Gene list
Applied filters:
COG category: Replication, recombination and repair
Genomic element: chromosome 1
Number of genes found: 115
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| Rhodobacter sphaeroides 2.4.1, 2.4.1; ATCC BAA-808 | ||||||||
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| Name | Locus tag | Product / Description | Genomic element | Type | Begin | Length | Strand | GC-content |
| NA | RSP_2684 | putative endonuclease involved in recombination | chromosome 1 | CDS | 1329031 | 483 | - | 0.708075 |
| NA | RSP_6018 | hypothetical protein | chromosome 1 | CDS | 355790 | 471 | - | 0.675159 |
| NA | RSP_1981 | Deoxyribodipyrimidine photolyase | chromosome 1 | CDS | 573941 | 1365 | - | 0.753846 |
| NA | RSP_1662 | Integrase/recombinase | chromosome 1 | CDS | 254119 | 1047 | + | 0.685769 |
| NA | RSP_1527 | Helicase, UvrD/Rep family | chromosome 1 | CDS | 114434 | 3321 | + | 0.728696 |
| NA | RSP_1388 | DNA-binding protein HU, form N | chromosome 1 | CDS | 3166447 | 288 | + | 0.670139 |
| NA | RSP_2092 | Putative uvrD/DNA Helicase II | chromosome 1 | CDS | 688026 | 2352 | + | 0.67602 |
| NA | RSP_1466 | Putative mutY, A/G-specific adenine glycosylase | chromosome 1 | CDS | 51659 | 1104 | + | 0.73913 |
| NA | RSP_1206 | putative phosphohydrolase (mutT/nudix family protein) | chromosome 1 | CDS | 2977634 | 588 | - | 0.719388 |
| NA | RSP_2679 | ATP-dependent DNA ligase | chromosome 1 | CDS | 1323185 | 2607 | - | 0.711546 |
| NA | RSP_2749 | putative P4-family integrase | chromosome 1 | CDS | 1399432 | 1320 | + | 0.715151 |
| NA | RSP_1793 | Single-strand DNA binding protein | chromosome 1 | CDS | 379339 | 522 | - | 0.699234 |
| NA | RSP_2361 | putative integrase/resolvase recombinase protein phage-related integrase | chromosome 1 | CDS | 987339 | 1818 | - | 0.625963 |
| NA | RSP_0675 | putative TatD-related deoxyribonuclease | chromosome 1 | CDS | 2416607 | 798 | + | 0.704261 |
| NA | RSP_0563 | putative site-specific recombinase | chromosome 1 | CDS | 2300496 | 921 | + | 0.743757 |
| NA | RSP_0419 | conserved hypothetical protein | chromosome 1 | CDS | 2152500 | 678 | + | 0.731563 |
| NA | RSP_2177 | hypothetical protein | chromosome 1 | CDS | 781012 | 1119 | + | 0.762288 |
| NA | RSP_0708 | NUDIX hydrolase | chromosome 1 | CDS | 2452809 | 954 | - | 0.727463 |
| NA | RSP_1346 | DNA gyrase, subunit B | chromosome 1 | CDS | 3115048 | 2436 | + | 0.673235 |
| NA | RSP_1458 | Putative DNA repair enzyme | chromosome 1 | CDS | 43365 | 1605 | - | 0.747041 |
| NA | RSP_0572 | putative exonuclease | chromosome 1 | CDS | 2311564 | 2088 | - | 0.724138 |
| NA | RSP_2497 | ATPase | chromosome 1 | CDS | 1141281 | 654 | - | 0.643731 |
| NA | RSP_2080 | Putative Tyrosine recombinase | chromosome 1 | CDS | 674362 | 1026 | + | 0.688109 |
| NA | RSP_0674 | Putative HolB DNA polymerase III delta prime subunit | chromosome 1 | CDS | 2415483 | 1113 | + | 0.743935 |
| NA | RSP_0567 | Probable Methylated-DNA-(protein)-cysteine S-methyltransferase | chromosome 1 | CDS | 2303964 | 444 | - | 0.738739 |
| NA | RSP_2727 | probable 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase | chromosome 1 | CDS | 1377774 | 630 | + | 0.736508 |
