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2024-05-13 00:28:32

Gene list

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COG category: Replication, recombination and repair
Genomic element: chromosome 1

Number of genes found: 151

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Vibrio parahaemolyticus RIMD 2210633, O3:K6
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
VP0011 chromosomal DNA replication initiator DnaAchromosome 1 CDS7680 1407 + 0.497512
VP0012 DNA polymerase III, beta chainchromosome 1 CDS9150 1101 + 0.488647
VP0013 RecF proteinchromosome 1 CDS10260 1080 + 0.453704
VP0014 DNA gyrase, subunit Bchromosome 1 CDS11353 2418 + 0.479735
VP0041 ATP-dependent DNA helicase Repchromosome 1 CDS47155 2016 + 0.473214
VP0057 hypothetical proteinchromosome 1 CDS65314 1353 - 0.478197
VP0103 conserved hypothetical proteinchromosome 1 CDS109950 762 - 0.5
VP0107 DNA polymerase Ichromosome 1 CDS113147 2796 + 0.484979
VP0145 MutT/nudix family proteinchromosome 1 CDS155171 570 - 0.485965
VP0157 ATP-dependent DNA helicase RecGchromosome 1 CDS168535 2082 - 0.504803
VP0167 hypothetical proteinchromosome 1 CDS179218 765 - 0.452288
VP0184 DNA repair protein RadCchromosome 1 CDS197245 675 + 0.471111
VP0189 formamidopyrimidine-DNA glycosylasechromosome 1 CDS200912 810 + 0.475309
VP0196 conserved hypothetical proteinchromosome 1 CDS206439 717 + 0.429568
VP0208 putative integral membrane proteinchromosome 1 CDS218339 1107 + 0.29178
VP0253 primosomal protein N'chromosome 1 CDS264267 2205 - 0.4839
VP0288 ATP-dependent RNA helicase DbpAchromosome 1 CDS283987 1380 + 0.480435
VP0380 putative integrasechromosome 1 CDS381054 1368 + 0.418129
VP0394 haemagglutinin associated proteinchromosome 1 CDS392721 666 + 0.429429
VP0405 DNA primasechromosome 1 CDS405947 1761 - 0.458262
VP0426 MutT/nudix family proteinchromosome 1 CDS430134 651 + 0.457757
VP0430 topoisomerase IV, subunit Bchromosome 1 CDS432981 1881 + 0.487507
VP0431 DNA topoisomerase IVchromosome 1 CDS434865 2286 + 0.484689
VP0448 hypothetical proteinchromosome 1 CDS448735 366 - 0.418033
VP0468 mutator MutT proteinchromosome 1 CDS473012 399 + 0.41604
VP0498 endonuclease IVchromosome 1 CDS514090 888 + 0.449324
VP0500 uracil-DNA glycosylasechromosome 1 CDS515261 681 + 0.474303
VP0505 ATP-dependent RNA helicase SrmBchromosome 1 CDS520166 1224 - 0.490196
VP0509 integrase/recombinase XerDchromosome 1 CDS524638 918 + 0.496732
VP0511 single-stranded-DNA-specific exonuclease RecJchromosome 1 CDS526449 1740 + 0.490805
VP0518 DNA mismatch repair protein MutHchromosome 1 CDS535008 681 - 0.480176
VP0520 MutT/nudix family proteinchromosome 1 CDS536307 525 + 0.441905
VP0542 hypothetical proteinchromosome 1 CDS559452 333 + 0.42042
VP0568 conserved hypothetical proteinchromosome 1 CDS591062 915 - 0.453552
VP0614 conserved hypothetical proteinchromosome 1 CDS639562 225 + 0.408889
VP0615 exodeoxyribonuclease VII, large subunitchromosome 1 CDS639808 1332 - 0.471471
VP0638 putative resolvasechromosome 1 CDS669568 651 + 0.490015
VP0642 putative ribonuclease HIchromosome 1 CDS672008 498 + 0.493976
VP0643 hypothetical proteinchromosome 1 CDS672556 1800 - 0.463889
VP0648 DNA repair protein RecNchromosome 1 CDS676920 1665 - 0.463063
VP0688 exodeoxyribonuclease, small subunitchromosome 1 CDS720852 243 - 0.45679
VP0697 exodeoxyribonuclease IXchromosome 1 CDS729410 783 - 0.481481
VP0725 DNA polymerase III, delta subunitchromosome 1 CDS759734 1020 - 0.452941
VP0728 conserved hypothetical proteinchromosome 1 CDS764202 471 + 0.441614
VP0800 DNA ligasechromosome 1 CDS833351 2013 + 0.468455
VP0838 SeqA proteinchromosome 1 CDS868399 543 + 0.427256
VP0865 ATP-dependent helicase, DinG familychromosome 1 CDS898070 1911 + 0.470958
VP0903 RhlEchromosome 1 CDS935077 1236 + 0.487864
