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2024-05-06 05:29:35

Gene list

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COG category: Cell wall/membrane biogenesis
Organism: Salmonella enterica subsp. enterica serovar Typhi str. CT18, CT18

Number of genes found: 243

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Salmonella enterica subsp. enterica serovar Typhi str. CT18, CT18
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
HCM1.259 hypothetical proteinpHCM1 CDS190873 516 + 0.476744
HCM1.286c putative DNA-binding proteinpHCM1 CDS215505 1206 - 0.545605
HCM2.0054c putative phage proteinpHCM2 CDS45280 798 - 0.546366
STY0056 lipoprotein signal peptidasechromosome CDS56686 501 + 0.516966
STY0058 LytB proteinchromosome CDS57793 951 + 0.567823
STY0084 probable carnitine transporterchromosome CDS86503 1518 - 0.537549
STY0108 organic solvent tolerance protein precursorchromosome CDS105614 2355 - 0.529087
STY0140 conserved hypothetical proteinchromosome CDS141821 942 + 0.562633
STY0142 penicillin-binding protein 3 precursorchromosome CDS143140 1767 + 0.547821
STY0143 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopim ligasechromosome CDS144893 1488 + 0.588038
STY0144 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diami nopimelate--D-alan alanyl ligasechromosome CDS146377 1359 + 0.565121
STY0145 phospho-N-acetylmuramoyl-pentapeptide-transferasechromosome CDS147729 1083 + 0.539243
STY0146 UDP-N-acetylmuramoyl-L-alanine:D-glutamateligasechromosome CDS148814 1317 + 0.583144
STY0148 UDP-N-acetylglucosamine:N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferasechromosome CDS151371 1068 + 0.61236
STY0149 UDP-N-acetylmuramate:alanine ligasechromosome CDS152557 1476 + 0.565041
STY0150 D-alanine:D-alanine ligase Bchromosome CDS154025 921 + 0.54506
STY0151 cell division protein FtsQchromosome CDS154947 831 + 0.527076
STY0154 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylasechromosome CDS158349 918 + 0.508715
STY0215 penicillin-binding protein 1b; peptidoglycan synthetasechromosome CDS225332 2523 + 0.564407
STY0251 acyl-[acyl-carrier-protein]:UDP-N- acetylglucosamine O-acyltransferasechromosome CDS263877 789 + 0.531052
STY0252 lipid-A-disaccharide synthasechromosome CDS264665 1149 + 0.559617
STY0266 copper homeostasis protein CutF precursor (lipoprotein nlpE)chromosome CDS279279 702 + 0.551282
STY0321 Rhs-family proteinchromosome CDS331314 4065 + 0.598278
STY0324 Rhs-family proteinchromosome CDS336466 2532 + 0.625987
STY0351 possible outer membrane adhesinchromosome CDS359306 720 - 0.429167
STY0365 outer membrane pore protein E precursorchromosome CDS374283 1053 - 0.470085
STY0412 D-alanine:D-alanine ligase Achromosome CDS425056 1095 - 0.522374
STY0451 nucleoside-specific channel-forming protein tsx precursorchromosome CDS459745 864 - 0.511574
STY0487 putative lipoproteinchromosome CDS492267 579 - 0.521589
STY0520 acriflavin resistance protein A precursorchromosome CDS525281 1194 - 0.553601
STY0522 integral membrane protein AefAchromosome CDS527388 3363 + 0.524234
STY0556 outer membrane proteinchromosome CDS562946 1134 + 0.498236
STY0618 putative membrane proteinchromosome CDS617263 1248 - 0.492788
STY0688 D-alanine carboxypeptidasechromosome CDS683163 1212 - 0.520627
