Gene list
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COG category: Replication, recombination and repair
Genomic element: chromosome
Number of genes found: 174
Show UniProt / TrEMBL protein name | View in Fasta format (DNA) | View in Fasta format (Protein) | ||||
Clostridium acetobutylicum ATCC 824, ATCC 824 | ||||||||
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Name | Locus tag | Product / Description | Genomic element | Type | Begin | Length | Strand | GC-content |
CAC0001 | DNA replication initiator protein, ATPase | chromosome | CDS | 467 | 1341 | + | 0.313945 | |
CAC0002 | DNA polymerase III beta subunit | chromosome | CDS | 2064 | 1101 | + | 0.277929 | |
CAC0004 | RecF, ABC family ATPase | chromosome | CDS | 3447 | 1092 | + | 0.271978 | |
CAC0006 | DNA gyrase (topoisomerase II) B subunit | chromosome | CDS | 4844 | 1914 | + | 0.341693 | |
CAC0007 | DNA gyrase (topoisomerase II) A subunit | chromosome | CDS | 6783 | 2493 | + | 0.331729 | |
CAC0084 | MutT/Nudix family hydrolase | chromosome | CDS | 93048 | 477 | + | 0.33543 | |
CAC0125 | DNA-directed DNA polymerase, III chain (dnaX) | chromosome | CDS | 136415 | 1629 | + | 0.343155 | |
CAC0127 | Recombination protein (recR) | chromosome | CDS | 138573 | 597 | + | 0.361809 | |
CAC0145 | N-terminal Zn-ribbon domain and C-terminal MutT domain, YJAD ortholog | chromosome | CDS | 150238 | 525 | + | 0.344762 | |
CAC0219 | Uracyl DNA glycosilase | chromosome | CDS | 243640 | 600 | - | 0.313333 | |
CAC0222 | Exodeoxyribonuclease (exoA) | chromosome | CDS | 246602 | 753 | + | 0.333333 | |
CAC0223 | Predicted N6-adenine-specific DNA methylase | chromosome | CDS | 247841 | 1122 | + | 0.341355 | |
CAC0248 | Transposon related protein | chromosome | CDS | 278146 | 270 | + | 0.251852 | |
CAC0285 | DNA-damage repair protein, dinP/uvrX ortholog | chromosome | CDS | 324603 | 1191 | + | 0.326616 | |
CAC0300 | DNA-polymerase III, gamma subunit | chromosome | CDS | 355339 | 945 | + | 0.291005 | |
CAC0326 | ATPase related to the helicase subunit of Holliday junction resolvase | chromosome | CDS | 383330 | 1332 | - | 0.343844 | |
CAC0336 | Hypothetical protein, CF-22 family | chromosome | CDS | 396432 | 525 | + | 0.262857 | |
CAC0362 | Hypothetical protein | chromosome | CDS | 422063 | 408 | + | 0.296569 | |
CAC0363 | Deoxyinosine 3'endonuclease | chromosome | CDS | 422605 | 705 | + | 0.32766 | |
CAC0404 | Serine/threonine protein kinase fused to TPR repeats domain | chromosome | CDS | 467702 | 1974 | + | 0.306991 | |
CAC0414 | Hypothetical protein | chromosome | CDS | 479915 | 981 | + | 0.302752 | |
CAC0446 | Hydrolase of MutT (Nudix) family | chromosome | CDS | 514560 | 621 | + | 0.310789 | |
CAC0474 | ACT domain containing transcriptional regulators, related to gcvR of E.coli | chromosome | CDS | 545469 | 2931 | + | 0.313886 | |
CAC0502 | Excinuclease ABC subunit B (helicase subunit of the DNA excision repair complex) | chromosome | CDS | 575260 | 2001 | + | 0.321339 | |
CAC0503 | Excinuclease ABC subunit A (ATP-ase), (uvrA) | chromosome | CDS | 577260 | 2820 | + | 0.334043 | |
