Gene list
Applied filters:
COG category: Replication, recombination and repair
Genomic element: chromosome
Number of genes found: 137
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View in Fasta format (Protein) | |
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| Saccharophagus degradans 2-40, 2-40 | ||||||||
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| Name | Locus tag | Product / Description | Genomic element | Type | Begin | Length | Strand | GC-content |
| NA | Sde_2806 | hypothetical protein | chromosome | CDS | 3540448 | 252 | - | 0.488095 |
| NA | Sde_0555 | DNA-3-methyladenine glycosylase I | chromosome | CDS | 676046 | 645 | + | 0.508527 |
| NA | Sde_1682 | SH3-like region | chromosome | CDS | 2150391 | 459 | - | 0.444444 |
| NA | Sde_1458 | Exodeoxyribonuclease VII | chromosome | CDS | 1881381 | 1365 | - | 0.510623 |
| NA | Sde_2961 | hypothetical protein | chromosome | CDS | 3763502 | 1713 | - | 0.461179 |
| NA | Sde_0023 | Filamentous haemagglutinin-like | chromosome | CDS | 26674 | 1200 | + | 0.499167 |
| NA | Sde_2021 | response regulator receiver domain protein (CheY-like) | chromosome | CDS | 2545625 | 717 | - | 0.48675 |
| NA | Sde_3681 | Pseudouridine synthase, Rsu | chromosome | CDS | 4664020 | 816 | + | 0.509804 |
| NA | Sde_1573 | Thiolase | chromosome | CDS | 2020305 | 2595 | + | 0.505973 |
| NA | Sde_2583 | Ribonuclease H | chromosome | CDS | 3277856 | 600 | - | 0.473333 |
| NA | Sde_0398 | topoisomerase IV subunit A | chromosome | CDS | 493437 | 2247 | + | 0.496662 |
| NA | Sde_3462 | ISGsu4, transposase | chromosome | CDS | 4402525 | 1134 | + | 0.402116 |
| NA | Sde_1337 | recombinational DNA repair protein | chromosome | CDS | 1733089 | 594 | + | 0.5 |
| NA | Sde_0195 | UvrD/REP helicase family protein | chromosome | CDS | 250515 | 1845 | - | 0.420596 |
| NA | Sde_1753 | excinuclease ABC, B subunit | chromosome | CDS | 2237679 | 2001 | + | 0.461269 |
| NA | Sde_0187 | Urease, beta subunit | chromosome | CDS | 235935 | 1836 | + | 0.428649 |
| NA | Sde_1881 | DNA ligase (NAD+) | chromosome | CDS | 2374707 | 2025 | + | 0.472099 |
| NA | Sde_3598 | methyl-accepting chemotaxis sensory transducer | chromosome | CDS | 4557518 | 609 | + | 0.528736 |
| NA | Sde_1288 | RecA protein | chromosome | CDS | 1652108 | 1047 | + | 0.461318 |
| NA | Sde_3065 | conserved hypothetical protein | chromosome | CDS | 3919239 | 546 | - | 0.467033 |
| NA | Sde_2604 | endonuclease III | chromosome | CDS | 3303473 | 684 | + | 0.486842 |
| NA | Sde_1509 | DNA topoisomerase III | chromosome | CDS | 1948021 | 1197 | + | 0.455305 |
| NA | Sde_0996 | single-stranded DNA-binding protein | chromosome | CDS | 1278410 | 528 | + | 0.526515 |
| NA | Sde_2135 | conserved hypothetical protein | chromosome | CDS | 2725856 | 297 | - | 0.481481 |
| NA | Sde_3474 | conserved hypothetical protein | chromosome | CDS | 4424650 | 5337 | - | 0.470114 |
