Gene list
Applied filters:
COG category: Replication, recombination and repair
Genomic element: chromosome
Number of genes found: 166
Show UniProt / TrEMBL protein name | View in Fasta format (DNA) | View in Fasta format (Protein) | ||||
Porphyromonas gingivalis W83, W83 | ||||||||
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Name | Locus tag | Product / Description | Genomic element | Type | Begin | Length | Strand | GC-content |
NA | PG0574 | hypothetical protein | chromosome | CDS | 629158 | 474 | + | 0.487342 |
NA | PG1205 | DNA-binding protein, histone-like family | chromosome | CDS | 1284093 | 471 | + | 0.456476 |
NA | PG0062 | TPR domain protein | chromosome | CDS | 73828 | 2043 | + | 0.530103 |
NA | PG1983 | CRISPR-associated protein, TM1791 family | chromosome | CDS | 2072771 | 762 | - | 0.430446 |
NA | PG0050 | ISPg4, transposase | chromosome | CDS | 61056 | 1158 | + | 0.453368 |
NA | PG1420 | ISPg5, transposase Orf2 | chromosome | CDS | 1505586 | 939 | + | 0.500533 |
NA | PG0223 | exonuclease | chromosome | CDS | 257209 | 492 | - | 0.581301 |
NA | PG0820 | integrase | chromosome | CDS | 878721 | 1203 | + | 0.454697 |
NA | PG0199 | TatD family protein | chromosome | CDS | 237514 | 714 | - | 0.481793 |
NA | PG1300 | conserved hypothetical protein | chromosome | CDS | 1378620 | 540 | - | 0.464815 |
NA | PG2072 | UvrD/REP helicase domain protein | chromosome | CDS | 2167509 | 3309 | + | 0.510124 |
NA | PG0915 | conserved hypothetical protein | chromosome | CDS | 976725 | 393 | + | 0.386768 |
NA | PG1622 | DNA topoisomerase IV, A subunit, putative | chromosome | CDS | 1701508 | 2697 | - | 0.503152 |
NA | PG1244 | ISPg1, transposase | chromosome | CDS | 1319674 | 1086 | + | 0.486188 |
NA | PG1230 | hypothetical protein | chromosome | CDS | 1306050 | 2109 | - | 0.524893 |
NA | PG1113 | integrase | chromosome | CDS | 1185613 | 1224 | - | 0.535131 |
NA | PG1389 | DNA-binding protein, histone-like family | chromosome | CDS | 1470960 | 459 | - | 0.538126 |
NA | PG0384 | MutS2 family protein | chromosome | CDS | 416235 | 2523 | + | 0.520412 |
NA | PG1031 | ISPg1, transposase | chromosome | CDS | 1093171 | 1086 | - | 0.481584 |
NA | PG2009 | DNA repair protein RecO, putative | chromosome | CDS | 2098454 | 738 | + | 0.445799 |
NA | PG2194 | ISPg4, transposase | chromosome | CDS | 2301052 | 1158 | - | 0.452504 |
NA | PG0875 | mobilizable transposon, tnpA protein | chromosome | CDS | 938192 | 903 | - | 0.415282 |
NA | PG2128 | ISPg5, transposase Orf2 | chromosome | CDS | 2233957 | 939 | - | 0.497338 |
NA | PG1480 | conjugative transposon protein TraI | chromosome | CDS | 1555356 | 630 | - | 0.5 |
NA | PG1453 | integrase | chromosome | CDS | 1535739 | 1203 | - | 0.454697 |
NA | PG1350 | ISPg2, transposase | chromosome | CDS | 1431006 | 1131 | + | 0.418214 |
NA | PG0330 | DNA-binding protein, histone-like family | chromosome | CDS | 364568 | 516 | - | 0.600775 |
NA | PG1500 | conserved domain protein | chromosome | CDS | 1576239 | 2292 | + | 0.522251 |
NA | PG0874 | mobilizable transposon, int protein | chromosome | CDS | 937000 | 1104 | - | 0.432065 |
NA | PG0225 | ISPg4, transposase | chromosome | CDS | 258575 | 1158 | - | 0.457686 |
