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2024-05-17 14:24:58

Gene list

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COG category: Cell wall/membrane biogenesis
Organism: Helicobacter pylori 26695, 26695

Number of genes found: 101

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Helicobacter pylori 26695, 26695
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
HP0003 3-deoxy-d-manno-octulosonic acid 8-phosphate synthetase (kdsA)RecName: Full=2-dehydro-3-deoxyphosphooctonate aldolase; EC=2.5.1.55; AltName: Full=3-deoxy-D-manno-octulosonic acid 8-phosphate synthase; AltName: Full=KDO-8-phosphate synthase; Short=KDO 8-P synthase; Short=KDOPS; AltName: Full=Phospho-2-dehydro-3-deoxyoctonate aldolase; chromosome CDS1115 831 - 0.4284
HP0043 mannose-6-phosphate isomerase (pmi) or (algA)SubName: Full=Mannose-6-phosphate isomerase; SubName: Full=Mannose-6-phosphate isomerase (Pmi) or (AlgA); chromosome CDS40651 1413 + 0.391366
HP0044 GDP-D-mannose dehydratase (rfbD)RecName: Full=GDP-mannose 4,6-dehydratase; EC=4.2.1.47; AltName: Full=GDP-D-mannose dehydratase; chromosome CDS42105 1146 + 0.407504
HP0045 nodulation protein (nolK)RecName: Full=GDP-L-fucose synthase; EC=1.1.1.271; AltName: Full=GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase-4-reductase; chromosome CDS43243 933 + 0.414791
HP0074 lipoprotein signal peptidase (lspA)RecName: Full=Lipoprotein signal peptidase; EC=3.4.23.36; AltName: Full=Prolipoprotein signal peptidase; AltName: Full=Signal peptidase II; Short=SPase II; chromosome CDS78302 474 - 0.369198
HP0087 H. pylori predicted coding region HP0087SubName: Full=Uncharacterized protein; chromosome CDS91558 1374 - 0.395924
HP0102 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS108215 780 - 0.383333
HP0159 lipopolysaccharide 1,2-glucosyltransferase (rfaJ)SubName: Full=Lipopolysaccharide 1,2-glucosyltransferase (RfaJ); SubName: Full=Lipopolysaccharide 1,2-glucosyltransferase RfaJ; chromosome CDS167613 1119 - 0.369973
HP0178 spore coat polysaccharide biosynthesis protein ERecName: Full=Pseudaminic acid synthase; EC=2.5.1.97; AltName: Full=Pseudaminic acid biosynthesis protein I; chromosome CDS184798 1023 - 0.395894
HP0180 apolipoprotein N-acyltransferase (cute)RecName: Full=Apolipoprotein N-acyltransferase; Short=ALP N-acyltransferase; EC=2.3.1.-; chromosome CDS186462 1278 - 0.368545
HP0196 UDP-3-0-(3-hydroxymyristoyl) glucosamine N-acyltransferase (lpxD)RecName: Full=UDP-3-O-acylglucosamine N-acyltransferase; EC=2.3.1.-; chromosome CDS202543 1011 + 0.416419
HP0230 CTP:CMP-3-deoxy-D-manno-octulosonate-cytidylyl- transferase (kdsB)RecName: Full=3-deoxy-manno-octulosonate cytidylyltransferase; EC=2.7.7.38; AltName: Full=CMP-2-keto-3-deoxyoctulosonic acid synthase; Short=CKS; Short=CMP-KDO synthase; chromosome CDS240354 732 - 0.398907
HP0258 conserved hypothetical integral membrane proteinRecName: Full=Putative zinc metalloprotease HP_0258; EC=3.4.24.-; chromosome CDS267021 1047 + 0.406877
HP0279 lipopolysaccharide heptosyltransferase-1 (rfaC)SubName: Full=Lipopolysaccharide heptosyltransferase-1; SubName: Full=Lipopolysaccharide heptosyltransferase-1 (RfaC); chromosome CDS286747 1023 + 0.377322
