619 |
bsh4 | lp_2572 | choloylglycine hydrolase | chromosome | CDS | 2290119 | 954 | + | 0.523061 |
cfa1 | lp_1696 | cyclopropane-fatty-acyl-phospholipid synthase | chromosome | CDS | 1543481 | 1173 | + | 0.382779 |
cfa2 | lp_3174 | cyclopropane-fatty-acyl-phospholipid synthase | chromosome | CDS | 2832356 | 1194 | + | 0.444724 |
choS | lp_0367 | glycine betaine/carnitine/choline ABC transporter, substrate binding and permease protein | chromosome | CDS | 334512 | 1527 | + | 0.449902 |
cps1B | lp_1178 | polysaccharide biosynthesis protein | chromosome | CDS | 1075304 | 1062 | + | 0.359699 |
cps1F | lp_1182 | exopolysaccharide biosynthesis protein | chromosome | CDS | 1079618 | 624 | + | 0.358974 |
cps1G | lp_1183 | glycosyltransferase | chromosome | CDS | 1080249 | 1131 | + | 0.358974 |
cps1H | lp_1184 | glycosyltransferase (rhamnosyltransferase) | chromosome | CDS | 1081380 | 927 | + | 0.343042 |
cps2A | lp_1197 | exopolysaccharide biosynthesis protein | chromosome | CDS | 1090911 | 771 | + | 0.428016 |
cps2C | lp_1199 | exopolysaccharide biosynthesis protein | chromosome | CDS | 1092408 | 774 | + | 0.439276 |
cps2E | lp_1201 | priming glycosyltransferase | chromosome | CDS | 1094127 | 678 | + | 0.41003 |
cps2F | lp_1202 | glycosyltransferase | chromosome | CDS | 1094805 | 1095 | + | 0.349772 |
cps2J | lp_1206 | glycosyltransferase | chromosome | CDS | 1099787 | 1026 | + | 0.314815 |
cps4A | lp_2108 | exopolysaccharide biosynthesis protein | chromosome | CDS | 1902308 | 759 | - | 0.450593 |
cps4C | lp_2106 | exopolysaccharide biosynthesis protein | chromosome | CDS | 1900823 | 780 | - | 0.507692 |
cps4E | lp_2104 | priming glycosyltransferase | chromosome | CDS | 1899214 | 672 | - | 0.486607 |
cps4F | lp_2103 | glycosyltransferase | chromosome | CDS | 1898123 | 1092 | - | 0.453297 |
cps4G | lp_2102 | glycosyltransferase | chromosome | CDS | 1897079 | 1035 | - | 0.447343 |
cps4I | lp_2100 | glycosyltransferase | chromosome | CDS | 1894855 | 969 | - | 0.455108 |
ctpA | lp_1864 | carboxy-terminal processing proteinase | chromosome | CDS | 1684428 | 1479 | - | 0.457742 |
dacA1 | lp_3189 | serine-type D-Ala-D-Ala carboxypeptidase | chromosome | CDS | 2841541 | 1335 | - | 0.464419 |
dacA2 | lp_1278 | serine-type D-Ala-D-Ala carboxypeptidase | chromosome | CDS | 1163084 | 1239 | + | 0.489104 |
dacB | lp_1010 | serine-type D-Ala-D-Ala carboxypeptidase | chromosome | CDS | 931038 | 774 | + | 0.462532 |
dapA1 | lp_2123 | dihydrodipicolinate synthase | chromosome | CDS | 1917039 | 873 | - | 0.460481 |
dapA2 | lp_2685 | dihydrodipicolinate synthase | chromosome | CDS | 2384769 | 870 | + | 0.5 |
ddl | lp_2345 | D-alanine--D-alanine ligase | chromosome | CDS | 2120498 | 1113 | - | 0.418688 |
dgk | lp_1968 | diacylglycerol kinase | chromosome | CDS | 1782589 | 417 | - | 0.46283 |
dltB | lp_2018 | D-alanyl transfer protein DltB | chromosome | CDS | 1819409 | 1215 | - | 0.432099 |