| NA | RSP_0959 | ATPase | chromosome 1 | CDS | 2715617 | 1701 | - | 0.707231 |
| NA | RSP_6050 | conserved hypothetical protein | chromosome 1 | CDS | 1012902 | 825 | - | 0.726061 |
| NA | RSP_2898 | putative DNA polymerase III chi subunit | chromosome 1 | CDS | 1573457 | 459 | - | 0.732026 |
| NA | RSP_2143 | DNA photolyase, Cryptochrome 1 apoprotein (Blue light photoreceptor) | chromosome 1 | CDS | 744522 | 1416 | + | 0.721751 |
| NA | RSP_0136 | putative integrase for prophage CP-933U | chromosome 1 | CDS | 1851235 | 834 | + | 0.671463 |
| NA | RSP_1343 | DNA polymerase III, beta chain | chromosome 1 | CDS | 3112260 | 1119 | + | 0.663986 |
| NA | RSP_2381 | putative 3-methyladenine DNA glycosylase | chromosome 1 | CDS | 1010544 | 555 | + | 0.722522 |
| NA | RSP_2185 | nuclease (SNase-like) | chromosome 1 | CDS | 791845 | 681 | + | 0.737151 |
| NA | RSP_1678 | putative RecO protein | chromosome 1 | CDS | 267436 | 720 | + | 0.733333 |
| NA | RSP_1032 | possible O6-methylguanine-DNA methyltransferase | chromosome 1 | CDS | 2796013 | 849 | + | 0.730271 |
| NA | RSP_1028 | DNA polymerase I | chromosome 1 | CDS | 2790472 | 2814 | + | 0.677328 |
| NA | RSP_1651 | hypothetical protein | chromosome 1 | CDS | 245668 | 438 | - | 0.694064 |
| NA | RSP_2353 | conserved hypothetical protein | chromosome 1 | CDS | 979786 | 396 | - | 0.719697 |
| NA | RSP_2388 | conserved hypothetical protein | chromosome 1 | CDS | 1017366 | 501 | - | 0.698603 |
| NA | RSP_1966 | possible ISSod13, transposase | chromosome 1 | CDS | 558661 | 876 | - | 0.634703 |
| NA | RSP_1627 | Putative N-6 adenine-specific DNA methylase | chromosome 1 | CDS | 223468 | 807 | - | 0.681537 |
| NA | RSP_1031 | Endonuclease III | chromosome 1 | CDS | 2795256 | 645 | - | 0.666667 |
| NA | RSP_1968 | Possible integrase/recombinase | chromosome 1 | CDS | 559600 | 891 | + | 0.672278 |
| NA | RSP_1743 | ATPase, AAA family | chromosome 1 | CDS | 324610 | 1314 | + | 0.69102 |
| NA | RSP_2013 | DEAD/DEAH box helicase | chromosome 1 | CDS | 613899 | 2427 | - | 0.756902 |
| NA | RSP_0730 | conserved hypothetical protein | chromosome 1 | CDS | 2473891 | 2505 | + | 0.724551 |
| NA | RSP_0621 | Possible DNA helicase | chromosome 1 | CDS | 2356523 | 5148 | + | 0.680847 |
| NA | RSP_1525 | putative Helicase/Exonuclease | chromosome 1 | CDS | 111412 | 2994 | + | 0.748163 |
| NA | RSP_1814 | conserved hypothetical protein | chromosome 1 | CDS | 402740 | 354 | + | 0.711864 |
| NA | RSP_0780 | hypothetical protein with ATP/GTP-binding site | chromosome 1 | CDS | 2523636 | 681 | + | 0.735683 |
| NA | RSP_1339 | Formamidopyrimidine-DNA glycolase | chromosome 1 | CDS | 3108159 | 852 | + | 0.70892 |
| NA | RSP_1468 | Site-specific DNA-methyltransferase | chromosome 1 | CDS | 54227 | 1119 | - | 0.660411 |
| NA | RSP_0946 | putative DNA topoisomerase I protein | chromosome 1 | CDS | 2698229 | 1035 | + | 0.713043 |
| NA | RSP_1485 | ATP-dependent RNA helicase | chromosome 1 | CDS | 70529 | 1809 | - | 0.726921 |
| NA | RSP_0744 | DNA-3-methyladenine glycosylase I | chromosome 1 | CDS | 2488629 | 588 | - | 0.688776 |