HP0280 heat shock protein B (ibpB)SubName: Full=Heat shock protein B (IbpB); SubName: Full=Lipid A biosynthesis lauroyl acyltransferase; chromosome CDS287766 987 + 0.391084
HP0284 conserved hypothetical integral membrane proteinSubName: Full=Conserved hypothetical integral membrane protein; SubName: Full=Uncharacterized protein; chromosome CDS292487 1572 + 0.37341
HP0326 CMP-N-acetylneuraminic acid synthetase (neuA)RecName: Full=Pseudaminic acid cytidylyltransferase and UDP-2,4-diacetamido-2,4,6-trideoxy-beta-L-altropyranose hydrolase; Includes: RecName: Full=Pseudaminic acid cytidylyltransferase; EC=2.7.7.81; AltName: Full=Pseudaminic acid biosynthesis protein F; Short=PseF; AltName: Full=Pseudaminic acid cytidylyltransferase HP_0326A; Includes: RecName: Full=UDP-2,4-diacetamido-2,4,6-trideoxy-beta-L-altropyranose hydrolase; EC=3.6.1.57; AltName: Full=Pseudaminic acid biosynthesis protein G; Short=PseG; AltName: Full=UDP-2,4-diacetamido-2,4,6-trideoxy-beta-L-altropyranose hydrolase HP_0326B; chromosome CDS341563 1554 + 0.368082
HP0328 conserved hypothetical proteinRecName: Full=Tetraacyldisaccharide 4-kinase; EC=2.7.1.130; AltName: Full=Lipid A 4-kinase; chromosome CDS343588 939 - 0.374867
HP0355 GTP-binding membrane protein (lepA)RecName: Full=Elongation factor 4; Short=EF-4; EC=3.6.5.n1; AltName: Full=Ribosomal back-translocase LepA; chromosome CDS364403 1809 + 0.419016
HP0360 UDP-glucose 4-epimeraseSubName: Full=UDP-glucose 4-epimerase; chromosome CDS370160 1035 + 0.4
HP0366 spore coat polysaccharide biosynthesis protein CRecName: Full=UDP-4-amino-4,6-dideoxy-N-acetyl-beta-L-altrosamine transaminase; EC=2.6.1.92; AltName: Full=Pseudaminic acid biosynthesis protein C; chromosome CDS374950 1128 - 0.390957
HP0400 penicillin tolerance protein (lytB)RecName: Full=4-hydroxy-3-methylbut-2-enyl diphosphate reductase; EC=1.17.1.2; chromosome CDS411222 825 - 0.387879
HP0415 conserved hypothetical integral membrane proteinRecName: Full=Uncharacterized MscS family protein HP_0415; chromosome CDS427687 1872 + 0.378205
HP0416 cyclopropane fatty acid synthase (cfa)SubName: Full=Cyclopropane fatty acid synthase (Cfa); SubName: Full=Cyclopropane-fatty-acyl-phospholipid synthase; chromosome CDS429561 1170 - 0.416239
HP0421 type 1 capsular polysaccharide biosynthesis protein J (capJ)SubName: Full=Type 1 capsular polysaccharide biosynthesis protein J (CapJ); chromosome CDS435098 1170 + 0.378632
HP0467 conserved hypothetical integral membrane proteinSubName: Full=Conserved hypothetical integral membrane protein; chromosome CDS488687 348 - 0.385057
HP0479 H. pylori predicted coding region HP0479SubName: Full=Uncharacterized protein; chromosome CDS501734 849 + 0.327444
HP0493 phospho-N-acetylmuramoyl-pentapeptide-transferas e(mraY)RecName: Full=Phospho-N-acetylmuramoyl-pentapeptide-transferase; EC=2.7.8.13; AltName: Full=UDP-MurNAc-pentapeptide phosphotransferase; chromosome CDS519534 1062 + 0.402072
HP0494 UDP-N-acetylmuramoylalanine-D-glutamate ligase (murD)RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; EC=6.3.2.9; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; chromosome CDS520597 1269 + 0.364066