CAC0508 | Excinuclease ABC subunit C | chromosome | CDS | 583923 | 1872 | + | 0.314103 | |
CAC0516 | DNA polimerase III, alpha chain (dnaE) | chromosome | CDS | 592466 | 3504 | + | 0.324772 | |
CAC0588 | Hypothetical protein | chromosome | CDS | 680811 | 621 | + | 0.273752 | |
CAC0638 | Hypothetical protein | chromosome | CDS | 742538 | 1854 | + | 0.294498 | |
CAC0656 | Predicted transposase (3' fragment) | chromosome | CDS | 762675 | 570 | - | 0.280702 | |
CAC0657 | Predicted transposase (5' fragment) | chromosome | CDS | 763280 | 1005 | - | 0.263682 | |
CAC0689 | Predicted endonuclease, gene nth | chromosome | CDS | 795266 | 636 | + | 0.334906 | |
CAC0699 | Spore photoproduct lyase, splB | chromosome | CDS | 808268 | 1011 | + | 0.312562 | |
CAC0738 | DNA polymerase III epsilon subunit (3'-5' exonuclease) containing BRCT domain | chromosome | CDS | 856676 | 921 | + | 0.312704 | |
CAC0759 | Hypothetical protein | chromosome | CDS | 881870 | 627 | + | 0.30622 | |
CAC0778 | ATP-dependent RNA helicase, superfamily II | chromosome | CDS | 900231 | 1758 | + | 0.319113 | |
CAC0784 | ATP-dependent RNA helicase, superfamily II | chromosome | CDS | 906689 | 1125 | - | 0.344 | |
CAC0900 | Possible Zn-finger containing protein | chromosome | CDS | 1029757 | 627 | - | 0.285486 | |
CAC0934 | Hypothetical protein | chromosome | CDS | 1075823 | 357 | - | 0.291317 | |
CAC0945 | Single-stranded DNA-binding protein | chromosome | CDS | 1085192 | 333 | + | 0.303303 | |
CAC0978 | Possible elongation subunit of DNA-dependent DNA polymerase | chromosome | CDS | 1126012 | 825 | + | 0.255758 | |
CAC1003 | Superfamily I DNA helicase (rep-like helicase) | chromosome | CDS | 1150264 | 2199 | + | 0.290587 | |
CAC1006 | MutT-like (Nudix) hydrolase | chromosome | CDS | 1154207 | 441 | - | 0.306122 | |
CAC1097 | Hypothetical protein | chromosome | CDS | 1265336 | 651 | - | 0.274962 | |
CAC1098 | DNA polymerase I, polA | chromosome | CDS | 1266368 | 2616 | + | 0.309633 | |
CAC1109 | Hypothetical protein, CF-8 family | chromosome | CDS | 1275458 | 264 | - | 0.268939 | |
CAC1110 | Integrase/recombinase (xerC/xerD family); CF-10 family | chromosome | CDS | 1275725 | 1023 | - | 0.301075 | |
CAC1132 | Hypothetical protein | chromosome | CDS | 1296337 | 1467 | - | 0.291752 | |
CAC1142 | ATP-dependent DNA helicase, uvrD-like | chromosome | CDS | 1307375 | 1830 | - | 0.26612 | |
CAC1143 | Exodeoxyribonuclease V, Alpha subunit, RecD | chromosome | CDS | 1309267 | 2181 | - | 0.253553 | |
CAC1153 | Hypothetical protein | chromosome | CDS | 1318341 | 252 | + | 0.222222 | |
CAC1155 | Hypothetical protein | chromosome | CDS | 1319107 | 1116 | + | 0.281362 | |
CAC1170 | Integrase/recombinase (xerD/xerC family) | chromosome | CDS | 1327295 | 900 | + | 0.26 | |
CAC1172 | Predicted integrase of XerC/XerD family, diverged | chromosome | CDS | 1328803 | 870 | + | 0.281609 | |
CAC1175 | Hypothetical protein, CF-35 family | chromosome | CDS | 1330513 | 384 | + | 0.283854 | |
