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2024-05-19 10:11:33

Gene list

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COG category: Replication, recombination and repair
Genomic element: chromosome

Number of genes found: 182

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Lactococcus lactis subsp. lactis Il1403, IL1403
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
L0466 transposase of IS1077Achromosome CDS53161 684 + 0.343567
comEA competence protein ComEAchromosome CDS1832787 648 - 0.33179
comFA competence protein ComFAchromosome CDS1096987 1323 - 0.335601
cshA chromosome segregation helicasechromosome CDS99269 1260 - 0.379365
dinG ATP-dependent helicase DinGchromosome CDS1898543 2385 - 0.348428
dinP DNA-damage-inducible protein Pchromosome CDS2104597 1092 - 0.349817
dnaA replication initiation protein DnaAchromosome CDS358 1368 + 0.374269
dnaB replication protein DnaBchromosome CDS757902 1176 + 0.354592
dnaC replicative DNA helicasechromosome CDS753514 1368 + 0.390351
dnaD DNA replication protein DnaDchromosome CDS1083162 669 + 0.35725
dnaE DNA polymerase III, alpha chain 2 (EC 2.7.7.7)chromosome CDS494602 3183 + 0.355639
dnaG DNA primase (EC 2.7.7.-)chromosome CDS544010 1914 + 0.338558
dnaH DNA polymerase III, subunits beta and tau (EC 2.7.7.7)chromosome CDS2278073 1659 - 0.3695
dnaI primosomal protein DnaIchromosome CDS759077 882 + 0.371882
dnaN DNA polymerase III, beta chain (EC 2.7.7.7)chromosome CDS1882 1143 + 0.319335
dnaQ DNA polymerase III, epsilon chainchromosome CDS1009341 834 + 0.330935
exoA exodeoxyribonuclease Achromosome CDS798032 1005 - 0.379104
gyrA DNA gyrase subunit A (EC 5.99.1.3)chromosome CDS1121779 2490 + 0.4
gyrB DNA gyrase subunit B (EC 5.99.1.3)chromosome CDS927935 1956 + 0.383436
hexA mismatch repair protein MutSchromosome CDS2293165 2523 - 0.37614
hexB DNA mismatch repair protein MutLchromosome CDS2290256 2088 - 0.36159
holB DNA polymerase III, delta' subunit (EC 2.7.7.7)chromosome CDS404636 861 + 0.327526
hslA HU like DNA-binding proteinchromosome CDS502338 276 + 0.394928
hslB HU-like DNA-binding proteinchromosome CDS902908 348 + 0.367816
ligA DNA ligase (EC 6.5.1.2)chromosome CDS424521 1965 + 0.389822
mfd transcription-repair coupling factorchromosome CDS17165 3486 + 0.355422
mutM formamidopyrimidine-DNA glycosylase (EC 3.2.2.23)chromosome CDS357841 819 + 0.360195
mutS DNA mismatch repair protein MutSchromosome CDS1691732 2331 - 0.353496
mutX mutator protein MutT (EC 3.6.1.-)chromosome CDS1136089 468 + 0.33547
mutY A/G-specific adenine glycosylase (EC 3.2.2.1)chromosome CDS858637 1164 + 0.353093
nth endonuclease III (EC 4.2.99.18)chromosome CDS1083852 657 + 0.383562
ogt 6-O-methylguanine-DNA methyltransferasechromosome CDS518499 510 + 0.335294
parC topoisomerase IV subunit B (EC 5.99.1.-)chromosome CDS1010895 2475 + 0.381414
parE topoisomerase IV subunit B (EC 5.99.1.-)chromosome CDS1006671 1935 + 0.381395
pcrA ATP-dependent helicase PcrA (EC 3.6.1.-)chromosome CDS1133793 2277 + 0.368028
pi101 prophage pi1 protein 01, integrasechromosome CDS447236 1134 - 0.313051
pi111 prophage pi1 protein 11, recombinasechromosome CDS453010 807 + 0.363073
pi114 prophage pi1 protein 14, DNA replication proteinchromosome CDS455615 876 + 0.356164