HP0499 phospholipase A1 precursor (DR-phospholipase A)SubName: Full=Phospholipase A1 (DR-phospholipase A); chromosome CDS525424 1068 + 0.400749
HP0506 conserved hypothetical secreted proteinSubName: Full=Conserved hypothetical secreted protein; SubName: Full=Uncharacterized protein; chromosome CDS531991 1212 + 0.40099
HP0549 glutamate racemase (glr)RecName: Full=Glutamate racemase; EC=5.1.1.3; chromosome CDS584583 768 - 0.415365
HP0578 H. pylori predicted coding region HP0578SubName: Full=Uncharacterized protein; chromosome CDS608300 2037 - 0.370152
HP0582 H. pylori predicted coding region HP0582SubName: Full=Uncharacterized protein; chromosome CDS613020 975 - 0.4
HP0597 penicillin-binding protein 1A (PBP-1A)SubName: Full=Penicillin-binding protein 1A (PBP-1A); chromosome CDS630840 1980 - 0.410606
HP0605 H. pylori predicted coding region HP0605SubName: Full=Uncharacterized protein; chromosome CDS641299 1434 + 0.400976
HP0606 membrane fusion protein (mtrC)SubName: Full=Membrane fusion protein (MtrC); chromosome CDS642743 705 + 0.404255
HP0623 UDP-N-acetylmuramate-alanine ligase (murC)RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; EC=6.3.2.8; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase; chromosome CDS669021 1350 - 0.378519
HP0645 soluble lytic murein transglycosylase (slt)SubName: Full=Lytic murein transglycosylase; SubName: Full=Soluble lytic murein transglycosylase (Slt); chromosome CDS690364 1683 + 0.377302
HP0646 UDP-glucose pyrophosphorylase (galU)SubName: Full=UDP-glucose pyrophosphorylase (GalU); SubName: Full=UTP-glucose-1-phosphate uridylyltransferase; chromosome CDS692043 822 + 0.422141
HP0648 UDP-N-acetylglucosamine enolpyruvyl transferase (murZ)RecName: Full=UDP-N-acetylglucosamine 1-carboxyvinyltransferase; EC=2.5.1.7; AltName: Full=Enoylpyruvate transferase; AltName: Full=UDP-N-acetylglucosamine enolpyruvyl transferase; Short=EPT; chromosome CDS693286 1269 + 0.447597
HP0655 protective surface antigen D15RecName: Full=Outer membrane protein assembly factor BamA; Flags: Precursor; chromosome CDS700735 2751 + 0.426027
HP0683 UDP-N-acetylglucosamine pyrophosphorylase (glmU)RecName: Full=Bifunctional protein GlmU; Includes: RecName: Full=UDP-N-acetylglucosamine pyrophosphorylase; EC=2.7.7.23; AltName: Full=N-acetylglucosamine-1-phosphate uridyltransferase; Includes: RecName: Full=Glucosamine-1-phosphate N-acetyltransferase; EC=2.3.1.157; chromosome CDS732667 1302 - 0.417819
HP0700 diacylglycerol kinase (dgkA)RecName: Full=Diacylglycerol kinase; Short=DAGK; EC=2.7.1.107; AltName: Full=Diglyceride kinase; Short=DGK; chromosome CDS752106 387 + 0.408269
HP0707 conserved hypothetical proteinRecName: Full=Ribosomal RNA small subunit methyltransferase H; EC=2.1.1.199; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH; chromosome CDS761272 927 + 0.389428
HP0738 D-alanine:D-alanine ligase A (ddlA)RecName: Full=D-alanine--D-alanine ligase; EC=6.3.2.4; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase; chromosome CDS792978 1044 + 0.355364
