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2024-05-20 20:30:55

Gene list

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COG category: Replication, recombination and repair
Genomic element: chromosome

Number of genes found: 131

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Staphylococcus saprophyticus subsp. saprophyticus, ATCC 15305
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
NA SSP1605 putative transposaseSubName: Full=Putative transposase; chromosome CDS1676693 909 - 0.277228
NA SSP1649 excinuclease ABC subunit CRecName: Full=UvrABC system protein C; Short=Protein UvrC; AltName: Full=Excinuclease ABC subunit C; chromosome CDS1713990 1788 - 0.33557
NA SSP1199 endonuclease IVRecName: Full=Probable endonuclease 4; EC=3.1.21.2; AltName: Full=Endodeoxyribonuclease IV; AltName: Full=Endonuclease IV; chromosome CDS1244145 891 + 0.30752
NA SSP1123 putative single-strand DNA-specific exonucleaseSubName: Full=Putative single-strand DNA-specific exonuclease; chromosome CDS1169072 2280 + 0.324561
NA SSP1076 putative formamidopyrimidine-DNA glycosylaseSubName: Full=Putative formamidopyrimidine-DNA glycosylase; chromosome CDS1122866 885 + 0.336723
NA SSP1624 excinuclease ATPase subunitSubName: Full=Excinuclease ATPase subunit; chromosome CDS1690018 2262 - 0.314324
NA SSP1809 putative ATP-dependent nuclease subunit BRecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B; EC=3.1.-.-; EC=3.6.4.12; AltName: Full=ATP-dependent helicase/nuclease AddB; chromosome CDS1888531 3462 - 0.3368
NA SSP0831 putative DNA mismatch repair proteinSubName: Full=Putative DNA mismatch repair protein; chromosome CDS862317 1647 - 0.301761
NA SSP0039 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS46830 1428 - 0.257003
NA SSP0901 putative truncated transposase chromosome CDS931303 114 + 0.219298
NA SSP1431 truncated transposase chromosome CDS1482916 699 + 0.337625
NA SSP1117 Holliday junction DNA helicaseRecName: Full=Holliday junction ATP-dependent DNA helicase RuvA; EC=3.6.4.12; chromosome CDS1162121 603 + 0.353234
NA SSP1444 thermonucleaseSubName: Full=Thermonuclease; chromosome CDS1496146 531 - 0.335217
NA SSP0029 putative modification methylaseSubName: Full=Putative modification methylase; chromosome CDS37714 1044 + 0.272031
NA SSP1937 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1998254 639 - 0.328638
NA SSP2268 putative endonucleaseRecName: Full=UPF0213 protein SSP2268; chromosome CDS2344216 249 - 0.277108
NA SSP1231 exodeoxyribonuclease large subunitRecName: Full=Exodeoxyribonuclease 7 large subunit; EC=3.1.11.6; AltName: Full=Exodeoxyribonuclease VII large subunit; Short=Exonuclease VII large subunit; chromosome CDS1270413 1338 + 0.310912
NA SSP0911 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS939308 285 - 0.340351
NA SSP1292 putative endonucleaseRecName: Full=Endonuclease III; EC=4.2.99.18; AltName: Full=DNA-(apurinic or apyrimidinic site) lyase; chromosome CDS1336549 660 + 0.339394
NA SSP0887 NAD-dependent DNA ligaseRecName: Full=DNA ligase; EC=6.5.1.2; AltName: Full=Polydeoxyribonucleotide synthase [NAD(+)]; chromosome CDS914684 2004 + 0.353293
NA SSP0902 putative truncated transposase chromosome CDS931535 306 + 0.326797
NA SSP0036 cassette chromosome recombinase ASubName: Full=Cassette chromosome recombinase A; chromosome CDS43065 1350 - 0.346667
