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2024-05-18 20:12:51

Gene list

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COG category: Replication, recombination and repair
Genomic element: chromosome

Number of genes found: 171

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Geobacter sulfurreducens PCA, PCA
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA GSU0048 integrasechromosome CDS63072 837 + 0.584229
NA GSU0512 conserved hypothetical proteinchromosome CDS545697 1641 + 0.609385
NA GSU2170 ISGsu7, transposase OrfAchromosome CDS2383064 363 + 0.561983
NA GSU0133 hypothetical proteinchromosome CDS147502 1167 + 0.622965
NA GSU1359 helicase, putativechromosome CDS1484238 3126 + 0.626999
NA GSU1365 Mrr restriction system protein, putativechromosome CDS1494206 1047 + 0.510984
NA GSU2561 conserved domain proteinchromosome CDS2824228 525 - 0.657143
NA GSU1541 conserved hypothetical proteinchromosome CDS1695669 804 + 0.532338
NA GSU1021 hypothetical proteinchromosome CDS1101667 654 - 0.637615
NA GSU2139 ISGsu7, transposase OrfAchromosome CDS2356638 363 + 0.561983
NA GSU1544 hypothetical proteinchromosome CDS1697206 447 + 0.63311
NA GSU2397 conserved hypothetical proteinchromosome CDS2630204 216 + 0.513889
NA GSU1725 nuclease SbcCD, C subunit, putativechromosome CDS1889279 2442 + 0.602785
NA GSU0712 hypothetical proteinchromosome CDS760735 504 - 0.605159
NA GSU1450 endonuclease III, putativechromosome CDS1587992 630 + 0.574603
NA GSU2168 DNA repair protein RadCchromosome CDS2382140 492 + 0.556911
NA GSU0046 ISGsu6, transposase OrfAchromosome CDS61246 1026 + 0.587719
NA GSU0763 helicase, putativechromosome CDS815366 2724 - 0.559838
NA GSU0555 ISGsu7, transposase OrfAchromosome CDS589039 363 + 0.561983
NA GSU1355 ISGsu7, transposase OrfAchromosome CDS1480115 363 + 0.561983
NA GSU1223 hypothetical proteinchromosome CDS1327300 840 + 0.62619
NA GSU1711 integrative genetic element Gsu5, resolvasechromosome CDS1876910 573 - 0.556719
NA GSU2392 ISGsu7, transposase OrfAchromosome CDS2624404 363 - 0.561983
NA GSU2207 DNA polymerase III, delta subunit, putativechromosome CDS2421378 1014 - 0.606509
NA GSU1044 mutT/nudix family proteinchromosome CDS1132163 945 + 0.658201
NA GSU0057 CRISPR-associated protein Cas1/Cas4chromosome CDS72630 1680 + 0.635119
NA GSU0957 ISGsu1, transposasechromosome CDS1031690 1119 - 0.510277
NA GSU1199 nuclease, putativechromosome CDS1302927 564 + 0.634752
NA GSU1392 CRISPR-associated protein Cas1chromosome CDS1520569 921 + 0.634093
NA GSU3082 ISGsu7, transposase OrfAchromosome CDS3388646 363 + 0.561983
NA GSU0761 ISGsu7, transposase OrfBchromosome CDS813791 891 - 0.567901
NA GSU0167 conserved hypothetical protein, truncationchromosome CDS183332 306 + 0.591503
NA GSU1847 ISGsu7, transposase OrfAchromosome CDS2018274 363 + 0.561983
NA GSU1363 RNA-directed DNA polymerasechromosome CDS1491977 1143 + 0.381452
NA GSU0524 conserved hypothetical proteinchromosome CDS558887 708 - 0.658192
NA GSU2118 integrative genetic element Gsu21, integrasechromosome CDS2335994 1341 + 0.574198
NA GSU3345 hypothetical proteinchromosome CDS3674668 369 + 0.636856
NA GSU2391 ISGsu7, transposase OrfBchromosome CDS2623517 891 - 0.567901
NA GSU3266 DNA helicase II, putativechromosome CDS3581843 3237 - 0.67439
NA GSU2164 hypothetical proteinchromosome CDS2377156 3357 + 0.569556