| NA | Sde_0993 | Sodium:galactoside symporter | chromosome | CDS | 1272797 | 2841 | - | 0.514256 |
| NA | Sde_0474 | putative exonuclease involved in removal of stalled replication fork | chromosome | CDS | 579212 | 918 | - | 0.46841 |
| NA | Sde_2381 | helicase, putative | chromosome | CDS | 3018982 | 2163 | - | 0.465557 |
| NA | Sde_3671 | histidine kinase | chromosome | CDS | 4654239 | 786 | - | 0.464377 |
| NA | Sde_0575 | conserved hypothetical protein | chromosome | CDS | 710271 | 2688 | - | 0.434152 |
| NA | Sde_1783 | DNA topoisomerase | chromosome | CDS | 2274869 | 2712 | + | 0.466445 |
| NA | Sde_3623 | Transcription termination factor Rho | chromosome | CDS | 4596715 | 549 | - | 0.489982 |
| NA | Sde_1967 | conserved hypothetical protein | chromosome | CDS | 2471813 | 2544 | + | 0.41077 |
| NA | Sde_2919 | endonuclease containing a URI domain-like | chromosome | CDS | 3703876 | 321 | + | 0.542056 |
| NA | Sde_0729 | Deoxyribodipyrimidine photolyase | chromosome | CDS | 942049 | 1452 | - | 0.490358 |
| NA | Sde_3879 | Mannosyl-glycoproteinendo-beta-N-acetylglucosamidase | chromosome | CDS | 4890347 | 882 | - | 0.515873 |
| NA | Sde_1109 | helicase, ATP-dependent | chromosome | CDS | 1434761 | 3891 | + | 0.475199 |
| NA | Sde_1371 | DNA polymerase III, chi subunit | chromosome | CDS | 1774484 | 450 | - | 0.488889 |
| NA | Sde_1968 | site specific recombinase, phage integrase family | chromosome | CDS | 2474555 | 1248 | + | 0.474359 |
| NA | Sde_2241 | Helix-turn-helix, AraC type | chromosome | CDS | 2848836 | 708 | - | 0.451977 |
| NA | Sde_2182 | CheW-like protein | chromosome | CDS | 2775964 | 2031 | + | 0.377646 |
| NA | Sde_2394 | Exodeoxyribonuclease I | chromosome | CDS | 3036081 | 1458 | - | 0.449931 |
| NA | Sde_2796 | Transcription factor jumonji, jmjC | chromosome | CDS | 3527748 | 582 | + | 0.546392 |
| NA | Sde_0073 | serine/threonine protein kinase | chromosome | CDS | 92145 | 2781 | + | 0.509169 |
| NA | Sde_0425 | integrase/recombinase (XerC/CodV family) | chromosome | CDS | 524008 | 1122 | - | 0.44385 |
| NA | Sde_0858 | MutT/nudix family protein/thiamine-phosphate pyrophosphorylase, putative | chromosome | CDS | 1115111 | 954 | + | 0.506289 |
| NA | Sde_0911 | DNA-binding protein HU, putative | chromosome | CDS | 1176166 | 408 | - | 0.431373 |
| NA | Sde_0717 | histidine kinase | chromosome | CDS | 927937 | 1971 | - | 0.522577 |
| NA | Sde_1995 | exodeoxyribonuclease III | chromosome | CDS | 2510611 | 819 | + | 0.440781 |
| NA | Sde_0281 | conserved hypothetical protein | chromosome | CDS | 347913 | 978 | - | 0.453988 |
| NA | Sde_1106 | DNA-directed DNA polymerase | chromosome | CDS | 1428200 | 3522 | + | 0.489779 |
| NA | Sde_1833 | Heme exporter protein CcmA | chromosome | CDS | 2327310 | 1134 | - | 0.402116 |