VP0920 DNA-binding protein HU-betachromosome 1 CDS957872 273 + 0.443223
VP0922 conserved hypothetical proteinchromosome 1 CDS960339 300 + 0.403333
VP0951 methylated-DNA-protein-cysteine methyltransferase-related proteinchromosome 1 CDS992090 303 - 0.432343
VP0975 transcription-repair coupling factorchromosome 1 CDS1014846 3462 - 0.479203
VP1003 exodeoxyribonuclease IIIchromosome 1 CDS1050256 807 - 0.447336
VP1005 primosomal replication protein N''chromosome 1 CDS1051317 546 - 0.46337
VP1007 ATP-dependent helicase, DinG familychromosome 1 CDS1052659 2076 - 0.459056
VP1022 DNA topoisomerase Ichromosome 1 CDS1069863 2631 + 0.459901
VP1048 crossover junction endodeoxyribonuclease RuvCchromosome 1 CDS1099343 522 + 0.492337
VP1051 holliday junction DNA helicase RuvAchromosome 1 CDS1101517 615 + 0.466667
VP1052 holliday junction DNA helicase RuvBchromosome 1 CDS1102153 1005 + 0.472637
VP1071 hypothetical proteinchromosome 1 CDS1121252 1137 + 0.391381
VP1072 putative helicasechromosome 1 CDS1122580 1824 + 0.39693
VP1075 hypothetical proteinchromosome 1 CDS1125582 630 + 0.422222
VP1077 integrase, phage familychromosome 1 CDS1127706 1239 + 0.454399
VP1080 hypothetical proteinchromosome 1 CDS1132416 1419 + 0.460183
VP1083 putative ATP-dependent DNA helicasechromosome 1 CDS1135576 3420 + 0.422515
VP1107 conserved hypothetical proteinchromosome 1 CDS1166412 1350 + 0.494074
VP1179 DNA-3-methyladenine glycosidase Ichromosome 1 CDS1237873 567 + 0.451499
VP1214 helicase-related proteinchromosome 1 CDS1273742 1752 - 0.47032
VP1259 putative ATP-dependent helicasechromosome 1 CDS1331538 2355 + 0.484501
VP1294 integration host factor, alpha subunitchromosome 1 CDS1374557 297 + 0.430976
VP1301 exodeoxyribonuclease Ichromosome 1 CDS1380502 1422 - 0.468354
VP1353 hypothetical proteinchromosome 1 CDS1436164 660 + 0.439394
VP1400 hypothetical proteinchromosome 1 CDS1502624 2061 + 0.422125
VP1436 hypothetical proteinchromosome 1 CDS1542193 729 - 0.445816
VP1442 conserved hypothetical proteinchromosome 1 CDS1550626 531 + 0.483992
VP1453 ATP-dependent helicase HrpAchromosome 1 CDS1562168 3987 + 0.475796
VP1477 DNA ligasechromosome 1 CDS1588897 843 + 0.47331
VP1484 hypothetical proteinchromosome 1 CDS1596903 345 + 0.434783
VP1487 putative MutT/nudix family proteinchromosome 1 CDS1600165 420 + 0.421429
VP1551 bacteriophage f237 ORF1chromosome 1 CDS1659416 1209 + 0.488834
VP1641 MutT/nudix family proteinchromosome 1 CDS1755287 1425 - 0.455439
VP1724 putative DNA polymerase III, epsilon subunitchromosome 1 CDS1838259 747 - 0.464525
VP1787 putative transposasechromosome 1 CDS1900885 852 - 0.473005
VP1788 putative transposasechromosome 1 CDS1901751 285 - 0.470175
VP1796 hypothetical proteinchromosome 1 CDS1906333 846 - 0.377069
VP1825 putative CBS domain containing proteinchromosome 1 CDS1925696 771 - 0.399481
VP1829 RelB protein/Vco27A proteinchromosome 1 CDS1928666 285 + 0.417544
VP1842 RelB proteinchromosome 1 CDS1935447 354 + 0.423729
VP1865 site-specific recombinase IntIAchromosome 1 CDS1948281 963 + 0.42783
VP1878 MutT/nudix family proteinchromosome 1 CDS1961432 600 + 0.44
VP1903 putative DNA polymerase III, epsilon subunitchromosome 1 CDS1986707 732 + 0.474044
VP1932 DNA gyrase, subunit Achromosome 1 CDS2016922 2637 - 0.471369
VP1944 excinuclease ABC, subunit Cchromosome 1 CDS2035634 1833 - 0.454992
VP1946 DNA polymerase IIchromosome 1 CDS2038612 2364 + 0.453046
VP1985 hypothetical proteinchromosome 1 CDS2079712 1245 - 0.462651
VP2029 integration host factor, beta subunitchromosome 1 CDS2126683 282 - 0.450355
VP2034 hypothetical proteinchromosome 1 CDS2132072 693 + 0.458874
VP2035 hypothetical proteinchromosome 1 CDS2132769 1404 + 0.462963
VP2036 putative DNA polymerase III alpha chainchromosome 1 CDS2134179 3075 + 0.461138
VP2047 putative deoxyribonucleasechromosome 1 CDS2148368 768 - 0.429688