CAC1182 | Phage related protein, YorG B.subtilis homolog | chromosome | CDS | 1333603 | 1056 | + | 0.295455 | |
CAC1185 | Hypothetical protein | chromosome | CDS | 1335834 | 1497 | + | 0.247161 | |
CAC1192 | Phage replicative DNA helicase, YorI B.subtilis homolog | chromosome | CDS | 1341163 | 1470 | + | 0.285714 | |
CAC1195 | DNA ligase (NAD dependent), LigA | chromosome | CDS | 1343492 | 1992 | + | 0.291667 | |
CAC1197 | Phage toprim domain containing protein, YorJ B.subtilis homolog | chromosome | CDS | 1345743 | 1047 | + | 0.298949 | |
CAC1198 | Single-stranded-DNA-specific exonuclease (recJ) | chromosome | CDS | 1346771 | 1647 | + | 0.275046 | |
CAC1222 | DNA-methyltransferase (cytosine-specific) | chromosome | CDS | 1363692 | 945 | + | 0.331217 | |
CAC1223 | DNA Polymerase III Alpha chain (dnaE) | chromosome | CDS | 1364934 | 3339 | + | 0.280024 | |
CAC1228 | Site-specific DNA recombinase | chromosome | CDS | 1370501 | 1635 | + | 0.292355 | |
CAC1241 | RadC protein ortholog | chromosome | CDS | 1381336 | 690 | + | 0.308696 | |
CAC1268 | Competence ComEA protein | chromosome | CDS | 1410899 | 630 | + | 0.306349 | |
CAC1273 | Uncharacterized protein, YQEN B.subtilis homolog | chromosome | CDS | 1416308 | 1032 | + | 0.283915 | |
CAC1299 | DNA primase, DNAG | chromosome | CDS | 1441801 | 1791 | + | 0.302066 | |
CAC1309 | Hypothetical protein | chromosome | CDS | 1439080 | 657 | + | 0.304414 | |
CAC1310 | Integrase XerD family protein (similarity only with C-term. part | chromosome | CDS | 1453279 | 495 | - | 0.260606 | |
CAC1397 | Predicted hydrolase of PHP superfamily | chromosome | CDS | 1541930 | 759 | + | 0.304348 | |
CAC1464 | UVRA-like protein, probably involved in MDR transport | chromosome | CDS | 1613639 | 2268 | + | 0.318342 | |
CAC1493 | Zn-finger DNA-binding domain | chromosome | CDS | 1639076 | 429 | + | 0.310023 | |
CAC1494 | Hypothetical protein, CF-32 family | chromosome | CDS | 1639486 | 615 | + | 0.291057 | |
CAC1499 | A/G-specific DNA glycosylase | chromosome | CDS | 1643658 | 648 | + | 0.260802 | |
CAC1501 | DNA-methyltransferase (cytosine-specific), ortholog of BSP6I Bsubtilis | chromosome | CDS | 1644888 | 1248 | + | 0.293269 | |
CAC1580 | Hypothetical protein | chromosome | CDS | 1724134 | 702 | + | 0.292023 | |
CAC1595 | Integrase/recombinase, XerC/XerD family | chromosome | CDS | 1739400 | 561 | + | 0.306595 | |
CAC1609 | Zn-finger containing protein | chromosome | CDS | 1750942 | 375 | - | 0.304 | |
CAC1627 | DNA gyrase B subunit | chromosome | CDS | 1766134 | 1953 | + | 0.33999 | |
CAC1628 | DNA gyrase A subunit | chromosome | CDS | 1768107 | 2865 | + | 0.31274 | |
CAC1632 | Endonuclease IV | chromosome | CDS | 1773900 | 819 | - | 0.315018 | |
CAC1639 | Hypothetical protein, CF-7 family | chromosome | CDS | 1779297 | 900 | + | 0.382222 | |
CAC1671 | Predicted ATPase related to the helicase subunit of the Holliday junction resolvase | chromosome | CDS | 1814785 | 1266 | + | 0.340442 | |
CAC1672 | Rad3-related DNA helicase | chromosome | CDS | 1816050 | 2376 | + | 0.309764 | |