NA GSU2829 deoxyribodipyrimidine photolyase, putativechromosome CDS3112696 1386 - 0.590188
NA GSU3377 helix-hairpin-helix domain proteinchromosome CDS3710946 687 - 0.622999
NA GSU2597 ISGsu2, transposasechromosome CDS2863246 1086 - 0.553407
NA GSU1078 chromosomal replication initiator protein DnaA, truncationchromosome CDS1166019 777 + 0.615187
NA GSU1422 nuclease SbcCD, C subunit, putativechromosome CDS1558869 2175 + 0.631724
NA GSU0695 hypothetical proteinchromosome CDS735097 720 - 0.647222
NA GSU3411 ATP-dependent DNA helicase PcrA, putativechromosome CDS3752116 2220 - 0.65045
NA GSU2128 ISGsu7, transposase OrfBchromosome CDS2346551 891 + 0.567901
NA GSU3086 conserved hypothetical proteinchromosome CDS3391779 1176 - 0.638605
NA GSU2594 ISGsu6, transposase OrfBchromosome CDS2859387 795 + 0.58239
NA GSU2141 ISGsu1, transposase, interruptionchromosome CDS2357866 1089 - 0.513315
NA GSU0564 conserved hypothetical proteinchromosome CDS595484 1224 + 0.433824
NA GSU1173 methylated-DNA-protein-cysteine methyltransferase, putativechromosome CDS1278520 549 + 0.652095
NA GSU3375 mutT/nudix family proteinchromosome CDS3709465 516 + 0.622093
NA GSU1797 ComEA-related proteinchromosome CDS1963098 570 - 0.519298
NA GSU1126 phage SPO1 DNA polymerase-related proteinchromosome CDS1210532 708 + 0.665254
NA GSU0252 ISGsu1, transposasechromosome CDS259068 1119 + 0.510277
NA GSU1724 nuclease SbcCD, D subunit, putativechromosome CDS1888023 1257 + 0.611774
NA GSU2772 ISGsu3, transposasechromosome CDS3052662 1089 - 0.549128
NA GSU2171 ISGsu7, transposase OrfBchromosome CDS2383423 891 + 0.567901
NA GSU0227 type II DNA modification methyltransferase, putativechromosome CDS234575 918 + 0.694989
NA GSU1712 hypothetical proteinchromosome CDS1877822 252 + 0.484127
NA GSU0081 hypothetical proteinchromosome CDS93366 264 + 0.613636
NA GSU3083 ISGsu7, transposase OrfBchromosome CDS3389005 891 + 0.567901
NA GSU2175 trfA-related proteinchromosome CDS2385731 840 + 0.533333
NA GSU0043 ImpB/MucB/SamB family proteinchromosome CDS52000 1242 + 0.63124
NA GSU2140 ISGsu7, transposase OrfBchromosome CDS2356997 891 + 0.567901
NA GSU0556 ISGsu7, transposase OrfBchromosome CDS589398 891 + 0.567901
NA GSU0954 conserved hypothetical proteinchromosome CDS1027076 981 - 0.557594
NA GSU0990 hypothetical proteinchromosome CDS1067946 1887 + 0.645469
NA GSU1297 ISGsu2, transposasechromosome CDS1416989 1086 + 0.553407
NA GSU3287 hydrolase, TatD familychromosome CDS3606699 777 + 0.662806
NA GSU0559 ISGsu2, transposasechromosome CDS590955 1086 + 0.553407
NA GSU1616 ImpB/MucB/SamB family proteinchromosome CDS1769602 1230 - 0.545528
NA GSU0723 conserved hypothetical proteinchromosome CDS772183 558 + 0.616487
NA GSU3244 hypothetical proteinchromosome CDS3556672 417 - 0.618705
NA GSU2279 ISGsu7, transposase OrfBchromosome CDS2495762 891 - 0.567901
NA GSU1421 nuclease SbcCD, D subunit, putativechromosome CDS1557739 1131 + 0.625995
NA GSU3084 hypothetical proteinchromosome CDS3389874 462 - 0.564935
NA GSU1613 A/G-specific adenine glycosylase, putativechromosome CDS1766767 858 - 0.607226
NA GSU2599 ISGsu4, transposasechromosome CDS2865265 1047 - 0.51767
NA GSU0058 CRISPR-associated protein Cas2, putativechromosome CDS74314 288 + 0.524306
NA GSU0547 MutS2 family proteinchromosome CDS579087 2379 + 0.684321
NA GSU2127 ISGsu7, transposase OrfAchromosome CDS2346192 363 + 0.561983
