Gene list
Applied filters:
COG category: Replication, recombination and repair
Genomic element: chromosome
Number of genes found: 130
Show UniProt / TrEMBL protein name | View in Fasta format (DNA) | View in Fasta format (Protein) | ||||
Lactobacillus acidophilus NCFM, NCFM | ||||||||
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Name | Locus tag | Product / Description | Genomic element | Type | Begin | Length | Strand | GC-content |
NA | LBA1122 | DNA topoisomerase IV subunitB | chromosome | CDS | 1097656 | 1947 | + | 0.370313 |
NA | LBA0614 | transposase | chromosome | CDS | 600548 | 1383 | - | 0.366594 |
NA | LBA0955 | DNA polymerase III alpha-chain | chromosome | CDS | 929352 | 3108 | + | 0.333977 |
NA | LBA1077 | chromosome segregation helicase | chromosome | CDS | 1056909 | 1290 | + | 0.358915 |
NA | LBA0267 | ATP-dependent RNA helicase-like protein | chromosome | CDS | 257801 | 1488 | + | 0.384409 |
NA | LBA1118 | hypothetical protein | chromosome | CDS | 1094260 | 225 | - | 0.297778 |
NA | LBA1094 | putative ATPase | chromosome | CDS | 1076310 | 2061 | + | 0.291606 |
NA | LBA0740 | putative modification methylase | chromosome | CDS | 726238 | 1002 | + | 0.322355 |
NA | LBA0826 | hypothetical protein | chromosome | CDS | 808441 | 1680 | + | 0.27381 |
NA | LBA1569 | putative transposase, IS605-tnpb | chromosome | CDS | 1562841 | 606 | + | 0.369637 |
NA | LBA0706 | DNA polymerase III alpha chain | chromosome | CDS | 700124 | 534 | - | 0.344569 |
NA | LBA0835 | hypothetical protein | chromosome | CDS | 817676 | 552 | + | 0.307971 |
NA | LBA0414 | DNA-damage-inducible protein | chromosome | CDS | 389494 | 1239 | + | 0.34544 |
NA | LBA1721 | transposase | chromosome | CDS | 1756652 | 360 | - | 0.372222 |
NA | LBA0383 | DNA polymerase III, delta subunit | chromosome | CDS | 357050 | 858 | + | 0.325175 |
NA | LBA0255 | S-methyltransferase | chromosome | CDS | 247728 | 462 | + | 0.404762 |
NA | LBA0840 | putative DNA polymerase III, delta subunit | chromosome | CDS | 822738 | 990 | + | 0.284848 |
NA | LBA1722 | transposase | chromosome | CDS | 1756974 | 741 | - | 0.346829 |
NA | LBA0893 | integrase | chromosome | CDS | 870713 | 951 | - | 0.3449 |
NA | LBA0127 | transposase | chromosome | CDS | 121538 | 1242 | - | 0.36715 |
NA | LBA0053 | hypothetical protein | chromosome | CDS | 48869 | 219 | - | 0.310502 |
NA | LBA1907 | transposase | chromosome | CDS | 1916654 | 1509 | + | 0.388999 |
NA | LBA0784 | chromosomal segregation helicase | chromosome | CDS | 767252 | 1320 | - | 0.37803 |
NA | LBA0819 | putative ADP-ribose pyrophosphatase | chromosome | CDS | 801415 | 570 | + | 0.354386 |
NA | LBA0155 | DNA-3-methyladenine glycosidase | chromosome | CDS | 146691 | 573 | - | 0.356021 |
NA | LBA0333 | hypothetical protein | chromosome | CDS | 317178 | 372 | + | 0.290323 |
NA | LBA0549 | putative site-specific recombinase | chromosome | CDS | 536763 | 930 | - | 0.396774 |
NA | LBA0442 | phage related helicase | chromosome | CDS | 420860 | 2595 | + | 0.304432 |
NA | LBA1533 | transposase | chromosome | CDS | 1526307 | 711 | - | 0.337553 |