CAC1680 | Predicted endonuclease involved in recombination | chromosome | CDS | 1830097 | 408 | + | 0.323529 | |
CAC1721 | Primosomal protein N', superfamily II helicase | chromosome | CDS | 1869329 | 2202 | + | 0.313352 | |
CAC1736 | RecG helicase | chromosome | CDS | 1883855 | 2037 | + | 0.308297 | |
CAC1737 | N6-adenine-specific methylase | chromosome | CDS | 1885969 | 567 | + | 0.329806 | |
CAC1762 | Ribonuclease HII | chromosome | CDS | 1907294 | 765 | + | 0.322876 | |
CAC1763 | Predicted endonuclease | chromosome | CDS | 1908109 | 369 | - | 0.287263 | |
CAC1784 | DNA uptake protein | chromosome | CDS | 1933037 | 1065 | + | 0.286385 | |
CAC1785 | Topoisomerase I | chromosome | CDS | 1934132 | 2094 | + | 0.315664 | |
CAC1815 | RECA recombinase, ATPase | chromosome | CDS | 1965171 | 1050 | + | 0.33619 | |
CAC1836 | DNA mismatch repair enzyme, MutL | chromosome | CDS | 1986587 | 1869 | - | 0.302836 | |
CAC1837 | Mismatch repair protein MutS, ATPase | chromosome | CDS | 1988474 | 2610 | - | 0.309579 | |
CAC1854 | Nudix (MutT) family hydrolase | chromosome | CDS | 2006251 | 519 | + | 0.304432 | |
CAC1865 | Site-specific recombinases, DNA invertase Pin homolog | chromosome | CDS | 2014259 | 1581 | + | 0.296648 | |
CAC1872 | Replication initiation protein REP | chromosome | CDS | 2019495 | 1089 | + | 0.30303 | |
CAC1874 | Hypothetical protein | chromosome | CDS | 2020841 | 1035 | - | 0.274396 | |
CAC1880 | Hypothetical protein, CF-35 family | chromosome | CDS | 2028559 | 375 | - | 0.242667 | |
CAC1896 | Phage terminase-like protein, small subunit | chromosome | CDS | 2044051 | 456 | - | 0.322368 | |
CAC1919 | Phage related SSB-like protein | chromosome | CDS | 2053592 | 402 | - | 0.363184 | |
CAC1920 | Zn-finger containing protein | chromosome | CDS | 2053998 | 183 | - | 0.322404 | |
CAC1933 | DNA replication protein DnaC | chromosome | CDS | 2058383 | 849 | - | 0.336867 | |
CAC1951 | Site-specific recombinases, DNA invertase Pin homolog | chromosome | CDS | 2068045 | 1728 | + | 0.293403 | |
CAC1956 | Site-specific recombinases, DNA invertase Pin homolog | chromosome | CDS | 2072361 | 1596 | + | 0.27193 | |
CAC2044 | Hypothetical protein | chromosome | CDS | 2150270 | 729 | - | 0.260631 | |
CAC2066 | Integrase/recombinase XerD family | chromosome | CDS | 2170033 | 879 | - | 0.293515 | |
CAC2073 | DNA repair protein recN, ATPase | chromosome | CDS | 2175203 | 1713 | - | 0.298891 | |
CAC2081 | Exonuclease VII small subunit | chromosome | CDS | 2183043 | 234 | - | 0.307692 | |
CAC2082 | Exonuclease VII, large subunit | chromosome | CDS | 2183305 | 1200 | - | 0.305833 | |
CAC2204 | Hypothetical protein | chromosome | CDS | 2297859 | 345 | - | 0.278261 | |
CAC2213 | Hypothetical protein | chromosome | CDS | 2305156 | 408 | - | 0.286765 | |
CAC2225 | Uncharacterized conserved protein | chromosome | CDS | 2314644 | 1932 | - | 0.319358 | |
CAC2232 | SsDNA Exonuclease, RecJ | chromosome | CDS | 2324966 | 1764 | - | 0.29195 | |
CAC2247 | Site-specific recombinase, DNA invertase Pin homolog | chromosome | CDS | 2341792 | 1572 | - | 0.277354 | |
