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2024-05-05 04:37:46

Gene list

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COG category: Replication, recombination and repair
Organism: Methylococcus capsulatus str. Bath, Bath

Number of genes found: 168

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Methylococcus capsulatus str. Bath, Bath
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA MCA3005 ATP-dependent RNA helicase, DEAD/DEAH box familychromosome CDS3182749 3639 + 0.663369
NA MCA0096 ISMca1, transposasechromosome CDS102004 1101 + 0.641235
NA MCA1755 hypothetical proteinchromosome CDS1876078 543 - 0.60221
NA MCA0184 conserved hypothetical protein TIGR00252chromosome CDS195700 372 - 0.672043
NA MCA1714 surface protein-related proteinchromosome CDS1830058 570 - 0.619298
NA MCA0474 ATP-dependent DNA helicase, UvrD/REP familychromosome CDS491565 4410 - 0.638322
NA MCA3029 hypothetical proteinchromosome CDS3214477 441 + 0.632653
NA MCA1482 ATP-dependent helicase HrpAchromosome CDS1576525 3885 - 0.637323
NA MCA2684 conserved domain proteinchromosome CDS2866650 3138 - 0.62747
NA MCA1109 2OG-Fe(II) oxygenase family domain proteinchromosome CDS1164359 426 + 0.666667
NA MCA0723 ISMca1, transposasechromosome CDS761422 1101 - 0.641235
NA MCA0282 ISMca2, transposase, OrfAchromosome CDS268287 363 - 0.658402
NA MCA2689 prophage LambdaMc01, ISMca4, transposase, OrfABchromosome CDS2875925 1089 - 0.598714
NA MCA0281 ISMca2, transposase, OrfBchromosome CDS267415 876 - 0.66895
NA MCA2165 conserved hypothetical proteinchromosome CDS2337964 1479 - 0.731575
NA MCA1477 conserved hypothetical protein TIGR00052chromosome CDS1570515 603 - 0.636816
NA MCA1620 ISMca4, transposase, OrfABchromosome CDS1726574 1089 - 0.599633
NA MCA1574 ATP-dependent RNA helicase, DEAD/DEAH box familychromosome CDS1671149 1500 + 0.635333
NA MCA1956 ISMca1, transposasechromosome CDS2107542 1101 - 0.641235
NA MCA1312 ISMca1, transposasechromosome CDS1401714 1101 + 0.641235
NA MCA2739 hypothetical proteinchromosome CDS2930977 1029 - 0.642371
NA MCA0877 exonucleasechromosome CDS924243 579 - 0.607945
NA MCA3028 hypothetical proteinchromosome CDS3213738 627 + 0.61882
NA MCA2276 phage SPO1 DNA polymerase-related proteinchromosome CDS2472051 732 + 0.655738
NA MCA3008 conserved hypothetical proteinchromosome CDS3186991 3039 + 0.66897
NA MCA2166 conserved hypothetical proteinchromosome CDS2339450 624 - 0.733974
NA MCA0333 MutT/nudix family proteinchromosome CDS328446 570 + 0.631579
NA MCA0887 ISMca7, transposasechromosome CDS932446 951 - 0.633018
NA MCA1197 ISMca1, transposasechromosome CDS1255502 1101 + 0.641235
NA MCA0729 conserved domain proteinchromosome CDS765941 1725 - 0.571594
NA MCA0650 CRISPR-associated protein Cas2chromosome CDS684633 291 - 0.532646
NA MCA0735 ISMca3, transposase, OrfBchromosome CDS775711 849 - 0.646643
NA MCA0031 ISMca6, transposase, OrfAchromosome CDS32445 540 + 0.644444
NA MCA1616 C-5 cytosine-specific DNA methylase family proteinchromosome CDS1723399 1038 + 0.580925
NA MCA2900 prophage MuMc02, DNA methyltransferasechromosome CDS3091049 798 - 0.626566
NA MCA1344 site-specific recombinase, phage integrase familychromosome CDS1427976 1077 - 0.610028
NA MCA2212 conserved hypothetical proteinchromosome CDS2387051 978 + 0.675869
NA MCA1618 putative DNA mismatch endonuclease Vsrchromosome CDS1725542 387 + 0.604651
