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2024-05-06 00:37:00

Gene list

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COG category: Replication, recombination and repair
Organism: Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, Hildenborough

Number of genes found: 146

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Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, Hildenborough
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA DVU2004 ISDvu4, transposasechromosome CDS2086357 1050 + 0.585714
NA DVU2973 integration host factor, beta subunitchromosome CDS3082212 276 - 0.583333
NA DVU1515 type II DNA modification methyltransferase, putativechromosome CDS1585461 1464 - 0.601093
NA DVU2702 conserved hypothetical proteinchromosome CDS2809844 282 + 0.609929
NA DVU3088 ATP-dependent RNA helicase, DEAD/DEAH box familychromosome CDS3229894 1734 + 0.6609
NA DVU1855 integrase, truncationchromosome CDS1922796 321 + 0.588785
NA DVU0791 methylated-DNA--protein-cysteine methyltransferase, DNA-binding domain proteinchromosome CDS877891 486 + 0.676955
NA DVU1787 nuclease domain proteinchromosome CDS1850148 627 - 0.60925
NA DVU3203 DNA polymerase III, delta prime subunit, putativechromosome CDS3366263 918 - 0.696078
NA DVU0895 helicase, RecD/TraA familychromosome CDS986193 2229 + 0.637506
NA DVU0474 ISDvu4, transposasechromosome CDS540442 1050 - 0.585714
NA DVU2670 hypothetical proteinchromosome CDS2781072 264 + 0.587121
NA DVU1757 site-specific recombinase, phage integrase familychromosome CDS1821607 1122 - 0.606952
NA DVU0641 conserved hypothetical proteinchromosome CDS711092 1149 - 0.612707
NA DVU1864 DNA-binding protein HU, beta subunit, putativechromosome CDS1931333 282 + 0.531915
NA DVU0991 conserved hypothetical proteinchromosome CDS1085187 819 + 0.644689
NA DVU0479 serine/threonine protein kinase, putativechromosome CDS544595 1500 + 0.665333
NA DVU2011 ISD1, transposase OrfAchromosome CDS2089964 267 - 0.498127
NA DVU1098 adenine specific DNA methyltransferase, putativechromosome CDS1204238 744 - 0.634409
NA DVU1654 site-specific recombinase, phage integrase familychromosome CDS1735437 885 - 0.618079
NA DVUA0019 type II DNA modification methyltransferase, putativepDV CDS22786 1659 + 0.440024
NA DVU2024 conserved hypothetical proteinchromosome CDS2105239 1065 - 0.579343
NA DVU2179 ISDvu2, transposase OrfAchromosome CDS2278832 399 - 0.531328
NA DVU2879 conserved hypothetical proteinchromosome CDS2973642 1557 - 0.675658
NA DVU3310 ATP-dependent RNA helicase, DEAD/DEAH familychromosome CDS3486594 1599 + 0.676048
NA DVU1746 C-5 cytosine-specific DNA methylase family proteinchromosome CDS1812266 1110 + 0.581982
NA DVU3198 DNA polymerase III, gamma and tau subunits, putativechromosome CDS3360636 1851 + 0.671529
NA DVU2085 Snf2 family proteinchromosome CDS2172708 3168 + 0.614899
NA DVU2197 site-specific recombinase, phage integrase familychromosome CDS2292764 930 - 0.623656
NA DVU1478 hypothetical proteinchromosome CDS1557759 897 + 0.406912