| NA | RSP_1696 | DNA topoisomerase IV, A subunit | chromosome 1 | CDS | 284679 | 2304 | + | 0.687066 |
| NA | RSP_0901 | N-6 Adenine-specific DNA methylase | chromosome 1 | CDS | 2651080 | 555 | + | 0.731532 |
| NA | RSP_2865 | putative transposase | chromosome 1 | CDS | 1435363 | 1380 | - | 0.681159 |
| NA | RSP_0003 | putative site-specific recombinase | chromosome 1 | CDS | 1704748 | 1530 | - | 0.512418 |
| NA | RSP_1208 | NUDIX hydrolase | chromosome 1 | CDS | 2979276 | 438 | + | 0.69863 |
| NA | RSP_6230 | hypothetical protein | chromosome 1 | CDS | 2812006 | 501 | - | 0.696607 |
| NA | RSP_0405 | probable single-stranded DNA-specific exonuclease | chromosome 1 | CDS | 2137250 | 1752 | + | 0.750571 |
| NA | RSP_2052 | N6 adenine-specific DNA methyltransferase, D12 class | chromosome 1 | CDS | 646227 | 807 | - | 0.682776 |
| NA | RSP_2040 | possible Transposase fragment | chromosome 1 | CDS | 635422 | 198 | + | 0.651515 |
| NA | RSP_0838 | putative DNA polymerase III, delta subunit / DNA binding | chromosome 1 | CDS | 2586898 | 993 | - | 0.718026 |
| NA | RSP_0604 | conserved hypothetical protein | chromosome 1 | CDS | 2344845 | 1371 | - | 0.677608 |
| NA | RSP_1400 | UMUC-like DNA-repair protein | chromosome 1 | CDS | 3177849 | 1350 | - | 0.713333 |
| NA | RSP_2123 | Radical SAM domain protein | chromosome 1 | CDS | 723994 | 1089 | + | 0.728191 |
| NA | RSP_1001 | hypothetical protein | chromosome 1 | CDS | 2759368 | 783 | - | 0.738186 |
| NA | RSP_2232 | putative uracil-DNA glycosylase | chromosome 1 | CDS | 849420 | 1425 | - | 0.72 |
| DnaE | RSP_1123 | DNA polymerase III, alpha subunit | chromosome 1 | CDS | 2885063 | 2823 | - | 0.676585 |
| dnaA | RSP_1342 | chromosomal replication initiator protein, DnaA | chromosome 1 | CDS | 3110775 | 1368 | + | 0.66155 |
| dnaB | RSP_1928 | Replicative DNA helicase, DnaB | chromosome 1 | CDS | 525735 | 1491 | - | 0.678739 |
| dnaG | RSP_0397 | DNA primase (DnaG) | chromosome 1 | CDS | 2127147 | 1932 | - | 0.710145 |
| dnaQ | RSP_1236 | putative DNA polymerase III, epsilon subunit and related 3'-5' exonucleases | chromosome 1 | CDS | 3007281 | 690 | + | 0.695652 |
| dnaX | RSP_0710 | DNA polymerase III tau and gamma subunits | chromosome 1 | CDS | 2456212 | 1749 | + | 0.70669 |
| gyrA | RSP_2630 | DNA gyrase/topoisomerase IV, subunit A | chromosome 1 | CDS | 1268272 | 2724 | - | 0.672173 |
| ialA | RSP_0931 | NUDIX hydrolase | chromosome 1 | CDS | 2680710 | 489 | - | 0.674847 |
| ihfA | RSP_2611 | Histone-like DNA-binding protein (IHF) | chromosome 1 | CDS | 1252322 | 303 | - | 0.653465 |
| int | RSP_0217 | possible phage-related integrase | chromosome 1 | CDS | 1930262 | 1242 | - | 0.688406 |
| lig2 | RSP_2413 | putative ATP-dependent DNA Ligase | chromosome 1 | CDS | 1043632 | 1602 | - | 0.703496 |
| ligA | RSP_2622 | DNA ligase | chromosome 1 | CDS | 1260334 | 2115 | + | 0.703546 |
| mfd | RSP_2850 | transcription-repair coupling factor (helicase) | chromosome 1 | CDS | 1453666 | 3498 | - | 0.683533 |
| mgpS | RSP_2422 | putative ATP-dependent helicase, MgpS | chromosome 1 | CDS | 1052447 | 2793 | + | 0.699606 |