NA GSU0299 ISGsu1, transposasechromosome CDS328610 1119 - 0.510277
NA GSU1383 exonucleasechromosome CDS1511698 546 + 0.6337
NA GSU0961 ISGsu4, transposasechromosome CDS1034609 1047 - 0.51767
NA GSU2180 ISGsu1, transposasechromosome CDS2389747 1119 - 0.510277
NA GSU2280 ISGsu7, transposase OrfAchromosome CDS2496649 363 - 0.561983
NA GSU1356 ISGsu7, transposase OrfBchromosome CDS1480474 891 + 0.567901
NA GSU2471 group II intron, maturasechromosome CDS2709108 1305 - 0.608429
NA GSU2489 deoxyribonuclease, TatD familychromosome CDS2733951 1389 + 0.672426
NA GSU2593 ISGsu6, transposase OrfAchromosome CDS2858365 1026 + 0.587719
NA GSU2771 conserved hypothetical proteinchromosome CDS3051489 957 - 0.545455
NA GSU2067 ATPase, AAA familychromosome CDS2268975 1323 + 0.610733
NA GSU3354 mutT/nudix family proteinchromosome CDS3684928 522 - 0.653257
NA GSU0064 integrative genetic element Gsu32, integrasechromosome CDS79725 1320 - 0.55
NA GSU0650 conserved hypothetical protein TIGR00252chromosome CDS681407 387 + 0.591731
NA GSU3245 DNA polymerase II, putativechromosome CDS3557188 2238 - 0.643878
NA GSU0492 site-specific recombinase, phage integrase familychromosome CDS524995 885 - 0.635028
NA GSU2467 hypothetical protein/integrase, fusionchromosome CDS2705340 1374 - 0.558952
NA GSU2119 integrative genetic element Gsu56, integrasechromosome CDS2337618 1362 + 0.475037
NA GSU0762 ISGsu7, transposase OrfAchromosome CDS814678 363 - 0.561983
NA GSU1848 ISGsu7, transposase OrfBchromosome CDS2018633 891 + 0.567901
NA GSU2758 excinuclease ABC family proteinchromosome CDS3033064 5568 - 0.698815
NA GSU0955 group II intron, maturasechromosome CDS1029182 1305 + 0.608429
NA GSU1244 methyltransferase, putativechromosome CDS1345954 564 - 0.643617
NA GSU0552 conserved domain proteinchromosome CDS584623 1539 + 0.497726
NA GSU3159 mutT/nudix family proteinchromosome CDS3466266 555 + 0.69009
NA GSU2396 conserved hypothetical proteinchromosome CDS2629392 663 + 0.529412
NA GSU0047 ISGsu6, transposase OrfBchromosome CDS62268 795 + 0.58239
NA GSU3035 hypothetical proteinchromosome CDS3342011 423 - 0.605201
NA GSU2591 ISGsu5, transposasechromosome CDS2855722 783 + 0.54023
NA GSU1822 DNA mismatch repair protein MutSchromosome CDS1989919 2616 - 0.604358
dbpA GSU0189 ATP-dependent RNA helicase DbpAchromosome CDS201957 1383 + 0.63919
dinG GSU0363 ATP-dependent helicase DinGchromosome CDS394457 2523 - 0.653983
dnaA GSU0000.1 chromosomal replication initiator protein DnaAchromosome CDS30 1338 + 0.543348
dnaB GSU0998 replicative DNA helicasechromosome CDS1077822 1371 + 0.61415
dnaE GSU1401 DNA polymerase III, alpha subunitchromosome CDS1540372 3468 + 0.638697
dnaG GSU3090 DNA primasechromosome CDS3396176 1764 - 0.618481
dnaN GSU0001 DNA polymerase III, beta subunitchromosome CDS1594 1119 + 0.563896
dnaX GSU0094 DNA polymerase III, gamma and tau subunitschromosome CDS106783 1740 + 0.635057
drpA GSU2550 DNA processing protein DprAchromosome CDS2812608 1071 - 0.681606
gyrA GSU0004 DNA gyrase, A subunitchromosome CDS6417 2574 + 0.625486
gyrB GSU0003 DNA gyrase, B subunitchromosome CDS3901 2388 + 0.613065
holB GSU2230 DNA polymerase III, delta prime subunitchromosome CDS2445628 972 + 0.662551
hrpB GSU1838 ATP-dependent helicase HrpBchromosome CDS2003813 2541 - 0.677292
huP-1 GSU2602 DNA-binding protein HUchromosome CDS2869900 291 - 0.587629