dltD | lp_2016 | D-alanyl transfer protein DltD | chromosome | CDS | 1817869 | 1278 | - | 0.440532 |
ftsQ | lp_2195 | cell division initiation protein FtsQ | chromosome | CDS | 1981870 | 885 | - | 0.479096 |
galE1 | lp_0709 | UDP-glucose 4-epimerase | chromosome | CDS | 650610 | 996 | + | 0.465863 |
galE2 | lp_1200 | UDP-glucose 4-epimerase | chromosome | CDS | 1093199 | 948 | + | 0.409283 |
galE3 | lp_2105 | UDP-glucose 4-epimerase | chromosome | CDS | 1899866 | 942 | - | 0.452229 |
galE4 | lp_3481 | UDP-glucose 4-epimerase | chromosome | CDS | 3089259 | 1005 | - | 0.485572 |
galU | lp_0757 | UTP--glucose-1-phosphate uridylyltransferase | chromosome | CDS | 691787 | 921 | + | 0.424539 |
gidB | lp_3201 | cell division protein GidB | chromosome | CDS | 2853015 | 735 | - | 0.480272 |
glf1 | lp_1176 | UDP-galactopyranose mutase | chromosome | CDS | 1073182 | 1122 | + | 0.381462 |
glf2 | lp_1219 | UDP-galactopyranose mutase | chromosome | CDS | 1108611 | 1134 | + | 0.467372 |
glmS1 | lp_0822 | glutamine-fructose-6-phosphate transaminase (isomerizing) | chromosome | CDS | 761633 | 1818 | + | 0.444444 |
glmU | lp_0467 | UDP-N-acetylglucosamine pyrophosphorylase | chromosome | CDS | 418119 | 1383 | + | 0.472162 |
ica1 | lp_1524 | glycosyltransferase | chromosome | CDS | 1394444 | 1305 | - | 0.464368 |
ica2 | lp_2142 | glycosyltransferase (putative) | chromosome | CDS | 1934326 | 1356 | - | 0.434366 |
ica3 | lp_2716 | glycosyltransferase (putative) | chromosome | CDS | 2416287 | 1329 | + | 0.457487 |
lepA1 | lp_2015 | GTP-binding translation elongation factor LepA | chromosome | CDS | 1815870 | 1836 | - | 0.480392 |
lepA2 | lp_3120 | GTP-binding translation elongation factor LepA | chromosome | CDS | 2784795 | 1788 | + | 0.488255 |
lgt | lp_0755 | prolipoprotein diacylglyceryl transferase | chromosome | CDS | 689861 | 849 | + | 0.473498 |
licD | lp_0844 | lipopolysaccharide biosynthesis protein LicD | chromosome | CDS | 783587 | 810 | - | 0.435802 |
lp_0161 | lp_0161 | ABC transporter, permease protein | chromosome | CDS | 137853 | 1617 | + | 0.496599 |
lp_0197 | lp_0197 | cell surface protein precursor | chromosome | CDS | 178865 | 3021 | + | 0.491559 |
lp_0302 | lp_0302 | extracellular protein | chromosome | CDS | 278235 | 804 | - | 0.446517 |
lp_0304 | lp_0304 | extracellular protein | chromosome | CDS | 280089 | 639 | - | 0.442879 |
lp_0485 | lp_0485 | unknown | chromosome | CDS | 432979 | 630 | + | 0.369841 |
lp_0486 | lp_0486 | unknown | chromosome | CDS | 433608 | 1320 | + | 0.386364 |
lp_0675 | lp_0675 | prophage Lp1 protein 52, endolysin | chromosome | CDS | 621869 | 1875 | + | 0.405333 |
lp_0681 | lp_0681 | prophage Lp1 protein 58, lysin | chromosome | CDS | 626590 | 1149 | + | 0.464752 |
lp_1173 | lp_1173 | UDP-N-acetylglucosamine 2-epimerase | chromosome | CDS | 1069688 | 1119 | + | 0.512064 |