HP0740 UDP-MurNac-pentapeptide presynthetase (murF)SubName: Full=UDP-MurNac-pentapeptide presynthetase (MurF); chromosome CDS794733 1482 + 0.387314
HP0772 N-acetylmuramoyl-L-alanine amidase (amiA)SubName: Full=N-acetylmuramoyl-L-alanine amidase; SubName: Full=N-acetylmuramoyl-L-alanine amidase (AmiA); chromosome CDS824033 1323 - 0.391534
HP0785 conserved hypothetical secreted proteinRecName: Full=Outer-membrane lipoprotein carrier protein; Flags: Precursor; chromosome CDS838878 555 - 0.336937
HP0787 conserved hypothetical integral membrane proteinSubName: Full=Conserved hypothetical integral membrane protein; SubName: Full=Uncharacterized protein; chromosome CDS842167 1233 + 0.397405
HP0805 lipooligosaccharide 5G8 epitope biosynthesis-associated protein (lex2B)SubName: Full=Lipooligosaccharide 5G8 epitope biosynthesis-associated protein (Lex2B); chromosome CDS859421 855 - 0.376608
HP0818 osmoprotection protein (proWX)SubName: Full=Osmoprotection protein (ProWX); chromosome CDS870442 1662 + 0.397714
HP0826 lipooligosaccharide 5G8 epitope biosynthesis-associated protein (lex2B)SubName: Full=Lipooligosaccharide 5G8 epitope biosynthesis-associated protein (Lex2B); chromosome CDS878363 822 + 0.386861
HP0840 flaA1 proteinRecName: Full=UDP-N-acetylglucosamine 4,6-dehydratase (inverting); EC=4.2.1.115; AltName: Full=Pseudaminic acid biosynthesis protein B; AltName: Full=UDP-GlcNAc-inverting 4,6-dehydratase; chromosome CDS891482 1002 + 0.426148
HP0855 alginate O-acetylation protein (algI)RecName: Full=Peptidoglycan O-acetyltransferase; Short=PG acetyltransferase; EC=2.3.1.-; chromosome CDS907648 1584 + 0.345328
HP0858 ADP-heptose synthase (rfaE)RecName: Full=Bifunctional protein HldE; Includes: RecName: Full=D-beta-D-heptose 7-phosphate kinase; EC=2.7.1.167; AltName: Full=D-beta-D-heptose 7-phosphotransferase; AltName: Full=D-glycero-beta-D-manno-heptose-7-phosphate kinase; Includes: RecName: Full=D-beta-D-heptose 1-phosphate adenylyltransferase; EC=2.7.7.70; AltName: Full=D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase; chromosome CDS910909 1386 - 0.414863
HP0859 ADP-L-glycero-D-mannoheptose-6-epimerase (rfaD)SubName: Full=ADP-L-glycero-D-manno-heptose-6-epimerase; SubName: Full=ADP-L-glycero-D-mannoheptose-6-epimerase (RfaD); chromosome CDS912291 993 - 0.390735
HP0867 lipid A disaccharide synthetase (lpxB)RecName: Full=Lipid-A-disaccharide synthase; EC=2.4.1.182; chromosome CDS918458 1083 - 0.386888
HP0941 alanine racemase, biosynthetic (alr)RecName: Full=Alanine racemase; EC=5.1.1.1; chromosome CDS1001142 1134 - 0.401235
HP0955 prolipoprotein diacylglyceryl transferase (lgt)RecName: Full=Prolipoprotein diacylglyceryl transferase; EC=2.4.99.-; chromosome CDS1014182 855 - 0.391813
HP0957 3-deoxy-d-manno-octulosonic-acid transferase (kdtA)SubName: Full=3-deoxy-D-manno-octulosonic-acid transferase; SubName: Full=3-deoxy-d-manno-octulosonic-acid transferase (KdtA); chromosome CDS1015786 1182 - 0.384095
HP0970 nickel-cobalt-cadmium resistance protein (nccB)SubName: Full=Nickel-cobalt-cadmium resistance protein (NccB); chromosome CDS1030161 1080 - 0.400926
HP0971 H. pylori predicted coding region HP0971SubName: Full=Uncharacterized protein; chromosome CDS1031237 1242 - 0.388084
