Gene list
Applied filters:
COG category: Replication, recombination and repair
Genomic element: chromosome I
Number of genes found: 196
Show UniProt / TrEMBL protein name | View in Fasta format (DNA) | View in Fasta format (Protein) | ||||
Vibrio vulnificus YJ016, YJ016 | ||||||||
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Name | Locus tag | Product / Description | Genomic element | Type | Begin | Length | Strand | GC-content |
VV0011 | chromosomal DNA replication initiator DnaA | chromosome I | CDS | 7450 | 1407 | + | 0.496802 | |
VV0012 | DNA polymerase III, beta chain | chromosome I | CDS | 8917 | 1101 | + | 0.506812 | |
VV0013 | Recombinational DNA repair ATPase | chromosome I | CDS | 10027 | 1080 | + | 0.464815 | |
VV0014 | DNA gyrase, subunit B | chromosome I | CDS | 11125 | 2418 | + | 0.492142 | |
VV0040 | ATP-dependent DNA helicase Rep | chromosome I | CDS | 46389 | 2019 | + | 0.490342 | |
VV0054 | conserved hypothetical protein | chromosome I | CDS | 64970 | 1335 | - | 0.510861 | |
VV0089 | site-specific recombinase XerC | chromosome I | CDS | 99962 | 969 | + | 0.529412 | |
VV0111 | N6-adenine-specific methylase | chromosome I | CDS | 119437 | 594 | - | 0.498316 | |
VV0130 | MutL protein | chromosome I | CDS | 136670 | 1407 | + | 0.390192 | |
VV0132 | conserved hypothetical protein | chromosome I | CDS | 140561 | 2178 | + | 0.378788 | |
VV0144 | conserved hypothetical protein | chromosome I | CDS | 154392 | 1383 | + | 0.396963 | |
VV0152 | transposase and inactivated derivative | chromosome I | CDS | 159838 | 390 | + | 0.405128 | |
VV0172 | transposase and inactivated derivative | chromosome I | CDS | 183740 | 456 | + | 0.414474 | |
VV0173 | transposase and inactivated derivative | chromosome I | CDS | 184257 | 534 | + | 0.460674 | |
VV0184 | Mg-dependent DNase | chromosome I | CDS | 193292 | 771 | - | 0.464332 | |
VV0186 | DNA polymerase I | chromosome I | CDS | 195994 | 2874 | + | 0.477383 | |
VV0192 | conserved hypothetical protein | chromosome I | CDS | 203029 | 489 | + | 0.466258 | |
VV0226 | MutT/nudix family protein | chromosome I | CDS | 236504 | 555 | - | 0.482883 | |
VV0239 | RecG-like helicase | chromosome I | CDS | 247209 | 2082 | - | 0.534582 | |
VV0263 | conserved hypothetical protein | chromosome I | CDS | 272561 | 1749 | + | 0.535735 | |
VV0277 | site-specific recombinase, phage integrase family | chromosome I | CDS | 287569 | 1305 | - | 0.498084 | |
VV0285 | DNA repair protein | chromosome I | CDS | 296776 | 675 | + | 0.477037 | |
VV0289 | formamidopyrimidine-DNA glycosylase | chromosome I | CDS | 298883 | 885 | + | 0.487006 | |
VV0297 | putative KDO kinase WavC | chromosome I | CDS | 305882 | 711 | + | 0.459916 | |
VV0331 | hypothetical protein | chromosome I | CDS | 340797 | 438 | - | 0.479452 | |
VV0351 | putative GDP-mannose mannosylhydrolase | chromosome I | CDS | 359606 | 483 | + | 0.364389 | |
VV0369 | transposase | chromosome I | CDS | 378217 | 1533 | + | 0.493803 | |
VV0370 | putative transposase subunit | chromosome I | CDS | 379667 | 834 | + | 0.485611 | |
VV0371 | predicted endonuclease | chromosome I | CDS | 381021 | 300 | + | 0.396667 | |