| NA | Sde_1583 | tRNA (uracil-5-)-methyltransferase | chromosome | CDS | 2034219 | 306 | + | 0.45098 |
| NA | Sde_1256 | DNA mismatch repair protein MutS | chromosome | CDS | 1606793 | 2664 | - | 0.488363 |
| NA | Sde_0607 | conserved hypothetical protein | chromosome | CDS | 766205 | 978 | - | 0.464213 |
| NA | Sde_3017 | conserved hypothetical protein | chromosome | CDS | 3843871 | 978 | + | 0.447853 |
| NA | Sde_1970 | Transposase and inactivated derivatives TnpA family-like | chromosome | CDS | 2477202 | 3063 | + | 0.427359 |
| NA | Sde_3215 | conserved hypothetical protein | chromosome | CDS | 4093442 | 582 | - | 0.512028 |
| NA | Sde_1542 | DNA topoisomerase | chromosome | CDS | 1987808 | 1938 | + | 0.47678 |
| NA | Sde_3717 | ATP-dependent DNA helicase RecG | chromosome | CDS | 4703452 | 2088 | - | 0.538793 |
| NA | Sde_1213 | single-stranded-DNA-specific exonuclease RecJ | chromosome | CDS | 1557346 | 1746 | + | 0.496564 |
| NA | Sde_0197 | ATPase | chromosome | CDS | 254370 | 216 | - | 0.416667 |
| NA | Sde_3764 | DNA helicase II | chromosome | CDS | 4763134 | 2175 | - | 0.501149 |
| NA | Sde_1489 | ATP-dependent DNA helicase RecQ | chromosome | CDS | 1917782 | 1812 | - | 0.493929 |
| NA | Sde_0896 | Translation elongation factor Tu | chromosome | CDS | 1159292 | 720 | + | 0.509722 |
| NA | Sde_3567 | hypothetical protein | chromosome | CDS | 4526909 | 1875 | - | 0.509867 |
| NA | Sde_0196 | ATPase | chromosome | CDS | 252334 | 2001 | - | 0.436282 |
| NA | Sde_2474 | MutT/nudix family protein | chromosome | CDS | 3124825 | 549 | - | 0.459016 |
| NA | Sde_0620 | ATP-dependent RNA helicase RhlB | chromosome | CDS | 783386 | 1179 | + | 0.49279 |
| NA | Sde_2148 | DNA gyrase subunit A | chromosome | CDS | 2739614 | 2661 | - | 0.474258 |
| NA | Sde_2777 | transposase | chromosome | CDS | 3509402 | 240 | - | 0.429167 |
| NA | Sde_1925 | GGDEF family protein | chromosome | CDS | 2426940 | 1434 | - | 0.477685 |
| NA | Sde_1060 | TonB-dependent receptor | chromosome | CDS | 1359158 | 1467 | + | 0.510566 |
| NA | Sde_2507 | DNA-directed DNA polymerase | chromosome | CDS | 3177816 | 1077 | + | 0.43454 |
| NA | Sde_0347 | (di)nucleoside polyphosphate hydrolase, putative | chromosome | CDS | 431314 | 513 | + | 0.500975 |
| NA | Sde_0807 | methyltransferase | chromosome | CDS | 1053551 | 318 | - | 0.487421 |
| NA | Sde_3034 | ATP-dependent RNA helicase DeaD | chromosome | CDS | 3875326 | 1788 | + | 0.501119 |
| NA | Sde_2770 | 1-(5-Phosphoribosyl)-5-amino-4-imidazole- carboxylate (AIR) carboxylase | chromosome | CDS | 3503203 | 585 | - | 0.48547 |
| NA | Sde_0337 | Nucleoside diphosphate pyrophosphatase | chromosome | CDS | 421062 | 1068 | - | 0.53839 |
| NA | Sde_1985 | putative ferritin DPS-family DNA binding protein | chromosome | CDS | 2495382 | 507 | + | 0.42998 |
| NA | Sde_0001 | Parallel beta-helix repeat | chromosome | CDS | 383 | 1575 | + | 0.47873 |