pi126 prophage pi1 protein 26chromosome CDS460956 294 + 0.312925
pi133 prophage pi1 protein 33, terminase small subunitchromosome CDS464045 453 + 0.335541
pi201 prophage pi2 protein 01, integrasechromosome CDS1036642 1125 - 0.331556
pi212 prophage pi2 protein 12, single strand binding proteinchromosome CDS1043169 453 + 0.388521
pi215 prophage pi2 protein 15chromosome CDS1045250 390 + 0.346154
pi248 prophage pi2 protein 48chromosome CDS1069662 339 + 0.336283
pi327 prophage pi3 protein 27, terminase small subunitchromosome CDS1439215 474 - 0.348101
pi346 prophage pi3 protein 46, DNA replication proteinchromosome CDS1447798 885 - 0.342373
pi348 prophage pi3 protein 48, single strand binding helix destabilising proteinchromosome CDS1449659 426 - 0.35446
pi360 prophage pi3 protein 60, integrasechromosome CDS1455870 1080 + 0.335185
polA DNA polymerase I (EC 2.7.7.7)chromosome CDS2210775 2634 - 0.354594
polC DNA polymerase III, alpha chain (EC 2.7.7.7)chromosome CDS2189151 4977 - 0.380551
priA primosomal protein N'chromosome CDS1963387 2340 - 0.362393
ps103 prophage ps1 protein 03, terminase subunitchromosome CDS36271 444 - 0.405405
ps122 prophage ps1 protein 22chromosome CDS47988 306 + 0.336601
ps123 prophage ps1 protein 23, integrasechromosome CDS48543 1185 + 0.367089
ps201 prophage ps2 protein 01, integrasechromosome CDS502723 1149 - 0.322889
ps218 prophage ps2 protein 18chromosome CDS511569 609 + 0.300493
ps316 prophage ps3 protein 16, integrasechromosome CDS2024436 1200 + 0.365
radC DNA repair protein RadCchromosome CDS1035763 681 + 0.349486
recA RecA proteinchromosome CDS358813 1164 + 0.396907
recD exodeoxyribonuclease V alpha chain (EC 3.1.11.5)chromosome CDS1797064 2505 - 0.374451
recF RecF proteinchromosome CDS2051081 1077 + 0.330548
recG ATP-dependent DNA helicase RecG (EC 3.6.1.-)chromosome CDS2329913 2001 - 0.378811
recM RecM proteinchromosome CDS340013 597 + 0.38861
recN DNA repair protein RecNchromosome CDS883095 1668 + 0.345923
recQ ATP-dependent DNA helicase RecQ (EC 3.6.1.-)chromosome CDS1873622 1779 + 0.371557
rexA subunit A of ATP-dependent exonucleasechromosome CDS6422 3612 + 0.323367
rexB subunit B of ATP-dependent exonucleasechromosome CDS3130 3300 + 0.319091
rheA ATP-dependent RNA helicasechromosome CDS353033 1644 + 0.409367
rheB ATP-dependent RNA helicasechromosome CDS415804 1341 + 0.358688
rnhA ribonuclease HII (EC 3.1.26.4)chromosome CDS2349438 879 + 0.343572
rnhB ribonuclease HII (EC 3.1.26.4)chromosome CDS1328294 777 - 0.36036
ruvA DNA helicase RuvAchromosome CDS2289550 594 - 0.383838
ruvB DNA helicase RuvBchromosome CDS2288423 975 - 0.393846
sbcC ATP-dependent dsDNA exonucleasechromosome CDS1352843 3141 - 0.308182
sbcD exonuclease SbcDchromosome CDS1355986 1173 - 0.328218
snf SWI/SNF family helicasechromosome CDS2120587 3105 - 0.340097
ssbA single-strand binding proteinchromosome CDS398016 390 + 0.34359
ssbB single-strand binding proteinchromosome CDS2274181 501 - 0.42515
tag DNA-3-methyladenine glycosidase I (EC 3.2.2.20)chromosome CDS1136602 573 + 0.310646
topA DNA topoisomerase I (EC 5.99.1.2)chromosome CDS1254565 2133 + 0.369433
tra1077B transposase of IS1077Bchromosome CDS139171 819 + 0.345543