NA | LBA1160 | endonuclease III | chromosome | CDS | 1137845 | 630 | - | 0.320635 |
NA | LBA1155 | hypothetical protein | chromosome | CDS | 1131971 | 1125 | - | 0.344889 |
NA | LBA0116 | putative methyltransferase | chromosome | CDS | 112312 | 171 | - | 0.327485 |
NA | LBA1197 | DNA primase | chromosome | CDS | 1172137 | 1851 | - | 0.340897 |
NA | LBA1123 | DNA topoisomerase IV subunit C | chromosome | CDS | 1099631 | 2451 | + | 0.331293 |
NA | LBA0077 | transposase | chromosome | CDS | 77542 | 1707 | - | 0.385472 |
NA | LBA0670 | competence protein | chromosome | CDS | 656436 | 1284 | + | 0.318536 |
NA | LBA0871 | DNA alkylation repair enzyme | chromosome | CDS | 851519 | 477 | + | 0.33543 |
NA | LBA1954 | transposase | chromosome | CDS | 1965076 | 1026 | + | 0.358674 |
NA | LBA1723 | transposase | chromosome | CDS | 1757984 | 1227 | + | 0.361043 |
NA | LBA0477 | putative DNA methyltransferase | chromosome | CDS | 470105 | 870 | + | 0.265517 |
NA | LBA1002 | excinuclease subunit A | chromosome | CDS | 978446 | 2535 | + | 0.351085 |
NA | LBA1261 | DNA polymerase III alpha chain | chromosome | CDS | 1237627 | 4314 | - | 0.3535 |
NA | LBA0419 | hypothetical protein | chromosome | CDS | 396304 | 429 | + | 0.368298 |
NA | LBA0825 | exodeoxyribonuclease V alpha chain | chromosome | CDS | 806024 | 2355 | + | 0.326539 |
NA | LBA1591 | phosphoesterase | chromosome | CDS | 1584246 | 1212 | - | 0.325908 |
NA | LBA0478 | methylase | chromosome | CDS | 471076 | 684 | + | 0.334795 |
NA | LBA0548 | putative site-specific recombinase | chromosome | CDS | 536237 | 534 | - | 0.397004 |
NA | LBA1648 | DNA polymerase III | chromosome | CDS | 1668880 | 957 | - | 0.349007 |
NA | LBA0029 | putative integrase | chromosome | CDS | 25928 | 1236 | + | 0.309871 |
NA | LBA1420 | predicted transposase | chromosome | CDS | 1408346 | 1164 | + | 0.412371 |
NA | LBA0980 | DNA processing protein chainA | chromosome | CDS | 953794 | 858 | + | 0.317016 |
NA | LBA0617 | ATP-dependent RNA helicase, DEAD-DEAH box | chromosome | CDS | 604098 | 1239 | + | 0.332526 |
NA | LBA0703 | uracil-DNA glycosylase | chromosome | CDS | 697871 | 699 | + | 0.350501 |
NA | LBA0484 | integrase | chromosome | CDS | 476393 | 1203 | + | 0.318371 |
NA | LBA0113 | putative 3-methyladenine DNA glycosylase | chromosome | CDS | 110225 | 633 | - | 0.402844 |
NA | LBA0979 | Ribonuclease HII | chromosome | CDS | 952980 | 753 | + | 0.338645 |
NA | LBA1570 | transposase | chromosome | CDS | 1563456 | 543 | + | 0.348066 |
NA | LBA1881 | transposase | chromosome | CDS | 1894068 | 894 | + | 0.38255 |
NA | LBA0058 | putative phage DEAD box family helicase | chromosome | CDS | 54086 | 2835 | + | 0.322751 |
NA | LBA1145 | phage integrase-recombinase | chromosome | CDS | 1118476 | 1029 | + | 0.329446 |
NA | LBA0008 | single-stranded DNA-binding protein | chromosome | CDS | 9275 | 519 | + | 0.375723 |
NA | LBA0475 | restriction endonuclease | chromosome | CDS | 463844 | 4506 | + | 0.320684 |
NA | LBA0764 | integrase | chromosome | CDS | 749261 | 1071 | + | 0.328665 |
NA | LBA1565 | putative DNA-damage-inducible protein J | chromosome | CDS | 1558416 | 309 | - | 0.352751 |