STY0689 rare lipoprotein A precursorchromosome CDS684513 1134 - 0.606702
STY0698 rare lipoprotein B precursorchromosome CDS693269 591 - 0.554992
STY0711 apolipoprotein N-acyltransferasechromosome CDS706916 1539 - 0.550357
STY0759 UDP-galactopyranose mutasechromosome CDS759249 1095 + 0.385388
STY0761 galactosyltransferasechromosome CDS761332 1134 + 0.36067
STY0764 putative polysaccharide export ABC transporter ATP-binding proteinchromosome CDS763368 711 + 0.390999
STY0767 conserved hypothetical proteinchromosome CDS766138 834 + 0.317746
STY0793 tolA proteinchromosome CDS789404 1131 + 0.580902
STY0795 peptidoglycan-associated lipoprotein precursorchromosome CDS791985 525 + 0.539048
STY0809 UDP-glucose 4-epimerasechromosome CDS805177 1017 - 0.552606
STY0853 HlyD-family secretion proteinchromosome CDS847486 996 - 0.574297
STY0865 putative membrane proteinchromosome CDS856198 2223 - 0.546559
STY0896 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6 precursor)chromosome CDS889909 1203 + 0.53616
STY0928 putative oxidoreductasechromosome CDS918214 1014 - 0.548323
STY0929 conserved hypothetical proteinchromosome CDS919323 1434 - 0.582287
STY0959 outer membrane lipoprotein carrier protein precursorchromosome CDS952082 615 + 0.502439
STY0990 3-deoxy-manno-octulosonate cytidylyltransferasechromosome CDS985175 747 + 0.570281
STY1002 outer membrane protein F precursorchromosome CDS1000298 1092 - 0.510989
STY1091 outer membrane protein Achromosome CDS1070003 1053 - 0.54416
STY1176 assembly/transport component in curli productionchromosome CDS1138300 834 - 0.48801
STY1188 periplasmic glucans biosynthesis protein MdoHchromosome CDS1148222 2544 + 0.564072
STY1192 lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) (heat shock protein)chromosome CDS1152892 921 - 0.548317
STY1221 flagellar protein FlgJchromosome CDS1174728 951 + 0.564669
STY1248 conserved hypothetical proteinchromosome CDS1201437 825 + 0.570909
STY1257 ABC transporter integral membrane subunitchromosome CDS1212056 1311 + 0.546148
STY1259 ABC transporter integral membrane subunitchromosome CDS1214060 1245 + 0.535743
STY1298 glucose-1-phosphate uridylyltransferasechromosome CDS1256963 909 + 0.49725
STY1314 TonB proteinchromosome CDS1273721 729 + 0.576132
STY1319 putative outer membrane proteinchromosome CDS1277177 639 + 0.533646
STY1382 putative mandelate racemase / muconate lactonizing enzyme family proteinchromosome CDS1335036 966 + 0.574534
STY1401 putative membrane proteinchromosome CDS1352710 1032 - 0.445736
STY1454 putative transferasechromosome CDS1404648 981 - 0.509684
STY1475 putative acetyltransferasechromosome CDS1426703 516 - 0.550388
STY1522 putative secreted hydrolasechromosome CDS1478591 1092 - 0.477106
STY1556 starvation sensing protein RspAchromosome CDS1508770 1215 - 0.534156
STY1571 putative ABC transporter periplasmic binding proteinchromosome CDS1521003 903 + 0.51938
STY1609 hypothetical proteinchromosome CDS1547849 420 + 0.585714
STY1610 hypothetical proteinchromosome CDS1548347 231 + 0.601732
STY1649 outer membrane proteinchromosome CDS1576317 1152 + 0.478299
STY1677 outer membrane lipoprotein SlyB precursorchromosome CDS1605896 468 + 0.540598
STY1690 putative secreted proteinchromosome CDS1615756 855 + 0.512281