lp_1187 | lp_1187 | unknown | chromosome | CDS | 1084375 | 1290 | + | 0.36124 |
lp_1233 | lp_1233 | priming glycosyltransferase | chromosome | CDS | 1122465 | 678 | - | 0.443953 |
lp_1242 | lp_1242 | extracellular protein, gamma-D-glutamate-meso-diaminopimelate muropeptidase (putative) | chromosome | CDS | 1128468 | 732 | - | 0.468579 |
lp_1275 | lp_1275 | glycosyltransferase | chromosome | CDS | 1159684 | 1179 | + | 0.454623 |
lp_1276 | lp_1276 | glycosyltransferase | chromosome | CDS | 1160939 | 960 | + | 0.442708 |
lp_1283 | lp_1283 | alkaline phosphatase superfamily protein | chromosome | CDS | 1166254 | 2106 | + | 0.437322 |
lp_1342 | lp_1342 | unknown | chromosome | CDS | 1234035 | 642 | + | 0.389408 |
lp_1426 | lp_1426 | unknown | chromosome | CDS | 1307401 | 561 | + | 0.497326 |
lp_1430 | lp_1430 | glycosyltransferase | chromosome | CDS | 1309333 | 996 | + | 0.431727 |
lp_1457 | lp_1457 | unknown | chromosome | CDS | 1333566 | 786 | + | 0.451654 |
lp_1763 | lp_1763 | glycosyltransferase | chromosome | CDS | 1598760 | 1233 | + | 0.453366 |
lp_1767 | lp_1767 | lysin | chromosome | CDS | 1601959 | 1344 | + | 0.456101 |
lp_1805 | lp_1805 | unknown | chromosome | CDS | 1633405 | 333 | + | 0.447447 |
lp_1824 | lp_1824 | glycosyltransferase (putative) | chromosome | CDS | 1650581 | 1308 | + | 0.465596 |
lp_1884 | lp_1884 | unknown | chromosome | CDS | 1701697 | 633 | - | 0.466035 |
lp_1908 | lp_1908 | integral membrane protein | chromosome | CDS | 1725556 | 1206 | + | 0.456882 |
lp_1930 | lp_1930 | oxidoreductase (putative) | chromosome | CDS | 1749279 | 633 | - | 0.481833 |
lp_1936 | lp_1936 | oxidoreductase (putative) | chromosome | CDS | 1755564 | 642 | - | 0.498442 |
lp_1994 | lp_1994 | unknown | chromosome | CDS | 1804216 | 291 | + | 0.453608 |
lp_2049 | lp_2049 | zinc-dependent protease, membrane associated (putative) | chromosome | CDS | 1852587 | 1278 | - | 0.471049 |
lp_2071 | lp_2071 | glycosyltransferase | chromosome | CDS | 1868305 | 942 | + | 0.423567 |
lp_2162 | lp_2162 | extracellular protein, gamma-D-glutamate-meso-diaminopimelate muropeptidase (putative) | chromosome | CDS | 1953247 | 1491 | - | 0.479544 |
lp_2262 | lp_2262 | mechanosensitive transport protein | chromosome | CDS | 2043435 | 894 | + | 0.448546 |
lp_2336 | lp_2336 | unknown | chromosome | CDS | 2111072 | 2256 | - | 0.50266 |
lp_2401 | lp_2401 | prophage Lp2 protein 56, lysin | chromosome | CDS | 2164601 | 1155 | - | 0.472727 |
lp_2405 | lp_2405 | prophage Lp2 protein 52 | chromosome | CDS | 2167331 | 2196 | - | 0.39071 |
lp_2418 | lp_2418 | prophage Lp2 protein 39 | chromosome | CDS | 2180071 | 648 | - | 0.410494 |
lp_2457 | lp_2457 | prophage Lp3 protein 24 | chromosome | CDS | 2204171 | 207 | - | 0.396135 |
lp_2520 | lp_2520 | extracellular protein, gamma-D-glutamate-meso-diaminopimelate muropeptidase (putative) | chromosome | CDS | 2248780 | 894 | - | 0.503356 |