VP2048 DNA polymerase III, delta prime subunitchromosome 1 CDS2149126 963 - 0.449637
VP2100 excinuclease ABC, subunit Bchromosome 1 CDS2207590 2031 - 0.468242
VP2108 endonuclease IIIchromosome 1 CDS2216865 642 + 0.419003
VP2114 ribonuclease Tchromosome 1 CDS2219979 645 + 0.435659
VP2131 hypothetical proteinchromosome 1 CDS2240007 1338 + 0.411809
VP2136 putative pore-forming cytotoxin integrasechromosome 1 CDS2246231 1113 + 0.428571
VP2149 DNA topoisomerase IIIchromosome 1 CDS2258903 1965 - 0.474809
VP2177 recombination protein RecRchromosome 1 CDS2287435 600 - 0.485
VP2179 DNA polymerase III, subunits gamma and tauchromosome 1 CDS2288476 2136 - 0.480805
VP2292 DNA polymerase III, epsilon subunitchromosome 1 CDS2402894 723 - 0.46473
VP2293 ribonuclease HIchromosome 1 CDS2403675 465 + 0.503226
VP2303 DNA polymerase III, alpha subunitchromosome 1 CDS2412463 3480 - 0.483333
VP2304 ribonuclease HIIchromosome 1 CDS2416025 636 - 0.477987
VP2339 conserved hypothetical proteinchromosome 1 CDS2451243 744 - 0.436828
VP2340 putative ATP-dependent DNA helicase RecQchromosome 1 CDS2452565 1965 + 0.464631
VP2342 DNA-damage-inducible protein Pchromosome 1 CDS2454531 1065 - 0.450704
VP2373 exodeoxyribonuclease V, 67 kDa subunitchromosome 1 CDS2481388 2148 - 0.480447
VP2374 exodeoxyribonuclease V, 135 kDa subunitchromosome 1 CDS2483535 3684 - 0.487785
VP2375 exodeoxyribonuclease V, 125 kDa subunitchromosome 1 CDS2487537 3492 - 0.482531
VP2439 putative hydrolasechromosome 1 CDS2560355 774 - 0.44832
VP2442 DNA polymerase III, psi subunitchromosome 1 CDS2563629 399 - 0.438596
VP2498 ATP-dependent helicase HrpBchromosome 1 CDS2638039 2469 - 0.480761
VP2550 RecA proteinchromosome 1 CDS2693309 1044 - 0.464559
VP2552 DNA mismatch repair protein MutSchromosome 1 CDS2695120 2562 + 0.480094
VP2570 DNA repair protein RecOchromosome 1 CDS2716482 732 - 0.486339
VP2609 extracellular deoxyribonuclease precursorchromosome 1 CDS2753426 696 + 0.498563
VP2613 conserved hypothetical proteinchromosome 1 CDS2756668 426 + 0.460094
VP2624 hypothetical proteinchromosome 1 CDS2765426 1029 - 0.462585
VP2626 A/G-specific adenine glycosylasechromosome 1 CDS2767389 1077 + 0.46611
VP2645 DNA polymerase III, chi subunitchromosome 1 CDS2797543 450 + 0.457778
VP2682 RNA polymerase-associated protein HepAchromosome 1 CDS2829447 2910 - 0.491065
VP2709 single-strand binding proteinchromosome 1 CDS2864817 531 - 0.491525
VP2712 excinuclease ABC, subunit Achromosome 1 CDS2867538 2823 + 0.478569
VP2735 replicative DNA helicasechromosome 1 CDS2900736 1401 - 0.488936
VP2739 primosomal replication protein Nchromosome 1 CDS2904026 303 - 0.452145
VP2742 DNA adenine methylasechromosome 1 CDS2905743 840 - 0.467857
VP2819 DNA mismatch repair protein MutLchromosome 1 CDS2982292 2010 - 0.478607
VP2877 putative DNA polymerase III, epsilon subunitchromosome 1 CDS3048802 630 + 0.48254
VP2885 factor-for-inversion stimulation proteinchromosome 1 CDS3056404 297 + 0.410774
VP2909 hypothetical proteinchromosome 1 CDS3097104 1605 - 0.350779
VP2910 hypothetical proteinchromosome 1 CDS3098708 1272 - 0.404088
VP2911 DNA-binding protein HU-2chromosome 1 CDS3100212 276 - 0.445652
VP2915 conserved hypothetical proteinchromosome 1 CDS3103510 573 + 0.481675
VP2919 MutT/nudix familychromosome 1 CDS3107034 783 - 0.471264
VP2957 conserved hypothetical proteinchromosome 1 CDS3160972 600 + 0.468333
VP2981 integrase/recombinase XerCchromosome 1 CDS3180809 933 - 0.519828
VP3002 ATP-dependent RNA helicase RhlBchromosome 1 CDS3204822 1314 + 0.493912
VP3007 ATP-dependent DNA helicase RecQchromosome 1 CDS3209122 1836 - 0.500545
VP3013 DNA helicase IIchromosome 1 CDS3216340 2175 - 0.497011
VP3038 DNA topoisomerase I-related proteinchromosome 1 CDS3245416 570 - 0.47193
VP3040 Smf proteinchromosome 1 CDS3246546 1113 - 0.48248