NA SSP1304 putative 5'-3' exonucleaseSubName: Full=Putative 5&apos-3&apos exonuclease; chromosome CDS1351032 882 + 0.328798
NA SSP1959 excinuclease ABC subunit BRecName: Full=UvrABC system protein B; Short=Protein UvrB; AltName: Full=Excinuclease ABC subunit B; chromosome CDS2019623 1983 - 0.369642
NA SSP0005 DNA gyrase subunit BRecName: Full=DNA gyrase subunit B; EC=5.99.1.3; chromosome CDS5173 1926 + 0.372793
NA SSP1606 putative transposaseSubName: Full=Putative transposase; chromosome CDS1677562 684 - 0.282164
NA SSP1808 putative ATP-dependent nuclease subunit ARecName: Full=ATP-dependent helicase/nuclease subunit A; EC=3.1.-.-; EC=3.6.4.12; AltName: Full=ATP-dependent helicase/nuclease AddA; chromosome CDS1884872 3660 - 0.347268
NA SSP1958 excinuclease ABC subunit ARecName: Full=UvrABC system protein A; Short=UvrA protein; AltName: Full=Excinuclease ABC subunit A; chromosome CDS2016780 2838 - 0.368217
NA SSP1641 transposase IS431SubName: Full=Transposase IS431; chromosome CDS1706278 675 - 0.348148
NA SSP1404 topoisomerase IV subunit BRecName: Full=DNA topoisomerase 4 subunit B; EC=5.99.1.3; AltName: Full=Topoisomerase IV subunit B; chromosome CDS1451739 2001 - 0.347326
NA SSP1171 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1215289 975 + 0.272821
NA SSP1881 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1957677 498 - 0.279116
NA SSP0886 ATP-dependent DNA helicaseSubName: Full=ATP-dependent DNA helicase; chromosome CDS912464 2217 + 0.345963
NA SSP1299 putative N6-adenine-specific DNA methylaseSubName: Full=Putative N6-adenine-specific DNA methylase; chromosome CDS1342984 1134 + 0.364198
NA SSP0002 DNA polymerase III beta subunitRecName: Full=DNA polymerase III subunit beta; EC=2.7.7.7; chromosome CDS2124 1131 + 0.33687
NA SSP1522 ribonuclease HIIRecName: Full=Ribonuclease HII; Short=RNase HII; EC=3.1.26.4; chromosome CDS1582764 771 - 0.329442
NA SSP1411 putative exonucleaseRecName: Full=Nuclease SbcCD subunit C; chromosome CDS1461138 3030 - 0.291749
NA SSP1305 putative RNase HSubName: Full=Putative RNase H; chromosome CDS1352189 408 - 0.328431
NA SSP1664 putative N6-adenine-specific methylaseSubName: Full=Putative N6-adenine-specific methylase; chromosome CDS1731455 543 - 0.313076
NA SSP0028 putative DNA modification methylaseSubName: Full=Putative DNA modification methylase; chromosome CDS36942 780 + 0.280769
NA SSP2372 single-strand DNA-binding proteinRecName: Full=Single-stranded DNA-binding protein; chromosome CDS2438862 513 - 0.364522
NA SSP0335 transposaseSubName: Full=Transposase; chromosome CDS368198 999 - 0.332332
NA SSP0802 putative ATP-dependent RNA helicaseRecName: Full=Probable DEAD-box ATP-dependent RNA helicase SSP0802; EC=3.6.4.13; chromosome CDS828784 1521 + 0.364234
NA SSP0989 transposaseSubName: Full=Transposase; chromosome CDS1021072 702 - 0.2849
NA SSP1868 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1948998 393 - 0.3257
NA SSP1064 DNA polymerase III alpha chainSubName: Full=DNA polymerase III alpha chain; chromosome CDS1103048 3204 + 0.326155
NA SSP1642 probable truncated integrase chromosome CDS1707084 729 + 0.289438
NA SSP1145 putative endonuclease involved in recombinationRecName: Full=Putative Holliday junction resolvase; EC=3.1.-.-; chromosome CDS1194629 429 + 0.354312
NA SSP0991 putative truncated transposase chromosome CDS1022045 567 - 0.303351
NA SSP0006 DNA gyrase subunit ARecName: Full=DNA gyrase subunit A; EC=5.99.1.3; chromosome CDS7134 2694 + 0.380104