NA | PG0041 | ISPg5 transposase Orf2 | chromosome | CDS | 48517 | 939 | + | 0.502662 |
NA | PG1103 | ATPase, AAA family | chromosome | CDS | 1173745 | 1305 | + | 0.533333 |
NA | PG1038 | ATP-dependent DNA helicase UvrD/PcrA/Rep Family | chromosome | CDS | 1102884 | 2298 | + | 0.485205 |
NA | PG0838 | integrase | chromosome | CDS | 895617 | 1299 | + | 0.498845 |
NA | PG0861 | helicase, SNF2/RAD54 family | chromosome | CDS | 919387 | 3483 | + | 0.479759 |
NA | PG1061 | ISPg6, transposase | chromosome | CDS | 1128820 | 1089 | - | 0.431589 |
NA | PG0566 | DNA-binding protein, histone-like family | chromosome | CDS | 623025 | 507 | - | 0.540434 |
NA | PG2020 | CRISPR-associated protein, TM1814 family | chromosome | CDS | 2111698 | 666 | - | 0.492492 |
NA | PG1852 | exonuclease | chromosome | CDS | 1951284 | 780 | - | 0.49359 |
NA | PG0194 | ISPg3, transposase | chromosome | CDS | 231068 | 903 | + | 0.410853 |
NA | PG1673 | ISPg4, transposase | chromosome | CDS | 1758528 | 1158 | + | 0.455959 |
NA | PG1388 | hypothetical protein | chromosome | CDS | 1470185 | 795 | - | 0.539623 |
NA | PG0819 | integrase | chromosome | CDS | 877466 | 1230 | + | 0.472358 |
NA | PG0426 | ISPg5, transposase Orf2 | chromosome | CDS | 464250 | 939 | - | 0.502662 |
NA | PG0184 | ISPg1, transposase | chromosome | CDS | 216542 | 1086 | + | 0.481584 |
NA | PG1281 | hypothetical protein | chromosome | CDS | 1358988 | 1164 | + | 0.456186 |
NA | PG1624 | ISPg1, transposase | chromosome | CDS | 1706278 | 1086 | - | 0.481584 |
NA | PG0908 | G/U mismatch-specific DNA glycosylase, putative | chromosome | CDS | 971320 | 492 | - | 0.487805 |
NA | PG0086 | ATP-dependent RNA helicase, DEAD/DEAH box family | chromosome | CDS | 100635 | 1815 | - | 0.50303 |
NA | PG2099 | ATP-dependent RNA helicase, DEAD/DEAH box family | chromosome | CDS | 2206739 | 1284 | - | 0.560748 |
NA | PG1658 | ISPg4, transposase | chromosome | CDS | 1741837 | 1158 | - | 0.457686 |
NA | PG0458 | ISPg5, transposase Orf2 | chromosome | CDS | 500615 | 939 | - | 0.502662 |
NA | PG0798 | ISPg3, transposase | chromosome | CDS | 852985 | 903 | + | 0.408638 |
NA | PG0487 | ISPg4, transposase | chromosome | CDS | 526366 | 1158 | - | 0.457686 |
NA | PG1072 | MutS family protein | chromosome | CDS | 1139116 | 1392 | + | 0.438218 |
NA | PG0222 | DNA-binding protein, histone-like family | chromosome | CDS | 256003 | 468 | - | 0.549145 |
NA | PG2047 | helicase, putative | chromosome | CDS | 2145848 | 2286 | - | 0.51706 |
NA | PG1691 | conserved domain protein | chromosome | CDS | 1775870 | 705 | - | 0.510638 |
NA | PG1177 | ISPg1, transposase | chromosome | CDS | 1257884 | 1086 | - | 0.481584 |
NA | PG1697 | type II restriction endonuclease, putative | chromosome | CDS | 1781160 | 3975 | + | 0.485031 |
NA | PG0851 | conserved hypothetical protein | chromosome | CDS | 911656 | 1167 | - | 0.466153 |
NA | PG2040 | DNA-binding protein, histone-like family | chromosome | CDS | 2138488 | 477 | - | 0.534591 |
NA | PG2101 | hypothetical protein | chromosome | CDS | 2210368 | 996 | - | 0.517068 |
NA | PG1433 | hydrolase | chromosome | CDS | 1518971 | 216 | + | 0.490741 |
