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2024-05-17 09:33:06

Gene list

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COG category: Replication, recombination and repair
Genomic element: pCP301

Number of genes found: 124

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Shigella flexneri 2a str. 301, 301
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA CP0231 IS629 ORF1pCP301 CDS186424 330 + 0.545455
NA CP0084 iso-IS10R ORFpCP301 CDS70195 1209 + 0.451613
NA CP0098 ISSfl1 ORF2pCP301 CDS82691 390 - 0.517949
NA CP0205 ISSfl4 ORF2pCP301 CDS169358 351 - 0.549858
NA CP0086 putative protein encoded within ISpCP301 CDS71614 504 - 0.541667
NA CP0105 IS2 ORF2pCP301 CDS87010 906 - 0.554084
NA CP0268 IS911 ORF1pCP301 CDS216790 339 + 0.454277
NA CP0069 IS21 ORF2pCP301 CDS51950 627 + 0.532695
NA CP0067 IS629 ORF2pCP301 CDS50808 669 + 0.542601
NA CP0239 IS630 ORFpCP301 CDS195760 957 - 0.535005
NA CP0177 putative reverse transcriptasepCP301 CDS146245 240 - 0.520833
NA CP0210 iso-IS1 ORF1pCP301 CDS172967 273 - 0.512821
NA CP0091 iso-IS10R ORFpCP301 CDS75050 1209 - 0.450786
NA CP0040 IS629 ORF1pCP301 CDS32967 327 - 0.53211
NA CP0029 IS100 ORF2pCP301 CDS25446 783 + 0.501916
NA CP0066 IS629 ORF1pCP301 CDS50267 327 + 0.53211
NA CP0270 IS3 ORF2pCP301 CDS218767 153 + 0.490196
NA CP0085 IS100 ORF2pCP301 CDS71382 192 - 0.505208
NA CP0116 IS600 ORF1pCP301 CDS97087 303 + 0.462046
NA CP0007 IS600 ORF2pCP301 CDS5745 351 - 0.541311
NA CP0165 IS3 ORF2pCP301 CDS139297 294 - 0.581633
NA CP0173 IS629 ORF2pCP301 CDS144033 294 + 0.513605
NA CP0117 IS600 ORF2pCP301 CDS97417 735 + 0.517007
NA CP0222 putative protein encoded within ISpCP301 CDS179387 219 + 0.557078
NA CP0255 IS600 ORF1pCP301 CDS207182 303 - 0.465347
NA CP0095 ISSfl4 ORF3pCP301 CDS81806 300 - 0.53
NA CP0047 IS2 ORF2pCP301 CDS37780 288 + 0.5
NA CP0055 IS629 ORF1pCP301 CDS42940 327 + 0.544343
NA CP0075 IS630 ORFpCP301 CDS59774 1032 + 0.530039
NA CP0248 oriT nicking and unwinding proteinpCP301 CDS199216 1365 + 0.583883
NA CP0017 IS4 ORFpCP301 CDS13870 1344 - 0.542411
NA CP0208 IS2 ORF1pCP301 CDS171135 411 - 0.510949
NA CP0087 IS629 ORF2pCP301 CDS72090 792 - 0.556818
NA CP0254 IS600 ORF2pCP301 CDS206328 819 - 0.5116
NA CP0187 orf, conserved hypothetical proteinpCP301 CDS157296 327 - 0.464832
NA CP0074 ISSfl1 ORF2pCP301 CDS59270 390 + 0.517949
NA CP0269 IS911 ORF2pCP301 CDS217155 840 + 0.546429
NA CP0025 IS3 ORF2pCP301 CDS21746 585 + 0.528205
NA CP0204 ISSfl4 ORF3pCP301 CDS167760 1602 - 0.524969