VV0516 | ribonuclease HI | chromosome I | CDS | 503675 | 438 | + | 0.456621 | |
VV0525 | DNA repair protein | chromosome I | CDS | 508471 | 474 | - | 0.495781 | |
VV0545 | putative transposase | chromosome I | CDS | 532848 | 231 | - | 0.454545 | |
VV0546 | putative transposase | chromosome I | CDS | 533252 | 888 | - | 0.441441 | |
VV0549 | conserved hypothetical protein | chromosome I | CDS | 534852 | 378 | + | 0.415344 | |
VV0558 | putative transposase A | chromosome I | CDS | 540196 | 276 | + | 0.402174 | |
VV0559 | putative transposase B | chromosome I | CDS | 540468 | 426 | + | 0.424883 | |
VV0560 | phage integrase | chromosome I | CDS | 540909 | 1230 | - | 0.418699 | |
VV0562 | DNA primase | chromosome I | CDS | 544499 | 1797 | - | 0.479132 | |
VV0584 | MutT/nudix family protein | chromosome I | CDS | 568170 | 648 | + | 0.46142 | |
VV0588 | topoisomerase IV, subunit B | chromosome I | CDS | 570938 | 1881 | + | 0.50505 | |
VV0589 | topoisomerase IV, subunit A | chromosome I | CDS | 572822 | 2286 | + | 0.496063 | |
VV0603 | predicted endonuclease | chromosome I | CDS | 586107 | 369 | - | 0.428184 | |
VV0622 | NTP pyrophosphohydrolase | chromosome I | CDS | 610155 | 402 | + | 0.445274 | |
VV0626 | hypothetical protein | chromosome I | CDS | 616450 | 420 | - | 0.414286 | |
VV0654 | endonuclease IV | chromosome I | CDS | 650641 | 882 | + | 0.456916 | |
VV0655 | uracil DNA glycosylase | chromosome I | CDS | 651800 | 705 | + | 0.465248 | |
VV0660 | DNA and RNA helicase | chromosome I | CDS | 656526 | 1326 | - | 0.499246 | |
VV0665 | site-specific recombinase XerD | chromosome I | CDS | 660986 | 924 | + | 0.485931 | |
VV0667 | single-stranded DNA-specific exonuclease | chromosome I | CDS | 662773 | 1740 | + | 0.508046 | |
VV0674 | DNA mismatch repair protein | chromosome I | CDS | 671196 | 750 | - | 0.473333 | |
VV0675 | MutT/nudix family protein | chromosome I | CDS | 672498 | 519 | + | 0.441233 | |
VV0711 | transposase and inactivated derivative | chromosome I | CDS | 710041 | 1338 | - | 0.458894 | |
VV0722 | DNA recombination-dependent growth factor C | chromosome I | CDS | 725690 | 915 | - | 0.459016 | |
VV0773 | conserved hypothetical protein | chromosome I | CDS | 778708 | 231 | + | 0.445887 | |
VV0774 | exonuclease VII, large subunit | chromosome I | CDS | 778971 | 1386 | - | 0.480519 | |
VV0799 | hypothetical protein | chromosome I | CDS | 804352 | 678 | - | 0.376106 | |
VV0806 | ribonuclease HI | chromosome I | CDS | 810680 | 537 | + | 0.446927 | |
VV0809 | DNA repair protein | chromosome I | CDS | 812421 | 498 | - | 0.504016 | |
VV0817 | phage integrase | chromosome I | CDS | 821652 | 1251 | - | 0.452438 | |
VV0822 | DNA repair protein RecN | chromosome I | CDS | 825521 | 1140 | - | 0.457895 | |
VV0823 | DNA repair protein RecN | chromosome I | CDS | 826666 | 519 | - | 0.477842 | |
VV0870 | exonuclease VII small subunit | chromosome I | CDS | 874701 | 243 | - | 0.44856 | |
VV0883 | 5'-3' exonuclease | chromosome I | CDS | 883698 | 780 | - | 0.483333 | |
VV0909 | DNA polymerase III, delta subunit | chromosome I | CDS | 911298 | 1026 | - | 0.44347 | |