NA SSP1289 putative ATP-dependent DNA helicaseRecName: Full=Probable ATP-dependent helicase DinG homolog; EC=3.6.4.12; chromosome CDS1331694 2703 + 0.303737
NA SSP1253 putative ADP-ribose pyrophosphataseSubName: Full=Putative ADP-ribose pyrophosphatase; chromosome CDS1297055 543 + 0.320442
NA SSP0322 putative 6-O-methylguanine DNA methyltransferaseSubName: Full=Putative 6-O-methylguanine DNA methyltransferase; chromosome CDS352256 534 + 0.357678
NA SSP2265 putative deoxyribonucleaseSubName: Full=Putative deoxyribonuclease; chromosome CDS2340290 774 - 0.379845
NA SSP0955 putative metallophosphoesteraseSubName: Full=Putative metallophosphoesterase; chromosome CDS988177 1185 + 0.311392
NA SSP1388 putative DNA-damage repair proteinSubName: Full=Putative DNA-damage repair protein; chromosome CDS1431483 1263 - 0.330166
NA SSP1611 transposase IS431SubName: Full=Transposase IS431; chromosome CDS1680292 675 - 0.340741
NA SSP1190 putative recombination protein ORecName: Full=DNA repair protein RecO; AltName: Full=Recombination protein O; chromosome CDS1233267 756 + 0.314815
NA SSP1232 exodeoxyribonuclease small subunitRecName: Full=Exodeoxyribonuclease 7 small subunit; EC=3.1.11.6; AltName: Full=Exodeoxyribonuclease VII small subunit; chromosome CDS1271743 246 + 0.288618
NA SSP0035 cassette chromosome recombinase BSubName: Full=Cassette chromosome recombinase B; chromosome CDS41416 1629 - 0.343769
NA SSP0925 putative A G-specific DNA glycosylaseSubName: Full=Putative A G-specific DNA glycosylase; chromosome CDS950551 1047 + 0.322827
NA SSP2264 conserved hypothetical proteinRecName: Full=Ribonuclease M5; EC=3.1.26.8; AltName: Full=RNase M5; AltName: Full=Ribosomal RNA terminal maturase M5; chromosome CDS2339602 552 - 0.349638
NA SSP0043 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS53649 1101 + 0.35604
NA SSP1651 MutS-like proteinRecName: Full=Endonuclease MutS2; EC=3.1.-.-; chromosome CDS1716379 2349 - 0.328651
NA SSP1519 DprA SMF protein putative DNA processing factorSubName: Full=DprA SMF protein putative DNA processing factor; chromosome CDS1579381 876 - 0.326484
NA SSP1142 ATP-dependent exonuclease V alpha subunitSubName: Full=ATP-dependent exonuclease V alpha subunit; chromosome CDS1188933 2385 + 0.329979
NA SSP1559 primosomal proteinSubName: Full=Primosomal protein; chromosome CDS1625627 2409 - 0.342051
NA SSP1198 putative helicaseSubName: Full=Putative helicase; chromosome CDS1242795 1341 + 0.314691
NA SSP1504 DNA polymerase III alpha chain PolC-typeRecName: Full=DNA polymerase III PolC-type; Short=PolIII; EC=2.7.7.7; chromosome CDS1558499 4317 - 0.353023
NA SSP2111 putative endonuclease IIIRecName: Full=Endonuclease III; EC=4.2.99.18; chromosome CDS2177863 645 - 0.328682
NA SSP1081 primosomal proteinSubName: Full=Primosomal protein; chromosome CDS1127783 924 + 0.343074
NA SSP0042 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS51947 1476 + 0.275068
NA SSP1255 site-specific recombinaseRecName: Full=Tyrosine recombinase XerD; chromosome CDS1298187 888 + 0.324324
NA SSP0289 putative DNA-3-methyladenine glycosidaseSubName: Full=Putative DNA-3-methyladenine glycosidase; chromosome CDS314030 666 - 0.364865
NA SSP1075 DNA polymerase IRecName: Full=DNA polymerase; EC=2.7.7.7; chromosome CDS1120220 2631 + 0.330293