| NA | Sde_3865 | conserved hypothetical protein | chromosome | CDS | 4871727 | 606 | - | 0.450495 |
| NA | Sde_2429 | ribonuclease T | chromosome | CDS | 3074780 | 696 | + | 0.49569 |
| NA | Sde_1199 | NUDIX hydrolase | chromosome | CDS | 1544157 | 537 | + | 0.549348 |
| NA | Sde_3638 | Exodeoxyribonuclease III xth | chromosome | CDS | 4615675 | 429 | + | 0.501166 |
| NA | Sde_2535 | Virulence factor MVIN-like | chromosome | CDS | 3206568 | 522 | - | 0.496169 |
| NA | Sde_1654 | ATPase | chromosome | CDS | 2121871 | 777 | + | 0.433719 |
| NA | Sde_2762 | Cellulose binding, type IV | chromosome | CDS | 3497771 | 1350 | + | 0.542963 |
| NA | Sde_3146 | Sigma-54 factor | chromosome | CDS | 4022503 | 357 | + | 0.498599 |
| NA | Sde_2142 | Flagellar motor switch protein FliM | chromosome | CDS | 2732617 | 360 | - | 0.491667 |
| NA | Sde_0004 | DNA topoisomerase (ATP-hydrolyzing) | chromosome | CDS | 4437 | 2427 | + | 0.465595 |
| NA | Sde_3711 | putative ATP-dependent RNA helicase | chromosome | CDS | 4698398 | 1311 | - | 0.460717 |
| NA | Sde_2669 | 2-polyprenylphenol 6-hydroxylase | chromosome | CDS | 3384460 | 1893 | - | 0.499736 |
| NA | Sde_0665 | ferritin and Dps | chromosome | CDS | 846183 | 468 | - | 0.455128 |
| NA | Sde_1752 | conserved hypothetical protein | chromosome | CDS | 2235298 | 2259 | + | 0.453741 |
| NA | Sde_0003 | RecF protein | chromosome | CDS | 3297 | 1104 | + | 0.451993 |
| NA | Sde_3678 | DEAD/DEAH box helicase-like | chromosome | CDS | 4662609 | 675 | + | 0.52 |
| NA | Sde_0880 | Aspartyl-tRNA synthetase | chromosome | CDS | 1139381 | 294 | - | 0.493197 |
| NA | Sde_2534 | Riboflavin kinase / FAD synthetase | chromosome | CDS | 3205923 | 624 | - | 0.464744 |
| NA | Sde_2533 | Isoleucyl-tRNA synthetase, class Ia | chromosome | CDS | 3204865 | 1035 | - | 0.489855 |
| NA | Sde_1335 | DNA-directed DNA polymerase | chromosome | CDS | 1730631 | 2073 | + | 0.524843 |
| NA | Sde_0647 | putative ATP-dependent RNA helicase DbpA | chromosome | CDS | 816509 | 1395 | + | 0.475986 |
| NA | Sde_3689 | Deoxyribonuclease V | chromosome | CDS | 4672502 | 687 | - | 0.42067 |
| NA | Sde_0002 | Multi antimicrobial extrusion protein MatE | chromosome | CDS | 2145 | 1104 | + | 0.444746 |
| NA | Sde_2743 | phage integrase | chromosome | CDS | 3472237 | 1254 | + | 0.4689 |
| NA | Sde_1680 | RNA polymerase associated protein-like | chromosome | CDS | 2147280 | 2625 | + | 0.462857 |
| NA | Sde_2005 | UvrD/REP helicase | chromosome | CDS | 2523991 | 3468 | + | 0.461073 |
| NA | Sde_3836 | DNA-binding protein HU | chromosome | CDS | 4836571 | 276 | - | 0.521739 |
| NA | Sde_0184 | ATP-dependent DNA helicase Rep | chromosome | CDS | 232297 | 2019 | - | 0.510649 |
| NA | Sde_1028 | Pantoate-beta-alanine ligase | chromosome | CDS | 1313031 | 3090 | - | 0.464401 |