NA MCA2098 putative DNA polymerase III, chi subunitchromosome CDS2257273 459 - 0.655773
NA MCA0050 ISMca1, transposasechromosome CDS50597 1101 - 0.641235
NA MCA0980 ISMca1, transposasechromosome CDS1024687 1101 - 0.641235
NA MCA0733 putative transposasechromosome CDS773003 690 + 0.595652
NA MCA0837 conserved hypothetical proteinchromosome CDS881348 621 + 0.587762
NA MCA2522 DnaA domain proteinchromosome CDS2698005 699 + 0.67525
NA MCA1090 ISMca1, transposasechromosome CDS1145041 1101 + 0.641235
NA MCA2086 MutT/nudix family proteinchromosome CDS2245711 576 - 0.642361
NA MCA0854 recombination-associated protein RdgCchromosome CDS902058 933 + 0.639871
NA MCA2335 conserved hypothetical protein TIGR00250chromosome CDS2530021 456 - 0.638158
NA MCA0676 site-specific recombinase, phage integrase familychromosome CDS709251 912 + 0.657895
NA MCA2810 ISMca1, transposasechromosome CDS3000394 1101 + 0.641235
NA MCA2942 putative prophage MuMc02, nucleasechromosome CDS3125852 651 - 0.576037
NA MCA0551 conserved hypothetical proteinchromosome CDS574465 2670 + 0.647191
NA MCA1993 deoxyribonuclease, TatD familychromosome CDS2143413 849 - 0.628975
NA MCA1782 ATPase, AAA familychromosome CDS1912107 1308 - 0.655963
NA MCA0593 protein phosphatase/kinase family proteinchromosome CDS623850 1788 - 0.686801
NA MCA1991 putative ATP-dependent helicasechromosome CDS2140889 1938 - 0.665635
NA MCA1177 ISMca1, transposasechromosome CDS1231615 1101 - 0.641235
NA MCA2964 ISMca1, transposasechromosome CDS3138767 1101 - 0.641235
NA MCA0654 CRISPR-associated protein, TM1801 familychromosome CDS686941 930 - 0.61828
NA MCA2511 ISMca1, transposasechromosome CDS2687316 1101 + 0.641235
NA MCA2682 prophage LambdaMc01, helicase, SNF2 familychromosome CDS2863366 2778 - 0.62059
NA MCA2634 prophage LambdaMc01, site-specific recombinase, resolvase familychromosome CDS2820020 1380 - 0.665942
NA MCA0307 ISMca1, transposasechromosome CDS303488 1101 + 0.641235
NA MCA2234 hypothetical proteinchromosome CDS2425624 723 - 0.607192
NA MCA2687 prophage LambdaMc01, ISMca1, transposasechromosome CDS2873899 1101 + 0.641235
NA MCA1514 ISMca1, transposasechromosome CDS1614981 1101 - 0.641235
NA MCA0045 endonuclease Vchromosome CDS45165 669 - 0.686099
NA MCA0907 ISMca2, transposase, OrfBchromosome CDS951252 876 + 0.66895
NA MCA1011 ATP-dependent RNA helicase, DEAD/DEAH box familychromosome CDS1060280 1362 + 0.668135
NA MCA0823 ISMca4, transposase, OrfABchromosome CDS866292 1089 + 0.601469
NA MCA1631 hypothetical proteinchromosome CDS1733495 837 + 0.67503
NA MCA2655 prophage LambdaMc01, DNA methyltransferasechromosome CDS2836007 1266 + 0.666667
NA MCA1580 ISMca1, transposasechromosome CDS1682645 1101 - 0.641235
NA MCA2955 putative prophage MuMc02, transposase protein Achromosome CDS3131611 2130 - 0.650235
NA MCA0730 hypothetical proteinchromosome CDS767646 2841 - 0.580781
NA MCA1895 ISMca3, transposase, OrfAchromosome CDS2041257 324 + 0.638889
NA MCA0651 CRISPR-associated protein Cas1chromosome CDS685018 1035 - 0.639614
NA MCA1630 DnaA domain proteinchromosome CDS1732160 1005 + 0.654726
NA MCA1642 transposase, IS3 family, truncationchromosome CDS1748848 207 + 0.642512
NA MCA0342 MutS family proteinchromosome CDS342615 1611 + 0.6437
NA MCA1709 transposase, IS3 family, OrfB, truncationchromosome CDS1825162 390 - 0.630769
NA MCA2556 ISMca1, transposasechromosome CDS2736454 1101 - 0.641235