NA | PG0865 | ISPg2, transposase | chromosome | CDS | 927856 | 1131 | - | 0.418214 |
NA | PG0549 | ISPg1, transposase | chromosome | CDS | 606077 | 1086 | - | 0.486188 |
NA | PG1032 | ISPg3, transposase | chromosome | CDS | 1094473 | 903 | + | 0.40753 |
NA | PG1906 | ISPg1, transposase | chromosome | CDS | 2005547 | 1086 | + | 0.481584 |
NA | PG2176 | ISPg2, transposase | chromosome | CDS | 2283305 | 1131 | - | 0.418214 |
NA | PG0460 | ISPg1, transposase | chromosome | CDS | 502077 | 1086 | + | 0.486188 |
NA | PG1448 | ISPg1, transposase | chromosome | CDS | 1532424 | 1086 | + | 0.481584 |
NA | PG0177 | ISPg4, transposase | chromosome | CDS | 199227 | 1158 | + | 0.457686 |
NA | PG0277 | ISPg2, transposase | chromosome | CDS | 308996 | 1131 | + | 0.418214 |
NA | PG1303 | helicase, putative | chromosome | CDS | 1380792 | 1416 | + | 0.500706 |
NA | PG0864 | site-specific recombinase, resolvase family | chromosome | CDS | 927139 | 621 | - | 0.465378 |
NA | PG0172 | exonuclease | chromosome | CDS | 193633 | 783 | + | 0.536398 |
NA | PG1982 | CRISPR-associated protein Cas1 | chromosome | CDS | 2069615 | 3096 | - | 0.50646 |
NA | PG1248 | conserved hypothetical protein | chromosome | CDS | 1325891 | 732 | - | 0.515027 |
NA | PG0816 | hypothetical protein | chromosome | CDS | 876476 | 474 | - | 0.489451 |
NA | PG1276 | DNA-binding protein, histone-like family | chromosome | CDS | 1353085 | 507 | + | 0.540434 |
NA | PG0008 | ISPg5 transposase Orf2 | chromosome | CDS | 7175 | 939 | - | 0.497338 |
NA | PG0783 | hydrolase, putative | chromosome | CDS | 834968 | 828 | - | 0.460145 |
NA | PG1710 | ISPg5, transposase Orf2 | chromosome | CDS | 1795497 | 939 | + | 0.500533 |
NA | PG2057 | ISPg5, transposase Orf2 | chromosome | CDS | 2155099 | 939 | - | 0.504792 |
NA | PG1644 | ISPg5, transposase Orf2 | chromosome | CDS | 1724771 | 939 | - | 0.499468 |
NA | PG1533 | Toprim domain protein | chromosome | CDS | 1611803 | 2049 | - | 0.43143 |
NA | PG0932 | DNA polymerase III, delta prime subunit, putative | chromosome | CDS | 988643 | 1251 | + | 0.529976 |
NA | PG0949 | conserved hypothetical protein | chromosome | CDS | 1008826 | 1008 | + | 0.499008 |
NA | PG1000 | hypothetical protein | chromosome | CDS | 1057734 | 633 | + | 0.472354 |
NA | PG0461 | ISPg7, transposase | chromosome | CDS | 503529 | 1308 | - | 0.446483 |
NA | PG1746 | ISPg2, transposase | chromosome | CDS | 1831190 | 1131 | - | 0.418214 |
NA | PG0019 | ISPg4 transposase | chromosome | CDS | 22180 | 1158 | + | 0.455095 |
NA | PG0261 | ISPg3, transposase | chromosome | CDS | 293952 | 903 | - | 0.409745 |
NA | PG1320 | ISPg1, transposase, internal deletion | chromosome | CDS | 1398892 | 636 | + | 0.47956 |
NA | PG1454 | integrase | chromosome | CDS | 1536967 | 1230 | - | 0.472358 |
NA | PG0591 | ISPg5, transposase Orf2 | chromosome | CDS | 648624 | 939 | + | 0.499468 |
NA | PG1985 | CRISPR-associated protein, TM1792 family | chromosome | CDS | 2073969 | 702 | - | 0.42735 |
NA | PG2202 | conserved hypothetical protein TIGR00250 | chromosome | CDS | 2309607 | 417 | - | 0.563549 |
NA | PG1496 | hypothetical protein | chromosome | CDS | 1573482 | 276 | + | 0.507246 |
NA | PG0787 | hypothetical protein | chromosome | CDS | 837815 | 243 | + | 0.477366 |