NA | LBA0416 | RNA helicase | chromosome | CDS | 391744 | 1362 | + | 0.354626 |
NA | LBA1475 | transposase | chromosome | CDS | 1461095 | 1242 | + | 0.36876 |
NA | LBA0838 | competence protein | chromosome | CDS | 819801 | 684 | + | 0.333333 |
NA | LBA0376 | DNA polymerase III (DNA directed ) gamma-tau | chromosome | CDS | 351479 | 1791 | + | 0.353992 |
NA | LBA0443 | hypothetical protein | chromosome | CDS | 423467 | 285 | + | 0.266667 |
NA | LBA1464 | transposase | chromosome | CDS | 1447281 | 1158 | - | 0.357513 |
NA | LBA0970 | DNA-binding protein II HB | chromosome | CDS | 944734 | 276 | + | 0.413043 |
NA | LBA1487 | transposase, is605-tnpb | chromosome | CDS | 1475253 | 1158 | - | 0.348877 |
NA | LBA0870 | DNA repair | chromosome | CDS | 851303 | 177 | + | 0.299435 |
NA | LBA0867 | hypothetical protein | chromosome | CDS | 849283 | 804 | + | 0.269901 |
NA | LBA1299 | transposase | chromosome | CDS | 1278333 | 1383 | + | 0.366594 |
NA | LBA0214 | hypothetical protein | chromosome | CDS | 211455 | 768 | + | 0.354167 |
NA | LBA0545 | hypothetical protein | chromosome | CDS | 533872 | 588 | + | 0.389456 |
NA | LBA0981 | DNA topoisomerase I | chromosome | CDS | 954712 | 2118 | + | 0.360718 |
NA | LBA0231 | hypothetical protein | chromosome | CDS | 228340 | 405 | + | 0.333333 |
NA | LBA1868 | transposase | chromosome | CDS | 1877213 | 1383 | + | 0.367317 |
NA | LBA0215 | putative primase like | chromosome | CDS | 212209 | 588 | + | 0.362245 |
NA | LBA1282 | DNA polymerase | chromosome | CDS | 1260798 | 660 | - | 0.333333 |
NA | LBA0547 | putative site-specific recombinase | chromosome | CDS | 535203 | 1017 | - | 0.417896 |
NA | LBA0758 | prophage DNA packaging protein NU1 | chromosome | CDS | 747080 | 225 | - | 0.431111 |
NA | LBA0325 | integrase | chromosome | CDS | 308676 | 1053 | - | 0.316239 |
addA | LBA1165 | ATP-dependent exonuclease subunit A | chromosome | CDS | 1143864 | 3624 | - | 0.306291 |
addB | LBA1166 | ATP-dependent exonuclease subunit B | chromosome | CDS | 1147490 | 3483 | - | 0.300316 |
dinG | LBA1164 | ATP-dependent DNA helicase | chromosome | CDS | 1141057 | 2784 | - | 0.322917 |
dnaA | LBA0001 | chromosomal replication initiator protein | chromosome | CDS | 31 | 1368 | + | 0.355994 |
dnaB | LBA1545 | chromosome replication initiation | chromosome | CDS | 1534927 | 1341 | - | 0.342282 |
dnaB | LBA0013 | replicative DNA helicase | chromosome | CDS | 12752 | 1395 | + | 0.383513 |
dnaD | LBA1161 | initiation of chromosome replication protein | chromosome | CDS | 1138476 | 645 | - | 0.296124 |
dnaI | LBA1544 | primosome component (helicase loader) | chromosome | CDS | 1534009 | 909 | - | 0.352035 |
dnaN | LBA0002 | DNA polymerase III, beta chain | chromosome | CDS | 1576 | 1131 | + | 0.334218 |
dnlJ | LBA0529 | DNA ligase | chromosome | CDS | 517628 | 2007 | + | 0.374689 |
exoA | LBA1699 | exodeoxyribonuclease | chromosome | CDS | 1721387 | 762 | - | 0.35958 |
exoA | LBA0056 | exodeoxyribonuclease A | chromosome | CDS | 51696 | 828 | + | 0.355072 |
gyrA | LBA0006 | DNA gyrase subunit A | chromosome | CDS | 6258 | 2475 | + | 0.385455 |