STY1695 cyclopropane-fatty-acyl-phospholipid synthasechromosome CDS1621347 1149 + 0.488251
STY1745 major outer membrane lipoproteinchromosome CDS1666834 237 + 0.514768
STY1784 putative outer membrane proteinchromosome CDS1705619 759 - 0.503294
STY1830 putative outer membrane proteinchromosome CDS1748312 747 - 0.514056
STY1860 putative membrane proteinchromosome CDS1768842 1134 + 0.486772
STY1897 2-dehydro-3-deoxyphosphooctonate aldolasechromosome CDS1792009 855 - 0.549708
STY1904 outer membrane lipoproteinchromosome CDS1797626 624 + 0.557692
STY1926 conserved hypothetical proteinchromosome CDS1818871 735 + 0.52517
STY1930 alanine racemasechromosome CDS1823207 1071 - 0.577965
STY1949 putative lipoproteinchromosome CDS1838713 582 - 0.560137
STY1976 tail-specific protease precursorchromosome CDS1862732 2049 - 0.517814
STY2097 lipid A acyltransferasechromosome CDS1949632 972 - 0.52572
STY2098 conserved hypothetical proteinchromosome CDS1950720 1320 - 0.544697
STY2149 putative exported proteinchromosome CDS1997355 1434 - 0.48954
STY2279 conserved hypothetical proteinchromosome CDS2105221 825 - 0.568485
STY2304 dTDP-4-dehydrorhamnose 3,5-epimerasechromosome CDS2133107 552 - 0.400362
STY2305 TDP-glucose pyrophosphorylasechromosome CDS2133659 879 - 0.444824
STY2306 dTDP-4-dehydrorhamnose reductasechromosome CDS2134585 900 - 0.503333
STY2307 dTDP-glucose 4,6-dehydratasechromosome CDS2135484 1086 - 0.438306
STY2308 UTP-glucose-1-phosphate uridylyltransferasechromosome CDS2136946 894 - 0.516779
STY2310 putative glycosyltransferasechromosome CDS2139431 1221 - 0.565111
STY2315 putative extracellular polysaccharide biosynthesis proteinchromosome CDS2143528 1395 - 0.535484
STY2318 putative glycosyltransferasechromosome CDS2147896 1224 - 0.576797
STY2320 GDP-fucose synthetasechromosome CDS2149592 966 - 0.600414
STY2321 GDP-mannose 4,6-dehydratasechromosome CDS2150560 1122 - 0.559715
STY2333 putative outer membrane assembly proteinchromosome CDS2162954 1857 - 0.556274
STY2339 putative efflux system proteinchromosome CDS2172247 1242 + 0.577295
STY2395 putative periplasmic proteinchromosome CDS2225657 918 - 0.54902
STY2402 putative lipoproteinchromosome CDS2234412 1437 - 0.580376
STY2412 puatative membrane proteinchromosome CDS2243900 696 + 0.561782
STY2444 putative membrane proteinchromosome CDS2275328 666 - 0.387387
STY2450 putative lipoproteinchromosome CDS2280045 573 + 0.495637
STY2500 putative MR-MLE-family proteinchromosome CDS2334419 1203 - 0.43059
STY2521 putative MR-MLE-family proteinchromosome CDS2355811 1218 - 0.535304
STY2527 putative lipopolysaccharide biosynthesis proteinchromosome CDS2361544 1158 + 0.563903
STY2615 penicillin-insensitive murein endopeptidase precursorchromosome CDS2448733 825 - 0.586667
STY2624 VacJ lipoprotein precursorchromosome CDS2458732 756 - 0.53836
STY2632 outer membrane protease E; protease VII precursorchromosome CDS2465992 939 - 0.464324
STY2639 putative acyltransferasechromosome CDS2474460 921 + 0.541802
STY2659 conserved hypothetical proteinchromosome CDS2496555 762 + 0.455381
STY2687 probable N-acetylmuramoyl-L-alanine amidasechromosome CDS2520548 870 + 0.504598
STY2726 putative lipoproteinchromosome CDS2563303 1035 - 0.578744
STY2727 dihydrodipicolinate synthasechromosome CDS2564354 879 - 0.538112