HP0980 conserved hypothetical secreted proteinSubName: Full=Conserved hypothetical secreted protein; SubName: Full=Uncharacterized protein; chromosome CDS1044552 303 + 0.382838
HP0983 conserved hypothetical integral membrane proteinSubName: Full=Conserved hypothetical integral membrane protein; SubName: Full=Uncharacterized protein; chromosome CDS1047054 825 + 0.380606
HP1013 dihydrodipicolinate synthetase (dapA)RecName: Full=4-hydroxy-tetrahydrodipicolinate synthase; Short=HTPA synthase; EC=4.3.3.7; chromosome CDS1076894 903 + 0.429679
HP1039 H. pylori predicted coding region HP1039SubName: Full=Uncharacterized protein; chromosome CDS1099194 1290 - 0.365116
HP1052 UDP-3-0-acyl N-acetylglcosamine deacetylase (envA)RecName: Full=UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; EC=3.5.1.-; AltName: Full=UDP-3-O-acyl-GlcNAc deacetylase; chromosome CDS1114449 888 - 0.417793
HP1054 H. pylori predicted coding region HP1054SubName: Full=Uncharacterized protein; chromosome CDS1115923 1269 - 0.365642
HP1063 glucose-inhibited division protein (gidB)RecName: Full=Ribosomal RNA small subunit methyltransferase G; EC=2.1.1.170; AltName: Full=16S rRNA 7-methylguanosine methyltransferase; Short=16S rRNA m7G methyltransferase; chromosome CDS1124072 537 + 0.353817
HP1105 LPS biosynthesis proteinSubName: Full=LPS biosynthesis protein; chromosome CDS1166386 1296 - 0.398148
HP1125 peptidoglycan associated lipoprotein precursor (omp18)SubName: Full=Peptidoglycan associated lipoprotein (Omp18); SubName: Full=Peptidoglycan-associated lipoprotein; chromosome CDS1190157 540 - 0.396296
HP1155 transferase, peptidoglycan synthesis (murG)RecName: Full=UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; EC=2.4.1.227; AltName: Full=Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase; chromosome CDS1218057 1062 + 0.410546
HP1191 ADP-heptose-lps heptosyltransferase II (rfaF)SubName: Full=ADP-heptose--LPS heptosyltransferase II; SubName: Full=ADP-heptose-lps heptosyltransferase II (RfaF); chromosome CDS1262036 1050 + 0.410476
HP1215 H. pylori predicted coding region HP1215SubName: Full=Uncharacterized protein; chromosome CDS1291326 243 - 0.399177
HP1216 conserved hypothetical secreted proteinRecName: Full=LPS-assembly protein LptD; Flags: Precursor; chromosome CDS1291604 1983 - 0.374181
HP1235 conserved hypothetical integral membrane proteinSubName: Full=Conserved hypothetical integral membrane protein; SubName: Full=Uncharacterized protein; chromosome CDS1308986 1248 + 0.379808
HP1283 H. pylori predicted coding region HP1283SubName: Full=Uncharacterized protein; chromosome CDS1358992 1458 - 0.358025
HP1284 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1360547 1041 - 0.405379
HP1328 cation efflux system protein (czcA)SubName: Full=Cation efflux system protein (CzcA); chromosome CDS1387400 1017 + 0.373648
HP1341 siderophore-mediated iron transport protein (tonB)RecName: Full=Protein TonB; chromosome CDS1399888 858 + 0.423077
HP1350 proteaseSubName: Full=Protease; chromosome CDS1409757 1380 - 0.423913