gyrB | LBA0005 | DNA gyrase subunit B | chromosome | CDS | 4283 | 1965 | + | 0.390331 |
hexA | LBA0408 | DNA mismatch repair | chromosome | CDS | 381484 | 2571 | + | 0.357837 |
mutL | LBA0409 | DNA mismatch repair protein | chromosome | CDS | 384057 | 1896 | + | 0.333333 |
mutM | LBA1549 | formamidopyrimidine-DNA glycosylase Fpg | chromosome | CDS | 1537339 | 831 | - | 0.362214 |
mutS | LBA0421 | mismatch repair protein | chromosome | CDS | 397104 | 2358 | + | 0.351993 |
mutT | LBA1193 | putative mutator protein | chromosome | CDS | 1169865 | 441 | + | 0.319728 |
mutT | LBA0465 | putative nudix family protein | chromosome | CDS | 453002 | 411 | + | 0.343066 |
mutT | LBA0441 | putative mutator protein | chromosome | CDS | 420438 | 423 | + | 0.364066 |
pcrA | LBA0528 | ATP-dependent helicase | chromosome | CDS | 515355 | 2241 | + | 0.367693 |
polA | LBA1550 | DNA polymerase I | chromosome | CDS | 1538178 | 2661 | - | 0.363397 |
priA | LBA1323 | primosomal replication factor | chromosome | CDS | 1301262 | 2400 | - | 0.334167 |
radC | LBA0797 | DNA repair protein | chromosome | CDS | 780874 | 624 | + | 0.338141 |
recA | LBA0666 | recombination protein | chromosome | CDS | 651595 | 1092 | + | 0.39652 |
recF | LBA0004 | DNA repair and genetic recombination protein | chromosome | CDS | 3155 | 1128 | + | 0.348404 |
recG | LBA1309 | ATP-dependent DNA helicase | chromosome | CDS | 1289072 | 2037 | - | 0.340206 |
recJ | LBA1243 | single-stranded-DNA-specific exonuclease | chromosome | CDS | 1218486 | 2274 | - | 0.330255 |
recM | LBA0379 | recombinational DNA repair protein | chromosome | CDS | 355138 | 600 | + | 0.351667 |
recN | LBA1327 | DNA repair protein | chromosome | CDS | 1305094 | 1683 | - | 0.346999 |
recO | LBA1200 | DNA repair protein | chromosome | CDS | 1177242 | 753 | - | 0.325365 |
recQ | LBA1000 | ATP-dependent DNA helicase | chromosome | CDS | 976064 | 1773 | + | 0.329949 |
ruvA | LBA0410 | helicase Holliday junction | chromosome | CDS | 385952 | 588 | + | 0.362245 |
ruvB | LBA0411 | helicase Holliday junction | chromosome | CDS | 386551 | 1050 | + | 0.387619 |
tnpB | LBA0377 | transposase | chromosome | CDS | 353447 | 1158 | + | 0.355786 |
trcF | LBA0273 | transcriptional repair coupling factor | chromosome | CDS | 263464 | 3498 | + | 0.341338 |
uvrA | LBA0689 | excinuclease subunit A | chromosome | CDS | 680920 | 2841 | + | 0.357269 |
uvrB | LBA0688 | excinuclease ABC (subunit B) | chromosome | CDS | 678882 | 2052 | + | 0.366959 |
uvrC | LBA0946 | excinuclease ABC subunit C | chromosome | CDS | 919926 | 1803 | + | 0.332224 |
xerC | LBA0983 | integrase-recombinase | chromosome | CDS | 958172 | 909 | + | 0.330033 |
xerD | LBA0991 | putative integrase-recombinase | chromosome | CDS | 965006 | 813 | - | 0.303813 |
xerD | LBA0959 | integrase-recombinase | chromosome | CDS | 936390 | 906 | + | 0.336645 |
xseA | LBA1331 | exodeoxyribonuclease VII (large subunit) EX7L | chromosome | CDS | 1308695 | 1368 | - | 0.350146 |
xseB | LBA1330 | exodeoxyribonuclease VII (small subunit) EX7S | chromosome | CDS | 1308472 | 243 | - | 0.312757 |