STY2813 putative exported proteinchromosome CDS2676484 1428 + 0.523109
STY2829 GTP-binding protein LepAchromosome CDS2690859 1800 - 0.528889
STY2876 putative type I secretion proteinchromosome CDS2754433 1410 + 0.569504
STY2878 putative type I secretion proteinchromosome CDS2758027 1164 + 0.533505
STY2952 membrane-bound lytic transglycosylase B precursorchromosome CDS2829862 1080 - 0.559259
STY3039 conserved hypothetical proteinchromosome CDS2907509 951 - 0.556257
STY3050 lipoprotein NlpD precursorchromosome CDS2916132 1122 - 0.52139
STY3128 membrane-bound lytic murein transglycosylase A precursorchromosome CDS2995296 1098 - 0.542805
STY3129 N-acetylmuramoyl-L-alanine amidasechromosome CDS2996893 1254 - 0.533493
STY3143 prolipoprotein diacylglyceryl transferasechromosome CDS3015066 876 - 0.537671
STY3159 conserved hypothetical proteinchromosome CDS3031938 708 - 0.538136
STY3179 outer membrane protein (associated with virulence)chromosome CDS3050045 537 - 0.486034
STY3189 hypothetical proteinchromosome CDS3055153 492 - 0.544715
STY3194 possible lipoproteinchromosome CDS3060097 753 - 0.539177
STY3223 putative membrane proteinchromosome CDS3090949 861 - 0.506388
STY3451 conserved hypothetical proteinchromosome CDS3294153 636 - 0.586478
STY3479 Penicillin-binding protein (D-alanyl-D-alanine carboxypeptidase)chromosome CDS3323177 1434 + 0.551604
STY3486 UDP-N-acetylglucosamine1-carboxyvinyltransferasechromosome CDS3329421 1260 - 0.579365
STY3520 N-acetylneuraminate lyasechromosome CDS3362630 894 - 0.534676
STY3552 rod shape-determining proteinchromosome CDS3395510 492 - 0.530488
STY3553 rod shape-determining proteinchromosome CDS3396001 1053 - 0.585945
STY3602 detergent-resistant phospholipase Achromosome CDS3457001 870 - 0.503448
STY3626 probable UDP-N-acetyl-D-mannosaminuronic acid transferasechromosome CDS3481759 741 - 0.557355
STY3630 lipopolysaccharide biosynthesis proteinchromosome CDS3486179 1131 - 0.541998
STY3632 glucose-1-phosphate thymidylyltransferasechromosome CDS3487969 882 - 0.552154
STY3633 UDP-N-acetylglucosamine epimerase (UDP-GlcNAc-2-epimerase)chromosome CDS3488883 1068 - 0.558989
STY3634 UDP-ManNAc dehydrogenasechromosome CDS3489950 1263 - 0.572447
STY3636 lipopolysaccharide biosynthesis proteinchromosome CDS3492395 1047 - 0.516714
STY3637 putative undecaprenyl-phosphate alpha-N-acetylglucosaminyltransferasechromosome CDS3493453 1104 - 0.464674
STY3742 UDP-N-acetylenolpyruvoylglucosamine reductasechromosome CDS3593509 1029 - 0.530612
STY3743 glutamate racemasechromosome CDS3600451 783 - 0.542784
STY3763 alanine racemasechromosome CDS3625958 1107 - 0.591689
STY3905 glucose inhibited division proteinchromosome CDS3767428 624 + 0.512821
STY3916 UDP-N-acetylglucosamine pyrophosphorylasechromosome CDS3776797 1371 + 0.52954
STY3917 glucosamine--fructose-6-phosphateaminotransferas echromosome CDS3778356 1830 + 0.546448
STY3945 possible racemasechromosome CDS3812376 1194 - 0.531826
STY3949 hypothetical proteinchromosome CDS3817167 1140 + 0.568421
STY4070 3-deoxy-D-manno-octulosonic-acid transferasechromosome CDS3927682 1278 - 0.549296
STY4088 putative glycosyltransferasechromosome CDS3946749 1035 + 0.479227
STY4099 putative racemasechromosome CDS3956485 1197 - 0.544695
STY4157 putative outer membrane proteinchromosome CDS4015808 663 - 0.59276