| mutL | RSP_1095 | DNA mismatch repair protein | chromosome 1 | CDS | 2852002 | 1899 | - | 0.726698 |
| mutS | RSP_1218 | DNA mismatch repair protein MutS | chromosome 1 | CDS | 2989762 | 2628 | + | 0.708904 |
| mutT | RSP_1166 | NTP pyrophosphohydrolase | chromosome 1 | CDS | 2930353 | 399 | - | 0.689223 |
| parE | RSP_0772 | DNA topoisomerase II/DNA gyrase, subunit B | chromosome 1 | CDS | 2511924 | 1992 | + | 0.663655 |
| priA | RSP_0560 | Probable pimosomal protein N' | chromosome 1 | CDS | 2296841 | 2193 | - | 0.737346 |
| radC | RSP_1171 | DNA repair protein | chromosome 1 | CDS | 2937519 | 765 | - | 0.679739 |
| recA | RSP_0452 | Recombinase A, DNA recombination protein | chromosome 1 | CDS | 2184461 | 1074 | - | 0.636872 |
| recF | RSP_1344 | RecF protein | chromosome 1 | CDS | 3113431 | 1107 | + | 0.711834 |
| recG | RSP_2623N | Haem peroxidase | chromosome 1 | CDS | 1262445 | 2088 | + | 0.722222 |
| recN | RSP_2118 | DNA repair protein RecN | chromosome 1 | CDS | 718756 | 1641 | + | 0.738574 |
| recQ | RSP_1359 | DEAD/DEAH box helicase | chromosome 1 | CDS | 3137121 | 2046 | - | 0.717986 |
| recR | RSP_0712 | recombination protein RecR | chromosome 1 | CDS | 2458319 | 600 | + | 0.718333 |
| rhlE | RSP_2536 | ATP-dependent helicase, DEAD-box | chromosome 1 | CDS | 1178520 | 1557 | - | 0.691073 |
| rhlE2 | RSP_0819 | DEAD/DEAH box helicase | chromosome 1 | CDS | 2564430 | 1386 | + | 0.708514 |
| rnhA | RSP_0867 | ribonuclease H | chromosome 1 | CDS | 2617237 | 528 | + | 0.689394 |
| rnhB | RSP_1470 | ribonuclease HII | chromosome 1 | CDS | 55434 | 639 | - | 0.665102 |
| ruvA | RSP_0555 | Holliday junction DNA helicase ruvA | chromosome 1 | CDS | 2292945 | 675 | - | 0.721482 |
| ruvB | RSP_0553 | Holiday junction DNA helicase RuvB | chromosome 1 | CDS | 2290834 | 1026 | - | 0.712476 |
| ruvC | RSP_0556 | Holliday junction nuclease RuvC | chromosome 1 | CDS | 2293616 | 507 | - | 0.680473 |
| topA | RSP_2178 | DNA topoisomerase I | chromosome 1 | CDS | 782378 | 2655 | + | 0.682109 |
| trgB | RSP_2146 | Tellurite resistance protein | chromosome 1 | CDS | 747648 | 1086 | + | 0.742173 |
| uvrA | RSP_2966 | ABC excinuclease subunit A | chromosome 1 | CDS | 1648123 | 2859 | - | 0.667366 |
| uvrB | RSP_2083 | Putative Excinuclease subunit B | chromosome 1 | CDS | 676895 | 2184 | + | 0.666209 |
| uvrC | RSP_1074 | Excinuclease ABC, C subunit | chromosome 1 | CDS | 2829001 | 1872 | - | 0.678953 |
| xerD | RSP_2815 | Probable integrase/recombinase XerD | chromosome 1 | CDS | 1497308 | 936 | + | 0.705128 |
| xseA | RSP_1845 | Exonuclease VII, large subunit | chromosome 1 | CDS | 435848 | 1560 | - | 0.744231 |
| xseB | RSP_1136 | exonuclease VII small subunit | chromosome 1 | CDS | 2899610 | 240 | - | 0.658333 |
| xthA | RSP_2657 | Exodeoxyribonuclease III | chromosome 1 | CDS | 1299328 | 780 | - | 0.685897 |
| xthA1 | RSP_0848 | Exodeoxyribonuclease III | chromosome 1 | CDS | 2598593 | 789 | + | 0.662864 |
| ydjG | RSP_2260 | hypothetical protein | chromosome 1 | CDS | 877250 | 1098 | - | 0.724954 |
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