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# Phage Gifsy-1

>SC3139 putative cytoplasmic protein
MMTEFKRPQRDYPLSFKIAVVEQVEKGEMTYKQAQQRYGIQGRSTVLVWL
RKYGRLDWRPGLPDLVKRKLPVAQTTIPLTPEQRIRELEEQLELANQKAE
FFESVINVLKNDYGVSVVKKRPGKSSRKVRPPK
>SC2882 putative cytoplasmic protein
MMTEFKRPQRDYPLSFKIAVVEQVEKGEMTYKQAQQRYGIQGRSTVLVWL
RKYGRLDWRPGLPDLVKRKLPVAQTTIPLTPEQRIRELEEQLELANQKAE
FFESVINVLKNDYGVSVVKKRPGKSSRKVRPPK
>SC1895 putative cytoplasmic protein
MMTEFKRPQRDYPLSFKIAVVEQVEKGEMTYKQAQQRYGIQGRSTVLVWL
RKYGRLDWRPGLPDLVKRKLPVAQTTIPLTPEQRIRELEEQLELANQKAE
FFESVINVLKNDYGVSVVKKRPGKSSRKVRPPK
>SC3103 putative cytoplasmic protein
MMTEFKRPQRDYPLSFKIAVVEQVEKGEMTYKQAQQRYGIQGRSTVLVWL
RKYGRLDWRPGLPDLVKRKLPVAQTTIPLTPEQRIRELEEQLELANQKAE
FFESVINVLKNDYGVSVVKKRPGKSSRKVRPPK
>SC1383 putative cytoplasmic protein
MMTEFKRPQRDYPLSFKIAVVEQVEKGEMTYKQAQQRYGIQGRSTVLVWL
RKYGRLDWRPGLPDLVKRKLPVAQTTIPLTPEQRIRELEEQLELANQKAE
FFESVINVLKNDYGVSVVKKRPGKSSRKVRPPK
>SC3986 putative cytoplasmic protein
MMTEFKRPQRDYPLSFKIAVVEQVEKGEMTYKQAQQRYGIQGRSTVLVWL
RKYGRLDWRPGLPDLVKRKLPVAQTTIPLTPEQRIRELEEQLELANQKAE
FFESVINVLKNDYGVSVVKKRPGKSSRKVRPPK
>SC2689 large repetitive protein
MRLLAVVSKLTGVSTTVESSAVTLNAPSIVKLSVAREEISQLTRINQDLV
VRLHSGETITIKNFYVTNDLGASQLVLAENDGTLWWVENPQAGLHFEQIA
DINELLVTSGVSHEAGGAVWPWVLAGAVAAGGIAAIASSGGGDSHHHSDG
DNPPPDNTNPDGNPLITAIPAAVPPTAILQVAVIL
>SC3583 putative cytoplasmic protein
MMTEFKRPQRDYPLSFKIAVVEQVEKGEMTYKQAQQRYGIQGRSTVLVWL
RKYGRLDWRPGLPDLVKRKLPVAQTTIPLTPEQRIRELEEQLELANQKAE
FFESVINVLKNDYGVSVVKKRPGKSSRKVRPPK
>SC4352 hypothetical protein
MIKLPVIRSVDINNYQVYQNDTNSGISHIIHGGVHLIIGVNGLGKTTLLN
ALYRVLVGPKDVPKNDTALLGSAGHTLTGWRNSNYFRSRVKDGALNATIA
CKISFGDEYLEITRKLSNLEVISLKLNDVILPSSQDEYEKVVVDISGTAD
YVDFYSIVKYLIFFLEDRTELIWDERAQFEMLRILFYDAESSKAAVAHYD
RAQKADSKYRNIHASLKTIKDRIAEQSNQEVEGAKAQFLIEKAKLAALEE
KLASTLETQQQQINNIDEAKLARATISRELDELKYAVDYKQHLIYEHFLP
TQDSAIEYVLRNLSSGNGCLACGNKSASSEYFEEKFKVLHQCPICNSPLE
QQNVNTIDLDVLNKDLQVLYRKIEILEKSYASQDVLLEKFKNELYKTETL
LGETLIDLKSTQKQVRKIESDLPPDEFELQELRRIVAYREIELRQEDRIR
IDSHNEYVKILESNNSSLQDKMKLLEVKFSYYSKNLLAEKVFIKCEKQPR
KIGQGIPSIEFPSFKVLMTSGVFDREPSRRDDANSVSESQKEFIDLAFRL