STY4193 putative membrane proteinchromosome CDS4056943 2061 + 0.546337
STY4202 putative phosphosugar-binding proteinchromosome CDS4069063 855 + 0.508772
STY4223 putative HlyD family secretion proteinchromosome CDS4089228 1068 + 0.607678
STY4432 diacylglycerol kinasechromosome CDS4303894 369 + 0.501355
STY4456 putative type-I secretion proteinchromosome CDS4325000 1308 + 0.365443
STY4457 putative type-I secretion proteinchromosome CDS4326304 1278 + 0.341158
STY4470 putative membrane proteinchromosome CDS4355905 690 + 0.584058
STY4559 hypothetical proteinchromosome CDS4440435 552 + 0.514493
STY4866 probable aspartate racemasechromosome CDS4728340 735 + 0.55102
alr alanine racemasechromosome CDS4313162 1080 + 0.583333
amiB N-acetylmuramoyl-L-alanine amidasechromosome CDS4576713 1320 + 0.576515
blc putative lipoproteinchromosome CDS4558327 534 - 0.522472
cld polysaccharide chain length regulatorchromosome CDS2113613 984 - 0.515244
ftsI2 penicillin-binding proteinchromosome CDS1855187 1746 - 0.524055
gtrB bactoprenol glucosyl transferasechromosome CDS608393 927 - 0.426106
iagB cell invasion proteinchromosome CDS2873545 483 + 0.407867
lppB major outer membrane lipoproteinchromosome CDS1667153 240 + 0.470833
lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferasechromosome CDS262287 1026 + 0.519493
lpxK tetraacyldisaccharide 4'-kinasechromosome CDS982691 978 + 0.604294
mdoB putative phosphoglycerol transferasechromosome CDS4756264 2292 - 0.534468
mltC membrane-bound lytic murein transglycosylase Cchromosome CDS3126548 1086 + 0.518416
mltD membrane-bound lytic murein transglycosylase d precursorchromosome CDS297748 1368 - 0.521199
mltE membrane-bound lytic murein transglycosylase Echromosome CDS1819619 612 - 0.529412
mpl murein peptide ligasechromosome CDS4635777 1374 + 0.582242
mrcA penicillin-binding protein 1Achromosome CDS4181390 2577 - 0.564222
mscL large-conductance mechanosensitive channelchromosome CDS4247800 414 - 0.458937
mtgA monofunctional biosynthetic peptidoglycan transglycosylasechromosome CDS3343409 729 - 0.558299
nlpC putative lipoproteinchromosome CDS1690203 465 - 0.486022
ompC outer membrane protein Cchromosome CDS2322394 1137 - 0.531223
ompH outer membrane protein OmpH precursorchromosome CDS261798 486 + 0.473251
ompS1 outer membrane protein S1chromosome CDS2041179 1185 + 0.505485
ompX outer membrane protein x precursor; outer membrane protein X precursorchromosome CDS863334 516 + 0.513566
pagC outer membrane invasion proteinchromosome CDS1781177 558 - 0.422939
pbpA penicillin-binding protein 2chromosome CDS686772 1902 - 0.540484
pbpC penicillin-binding protein 1Cchromosome CDS2629668 2316 - 0.610535
pcgL D-alanyl-D-alanine dipeptidasechromosome CDS1414966 771 + 0.473411
pilT putative membrane proteinchromosome CDS4432552 477 + 0.492662
pmrF putative lipopolysaccharide modification proteinchromosome CDS2362704 984 + 0.529472
pqaB melittin resistance protein PqaBchromosome CDS2366559 1647 + 0.542805
rfaD ADP-L-Glycero-D-mannoheptose-6-epimerasechromosome CDS3942888 933 - 0.50911
rfaE ADP-heptose synthasechromosome CDS3220060 1434 - 0.577406
rfbE CDP-tyvelose-2-epimerasechromosome CDS2127027 1017 - 0.351032
rfbF glucose-1-phosphate cytidylyltransferasechromosome CDS2131338 774 - 0.435401