NA DVU2069 DNA processing protein DprA, putativechromosome CDS2149978 1992 - 0.667169
NA DVU0070 Ser/Thr protein phosphatase family proteinchromosome CDS85666 1356 - 0.702065
NA DVU2623 hypothetical proteinchromosome CDS2743066 348 + 0.632184
NA DVU2828 site-specific recombinase, phage integrase familychromosome CDS2936472 1185 + 0.655696
NA DVU0719 ISDvu2, transposase OrfBchromosome CDS798456 843 + 0.550415
NA DVU1398 ISDvu2, transposase OrfBchromosome CDS1467022 843 - 0.550415
NA DVU3359 hypothetical proteinchromosome CDS3529990 420 - 0.578571
NA DVU0833 conserved hypothetical protein TIGR00252chromosome CDS923146 405 - 0.651852
NA DVU2338 DNA repair protein, HhH-GPD familychromosome CDS2434492 681 - 0.650514
NA DVU0112 deoxyribodipyrimidine photolyase, putativechromosome CDS145051 1425 + 0.681404
NA DVU2688 bacteriophage transposase A proteinchromosome CDS2801478 2043 + 0.676946
NA DVUA0133 CRISPR-associated protein Cas4pDV CDS173771 639 + 0.619718
NA DVU2030 ISDvu2, transposase OrfBchromosome CDS2111835 843 + 0.550415
NA DVU0562 ISD1, transposase OrfAchromosome CDS628388 267 + 0.498127
NA DVU3309 endo/excinuclease amino terminal domain proteinchromosome CDS3486274 333 + 0.645646
NA DVU2842 type II DNA modification methyltransferase, putativechromosome CDS2946324 1077 + 0.571959
NA DVU1738 site-specific recombinase, phage integrase familychromosome CDS1806786 645 - 0.669767
NA DVU2878 adenine specific DNA methyltransferase, putativechromosome CDS2972157 1359 - 0.629875
NA DVU1399 ISDvu2, transposase OrfAchromosome CDS1467861 399 - 0.531328
NA DVU2178 ISDvu2, transposase OrfBchromosome CDS2277993 843 - 0.550415
NA DVU0192 adenine specific DNA methyltransferase, putativechromosome CDS237390 1359 + 0.627667
NA DVU1527 site-specific recombinase, phage integrase familychromosome CDS1594709 1194 - 0.607203
NA DVU1531 methyltransferase, putativechromosome CDS1599751 573 + 0.65096
NA DVU1481 nuclease domain proteinchromosome CDS1560130 810 - 0.588889
NA DVU0762 conserved hypothetical proteinchromosome CDS853114 471 - 0.641189
NA DVU2063 conserved hypothetical proteinchromosome CDS2141691 2955 + 0.664636
NA DVU0236 site-specific recombinase, phage integrase familychromosome CDS269283 1143 - 0.601925
NA DVU2843 DNA mismatch endonuclease Vsr, putativechromosome CDS2947409 411 + 0.557178
NA DVU0990 endonuclease III, putativechromosome CDS1084333 858 + 0.675991
NA DVU3144 cytochrome c family proteinchromosome CDS3293742 1629 + 0.635359
NA DVUA0004 DNA-binding protein HU, putativepDV CDS5490 354 + 0.641243
NA DVU0556 ISDvu3, transposase OrfAchromosome CDS624615 264 + 0.541667
NA DVU0453 ATP-dependent DNA helicase, UvrD/REP familychromosome CDS519540 3213 + 0.671335
NA DVU2213 nuclease domain proteinchromosome CDS2310270 702 + 0.638177
NA DVU2029 ISDvu2, transposase OrfAchromosome CDS2111440 399 + 0.531328
NA DVU3070 conserved hypothetical proteinchromosome CDS3209898 429 - 0.643357
NA DVU2459 hypothetical proteinchromosome CDS2565033 450 + 0.58
NA DVU1479 conserved hypothetical proteinchromosome CDS1558664 1008 + 0.474206