huP-2 GSU3132 DNA-binding protein HUchromosome CDS3435206 285 - 0.614035
ihfA-1 GSU1521 integration host factor, alpha subunitchromosome CDS1668933 276 + 0.507246
ihfA-2 GSU2120 integration host factor, alpha subunitchromosome CDS2339126 276 + 0.413043
ihfB GSU1746 integration host factor, beta subunitchromosome CDS1911413 279 - 0.505376
ligA GSU0890 DNA ligase, NAD-dependentchromosome CDS949753 2013 - 0.670144
mfd GSU0017 transcription-repair coupling factorchromosome CDS25356 3474 - 0.645941
mutL GSU2001 DNA mismatch repair protein MutLchromosome CDS2192669 1821 - 0.655135
mutM GSU0997 formamidopyrimidine-DNA glycosylasechromosome CDS1076875 816 - 0.667892
mutT GSU0870 mutator mutT proteinchromosome CDS926968 414 + 0.637681
nfo GSU0529 endonuclease IVchromosome CDS563536 891 - 0.64422
polA GSU0541 DNA polymerase Ichromosome CDS572574 2676 + 0.665172
priA GSU0128 primosomal protein n`chromosome CDS141993 2256 + 0.673759
radC GSU0386 DNA repair protein RadCchromosome CDS418326 690 - 0.637681
recA GSU0145 recA proteinchromosome CDS161049 1017 + 0.629302
recB GSU1534 exodeoxyribonuclease V, beta subunitchromosome CDS1683437 3615 + 0.711757
recC GSU1533 exodeoxyribonuclease V, gamma subunitchromosome CDS1680246 3195 + 0.704225
recD GSU1535 exodeoxyribonuclease V, alpha subunitchromosome CDS1687048 1788 + 0.697427
recF GSU0002 recF proteinchromosome CDS2793 1098 + 0.612933
recG GSU1326 ATP-dependent DNA helicase RecGchromosome CDS1450443 2145 + 0.682517
recJ GSU2614 single-stranded-DNA-specific exonuclease RecJchromosome CDS2883767 1737 - 0.679908
recN GSU2064 DNA repair protein RecNchromosome CDS2263755 1677 - 0.658318
recO GSU0577 DNA repair protein RecOchromosome CDS606305 732 + 0.70082
recQ GSU0898 ATP-dependent DNA helicase RecQchromosome CDS963031 1812 + 0.684879
recR GSU0096 recombination protein RecRchromosome CDS109096 594 + 0.626263
rhlB GSU0522 ATP-dependent RNA helicase RhlBchromosome CDS555700 1332 + 0.638889
rhlE-1 GSU0491 ATP-dependent RNA helicase RhlEchromosome CDS523215 1353 - 0.644494
rhlE-2 GSU0914 ATP-dependent RNA helicase RhlEchromosome CDS980161 1344 + 0.6875
rnhA GSU2071 ribonuclease HIchromosome CDS2272223 450 - 0.626667
rnhB GSU0649 ribonuclease HIIchromosome CDS680763 654 + 0.620795
ruvA GSU1076 Holliday junction DNA helicase RuvAchromosome CDS1164434 600 + 0.6
ruvB GSU1077 Holliday junction DNA helicase RuvBchromosome CDS1165037 1017 + 0.631268
ruvC GSU1075 crossover junction endodeoxyribonuclease RuvCchromosome CDS1163943 495 + 0.620202
ssb-1 GSU2151 single-strand binding proteinchromosome CDS2368214 420 + 0.533333
ssb-2 GSU3117 single-strand binding proteinchromosome CDS3419688 441 + 0.643991
tag GSU0567 DNA-3-methyladenine glycosylase Ichromosome CDS597360 576 + 0.659722
topA GSU2549 DNA topoisomerase Ichromosome CDS2810320 2274 - 0.62533
uvrA GSU3325 excinuclease ABC, A subunitchromosome CDS3652846 2814 + 0.630419
uvrB GSU3262 excinuclease ABC, B subunitchromosome CDS3577166 1995 + 0.627569
uvrC GSU3279 excinuclease ABC, C subunitchromosome CDS3598194 1842 + 0.616721
xerD GSU1819 integrase/recombinase XerDchromosome CDS1984912 888 - 0.602477
xseA GSU1767 exodeoxyribonuclease VII, large subunitchromosome CDS1929198 1344 - 0.62128
xseB GSU1766 exodeoxyribonuclease VII, small subunitchromosome CDS1928901 231 - 0.510823
xth GSU1539 exodeoxyribonuclease IIIchromosome CDS1692893 816 + 0.676471