NA | PG1261 | ISPg4, transposase | chromosome | CDS | 1338511 | 1158 | + | 0.454231 |
NA | PG0943 | ISPg5, transposase Orf2 | chromosome | CDS | 1002652 | 939 | + | 0.500533 |
NA | PG0368 | DNA topoisomerase IV, B subunit, putative | chromosome | CDS | 401385 | 1935 | + | 0.517313 |
NA | PG0970 | ISPg4, transposase | chromosome | CDS | 1029746 | 1158 | + | 0.457686 |
NA | PG1494 | conserved hypothetical protein | chromosome | CDS | 1569981 | 1314 | + | 0.541096 |
NA | PG0459 | ISPg5, transposase Orf1 | chromosome | CDS | 501607 | 378 | - | 0.47619 |
NA | PG1316 | hypothetical protein | chromosome | CDS | 1396331 | 531 | - | 0.474576 |
NA | PG0825 | ISPg1, transposase | chromosome | CDS | 882153 | 1086 | - | 0.481584 |
NA | PG1735 | MutT/nudix family protein | chromosome | CDS | 1822618 | 555 | - | 0.502703 |
NA | PG0517 | hypothetical protein | chromosome | CDS | 559305 | 2883 | - | 0.468956 |
NA | PG0128 | conserved domain protein | chromosome | CDS | 149734 | 975 | + | 0.565128 |
NA | PG1262 | ISPg3, transposase | chromosome | CDS | 1339822 | 903 | - | 0.408638 |
NA | PG1362 | conserved hypothetical protein | chromosome | CDS | 1442230 | 1455 | - | 0.485223 |
NA | PG0841 | mobilizable transposon, excision protein, putative | chromosome | CDS | 902871 | 894 | - | 0.505593 |
NA | PG1874 | conserved hypothetical protein | chromosome | CDS | 1969343 | 408 | - | 0.536765 |
NA | PG1197 | ISPg1, transposase | chromosome | CDS | 1275565 | 1086 | - | 0.481584 |
cas1 | PG2014 | CRISPR-associated protein Cas1 | chromosome | CDS | 2104579 | 1017 | - | 0.429695 |
cas2-1 | PG1981 | CRISPR-associated protein Cas2 | chromosome | CDS | 2069305 | 291 | - | 0.474227 |
cas2-2 | PG2013 | CRISPR-associated protein Cas2 | chromosome | CDS | 2104316 | 264 | - | 0.371212 |
cas4 | PG2015 | CRISPR-associated protein Cas4 | chromosome | CDS | 2105592 | 513 | - | 0.436647 |
dnaA | PG0001 | chromosomal replication initiator protein DnaA | chromosome | CDS | 1 | 1422 | + | 0.508439 |
dnaB | PG1242 | replicative DNA helicase | chromosome | CDS | 1317575 | 1587 | + | 0.536232 |
dnaE | PG0035 | DNA polymerase III, alpha subunit | chromosome | CDS | 42688 | 3687 | - | 0.492813 |
dnaG | PG1814 | DNA primase | chromosome | CDS | 1908696 | 2022 | - | 0.488131 |
dnaN | PG1853 | DNA polymerase III, beta subunit | chromosome | CDS | 1952076 | 1134 | - | 0.499118 |
dnaX | PG1418 | DNA polymerase III, gamma and tau subunits | chromosome | CDS | 1503204 | 1809 | + | 0.505252 |
dprA | PG0295 | DNA processing protein DprA, putative | chromosome | CDS | 330266 | 1125 | - | 0.546667 |
gyrA | PG1386 | DNA gyrase, A subunit | chromosome | CDS | 1466459 | 2580 | - | 0.506589 |
gyrB | PG1702 | DNA gyrase, B subunit | chromosome | CDS | 1788036 | 1965 | - | 0.501781 |
hup-1 | PG0121 | DNA-binding protein HU | chromosome | CDS | 144608 | 267 | + | 0.441948 |
hup-2 | PG1258 | DNA-binding protein HU | chromosome | CDS | 1334674 | 279 | - | 0.426523 |
ligA | PG1253 | DNA ligase, NAD-dependent | chromosome | CDS | 1329687 | 2010 | - | 0.504478 |
mfd | PG1774 | transcription-repair coupling factor | chromosome | CDS | 1861269 | 3369 | - | 0.52152 |