VV0982 | NAD-dependent DNA ligase | chromosome I | CDS | 980812 | 2010 | + | 0.485572 | |
VV1019 | SeqA protein | chromosome I | CDS | 1017007 | 534 | + | 0.426966 | |
VV1048 | Rad3-related DNA helicase | chromosome I | CDS | 1050972 | 1920 | + | 0.492188 | |
VV1107 | bacterial nucleoid DNA-binding protein | chromosome I | CDS | 1115115 | 294 | + | 0.459184 | |
VV1109 | DNA uptake protein | chromosome I | CDS | 1117577 | 303 | + | 0.382838 | |
VV1138 | predicted methylated DNA-protein cysteine methyltransferase | chromosome I | CDS | 1147521 | 309 | - | 0.440129 | |
VV1155 | topoisomerase IA | chromosome I | CDS | 1168119 | 1971 | + | 0.509386 | |
VV1182 | ribonuclease T | chromosome I | CDS | 1198821 | 654 | - | 0.48318 | |
VV1186 | EndoIII-related endonuclease | chromosome I | CDS | 1201556 | 642 | - | 0.475078 | |
VV1193 | excinuclease ABC subunit B | chromosome I | CDS | 1209387 | 2043 | + | 0.474792 | |
VV1232 | DNA polymerase elongation subunit | chromosome I | CDS | 1243722 | 2370 | - | 0.47384 | |
VV1234 | nuclease subunit of the excinuclease complex | chromosome I | CDS | 1247094 | 1833 | + | 0.463721 | |
VV1247 | DNA gyrase, subunit A | chromosome I | CDS | 1264566 | 2703 | + | 0.487976 | |
VV1281 | DNA polymerase III, delta prime subunit | chromosome I | CDS | 1300879 | 957 | + | 0.456635 | |
VV1282 | Mg-dependent DNase | chromosome I | CDS | 1301826 | 768 | + | 0.440104 | |
VV1294 | DNA polymerase III, alpha subunit | chromosome I | CDS | 1313481 | 3075 | - | 0.473171 | |
VV1295 | uncharacterized protein conserved in bacteria | chromosome I | CDS | 1316571 | 1404 | - | 0.460114 | |
VV1296 | conserved hypothetical protein | chromosome I | CDS | 1317971 | 684 | - | 0.476608 | |
VV1301 | bacterial nucleoid DNA-binding protein | chromosome I | CDS | 1323624 | 282 | + | 0.457447 | |
VV1315 | transposase and inactivated derivative | chromosome I | CDS | 1340362 | 1338 | - | 0.458146 | |
VV1317 | conserved hypothetical protein | chromosome I | CDS | 1342675 | 765 | - | 0.419608 | |
VV1324 | putative ATPase protein | chromosome I | CDS | 1351662 | 1350 | + | 0.49037 | |
VV1369 | hypothetical protein | chromosome I | CDS | 1392383 | 1386 | + | 0.453824 | |
VV1398 | 3-methyladenine DNA glycosylase | chromosome I | CDS | 1423051 | 570 | + | 0.468421 | |
VV1425 | DNA or RNA helicase | chromosome I | CDS | 1450705 | 1743 | - | 0.485944 | |
VV1465 | HrpA-like helicase | chromosome I | CDS | 1501416 | 2346 | + | 0.514919 | |
VV1469 | conserved hypothetical protein | chromosome I | CDS | 1506753 | 393 | - | 0.452926 | |
VV1472 | exonuclease I | chromosome I | CDS | 1508555 | 1422 | - | 0.484529 | |
VV1501 | Zn-finger domain associated with topoisomerase type I | chromosome I | CDS | 1534044 | 666 | + | 0.430931 | |
VV1575 | transposase and inactivated derivative | chromosome I | CDS | 1618577 | 1338 | - | 0.459641 | |
VV1634 | ATP-dependent DNA ligase | chromosome I | CDS | 1680173 | 843 | + | 0.487544 | |
VV1724 | conserved hypothetical protein | chromosome I | CDS | 1780349 | 345 | - | 0.423188 | |
VV1738 | iSSod13, transposase | chromosome I | CDS | 1791851 | 1041 | + | 0.445725 | |