NA MCA2178 ISMca1, transposasechromosome CDS2350003 1101 + 0.641235
NA MCA0641 site-specific recombinase, phage integrase family domain proteinchromosome CDS674950 171 + 0.596491
NA MCA1786 MutT/nudix family proteinchromosome CDS1916559 477 - 0.658281
NA MCA1341 conserved domain proteinchromosome CDS1426649 117 - 0.547009
NA MCA0027 ISMca5, transposasechromosome CDS28538 1236 - 0.644013
NA MCA0930 CRISPR-associated protein Cas1chromosome CDS972568 891 - 0.600449
NA MCA1615 site-specific recombinase, resolvase familychromosome CDS1722320 594 - 0.691919
NA MCA1219 ISMca5, transposasechromosome CDS1284430 1236 - 0.644013
NA MCA0906 ISMca2, transposase, OrfAchromosome CDS950923 333 + 0.678679
NA MCA1977 site-specific recombinase, phage integrase family, truncationchromosome CDS2128535 153 + 0.647059
NA MCA0032 ISMca6, transposase, OrfBchromosome CDS32956 594 + 0.624579
NA MCA2899 endonuclease IIIchromosome CDS3089704 642 + 0.658879
NA MCA0065 putative methyltransferasechromosome CDS67161 567 + 0.657848
NA MCA1610 ISMca6, transposase, OrfBchromosome CDS1718510 594 - 0.626263
NA MCA0767 putative competence protein ComEchromosome CDS807108 351 + 0.606838
NA MCA2841 putative DNA processing protein DprAchromosome CDS3032860 1095 - 0.679452
NA MCA2144 putative lipoproteinchromosome CDS2306347 510 - 0.660784
NA MCA1517 ISMca1, transposasechromosome CDS1619059 1101 + 0.641235
NA MCA1611 ISMca6, transposase, OrfAchromosome CDS1719075 540 - 0.646296
NA MCA1593 Staphylococcal nuclease homologuechromosome CDS1699023 591 - 0.659898
NA MCA2654 prophage LambdaMc01, DNA methyltransferasechromosome CDS2834667 1344 + 0.678571
NA MCA1896 ISMca3, transposase, OrfBchromosome CDS2041637 849 + 0.646643
NA MCA2164 putative DNA polymerase III, alpha subunitchromosome CDS2334837 3144 - 0.687023
NA MCA0227 ISMca1, transposasechromosome CDS223963 1101 + 0.641235
cas4 MCA0652 CRISPR-associated protein Cas4chromosome CDS686049 633 - 0.620853
dnaA MCA3033 chromosomal replication initiator protein DnaAchromosome CDS3219779 1329 - 0.586155
dnaB MCA1735 replicative DNA helicasechromosome CDS1851288 1386 - 0.621212
dnaE MCA1286 DNA polymerase III, alpha subunitchromosome CDS1369778 3498 + 0.634077
dnaG MCA2993 DNA primasechromosome CDS3164997 1716 + 0.614802
dnaN MCA3032 DNA polymerase III, beta subunitchromosome CDS3218647 1101 - 0.597638
dnaQ MCA0720 DNA polymerase III, epsilon subunitchromosome CDS759892 804 + 0.644279
dnaZX MCA1328 DNA polymerase III, gamma and tau subunitschromosome CDS1415031 1644 - 0.653893
fis MCA1746 DNA-binding protein Fischromosome CDS1862532 291 + 0.597938
gyrA MCA1421 DNA gyrase, A subunitchromosome CDS1507243 2583 - 0.636469
gyrB MCA3030 DNA gyrase, B subunitchromosome CDS3214959 2415 - 0.608282
hepA MCA2531 RNA polymerase-associated protein HepAchromosome CDS2705323 2850 + 0.652632
holA MCA1451 DNA polymerase III, delta subunitchromosome CDS1541635 1005 - 0.645771
holB MCA1995 DNA polymerase III, delta prime subunitchromosome CDS2144583 1008 - 0.654762
hup MCA2947 prophage MuMc02, DNA-binding protein HUchromosome CDS3128090 288 - 0.625
hupB MCA0532 DNA-binding protein HU-betachromosome CDS548430 273 + 0.564103
ihfA MCA0699 integration host factor, alpha subunitchromosome CDS735783 333 + 0.588589
ihfB MCA1411 integration host factor, beta subunitchromosome CDS1498297 288 - 0.576389
ligA MCA2438 DNA ligase, NAD-dependentchromosome CDS2616921 2022 - 0.644906