NA DVU0443 exonulcease, putativechromosome CDS501196 735 - 0.691156
NA DVU0563 ISD1, transposase OrfBchromosome CDS628675 825 + 0.535758
NA DVU1747 ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain proteinchromosome CDS1813416 2946 + 0.533265
NA DVUA0082 site-specific recombinase, phage integrase familypDV CDS109666 1032 - 0.646318
NA DVU2066 site-specific recombinase, phage integrase familychromosome CDS2146192 1425 - 0.651228
NA DVU1448 conserved hypothetical proteinchromosome CDS1527231 1137 - 0.599824
NA DVU1504 terminase, small subunitchromosome CDS1579915 468 - 0.583333
NA DVU2017 ISDvu5, transposasechromosome CDS2094689 1242 - 0.595813
NA DVU2062 ATP-dependent DNA helicase, UvrD/REP familychromosome CDS2138236 3459 + 0.658283
NA DVU2003 transposase, IS5 family, truncationchromosome CDS2084977 1263 - 0.561362
NA DVU3202 hydrolase, TatD familychromosome CDS3365112 837 + 0.658303
NA DVU1790 MutS2 family proteinchromosome CDS1854518 2316 - 0.630829
NA DVU1082 3'-5' exonuclease domain proteinchromosome CDS1186345 609 + 0.612479
NA DVUA0135 CRISPR-associated protein Cas2pDV CDS175411 309 + 0.546926
NA DVU0718 ISDvu2, transposase OrfAchromosome CDS798061 399 + 0.531328
NA DVU1140 bacteriophage transposase A protein, putativechromosome CDS1235666 2154 - 0.668988
NA DVU0483 DNA mismatch repair protein MutL, putativechromosome CDS549943 2235 - 0.684116
NA DVU2007 nuclease, putativechromosome CDS2087978 417 - 0.494005
NA DVU0156 ATP-dependent DNA helicase, UvrD/REP familychromosome CDS192240 2160 + 0.665278
NA DVU0191 conserved hypothetical proteinchromosome CDS235704 1560 + 0.680128
NA DVU1686 ATPase, AAA familychromosome CDS1764863 1236 + 0.61165
NA DVU0584 transposase, putativechromosome CDS649275 939 + 0.645367
NA DVU2733 adenine specific DNA methyltransferase, putativechromosome CDS2833587 750 + 0.636
NA DVU1899 DNA repair protein RecO, putativechromosome CDS1973502 756 - 0.616402
NA DVU1130 DNA-binding proteinchromosome CDS1231221 465 - 0.645161
NA DVU2172 hypothetical proteinchromosome CDS2269777 222 - 0.608108
NA DVU2010 ISD1, transposase OrfBchromosome CDS2089119 825 - 0.539394
NA DVUA0132 CRISPR-associated protein, TM1801 familypDV CDS172897 873 + 0.609393
ISDvu5 DVU_IS10 chromosome repeat_region2094689 1242 - 0.595813
cas1 DVUA0134 CRISPR-associated protein Cas1pDV CDS174393 1032 + 0.629845
dinP DVU0071 DNA polymerase IVchromosome CDS87539 1161 + 0.684755
dnaA-1 DVU0001 chromosomal replication initiator protein DnaAchromosome CDS151 1314 + 0.625571
dnaA-2 DVU2252 chromosomal replication initiator protein DnaAchromosome CDS2347717 1476 - 0.627371
dnaB DVU0959 replicative DNA helicasechromosome CDS1052516 1482 + 0.608637
dnaE DVU1353 DNA polymerase III, alpha subunitchromosome CDS1430903 3495 - 0.616595
dnaG DVU1789 DNA primasechromosome CDS1852767 1719 - 0.604421
dnaN DVU0002 DNA polymerase III, beta subunitchromosome CDS1610 1155 + 0.594805
gyrA DVU0004 DNA gyrase, A subunitchromosome CDS5262 2571 + 0.630105
gyrB DVU0003 DNA gyrase, B subunitchromosome CDS2766 2397 + 0.630371