VV1747 | transposase and inactivated derivative | chromosome I | CDS | 1798028 | 852 | - | 0.478873 | |
VV1748 | transposase and inactivated derivative | chromosome I | CDS | 1798876 | 309 | - | 0.508091 | |
VV1754 | NTP pyrophosphohydrolase | chromosome I | CDS | 1803496 | 408 | - | 0.42402 | |
VV1770 | hypothetical protein | chromosome I | CDS | 1815327 | 2274 | + | 0.332014 | |
VV1771 | retron-type reverse transcriptase | chromosome I | CDS | 1817712 | 1146 | + | 0.322862 | |
VV1777 | integrase | chromosome I | CDS | 1822239 | 1209 | - | 0.476427 | |
VV1786 | NTP pyrophosphohydrolase | chromosome I | CDS | 1828918 | 408 | - | 0.416667 | |
VV1788 | transposase and inactivated derivative | chromosome I | CDS | 1830490 | 852 | - | 0.478873 | |
VV1789 | transposase and inactivated derivative | chromosome I | CDS | 1831338 | 309 | - | 0.508091 | |
VV1824 | conserved hypothetical protein | chromosome I | CDS | 1850999 | 498 | - | 0.437751 | |
VV1832 | transposase and inactivated derivative | chromosome I | CDS | 1855453 | 852 | - | 0.478873 | |
VV1833 | transposase and inactivated derivative | chromosome I | CDS | 1856301 | 309 | - | 0.508091 | |
VV1839 | transposase and inactivated derivative | chromosome I | CDS | 1859037 | 309 | + | 0.508091 | |
VV1840 | transposase and inactivated derivative | chromosome I | CDS | 1859342 | 852 | + | 0.478873 | |
VV1842 | iSSod13, transposase | chromosome I | CDS | 1860447 | 1041 | - | 0.445725 | |
VV1868 | transposase and inactivated derivative | chromosome I | CDS | 1879234 | 852 | - | 0.478873 | |
VV1869 | transposase and inactivated derivative | chromosome I | CDS | 1880082 | 309 | - | 0.508091 | |
VV1920 | transposase and inactivated derivative | chromosome I | CDS | 1912991 | 1017 | + | 0.453294 | |
VV1921 | putative microtubule binding protein | chromosome I | CDS | 1914040 | 1395 | - | 0.405018 | |
VV1941 | super-integron integrase IntIA | chromosome I | CDS | 1929942 | 963 | + | 0.413292 | |
VV1957 | conserved hypothetical protein | chromosome I | CDS | 1949380 | 696 | + | 0.41954 | |
VV1966 | integration host factor, alpha subunit | chromosome I | CDS | 1957533 | 288 | - | 0.440972 | |
VV1995 | ATP-dependent helicase HrpA | chromosome I | CDS | 1991898 | 3837 | - | 0.488663 | |
VV2021 | conserved hypothetical protein | chromosome I | CDS | 2017408 | 531 | - | 0.450094 | |
VV2028 | conserved hypothetical protein | chromosome I | CDS | 2025653 | 705 | + | 0.483688 | |
VV2047 | conserved hypothetical protein | chromosome I | CDS | 2049905 | 555 | + | 0.4 | |
VV2082 | guanylate cyclase-related protein | chromosome I | CDS | 2088519 | 558 | - | 0.46595 | |
VV2083 | MutT/nudix family protein | chromosome I | CDS | 2089144 | 627 | + | 0.45614 | |
VV2101 | DNA polymerase III, epsilon subunit | chromosome I | CDS | 2108016 | 717 | + | 0.502092 | |
VV2110 | transposase and inactivated derivative | chromosome I | CDS | 2118969 | 1338 | - | 0.457399 | |
VV2155 | conserved hypothetical protein | chromosome I | CDS | 2168876 | 1758 | + | 0.476109 | |
VV2163 | hypothetical protein | chromosome I | CDS | 2174448 | 333 | + | 0.438438 | |
VV2191 | iSSod13, transposase | chromosome I | CDS | 2198851 | 1041 | + | 0.445725 | |