mfd MCA1864 transcription-repair coupling factorchromosome CDS2002683 3444 + 0.639954
mutL MCA1692 DNA mismatch repair protein MutLchromosome CDS1809803 1836 - 0.665577
mutM MCA3072 formamidopyrimidine-DNA glycosylasechromosome CDS3256070 816 - 0.650735
mutS MCA0576 DNA mismatch repair protein MutSchromosome CDS605298 2565 - 0.671735
mutY MCA0857 A/G-specific adenine glycosylasechromosome CDS904474 1062 - 0.666667
ogt MCA0584 methylated-DNA--protein-cysteinemethyltransferasechromosome CDS611168 561 + 0.693405
parC MCA0821 DNA topoisomerase IV, A subunitchromosome CDS863813 2235 + 0.665324
parE MCA0820 DNA topoisomerase IV, B subunitchromosome CDS861907 1887 + 0.643879
polI MCA2573 DNA polymerase Ichromosome CDS2754083 2721 - 0.659316
priA MCA2594 primosomal protein N`chromosome CDS2779193 2202 - 0.693006
recA MCA0387 recA proteinchromosome CDS391945 1044 + 0.641762
recB MCA0691 exodeoxyribonuclease V, beta subunitchromosome CDS723270 3603 + 0.67305
recC MCA0690 exodeoxyribonuclease V, gamma subunitchromosome CDS719857 3417 + 0.66813
recD MCA0692 exodeoxyribonuclease V, alpha subunitchromosome CDS726869 1812 + 0.689846
recF MCA3031 DNA replication and repair protein RecFchromosome CDS3217515 1080 - 0.633333
recG MCA2025 ATP-dependent DNA helicase RecGchromosome CDS2173712 2076 + 0.651734
recJ MCA0628 single-stranded-DNA-specific exonuclease RecJchromosome CDS664810 1800 + 0.678333
recN MCA1860 DNA repair protein RecNchromosome CDS1998017 1677 + 0.654144
recO MCA1461 DNA repair protein RecOchromosome CDS1552671 729 - 0.652949
recQ MCA1868 ATP-dependent DNA helicase RecQchromosome CDS2007600 2160 - 0.668056
recR MCA1326 recombination protein RecRchromosome CDS1414095 597 - 0.661642
rep MCA2140 ATP-dependent DNA helicase Repchromosome CDS2303018 2004 + 0.630738
rnhA MCA0719 RNase Hchromosome CDS759414 468 + 0.623932
rnhB MCA2443 ribonuclease HIIchromosome CDS2624340 582 - 0.654639
rnt MCA2077 ribonuclease Tchromosome CDS2236751 630 + 0.630159
ruvA MCA1222 Holliday junction DNA helicase RuvAchromosome CDS1287306 606 + 0.679868
ruvB MCA1223 Holliday junction DNA helicase RuvBchromosome CDS1287923 1038 + 0.67341
ruvC MCA1221 crossover junction endodeoxyribonuclease RuvCchromosome CDS1286812 498 + 0.65261
sbcB MCA2382 exodeoxyribonuclease Ichromosome CDS2562510 1437 - 0.636047
ssb MCA2690 single-strand binding proteinchromosome CDS2877665 519 - 0.631985
tag MCA0358 DNA-3-methyladenine glycosylase Ichromosome CDS359519 576 - 0.654514
topA MCA2839 DNA topoisomerase Ichromosome CDS3029974 2307 - 0.618119
ung MCA3092 uracil-DNA glycosylasechromosome CDS3278549 555 - 0.657658
uvrA MCA2694 excinuclease ABC, A subunitchromosome CDS2881050 2829 + 0.657123
uvrB MCA2201 excinuclease ABC, B subunitchromosome CDS2376669 1995 - 0.638596
uvrC MCA1681 excinuclease ABC, C subunitchromosome CDS1794329 1881 + 0.639022
uvrD MCA1037 DNA helicase IIchromosome CDS1088886 2181 - 0.654287
xerC MCA0861 integrase/recombinase XerCchromosome CDS908558 915 + 0.677596
xerD MCA0396 tyrosine recombinase XerDchromosome CDS399926 930 + 0.644086
xseA MCA1818 exodeoxyribonuclease VII, large subunitchromosome CDS1949431 1404 + 0.672365
xseB MCA0819 exodeoxyribonuclease VII, small subunitchromosome CDS861520 231 - 0.558442
xth-1 MCA0321 exodeoxyribonuclease IIIchromosome CDS316142 774 - 0.611111
xth-2 MCA3070 exodeoxyribonuclease IIIchromosome CDS3254189 771 + 0.644617