HP1372 rod shape-determining protein (mreC)SubName: Full=Rod shape-determining protein (MreC); SubName: Full=Rod shape-determining protein MreC; chromosome CDS1436251 747 - 0.381526
HP1375 UDP-N-acetylglucosamine acyltransferase (lpxA)RecName: Full=Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase; Short=UDP-N-acetylglucosamine acyltransferase; EC=2.3.1.129; chromosome CDS1439429 813 - 0.423124
HP1416 lipopolysaccharide 1,2-glucosyltransferase (rfaJ)SubName: Full=Lipopolysaccharide 1,2-glucosyltransferase (RfaJ); SubName: Full=Lipopolysaccharide 1,2-glucosyltransferase RfaJ; chromosome CDS1485782 1104 + 0.386775
HP1418 UDP-N-acetylenolpyruvoylglucosamine reductase (murB)RecName: Full=UDP-N-acetylenolpyruvoylglucosamine reductase; EC=1.3.1.98; AltName: Full=UDP-N-acetylmuramate dehydrogenase; chromosome CDS1488625 780 - 0.416667
HP1429 polysialic acid capsule expression protein (kpsF)RecName: Full=Uncharacterized protein HP_1429; chromosome CDS1498437 990 - 0.422222
HP1455 H. pylori predicted coding region HP1455SubName: Full=Uncharacterized protein; chromosome CDS1525870 393 - 0.409669
HP1488 conserved hypothetical secreted proteinRecName: Full=36 kDa antigen; chromosome CDS1560538 990 - 0.434343
HP1489 lipase-like proteinSubName: Full=Lipase-like protein; chromosome CDS1561539 1533 - 0.403783
HP1494 UDP-MurNac-tripeptide synthetase (murE)RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase; EC=6.3.2.13; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; chromosome CDS1567157 1344 + 0.377232
HP1532 glucosamine fructose-6-phosphate aminotransferase (isomerizing) (glmS)RecName: Full=Glutamine--fructose-6-phosphate aminotransferase [isomerizing]; EC=2.6.1.16; AltName: Full=D-fructose-6-phosphate amidotransferase; AltName: Full=GFAT; AltName: Full=Glucosamine-6-phosphate synthase; AltName: Full=Hexosephosphate aminotransferase; AltName: Full=L-glutamine--D-fructose-6-phosphate amidotransferase; chromosome CDS1609975 1794 + 0.410814
HP1542 H. pylori predicted coding region HP1542SubName: Full=Uncharacterized protein; chromosome CDS1621612 411 - 0.435523
HP1543 toxR-activated gene (tagE)SubName: Full=ToxR-activated gene (TagE); SubName: Full=ToxR-activated protein (TagE); chromosome CDS1621941 939 - 0.408946
HP1544 toxR-activated gene (tagE)SubName: Full=ToxR-activated gene (TagE); SubName: Full=ToxR-activated protein (TagE); chromosome CDS1622888 927 - 0.399137
HP1556 cell division protein (ftsI)SubName: Full=Cell division protein (FtsI); chromosome CDS1637996 1848 - 0.394481
HP1565 penicillin-binding protein 2 (pbp2)SubName: Full=Penicillin-binding protein 2; SubName: Full=Penicillin-binding protein 2 (Pbp2); chromosome CDS1647268 1767 - 0.408036
HP1571 rare lipoprotein A (rlpA)RecName: Full=RlpA-like lipoprotein; Flags: Precursor; chromosome CDS1651704 948 - 0.425105
HP1572 regulatory protein DniRSubName: Full=Regulatory protein DniR; chromosome CDS1652651 1119 - 0.387846
HP1578 LPS biosynthesis proteinSubName: Full=LPS biosynthesis protein; chromosome CDS1657275 1119 - 0.362824
HP1581 methicillin resistance protein (llm)SubName: Full=Methicillin resistance protein (Llm); chromosome CDS1659473 1011 - 0.392681