lp_2578 | lp_2578 | cell surface protein precursor | chromosome | CDS | 2295267 | 2118 | - | 0.5 |
lp_2580 | lp_2580 | alkaline phosphatase superfamily protein | chromosome | CDS | 2298515 | 2013 | + | 0.426726 |
lp_2588 | lp_2588 | cell surface protein precursor | chromosome | CDS | 2305971 | 1713 | + | 0.504962 |
lp_2658 | lp_2658 | glycosyltransferase (putative) | chromosome | CDS | 2361321 | 1209 | - | 0.505376 |
lp_2690 | lp_2690 | unknown | chromosome | CDS | 2388043 | 651 | - | 0.460829 |
lp_2713 | lp_2713 | unknown | chromosome | CDS | 2413726 | 951 | - | 0.465825 |
lp_2783 | lp_2783 | glycosyltransferase | chromosome | CDS | 2473889 | 735 | + | 0.47483 |
lp_2810 | lp_2810 | lysin | chromosome | CDS | 2507247 | 1299 | - | 0.515781 |
lp_2845 | lp_2845 | extracellular protein | chromosome | CDS | 2536542 | 945 | + | 0.500529 |
lp_2847 | lp_2847 | extracellular protein | chromosome | CDS | 2537954 | 1065 | + | 0.511737 |
lp_2872 | lp_2872 | oxidoreductase (putative) | chromosome | CDS | 2557663 | 597 | - | 0.41206 |
lp_2975 | lp_2975 | extracellular protein | chromosome | CDS | 2648505 | 1509 | - | 0.465209 |
lp_3012 | lp_3012 | oxidoreductase (putative) | chromosome | CDS | 2680128 | 1020 | - | 0.507843 |
lp_3014 | lp_3014 | extracellular protein | chromosome | CDS | 2682080 | 615 | + | 0.442276 |
lp_3015 | lp_3015 | extracellular protein | chromosome | CDS | 2683135 | 663 | + | 0.496229 |
lp_3029 | lp_3029 | oxidoreductase (putative) | chromosome | CDS | 2694738 | 639 | + | 0.43975 |
lp_3034 | lp_3034 | oxidoreductase (putative) | chromosome | CDS | 2697475 | 657 | + | 0.449011 |
lp_3091 | lp_3091 | unknown | chromosome | CDS | 2750380 | 915 | + | 0.462295 |
lp_3093 | lp_3093 | muramidase (putative) | chromosome | CDS | 2753017 | 2583 | - | 0.467286 |
lp_3098 | lp_3098 | oxidoreductase (putative) | chromosome | CDS | 2758531 | 1038 | + | 0.496146 |
lp_3108 | lp_3108 | oxidoreductase (putative) | chromosome | CDS | 2768573 | 894 | - | 0.461969 |
lp_3158 | lp_3158 | oxidoreductase (putative) | chromosome | CDS | 2821065 | 603 | - | 0.422886 |
lp_3236 | lp_3236 | unknown | chromosome | CDS | 2883616 | 852 | + | 0.473005 |
lp_3239 | lp_3239 | oxidoreductase | chromosome | CDS | 2886021 | 864 | - | 0.462963 |
lp_3324 | lp_3324 | glycine betaine/carnitine/choline transport protein | chromosome | CDS | 2958087 | 1668 | - | 0.450839 |
lp_3343 | lp_3343 | unknown | chromosome | CDS | 2976125 | 861 | - | 0.4518 |
lp_3355 | lp_3355 | oxidoreductase (putative) | chromosome | CDS | 2982971 | 639 | + | 0.461659 |
lp_3421 | lp_3421 | extracellular protein, gamma-D-glutamate-meso-diaminopimelate muropeptidase (putative) | chromosome | CDS | 3037010 | 1113 | - | 0.440252 |
lrgB | lp_3255 | effector of murein hydrolase (putative) | chromosome | CDS | 2897817 | 729 | - | 0.471879 |