| NA | Sde_2943 | histidine kinase | chromosome | CDS | 3739440 | 978 | + | 0.457055 |
| NA | Sde_3220 | putative exodeoxyribonuclease VII small subunit | chromosome | CDS | 4097404 | 339 | + | 0.463127 |
| NA | Sde_0282 | conserved hypothetical protein | chromosome | CDS | 349393 | 978 | - | 0.4591 |
| NA | Sde_1158 | exodeoxyribonuclease IX | chromosome | CDS | 1493307 | 870 | + | 0.532184 |
| NA | Sde_0198 | conserved hypothetical protein | chromosome | CDS | 254575 | 1668 | - | 0.417266 |
| NA | Sde_0466 | putative transcriptional regulator, Fis family | chromosome | CDS | 568059 | 1089 | - | 0.421488 |
| NA | Sde_3310 | Iojap-related protein | chromosome | CDS | 4221882 | 1047 | + | 0.501433 |
| NA | Sde_1796 | transcription-repair coupling protein Mfd | chromosome | CDS | 2286400 | 3462 | - | 0.453495 |
| NA | Sde_2055 | DNA repair system specific for alkylated DNA | chromosome | CDS | 2635126 | 615 | - | 0.411382 |
| NA | Sde_1695 | PAS/PAC sensor signal transduction histidine kinase | chromosome | CDS | 2166432 | 1335 | + | 0.507865 |
| NA | Sde_3055 | putative deoxyribonuclease | chromosome | CDS | 3907844 | 792 | - | 0.457071 |
| NA | Sde_2018 | NTP pyrophosphohydrolases containing a Zn-finger,probably nucleic-acid-binding | chromosome | CDS | 2541063 | 816 | - | 0.477941 |
| NA | Sde_1962 | AP endonuclease, family 1 | chromosome | CDS | 2466265 | 981 | - | 0.501529 |
| NA | Sde_1166 | conserved hypothetical protein | chromosome | CDS | 1501785 | 681 | + | 0.496329 |
| NA | Sde_2735 | Alkylhydroperoxidase AhpD core | chromosome | CDS | 3464973 | 1674 | + | 0.505974 |
| NA | Sde_3411 | DNA-directed DNA polymerase | chromosome | CDS | 4345533 | 648 | - | 0.442901 |
| NA | Sde_2694 | transcription elongation factor GreA | chromosome | CDS | 3419376 | 2211 | + | 0.490728 |
| NA | Sde_1218 | uracil-DNA glycosylase | chromosome | CDS | 1565787 | 657 | + | 0.467276 |
| NA | Sde_1511 | DNA polymerase elongation subunit | chromosome | CDS | 1949917 | 2385 | + | 0.448637 |
| NA | Sde_2756 | hypothetical protein | chromosome | CDS | 3488740 | 3489 | - | 0.527372 |
| NA | Sde_1652 | DNA-directed DNA polymerase | chromosome | CDS | 2120272 | 996 | + | 0.498996 |
| NA | Sde_2053 | 3-isopropylmalate dehydratase large subunit region | chromosome | CDS | 2632491 | 1839 | - | 0.493203 |
| NA | Sde_0370 | ADP-ribose pyrophosphatase | chromosome | CDS | 458219 | 618 | + | 0.506472 |
| NA | Sde_0374 | DNA topoisomerase (ATP-hydrolyzing) | chromosome | CDS | 461012 | 1896 | + | 0.492616 |
| NA | Sde_3125 | Deoxyribonuclease V | chromosome | CDS | 3999254 | 783 | + | 0.473819 |
| NA | Sde_3200 | Dystroglycan-type cadherin-like | chromosome | CDS | 4076735 | 1551 | - | 0.510638 |
| NA | Sde_1611 | DNA-binding protein HU | chromosome | CDS | 2072231 | 273 | + | 0.457875 |
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