rfbG CDP-glucose 4,6-dehydratasechromosome CDS2130254 1080 - 0.437037
rfbH putative dehydratase RfbHchromosome CDS2128914 1314 - 0.442922
rfbN putative rhamnosyltransferasechromosome CDS2122074 945 - 0.374603
rfbP undecaprenyl-phosphategalactosephosphotransferasechromosome CDS2117712 1431 - 0.37037
rfbS paratose synthasechromosome CDS2128040 840 - 0.332143
rfbU putative glycosyltransferasechromosome CDS2123019 1062 - 0.341808
rfbV putative glycosyltransferasechromosome CDS2124655 1002 - 0.326347
slt lytic murein transglycosylasechromosome CDS4790883 1884 + 0.572187
tolC outer membrane protein TolC precursorchromosome CDS3206069 1476 + 0.522358
trhN plasmid transfer proteinpHCM1 CDS73921 3177 + 0.43091
tviB Vi polysaccharide biosynthesis protein, UDP-glucose/GDP-mannose dehydrogenasechromosome CDS4522618 1278 - 0.43975
tviC Vi polysaccharide biosynthesis protein, epimerasechromosome CDS4521569 1047 - 0.425024
tviE Vi polysaccharide biosynthesis protein TviE, Glycosyl transferases group 1chromosome CDS4516537 1737 - 0.471503
ugd UDP-glucose 6-dehydrogenasechromosome CDS2114739 1167 - 0.43359
vexA Vi polysaccharide export proteinchromosome CDS4515425 1068 - 0.48221
vexB Vi polysaccharide export inner-membrane protein (ABC-2 type transporter)chromosome CDS4514621 795 - 0.38239
vexC Vi polysaccharide export ATP-binding proteinchromosome CDS4513900 696 - 0.472701
vexD Vi polysaccharide export inner-membrane proteinchromosome CDS4512573 1305 - 0.462835
waaB lipopolysaccharide 1,6-galactosyltransferasechromosome CDS3933525 1080 + 0.398148
waaC lipopolysaccharide heptosyltransferase-1chromosome CDS3940886 954 - 0.541929
waaF ADP-heptose-LPS heptosyltransferase IIchromosome CDS3941839 1047 - 0.581662
waaG lipopolysaccharide core biosynthesis proteinchromosome CDS3930435 1125 + 0.480889
waaI lipopolysaccharide 1,3-galactosyltransferasechromosome CDS3934610 1014 + 0.37574
waaJ lipopolysaccharide 1,2-glucosyltransferasechromosome CDS3935641 1011 + 0.347181
waaK lipopolysaccharide1,2-N-acetylglucosaminetransfe rasechromosome CDS3938430 1146 + 0.415358
waaQ lipopolysaccharide core biosynthesis proteinchromosome CDS3929404 1035 + 0.477295
wcaC putative glycosyltransferasechromosome CDS2154222 1218 - 0.552545
wcaE putative glycosyltransferasechromosome CDS2152275 747 - 0.491299
wecB UDP-N-acetyl-D-glucosamine 2-epimerasechromosome CDS3491209 1131 - 0.520778
wza putative polysaccharide export proteinchromosome CDS2159475 1140 - 0.539474
wzc putative tyrosine-protein kinasechromosome CDS2156864 2160 - 0.539352
yaeL putative membrane proteinchromosome CDS257880 1353 + 0.529933
yaeT outer membrane protein precursorchromosome CDS259264 2412 + 0.526119
ybjY putative exported proteinchromosome CDS930310 1119 + 0.531725
ygcX probable glucarate dehydratase 1chromosome CDS2966078 1341 - 0.552573
ygcY probable glucarate dehydratase 2chromosome CDS2967439 1341 - 0.567487
yhjO putative polysaccharide biosynthesis protein catalytic subunitchromosome CDS4039950 2625 + 0.555429
yjeP putative membrane proteinchromosome CDS4565815 3327 - 0.566276
ytfB conserved hypothetical proteinchromosome CDS4608620 636 - 0.575472
ytfG conserved hypothetical proteinchromosome CDS4616552 849 - 0.573616
ytfM putative exported proteinchromosome CDS4625159 1734 + 0.532872