VV2210 | hypothetical protein | chromosome I | CDS | 2220890 | 3243 | - | 0.434474 | |
VV2216 | phage family integrase | chromosome I | CDS | 2233868 | 225 | - | 0.417778 | |
VV2229 | transposase and inactivated derivative | chromosome I | CDS | 2249576 | 849 | - | 0.451119 | |
VV2230 | probable transposase | chromosome I | CDS | 2250414 | 282 | - | 0.443262 | |
VV2235 | transposase and inactivated derivative | chromosome I | CDS | 2256801 | 1338 | + | 0.461136 | |
VV2239 | hypothetical protein | chromosome I | CDS | 2261696 | 1047 | - | 0.389685 | |
VV2251 | DNA repair protein | chromosome I | CDS | 2272819 | 555 | + | 0.49009 | |
VV2254 | ribonuclease HI | chromosome I | CDS | 2274547 | 537 | - | 0.467412 | |
VV2262 | phage integrase | chromosome I | CDS | 2280454 | 1233 | - | 0.444444 | |
VV2284 | holliday junction resolvasome, helicase subunit | chromosome I | CDS | 2299827 | 1005 | - | 0.487562 | |
VV2285 | holliday junction resolvasome, DNA-binding subunit | chromosome I | CDS | 2300853 | 621 | - | 0.47504 | |
VV2287 | crossover junction endodeoxyribonuclease RuvC | chromosome I | CDS | 2303113 | 522 | - | 0.5 | |
VV2314 | DNA topoisomerase I | chromosome I | CDS | 2334069 | 2625 | - | 0.470095 | |
VV2317 | transposase and inactivated derivative | chromosome I | CDS | 2337553 | 1338 | - | 0.458894 | |
VV2329 | ATP-dependent helicase, DinG family | chromosome I | CDS | 2351617 | 2112 | + | 0.458807 | |
VV2331 | primosomal replication protein N'' | chromosome I | CDS | 2354553 | 546 | + | 0.459707 | |
VV2334 | exodeoxyribonuclease III | chromosome I | CDS | 2357661 | 807 | + | 0.467162 | |
VV2365 | transcription-repair coupling factor | chromosome I | CDS | 2393284 | 3462 | + | 0.500289 | |
VV2409 | Recombinational DNA repair protein | chromosome I | CDS | 2439865 | 603 | - | 0.512438 | |
VV2411 | DNA polymerase III, subunits gamma and tau | chromosome I | CDS | 2440890 | 2193 | - | 0.509348 | |
VV2456 | conserved hypothetical protein | chromosome I | CDS | 2490247 | 501 | - | 0.469062 | |
VV2529 | DNA polymerase III, epsilon subunit | chromosome I | CDS | 2559272 | 732 | - | 0.502732 | |
VV2530 | ribonuclease HI | chromosome I | CDS | 2560072 | 468 | + | 0.485043 | |
VV2541 | DNA polymerase III, alpha subunit | chromosome I | CDS | 2568588 | 3480 | - | 0.491667 | |
VV2543 | ribonuclease HII | chromosome I | CDS | 2572181 | 624 | - | 0.491987 | |
VV2580 | DNA helicase | chromosome I | CDS | 2607619 | 2115 | + | 0.478487 | |
VV2581 | DNA-damage-inducible protein P | chromosome I | CDS | 2609765 | 1077 | - | 0.472609 | |
VV2613 | ATP-dependent exoDNAse alpha subunit | chromosome I | CDS | 2636012 | 2115 | - | 0.52104 | |
VV2614 | ATP-dependent exoDNAse beta subunit | chromosome I | CDS | 2638123 | 3666 | - | 0.516367 | |
VV2615 | exonuclease V gamma subunit | chromosome I | CDS | 2642053 | 3489 | - | 0.501576 | |
VV2681 | Mg-dependent DNase | chromosome I | CDS | 2719985 | 840 | - | 0.463095 | |
VV2687 | DNA polymerase III, psi subunit | chromosome I | CDS | 2726628 | 417 | - | 0.460432 | |
VV2757 | ATP-dependent helicase HrpB | chromosome I | CDS | 2809622 | 2463 | - | 0.516037 | |