NA SSP1053 putative adenine-specific DNA methylaseSubName: Full=Putative adenine-specific DNA methylase; chromosome CDS1091895 948 + 0.337553
NA SSP1273 bacterial nucleoid DNA-binding protein HUSubName: Full=Bacterial nucleoid DNA-binding protein HU; chromosome CDS1317112 273 + 0.373626
NA SSP1480 RecA recombinaseRecName: Full=Protein RecA; AltName: Full=Recombinase A; chromosome CDS1532055 1050 - 0.38
NA SSP0581 putative truncated transposase chromosome CDS619311 234 + 0.25641
NA SSP1080 chromosome replication initiation membrane attachment proteinSubName: Full=Chromosome replication initiation membrane attachment protein; chromosome CDS1126413 1374 + 0.311499
NA SSP2276 recombinational DNA repair proteinRecName: Full=Recombination protein RecR; chromosome CDS2355624 597 - 0.368509
NA SSP0001 chromosomal replication initiator proteinRecName: Full=Chromosomal replication initiator protein DnaA; chromosome CDS509 1368 + 0.334064
NA SSP1108 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1156804 459 + 0.324619
NA SSP1518 DNA topoisomerase IARecName: Full=DNA topoisomerase 1; EC=5.99.1.2; AltName: Full=DNA topoisomerase I; AltName: Full=Omega-protein; AltName: Full=Relaxing enzyme; AltName: Full=Swivelase; AltName: Full=Untwisting enzyme; chromosome CDS1577112 2067 - 0.344461
NA SSP1543 ATP-dependent DNA helicaseSubName: Full=ATP-dependent DNA helicase; chromosome CDS1608416 2046 - 0.346041
NA SSP2253 transcription-repair coupling factorRecName: Full=Transcription-repair-coupling factor; Short=TRCF; EC=3.6.4.-; chromosome CDS2327349 3513 - 0.347282
NA SSP1516 putative integrase recombinaseRecName: Full=Tyrosine recombinase XerC; chromosome CDS1574641 891 - 0.340067
NA SSP0659 DNA topoisomerase IIIRecName: Full=DNA topoisomerase 3; EC=5.99.1.2; AltName: Full=DNA topoisomerase III; chromosome CDS694092 2139 + 0.335203
NA SSP1655 putative ribonuclease HIIIRecName: Full=Ribonuclease HIII; Short=RNase HIII; EC=3.1.26.4; chromosome CDS1721657 933 + 0.336549
NA SSP1464 DNA mismatch repair proteinRecName: Full=DNA mismatch repair protein MutL; chromosome CDS1515347 1968 - 0.335366
NA SSP1465 DNA mismatch repair proteinRecName: Full=DNA mismatch repair protein MutS; chromosome CDS1517327 2664 - 0.329204
NA SSP1671 putative truncated excinuclease ABC subunit A chromosome CDS1736446 1506 + 0.343958
NA SSP0787 putative single strand DNA binding proteinRecName: Full=Single-stranded DNA-binding protein; chromosome CDS814904 420 + 0.304762
NA SSP0990 putative truncated transposase chromosome CDS1021884 240 - 0.341667
NA SSP0046 cassette chromosome recombinase CSubName: Full=Cassette chromosome recombinase C; chromosome CDS56975 1683 + 0.341058
NA SSP1670 putative truncated excinuclease ABC subunit A chromosome CDS1735694 798 + 0.340852
NA SSP0903 putative truncated transposase chromosome CDS932089 621 + 0.257649
NA SSP0038 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS44914 1791 - 0.374093
NA SSP0897 putative exonucleaseSubName: Full=Putative exonuclease; chromosome CDS927780 555 - 0.345946
NA SSP2278 DNA polymerase III gamma and tau subunitsSubName: Full=DNA polymerase III gamma and tau subunits; chromosome CDS2356632 1713 - 0.3561
NA SSP1105 putative DNA repair proteinRecName: Full=UPF0758 protein SSP1105; chromosome CDS1155080 681 + 0.306902
NA SSP1403 topoisomerase IV subunit ARecName: Full=DNA topoisomerase 4 subunit A; EC=5.99.1.3; AltName: Full=Topoisomerase IV subunit A; chromosome CDS1449340 2403 - 0.342072