CAC2262 | ATP-dependent exonuclease (exonuclease V) synthesis protein AddA (helicase and exonuclease domains) | chromosome | CDS | 2360780 | 3759 | - | 0.300878 | |
CAC2263 | ATP-dependent exonuclease synthesis protein AddB (superfamily I helicase) | chromosome | CDS | 2364519 | 3462 | - | 0.303004 | |
CAC2276 | Protein related to N-terminal domain of SS-DNA-specific exonuclease RecJ | chromosome | CDS | 2379140 | 870 | - | 0.297701 | |
CAC2284 | Holliday junction specific DNA helicase, subunit ruvB | chromosome | CDS | 2387336 | 1050 | - | 0.330476 | |
CAC2285 | Holliday junction specific DNA helicase, subunit ruvA | chromosome | CDS | 2388398 | 606 | - | 0.29868 | |
CAC2340 | DNA mismatch repair protein mutS, YSHD B.subtilis ortholog | chromosome | CDS | 2448638 | 2367 | - | 0.347275 | |
CAC2382 | Single-strand DNA-binding protein, ssb | chromosome | CDS | 2491062 | 690 | - | 0.32029 | |
CAC2400 | Serine/threonine kinase related protein, inactivated (HRDL motif absent) (fragment) | chromosome | CDS | 2511267 | 534 | + | 0.290262 | |
CAC2403 | Predicted membrane protein | chromosome | CDS | 2516820 | 4455 | - | 0.283277 | |
CAC2550 | Hypothetical protein | chromosome | CDS | 2658508 | 963 | - | 0.274143 | |
CAC2673 | NAD-dependent DNA ligase | chromosome | CDS | 2789552 | 2010 | - | 0.316915 | |
CAC2674 | ATP-dependent superfamily I DNA helicase, PCRA | chromosome | CDS | 2791594 | 2271 | - | 0.316601 | |
CAC2687 | RecQ protein, superfamily II DNA helicase | chromosome | CDS | 2808658 | 2145 | + | 0.302564 | |
CAC2707 | 8-oxoguanine-DNA-glycosylase | chromosome | CDS | 2830783 | 879 | - | 0.31058 | |
CAC2731 | Predicted permease | chromosome | CDS | 2855353 | 2628 | - | 0.286149 | |
CAC2736 | ATPase involved in DNA repair | chromosome | CDS | 2861388 | 3492 | - | 0.298396 | |
CAC2737 | DNA repair exonuclease | chromosome | CDS | 2864860 | 1227 | - | 0.339853 | |
CAC2748 | ATP dependent RNA helicase DeaD, superfamily II | chromosome | CDS | 2877184 | 1446 | - | 0.324343 | |
CAC2813 | Predicted integrase of XerC/XerD family | chromosome | CDS | 2943896 | 189 | - | 0.354497 | |
CAC2824 | N-terminal HKD family nuclease fused to DNA/RNA helicases of superfamily II,conserved in Streptomyces | chromosome | CDS | 2954604 | 2481 | - | 0.294236 | |
CAC2828 | Nudix (MutT) family hydrolase/pyrophosphatase | chromosome | CDS | 2959363 | 387 | - | 0.354005 | |
CAC2853 | Hypothetical protein | chromosome | CDS | 2986097 | 1008 | - | 0.265873 | |
CAC2854 | ATP-dependent exoDNAse (exonuclease V), alpha subunit, RecD | chromosome | CDS | 2987112 | 2220 | - | 0.315315 | |
CAC2900 | Spore photoproduct lyase, SPL related protein | chromosome | CDS | 3033758 | 1044 | - | 0.246169 | |
CAC2947 | Topoisomerase B | chromosome | CDS | 3079332 | 2187 | - | 0.33562 | |
CAC2969 | 3-methyladenine DNA glycosylase | chromosome | CDS | 3104266 | 618 | - | 0.34466 | |
CAC2987 | Primase-like protein, containing TOPRIM domain, YABF B.subtilis ortholog | chromosome | CDS | 3124012 | 558 | - | 0.322581 | |