hrpB DVU1543 ATP-dependent helicase HrpBchromosome CDS1608966 2544 + 0.652123
hup-1 DVU0396 DNA-binding protein HUchromosome CDS444438 288 + 0.579861
hup-2 DVU0764 DNA-binding protein HUchromosome CDS854737 276 + 0.641304
hup-3 DVU1795 DNA-binding protein HUchromosome CDS1857939 273 - 0.600733
hup-4 DVU3187 DNA-binding protein HUchromosome CDS3347046 288 + 0.621528
hupB DVU1134 DNA-binding protein HU, beta subunitchromosome CDS1233044 288 - 0.673611
idi DVU1679 isopentenyl-diphosphate delta-isomerasechromosome CDS1757573 537 + 0.616387
ligA DVU1608 DNA ligase, NAD-dependentchromosome CDS1690678 2400 + 0.642083
mfd DVU1903 transcription-repair coupling factorchromosome CDS1977379 3483 - 0.638817
mutM DVU3256 formamidopyrimidine-DNA glycosylasechromosome CDS3428191 1098 + 0.669399
mutS DVU1649 DNA mismatch repair protein MutSchromosome CDS1727737 2718 - 0.626932
mutT DVU3051 mutator mutT proteinchromosome CDS3176498 390 - 0.689744
mutY DVU0282 A/G-specific adenine glycosylasechromosome CDS327314 1122 - 0.641711
nfo DVU1224 endonuclease IVchromosome CDS1315670 849 + 0.645465
polA DVU0496 DNA polymerase Ichromosome CDS565280 3048 - 0.674213
priA DVU1284 primosomal protein n'chromosome CDS1376876 2379 + 0.614124
radC DVU1193 DNA repair protein RadCchromosome CDS1284798 678 - 0.617994
recA DVU1090 recA proteinchromosome CDS1194497 1074 - 0.631285
recJ DVU0904 single-stranded-DNA-specific exonuclease RecJchromosome CDS995665 1716 + 0.653846
recN DVU2463 DNA repair protein RecNchromosome CDS2568549 1620 + 0.644444
recR DVU3200 recombination protein RecRchromosome CDS3362805 606 + 0.663366
rhlE DVU1982 ATP-dependent RNA helicase RhlEchromosome CDS2058879 1389 - 0.680346
rnhA DVU0689 ribonuclease HIchromosome CDS763517 471 + 0.641189
rnhB DVU0834 ribonuclease HIIchromosome CDS923544 663 - 0.669683
ruvA DVU2256 Holliday junction DNA helicase RuvAchromosome CDS2351230 609 - 0.65353
ruvB DVU2255 Holliday junction DNA helicase RuvBchromosome CDS2350267 963 - 0.650052
ruvC DVU2258 crossover junction endodeoxyribonuclease RuvCchromosome CDS2352212 501 - 0.670659
ssb DVU2222 single-strand binding proteinchromosome CDS2314982 531 - 0.634652
tag DVU0356 DNA-3-methyladenine glycosylase Ichromosome CDS405472 576 + 0.652778
topA DVU3389 DNA topoisomerase Ichromosome CDS3563643 2283 + 0.645642
topB DVU2316 DNA topoisomerase IIIchromosome CDS2408456 2589 + 0.658942
umuC DVU2906 umuC proteinchromosome CDS3007579 1404 - 0.681624
ung DVU0393 uracil-DNA glycosylasechromosome CDS441764 738 + 0.659892
uvrA DVU1987 excinuclease ABC, A subunitchromosome CDS2065139 2871 - 0.638802
uvrB DVU1605 excinuclease ABC, B subunitchromosome CDS1686795 2034 + 0.621436
uvrC DVU0801 excinuclease ABC, C subunitchromosome CDS886202 2109 + 0.646278
xseA DVU1346 exodeoxyribonuclease VII, large subunitchromosome CDS1424092 1398 + 0.65236
xseB DVU1348 exodeoxyribonuclease VII, small subunitchromosome CDS1426444 246 + 0.630081
xth DVU3259 exodeoxyribonuclease IIIchromosome CDS3434823 774 + 0.643411