mutL | PG0412 | DNA mismatch repair protein MutL | chromosome | CDS | 449674 | 1857 | - | 0.525579 |
mutS | PG0095 | DNA mismatch repair protein MutS | chromosome | CDS | 112178 | 2676 | - | 0.532511 |
mutY | PG1378 | A/G-specific adenine glycosylase | chromosome | CDS | 1457805 | 1224 | - | 0.486928 |
nth | PG1772 | endonuclease III | chromosome | CDS | 1859219 | 675 | + | 0.53037 |
ogt | PG0486 | methylated-DNA--protein-cysteineS-methyltransferase | chromosome | CDS | 525497 | 528 | - | 0.515152 |
polA | PG1794 | DNA polymerase type I | chromosome | CDS | 1886118 | 2781 | + | 0.522474 |
priA | PG2032 | primosomal protein N' | chromosome | CDS | 2130958 | 2514 | - | 0.526253 |
radC | PG0894 | DNA repair protein RadC | chromosome | CDS | 956168 | 684 | - | 0.530702 |
recA | PG0881 | recA protein | chromosome | CDS | 943203 | 1023 | + | 0.507331 |
recF | PG0398 | recF protein | chromosome | CDS | 434706 | 1095 | - | 0.484018 |
recG | PG0348 | ATP-dependent DNA helicase RecG | chromosome | CDS | 382485 | 2097 | + | 0.541249 |
recJ | PG0054 | single-stranded-DNA-specific exonuclease RecJ | chromosome | CDS | 65205 | 1755 | + | 0.497436 |
recN | PG1849 | DNA repair protein RecN | chromosome | CDS | 1947469 | 1656 | - | 0.505435 |
recQ-1 | PG0416 | ATP-dependent DNA helicase RecQ | chromosome | CDS | 455223 | 2178 | - | 0.46786 |
recQ-2 | PG1831 | ATP-dependent DNA helicase RecQ | chromosome | CDS | 1923545 | 1968 | - | 0.53811 |
recR | PG1255 | recombination protein RecR | chromosome | CDS | 1332218 | 624 | - | 0.477564 |
rnhB | PG0736 | ribonuclease HII | chromosome | CDS | 785748 | 606 | + | 0.539604 |
ruvA | PG0811 | Holliday junction DNA helicase RuvA | chromosome | CDS | 872691 | 609 | - | 0.502463 |
ruvB | PG0488 | Holliday junction DNA helicase RuvB | chromosome | CDS | 528309 | 1032 | + | 0.55814 |
ruvC | PG1324 | crossover junction endodeoxyribonuclease RuvC | chromosome | CDS | 1402952 | 570 | - | 0.515789 |
ssb | PG0271 | single-stranded binding protein | chromosome | CDS | 303982 | 471 | + | 0.498938 |
topA | PG0754 | DNA topoisomerase I | chromosome | CDS | 801083 | 2367 | + | 0.507816 |
topB-1 | PG0104 | DNA topoisomerase III | chromosome | CDS | 125481 | 2028 | + | 0.525148 |
topB-2 | PG1495 | DNA topoisomerase III | chromosome | CDS | 1571383 | 2094 | + | 0.553486 |
umuC | PG1338 | umuC protein | chromosome | CDS | 1418386 | 1299 | + | 0.501155 |
ung | PG0237 | uracil-DNA glycosylase | chromosome | CDS | 274918 | 669 | + | 0.511211 |
uvrA-1 | PG1036 | excinuclease ABC, A subunit | chromosome | CDS | 1098576 | 2904 | + | 0.466253 |
uvrA-2 | PG2210 | excinuclease ABC, A subunit | chromosome | CDS | 2321042 | 2859 | - | 0.543197 |
uvrB | PG0380 | excinuclease ABC, B subunit | chromosome | CDS | 409242 | 2037 | + | 0.551301 |
uvrC | PG1993 | excinuclease ABC, C subunit | chromosome | CDS | 2083461 | 1800 | + | 0.496667 |
xerD | PG1732 | integrase/recombinase XerD | chromosome | CDS | 1820311 | 927 | + | 0.500539 |
xseA | PG1128 | exodeoxyribonuclease VII, large subunit | chromosome | CDS | 1203877 | 1383 | + | 0.535792 |
xth | PG0269 | exodeoxyribonuclease III | chromosome | CDS | 302168 | 765 | + | 0.467974 |