lspA | lp_1780 | signal peptidase II | chromosome | CDS | 1612454 | 450 | + | 0.404444 |
lys | lp_1158 | lysozyme (putative) | chromosome | CDS | 1057234 | 777 | + | 0.486486 |
lytH | lp_1982 | N-acetylmuramoyl-L-alanine amidase | chromosome | CDS | 1795178 | 849 | + | 0.459364 |
mraW | lp_2202 | cell division protein MraW | chromosome | CDS | 1989087 | 960 | - | 0.480208 |
mraY | lp_2199 | phospho-N-acetylmuramoyl-pentapeptide-transferase | chromosome | CDS | 1985538 | 966 | - | 0.450311 |
mreC | lp_2318 | cell shape determining protein MreC | chromosome | CDS | 2093166 | 846 | - | 0.438534 |
mreD | lp_2317 | cell shape determining protein MreD | chromosome | CDS | 2092635 | 519 | - | 0.402698 |
mscL | lp_1330 | large conductance mechanosensitive channel | chromosome | CDS | 1224800 | 381 | - | 0.370079 |
murA1 | lp_0510 | UDP-N-acetylglucosamine1-carboxyvinyltransferase | chromosome | CDS | 455853 | 1281 | + | 0.466823 |
murA2 | lp_2361 | UDP-N-acetylglucosamine1-carboxyvinyltransferase | chromosome | CDS | 2131986 | 1317 | - | 0.466211 |
murB | lp_0814 | UDP-N-acetylmuramate dehydrogenase | chromosome | CDS | 753244 | 909 | + | 0.462046 |
murC | lp_2380 | UDP-N-acetylmuramyl tripeptide synthase (putative) | chromosome | CDS | 2149544 | 1347 | + | 0.468448 |
murC | lp_1462 | UDP-N-acetylmuramate--alanine ligase | chromosome | CDS | 1339444 | 1311 | + | 0.443173 |
murD | lp_2197 | UDP-N-acetylmuramoylalanine--D-glutamateligase | chromosome | CDS | 1983867 | 1380 | - | 0.464493 |
murE1 | lp_0977 | UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diami nopimelate ligase | chromosome | CDS | 906531 | 1653 | - | 0.501512 |
murF | lp_0518 | UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diamino pimelate--D-alanyl-D-alanine ligase | chromosome | CDS | 463650 | 1389 | + | 0.483801 |
murG | lp_2196 | UDP-N-acetylglucosamine--N-acetylmuramyl- (pentape ptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase | chromosome | CDS | 1982776 | 1092 | - | 0.477106 |
murI | lp_2268 | glutamate racemase | chromosome | CDS | 2048192 | 822 | - | 0.490268 |
nanA | lp_3568 | N-acetylneuraminate lyase | chromosome | CDS | 3187588 | 879 | + | 0.403868 |
nsr | lp_1420 | nisin resistance protein (putative) | chromosome | CDS | 1301810 | 972 | - | 0.486626 |
opuC | lp_1609 | glycine betaine/carnitine/choline ABC transporter, substrate binding protein | chromosome | CDS | 1463260 | 936 | + | 0.402778 |
orf30 | hypothetical protein | pWCFS103 | CDS | 21536 | 1155 | - | 0.475325 | |
pbp1A | lp_1751 | penicillin binding protein 1A | chromosome | CDS | 1589403 | 2304 | - | 0.456163 |
pbp2A | lp_1413 | penicillin binding protein 2A | chromosome | CDS | 1292852 | 2130 | + | 0.446009 |
pbp2B1 | lp_1568 | penicillin binding protein 2B | chromosome | CDS | 1434552 | 2037 | + | 0.461463 |
pbp2B2 | lp_2200 | penicillin binding protein 2B | chromosome | CDS | 1986532 | 2142 | - | 0.472456 |