VV2805 | RecA recombinase | chromosome I | CDS | 2863509 | 1110 | - | 0.467568 | |
VV2806 | mismatch repair ATPase | chromosome I | CDS | 2865186 | 2655 | + | 0.495292 | |
VV2829 | Recombinational DNA repair protein | chromosome I | CDS | 2889445 | 732 | - | 0.498634 | |
VV2866 | endonuclease I | chromosome I | CDS | 2922278 | 696 | + | 0.475575 | |
VV2870 | uncharacterized protein conserved in bacteria | chromosome I | CDS | 2925424 | 423 | + | 0.482269 | |
VV2881 | putative DNA glycosylase | chromosome I | CDS | 2932846 | 627 | - | 0.526316 | |
VV2884 | A/G-specific adenine glycosylase | chromosome I | CDS | 2935458 | 1053 | + | 0.48623 | |
VV2908 | DNA polymerase III, chi subunit | chromosome I | CDS | 2968406 | 450 | + | 0.464444 | |
VV2925 | RNA polymerase-associated protein HepA | chromosome I | CDS | 2983798 | 2910 | - | 0.515464 | |
VV2953 | single-stranded DNA-binding protein | chromosome I | CDS | 3019042 | 540 | - | 0.522222 | |
VV2956 | excinuclease ATPase subunit | chromosome I | CDS | 3021692 | 2859 | + | 0.487233 | |
VV2979 | replicative DNA helicase | chromosome I | CDS | 3056522 | 1488 | - | 0.489919 | |
VV2983 | primosomal replication protein N | chromosome I | CDS | 3059663 | 303 | - | 0.455446 | |
VV2986 | site-specific DNA methylase | chromosome I | CDS | 3061400 | 828 | - | 0.454106 | |
VV3012 | primosomal protein N' | chromosome I | CDS | 3092601 | 2220 | + | 0.486486 | |
VV3073 | DNA mismatch repair enzyme | chromosome I | CDS | 3154187 | 1995 | - | 0.494236 | |
VV3091 | transposase and inactivated derivative | chromosome I | CDS | 3173627 | 1326 | + | 0.458522 | |
VV3132 | DNA polymerase III, epsilon subunit | chromosome I | CDS | 3215134 | 642 | + | 0.515576 | |
VV3139 | factor-for-inversion stimulation protein | chromosome I | CDS | 3222672 | 297 | + | 0.410774 | |
VV3145 | bacterial nucleoid DNA-binding protein | chromosome I | CDS | 3229355 | 306 | - | 0.434641 | |
VV3149 | uracil-DNA glycosylase | chromosome I | CDS | 3232621 | 594 | + | 0.491582 | |
VV3155 | MutT/nudix family protein | chromosome I | CDS | 3236048 | 735 | - | 0.480272 | |
VV3173 | predicted transposase | chromosome I | CDS | 3256807 | 282 | + | 0.429078 | |
VV3174 | transposase and inactivated derivative | chromosome I | CDS | 3257114 | 534 | + | 0.462547 | |
VV3176 | iSSod13, transposase | chromosome I | CDS | 3263697 | 1041 | - | 0.445725 | |
VV3183 | ATP-dependent RNA helicase RhlB | chromosome I | CDS | 3270781 | 1308 | + | 0.492355 | |
VV3187 | ATP-dependent DNA helicase RecQ | chromosome I | CDS | 3274926 | 1878 | - | 0.509585 | |
VV3191 | DNA helicase II | chromosome I | CDS | 3280176 | 2175 | - | 0.516782 | |
VV3211 | transposase and inactivated derivative | chromosome I | CDS | 3298657 | 492 | + | 0.410569 | |
VV3212 | conserved hypothetical protein | chromosome I | CDS | 3299174 | 288 | + | 0.493056 | |
VV3220 | transposase and inactivated derivative | chromosome I | CDS | 3310605 | 1338 | - | 0.458894 | |
VV3221 | DNA topoisomerase I-related protein | chromosome I | CDS | 3312055 | 696 | - | 0.472701 | |
VV3223 | Smf protein | chromosome I | CDS | 3313130 | 1104 | - | 0.506341 |