NA SSP1966 putative helicaseSubName: Full=Putative helicase; chromosome CDS2030008 903 - 0.337763
NA SSP2097 putative recombinaseSubName: Full=Putative recombinase; chromosome CDS2166145 552 - 0.300725
NA SSP0973 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1008009 477 + 0.337526
NA SSP0016 replicative DNA helicaseSubName: Full=Replicative DNA helicase; chromosome CDS20443 1410 + 0.389362
NA SSP0030 putative replication protein RepASubName: Full=Putative replication protein RepA; chromosome CDS38843 513 - 0.259259
NA SSP1118 Holliday junction DNA helicaseRecName: Full=Holliday junction ATP-dependent DNA helicase RuvB; EC=3.6.4.12; chromosome CDS1162757 1005 + 0.362189
NA SSP0004 DNA repair and genetic recombination proteinRecName: Full=DNA replication and repair protein RecF; chromosome CDS4036 1116 + 0.342294
NA SSP2272 DNA polymerase III delta' subunitSubName: Full=DNA polymerase III delta&apos subunit; chromosome CDS2346465 930 - 0.307527
NA SSP0040 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS48684 1194 + 0.262144
NA SSP1265 putative ATP-dependent DNA helicaseSubName: Full=Putative ATP-dependent DNA helicase; chromosome CDS1306775 1380 + 0.315942
NA SSP1998 ATP-dependent DNA helicaseSubName: Full=ATP-dependent DNA helicase; chromosome CDS2064213 1779 - 0.33783
NA SSP1132 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1180438 1284 - 0.359813
NA SSP1933 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1995297 507 - 0.35503
NA SSP0896 putative nucleotidyltransferase DNA polymerase involved in DNA repairRecName: Full=DNA polymerase IV; Short=Pol IV; EC=2.7.7.7; chromosome CDS926648 1071 + 0.351074
NA SSP1100 DNA-3-methyladenine glycosidaseSubName: Full=DNA-3-methyladenine glycosidase; chromosome CDS1148113 567 - 0.322751
NA SSP0074 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS85137 3225 + 0.299535
NA SSP1194 DNA primaseRecName: Full=DNA primase; EC=2.7.7.-; chromosome CDS1237440 1785 + 0.298599
NA SSP1976 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS2040767 894 - 0.298658
NA SSP1168 putative DNA uptake protein and related DNA-binding proteinSubName: Full=Putative DNA uptake protein and related DNA-binding protein; chromosome CDS1211740 723 + 0.295989
NA SSP1412 putative exonucleaseRecName: Full=Nuclease SbcCD subunit D; chromosome CDS1464168 1131 - 0.293546
NA SSP1235 DNA repair proteinRecName: Full=DNA repair protein RecN; AltName: Full=Recombination protein N; chromosome CDS1273958 1683 + 0.318479
NA SSP0580 putative truncated transposase chromosome CDS619129 255 + 0.27451
NA SSP0561 putative 3-methylpurine glycosylaseRecName: Full=Putative 3-methyladenine DNA glycosylase; EC=3.2.2.-; chromosome CDS596708 612 - 0.385621
NA SSP2134 uracil-DNA glycosylaseRecName: Full=Uracil-DNA glycosylase; Short=UDG; EC=3.2.2.27; chromosome CDS2199331 657 - 0.374429
NA SSP1423 transposaseSubName: Full=Transposase; chromosome CDS1474035 999 + 0.332332
NA SSP1291 putative chromosome replication initiation proteinSubName: Full=Putative chromosome replication initiation protein; chromosome CDS1335873 687 + 0.312955
NA SSP0654 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS689709 177 - 0.276836
NA SSP2204 putative kinaseSubName: Full=Putative kinase; chromosome CDS2261531 489 - 0.333333
NA SSP1947 integraseSubName: Full=Integrase; chromosome CDS2005132 1050 + 0.308571