NA CP0006 putative protein encoded within ISpCP301 CDS5264 402 - 0.557214
NA CP0232 IS629 ORF2pCP301 CDS186968 669 + 0.541106
NA CP0171 IS629 ORF1pCP301 CDS143116 327 + 0.535168
NA CP0013 putative IS1 ORFpCP301 CDS11015 204 + 0.45098
NA CP0172 IS629 ORF2pCP301 CDS143657 408 + 0.566176
NA CP0212 ISSfl4 ORF2pCP301 CDS174109 348 + 0.571839
NA CP0207 IS2 ORF2pCP301 CDS170327 738 - 0.544715
NA CP0011 orf, conserved hypothetical proteinpCP301 CDS10420 375 - 0.525333
NA CP0183 IS629 ORF1pCP301 CDS153587 327 + 0.544343
NA CP0193 orf, conserved hypothetical proteinpCP301 CDS160896 381 - 0.417323
NA CP0021 putative transposasepCP301 CDS18104 207 + 0.444444
NA CP0179 IS629 ORF2pCP301 CDS146846 564 - 0.562057
NA CP0118 IS150 ORF BpCP301 CDS98573 423 + 0.503546
NA CP0108 IS600 ORF1pCP301 CDS89207 303 - 0.465347
NA CP0180 IS629 ORF1pCP301 CDS147516 219 - 0.534247
NA CP0223 ISSfl4 ORF3pCP301 CDS179624 381 + 0.577428
NA CP0120 ISSfl2 ORFpCP301 CDS100321 1197 - 0.577277
NA CP0234 orf, conserved hypothetical proteinpCP301 CDS188314 2913 - 0.508411
NA CP0089 IS100 ORF2pCP301 CDS73674 663 + 0.494721
NA CP0189 IS600 ORF2pCP301 CDS158491 201 - 0.522388
NA CP0242 IS600 ORF1pCP301 CDS197582 303 - 0.458746
NA CP0099 ISSfl1 ORF1pCP301 CDS83086 540 - 0.505556
NA CP0045 IS100 ORF2pCP301 CDS36124 384 + 0.450521
NA CP0044 IS150 ORF1(ORF A)pCP301 CDS35565 522 - 0.45977
NA CP0256 orf, conserved hypothetical proteinpCP301 CDS207606 168 + 0.511905
NA CP0107 IS600 ORF2pCP301 CDS88353 819 - 0.5116
NA CP0174 putative transposasepCP301 CDS144329 231 - 0.463203
NA CP0033 putative transposasepCP301 CDS29516 360 + 0.461111
NA CP0002 putative resolvasepCP301 CDS485 465 + 0.507527
NA CP0184 IS629 ORF2pCP301 CDS154128 669 + 0.542601
NA CP0113 ISSfl4 ORF2pCP301 CDS93705 351 - 0.549858
NA CP0188 putative reverse transcriptasepCP301 CDS157675 804 - 0.549751
NA CP0159 IS600 ORF2pCP301 CDS137406 189 + 0.460317
NA CP0088 IS629 ORF1pCP301 CDS73096 327 - 0.544343
NA CP0106 IS2 ORF1pCP301 CDS87873 411 - 0.506083
NA CP0018 putative protein encoded within ISpCP301 CDS15326 336 + 0.547619
NA CP0076 iso-IS1 ORF1pCP301 CDS60987 285 + 0.494737
NA CP0056 IS629 ORF2pCP301 CDS43481 669 + 0.54858
NA CP0267 IS600 ORF1pCP301 CDS216373 384 + 0.484375
NA CP0121 IS100 ORF1pCP301 CDS101709 1005 - 0.526368
NA CP0192 ISSfl1 ORF1pCP301 CDS160401 450 - 0.528889
NA CP0062 ISSfl1 ORF2pCP301 CDS47361 231 + 0.493506
NA CP0080 IS629 ORF1pCP301 CDS66115 327 + 0.53211
NA CP0114 ISSfl4 ORF1pCP301 CDS94052 675 - 0.502222