tra1077C transposase of IS1077Cchromosome CDS374892 819 + 0.347985
tra1077D transposase of IS1077Dchromosome CDS627782 684 - 0.343567
tra1077E transposase of IS1077Echromosome CDS837114 819 - 0.345543
tra1077F transposase of IS1077Fchromosome CDS2155831 819 - 0.346764
tra1077G transposase of IS1077Gchromosome CDS2216165 819 - 0.346764
tra904A transposase of IS904Achromosome CDS53900 762 - 0.388451
tra904B transposase of IS904Bchromosome CDS137799 762 + 0.388451
tra904C transposase of IS904Cchromosome CDS140045 762 - 0.388451
tra904D transposase of IS904Dchromosome CDS373520 762 + 0.388451
tra904E transposase of IS904Echromosome CDS626561 762 - 0.388451
tra904F transposase of IS904Fchromosome CDS835893 762 - 0.388451
tra904G transposase of IS904Gchromosome CDS838947 762 + 0.388451
tra904H transposase of IS904Hchromosome CDS2154611 762 - 0.388451
tra904I transposase of IS904Ichromosome CDS2214945 762 - 0.388451
tra905 transposase of IS905chromosome CDS1224836 1176 + 0.390306
tra981A transposase of IS981Achromosome CDS91052 840 - 0.361905
tra981C transposase of IS981Cchromosome CDS650157 840 - 0.353571
tra981D transposase of IS981Dchromosome CDS728130 840 - 0.361905
tra981E transposase of IS981Echromosome CDS1216209 840 - 0.363095
tra981G transposase of IS981Gchromosome CDS1275416 840 - 0.359524
tra981H transposase of IS981Hchromosome CDS1585849 840 - 0.361905
tra981I transposase of IS981Ichromosome CDS1747150 840 - 0.361905
tra981J transposase of IS981Jchromosome CDS2102725 840 - 0.361905
tra983A transposase of IS983Achromosome CDS681575 948 + 0.448312
tra983B transposase of IS983Bchromosome CDS706695 948 + 0.448312
tra983C transposase of IS983Cchromosome CDS957642 948 + 0.448312
tra983D transposase of IS983Dchromosome CDS1337988 948 + 0.448312
tra983E transposase of IS983Echromosome CDS1395697 948 + 0.448312
tra983F transposase of IS983Fchromosome CDS1555588 948 + 0.448312
tra983G transposase of IS983Gchromosome CDS1754225 948 + 0.448312
tra983H transposase of IS983Hchromosome CDS1953555 948 - 0.448312
tra983I transposase of IS983Ichromosome CDS1977927 948 - 0.448312
tra983J transposase of IS983Jchromosome CDS2011426 948 + 0.448312
tra983K transposase of IS983Kchromosome CDS2016951 948 + 0.448312
tra983L transposase of IS983Lchromosome CDS2083063 948 + 0.447257
tra983M transposase of IS983Mchromosome CDS2147273 948 - 0.447257
tra983N transposase of IS983Nchromosome CDS2202924 948 - 0.448312
tra983O transposase of IS983Ochromosome CDS2267576 948 - 0.447257
umuC SOS responce UmuC proteinchromosome CDS580086 1467 - 0.357192
ung uracil-DNA glycosilase (EC 3.2.2.-)chromosome CDS232719 660 + 0.40303
uvrA excinuclease ABC subunit Achromosome CDS1885624 2823 - 0.379384
uvrB excinuclease ABC subunit Bchromosome CDS556127 2079 + 0.390091
uvrC excinuclease ABC subunit Cchromosome CDS856467 2007 + 0.347783
xerD integrase-recombinasechromosome CDS634512 939 + 0.329073
xseA exonuclease VII large subunit (EC 3.1.11.6)chromosome CDS877881 1254 + 0.382775
xseB exonuclease VII small subunit (EC 3.1.11.6)chromosome CDS879134 240 + 0.325
yafD HYPOTHETICAL PROTEINchromosome CDS57858 756 + 0.34127
yafG HYPOTHETICAL PROTEINchromosome CDS52656 372 + 0.344086