CAC2989 | PHP superfamily hydrolase, YABD ortholog | chromosome | CDS | 3126129 | 762 | - | 0.309711 | |
CAC2996 | Superfamily II DNA/RNA helicase, SNF2 family | chromosome | CDS | 3133673 | 3159 | - | 0.281102 | |
CAC2997 | Uracil-DNA glycosylase | chromosome | CDS | 3136846 | 621 | - | 0.36876 | |
CAC3010 | ATP-dependent RNA helicase (superfamily II), YDBR B.subtilis ortholog | chromosome | CDS | 3149865 | 1587 | - | 0.300567 | |
CAC3034 | MutS-like mismatch repair protein, ATPases | chromosome | CDS | 3176362 | 1797 | - | 0.28325 | |
CAC3036 | Superfamily I DNA helicase | chromosome | CDS | 3179380 | 4056 | - | 0.311884 | |
CAC3211 | DNA binding protein HU | chromosome | CDS | 3356792 | 276 | - | 0.307971 | |
CAC3216 | Transcription-repair coupling factor, MFD (superfamily II helicase ) | chromosome | CDS | 3362265 | 3516 | - | 0.317691 | |
CAC3248 | Hypothetical protein | chromosome | CDS | 3400720 | 384 | - | 0.294271 | |
CAC3261 | Methylated DNA-protein cysteine methyltransferase | chromosome | CDS | 3411736 | 468 | - | 0.346154 | |
CAC3303 | Superfamily II DNA/RNA helicases, SNF2 family | chromosome | CDS | 3469203 | 3234 | - | 0.311379 | |
CAC3358 | Site-specific DNA methylase dam | chromosome | CDS | 3536309 | 846 | - | 0.289598 | |
CAC3366 | Hypothetical protein | chromosome | CDS | 3543132 | 327 | - | 0.238532 | |
CAC3396 | Nudix (MutT) family hydrolase, C4-type Zn-finger domain containing | chromosome | CDS | 3579835 | 816 | - | 0.333333 | |
CAC3441 | DNA/RNA helicase, SNF2 | chromosome | CDS | 3631171 | 2850 | - | 0.292632 | |
CAC3442 | DNA polymerase III (alpha subunit) | chromosome | CDS | 3634208 | 4359 | - | 0.351916 | |
CAC3468 | Excinuclease ABC, subunit C (uvrC) | chromosome | CDS | 3666507 | 1122 | - | 0.289661 | |
CAC3490 | DNA gyrase inhibitory protein, GyrI | chromosome | CDS | 3687344 | 456 | - | 0.302632 | |
CAC3492 | Uncharacterized conserved protein | chromosome | CDS | 3688741 | 873 | - | 0.294387 | |
CAC3514 | Reverse transcriptase/maturase family protein | chromosome | CDS | 3711002 | 1413 | - | 0.326256 | |
CAC3531 | IS605/IS200-like transposase | chromosome | CDS | 3726188 | 474 | - | 0.293249 | |
CAC3534 | Site-specific modification DNA-methyltransferase | chromosome | CDS | 3727453 | 1716 | - | 0.297786 | |
CAC3548 | Uncharacterized conserved Zn-finger containing protein | chromosome | CDS | 3744073 | 192 | - | 0.359375 | |
CAC3563 | Mismatch repair protein MutS-like ATPase | chromosome | CDS | 3761256 | 1734 | - | 0.299308 | |
CAC3567 | Topoisomerase B | chromosome | CDS | 3766674 | 2130 | - | 0.339437 | |
CAC3587 | DNA replication protein DnaD | chromosome | CDS | 3787138 | 987 | + | 0.303951 | |
CAC3588 | DNA replication protein DnaC | chromosome | CDS | 3788111 | 990 | + | 0.261616 | |
CAC3601 | Nudix (MutT) family hydrolase | chromosome | CDS | 3802864 | 609 | + | 0.343186 | |
CAC3715 | Replicative DNA helicase, DNAC | chromosome | CDS | 3920086 | 1329 | - | 0.362679 | |
CAC3723 | Single strand DNA binding protein, SSB | chromosome | CDS | 3928639 | 435 | - | 0.347126 |