NA CP0081 IS629 ORF2pCP301 CDS66656 714 + 0.543417
NA CP0101 ISSfl2 ORFpCP301 CDS84369 1197 + 0.577277
NA CP0112 ISSfl4 ORF3pCP301 CDS92107 1602 - 0.524345
NA CP0191 ISSfl1 ORF2pCP301 CDS160006 390 - 0.512821
NA CP0170 orf, conserved hypothetical proteinpCP301 CDS142609 375 - 0.52
NA CP0027 IS100 ORF1pCP301 CDS25018 432 + 0.525463
NA CP0001 IS2 ORF2pCP301 CDS191 303 - 0.49505
NA CP0019 ISSfl4 ORF2pCP301 CDS15661 348 + 0.563218
NA CP0026 IS100 ORF1pCP301 CDS23117 783 + 0.508301
NA CP0057 IS600 ORF2pCP301 CDS44189 189 - 0.529101
NA CP0211 ISSfl4 ORF1pCP301 CDS173438 675 + 0.503704
NA CP0008 IS600 ORF2pCP301 CDS6107 819 - 0.510379
NA CP0233 IS3 ORF2pCP301 CDS188108 219 + 0.579909
NA CP0030 iso-IS1 ORF2pCP301 CDS26244 390 + 0.520513
NA CP0166 IS3 ORF1pCP301 CDS139651 216 - 0.50463
NA CP0158 IS600 ORF1pCP301 CDS137018 303 - 0.462046
NA CP0020 ISSfl4 ORF3pCP301 CDS16028 1308 + 0.559633
NA CP0214 IS100 ORF2pCP301 CDS176266 234 + 0.495726
NA CP0178 IS3 ORF2pCP301 CDS146631 243 - 0.559671
NA CP0041 IS150 ORF BpCP301 CDS33299 408 - 0.490196
NA CP0213 ISSfl4 ORF3pCP301 CDS174476 1602 + 0.52372
NA CP0249 oriT nicking and unwinding proteinpCP301 CDS200577 3501 + 0.603542
NA CP0073 ISSfl1 ORF1pCP301 CDS58935 330 + 0.50303
NA CP0039 IS629 ORF2pCP301 CDS32084 669 - 0.542601
NA CP0206 ISSfl4 ORF1pCP301 CDS169705 675 - 0.502222
NA CP0157 IS600 ORF2pCP301 CDS136257 726 - 0.522039
NA CP0203 putative transposasepCP301 CDS167032 654 - 0.492355
NA CP0058 IS600 ORF1pCP301 CDS44413 303 - 0.458746
NA CP0077 iso-IS1 ORF2pCP301 CDS61397 183 + 0.546448
NA CP0068 putative protein encoded within ISpCP301 CDS51442 489 + 0.521472
NA CP0012 orf, conserved hypothetical proteinpCP301 CDS10620 378 - 0.537037
NA CP0247 oriT nicking and unwinding proteinpCP301 CDS198803 393 + 0.562341
insA CP0049 IS1 ORF1pCP301 CDS38753 228 + 0.52193
insB CP0051 IS1 ORF2pCP301 CDS39007 396 + 0.522727
insB CP0065 IS1 ORF2pCP301 CDS49783 459 + 0.546841
insB CP0220 IS1 ORF2pCP301 CDS178298 504 - 0.529762
ipaB CP0128 IpaB, secreted by the Mxi-Spa secretion machinery, required for entry into epithelial cellspCP301 CDS111248 1743 - 0.380952
spa32 CP0151 Spa32, secreted by and component of the Mxi-Spa machinerypCP301 CDS130937 879 + 0.315131
ycdA CP0198 orf, conserved hypothetical proteinpCP301 CDS164527 684 + 0.55848
yigB CP0253 orf, conserved hypothetical proteinpCP301 CDS205985 303 + 0.455446
yihA CP0257 orf, conserved hypothetical proteinpCP301 CDS208067 591 + 0.492386