plnH | lp_0424 | bacteriocin ABC transporter, accessory factor PlnH | chromosome | CDS | 378602 | 1377 | + | 0.41467 |
plnO | lp_0411 | plantaricin biosynthesis protein PlnO | chromosome | CDS | 368514 | 1200 | + | 0.323333 |
racD | lp_1523 | aspartate racemase | chromosome | CDS | 1393473 | 747 | + | 0.460509 |
rfbA | lp_1186 | glucose-1-phosphate thymidylyltransferase | chromosome | CDS | 1083489 | 864 | + | 0.375 |
rfbB | lp_1189 | dTDP-glucose 4,6-dehydratase | chromosome | CDS | 1086316 | 1029 | + | 0.423712 |
rfbC | lp_1188 | dTDP-4-dehydrorhamnose 3,5-epimerase | chromosome | CDS | 1085724 | 549 | + | 0.418944 |
rfbD | lp_1190 | dTDP-4-dehydrorhamnose reductase | chromosome | CDS | 1087414 | 843 | + | 0.428232 |
srtA | lp_0514 | sortase | chromosome | CDS | 460295 | 705 | + | 0.44539 |
tagA | lp_0564 | teichoic acid biosynthesis protein A | chromosome | CDS | 519681 | 738 | - | 0.51084 |
tagB1 | lp_1818 | teichoic acid biosynthesis protein | chromosome | CDS | 1644245 | 1122 | + | 0.43672 |
tagB2 | lp_1819 | teichoic acid biosynthesis protein | chromosome | CDS | 1645367 | 1899 | + | 0.415482 |
tagB3 | lp_1977 | teichoic acid biosynthesis protein | chromosome | CDS | 1788447 | 1161 | - | 0.49354 |
tagD1 | lp_0267 | glycerol-3-phosphate cytidylyltransferase | chromosome | CDS | 243093 | 405 | + | 0.392593 |
tagD2 | lp_1248 | glycerol-3-phosphate cytidylyltransferase | chromosome | CDS | 1132563 | 399 | + | 0.448622 |
tagE1 | lp_1299 | poly(glycerol-phosphate)alpha-glucosyltransferas e | chromosome | CDS | 1187430 | 1497 | + | 0.448898 |
tagE2 | lp_1311 | poly(glycerol-phosphate)alpha-glucosyltransferas e | chromosome | CDS | 1205071 | 1509 | + | 0.437376 |
tagE3 | lp_1312 | poly(glycerol-phosphate)alpha-glucosyltransferas e | chromosome | CDS | 1206590 | 1527 | + | 0.443353 |
tagE4 | lp_2498 | poly(glycerol-phosphate)alpha-glucosyltransferas e | chromosome | CDS | 2228975 | 1578 | - | 0.443599 |
tagE5 | lp_2843 | poly(glycerol-phosphate)alpha-glucosyltransferas e | chromosome | CDS | 2533184 | 1509 | - | 0.46057 |
tagE6 | lp_2844 | poly(glycerol-phosphate)alpha-glucosyltransferas e | chromosome | CDS | 2534689 | 1545 | - | 0.453722 |
tagF1 | lp_0268 | teichoic acid biosynthesis protein | chromosome | CDS | 243522 | 1209 | + | 0.411084 |
tagF2 | lp_0269 | teichoic acid biosynthesis protein | chromosome | CDS | 244771 | 2832 | + | 0.369703 |
tagG | lp_0343 | teichoic acid ABC transporter, permease protein | chromosome | CDS | 313438 | 816 | + | 0.416667 |
tagH | lp_0344 | teichoic acid ABC transporter, ATP-binding protein | chromosome | CDS | 314266 | 1092 | + | 0.413919 |
tagO | lp_0730 | undecaprenyl-phosphate N-acetyl-glucosaminyl transferase | chromosome | CDS | 669270 | 1098 | + | 0.431694 |
wapA | lp_2958 | cell surface protein precursor | chromosome | CDS | 2632228 | 1854 | - | 0.44822 |