yafI HYPOTHETICAL PROTEINchromosome CDS54757 291 - 0.378007
yajE transposasechromosome CDS91903 261 - 0.367816
yajG transposasechromosome CDS93882 261 - 0.363985
ybdK HYPOTHETICAL PROTEINchromosome CDS137413 291 + 0.381443
ybdL HYPOTHETICAL PROTEINchromosome CDS138617 558 + 0.353047
ybeB HYPOTHETICAL PROTEINchromosome CDS141835 360 + 0.388889
ybeG HYPOTHETICAL PROTEINchromosome CDS140902 291 - 0.381443
yccE UNKNOWN PROTEINchromosome CDS224321 360 + 0.352778
ydhD HYPOTHETICAL PROTEINchromosome CDS373134 291 + 0.37457
ydhE HYPOTHETICAL PROTEINchromosome CDS374338 558 + 0.353047
yffD diadenosine 5',5'''-P1,P4-tetraphosphate hydrolasechromosome CDS555661 456 + 0.328947
ygcD HYPOTHETICAL PROTEINchromosome CDS627418 291 - 0.378007
ygcE HYPOTHETICAL PROTEINchromosome CDS628597 558 - 0.358423
ygeD UNKNOWN PROTEINchromosome CDS648976 771 + 0.287938
ygfF transposasechromosome CDS651008 168 - 0.345238
ygiI conserved hypothetical proteinchromosome CDS687395 774 + 0.368217
ygiK HYPOTHETICAL PROTEINchromosome CDS688717 621 + 0.359098
yhcJ transposasechromosome CDS728981 261 - 0.367816
yidF HYPOTHETICAL PROTEINchromosome CDS836750 291 - 0.381443
yidG HYPOTHETICAL PROTEINchromosome CDS837929 558 - 0.353047
yidH HYPOTHETICAL PROTEINchromosome CDS838561 291 + 0.381443
ykjE conserved hypothetical proteinchromosome CDS1094156 480 + 0.372917
ylgG HYPOTHETICAL PROTEINchromosome CDS1168309 498 + 0.329317
ymbI transposasechromosome CDS1217060 261 - 0.367816
ymcD transposasechromosome CDS1221637 261 + 0.367816
ymfD integrase-recombinasechromosome CDS1258157 1071 - 0.335201
ymhB transposasechromosome CDS1276267 261 - 0.375479
ynbA UNKNOWN PROTEINchromosome CDS1310002 741 - 0.309042
yniH UNKNOWN PROTEINchromosome CDS1386855 1170 + 0.394872
yoiA HYPOTHETICAL PROTEINchromosome CDS1479930 3273 - 0.300947
ypiI transposasechromosome CDS1586700 261 - 0.367816
yqgC conserved hypothetical proteinchromosome CDS1665985 456 - 0.357456
yqjE HYPOTHETICAL PROTEINchromosome CDS1700514 1155 - 0.365368
yraC HYPOTHETICAL PROTEINchromosome CDS1702742 1005 - 0.321393
yrdA transposasechromosome CDS1748001 261 - 0.367816
yscB UNKNOWN PROTEINchromosome CDS1821845 642 - 0.32866
ysgB HYPOTHETICAL PROTEINchromosome CDS1868336 306 - 0.379085
ysiD HYPOTHETICAL PROTEINchromosome CDS1884712 582 - 0.353952
ysiE UNKNOWN PROTEINchromosome CDS1888525 639 - 0.331768
ysiG conserved hypothetical proteinchromosome CDS1889753 315 + 0.31746
ytfB HYPOTHETICAL PROTEINchromosome CDS1950399 585 - 0.336752
ytgC HYPOTHETICAL PROTEINchromosome CDS1962420 522 - 0.367816
ytjF UNKNOWN PROTEINchromosome CDS1997806 561 - 0.320856
yuiI transposasechromosome CDS2103576 261 - 0.367816
yujA HYPOTHETICAL PROTEINchromosome CDS2091305 939 - 0.346113
yvfC HYPOTHETICAL PROTEINchromosome CDS2156646 558 - 0.353047
yvfD HYPOTHETICAL PROTEINchromosome CDS2155468 291 - 0.381443
yvjF HYPOTHETICAL PROTEINchromosome CDS2215802 291 - 0.381443
ywaC UNKNOWN PROTEINchromosome CDS2201690 456 - 0.326754
ywbC HYPOTHETICAL PROTEINchromosome CDS2216980 558 - 0.353047
ywdG conserved hypothetical proteinchromosome CDS2239050 567 - 0.356261
ywjG UNKNOWN PROTEINchromosome CDS2299091 321 - 0.398754
yxbC HYPOTHETICAL PROTEINchromosome CDS2316468 441 + 0.367347