SLIDIITNENNSPAMIVMETPEASLDSLFMHNAGRLFREFSYAQGQRNVF
IASTNLNKSEMIPTLLGSINSPKIFDKTDIDLILDRAGVEEDKVEVGVIP
PNQRANHIINLLELSAPNLSLKTHRDEYFDMYNKAVYPEGGKINE
>SC1005 ISSfl3 orfC,D
MEIDNNICENALRCVALGRRNYLFFGSDRSGEAAAIIYSLLGTCKLNDVE
SEAWLRDVLWKISDWSSNRVHELLPWNLETVK
>SC0937 putative cytoplasmic protein
MMTEFKRPQRDYPLSFKIAVVEQVEKGEMTYKQAQQRYGIQGRSTVLVWL
RKYGRLDWRPGLPDLVKRKLPVAQTTIPLTPEQRIRELEEQLELANQKAE
FFESVINVLKNDYGVSVVKKRPGKSSRKVRPPK
>SC2699 reverse transcriptase-like protein
MKSTKRTPSLQSPPKIYPLNQSPLFKLKNKRKLLEIIGLSKKQADKLMLD
SAYKEFVNDAGRTIQEPIAQLKAVHRKIGVLLSRIELPPYLHSGRKKHST
LTNVESHKLATELLKLDIHKFFPSTRAAKVYKAFVEKFEMSPDVAYIMTN
LSTFAGKVPTGSPISMAMAFWANKDMFDELSNLAASNSLVFTAYVDDVAF
SGSKIPKGFAAQAKKCIRSHGLTSKDKKERFYPSSEGKLLTGIVIQDGEL
KVRWAHNDSIGKEFATLAEAKDNATKIIHLEKLAGKLHAAGQVDFRQKDR
ARFFTQQLKATKKRSEQGT
>SC2004 hypothetical protein
MLVKLVRFAFYQHAEGTVMSLTDTKVKNARPAEKAVKLADGFGLYRFKIL
AVRLSL
>SC0291 putative integrase core domain
MLRMDKGPEFISLALAEWAKKHAVKLAFIQPGKPKKNVFIERFNRTYRTE
ILNSYLFRTLNEVREITDKGLSEYNCERPHESRNNMIPEEYRQ
>SC4375 putative cytoplasmic protein
MMTEFKRPQRDYPLSFKIAVVEQVEKGEMTYKQAQQRYGIQGRSTVLVWL
RKYGRLDWRPGLPDLVKRKLPVAQTTIPLTPEQRIRELEEQLELANQKAE
FFESVINVLKNDYGVSVVKKRPGKSSRKVRPPK
>SC1146 putative cytoplasmic protein
MMTEFKRPQRDYPLSFKIAVVEQVEKGEMTYKQAQQRYGIQGRSTVLVWL
RKYGRLDWRPGLPDLVKRKLPVAQTTIPLTPEQRIRELEEQLELANQKAE
FFESVINVLKNDYGVSVVKKRPGKSSRKVRPPK
>SC3730 putative cytoplasmic protein
MMTEFKRPQRDYPLSFKIAVVEQVEKGEMTYKQAQQRYGIQGRSTVLVWL
RKYGRLDWRPGLPDLVKRKLPVAQTTIPLTPEQRIRELEEQLELANQKAE
FFESVINVLKNDYGVSVVKKRPGKSSRKVRPPK
>SC0327 hypothetical protein
MSYIDKQALRISELEELNELLREKVKKLESDLWDKEQLRQVYSEKSLNLD
SKVRELEARNQKDFVWRGNEISRLNDEVDELKEKLEAANRRSAKLGRDCW
TYENTVKTLLERAESAESACTEAARILKSGERMALTRAVNILLSVGEDDW
STP
>SC2855 putative cytoplasmic protein
MMTEFKRPQRDYPLSFKIAVVEQVEKGEMTYKQAQQRYGIQGRSTVLVWL
RKYGRLDWRPGLPDLVKRKLPVAQTTIPLTPEQRIRELEEQLELANQKAE
FFESVINVLKNDYGVSVVKKRPGKSSRKVRPPK
>SC0902 probable integrase remnant
MHKYLSVVKKHRVPLSDAAVDLLKDLPRLKDNNHVFPAPRAETLSDMSLL
AVLKRMGYIDLTQHGFRSTFREWAGEATDYQREVIEHALAHQLADKAEAA
YQRGTLWPKRVALMDDWTGYSTANS
>SC2009 Hypothetical protein
MKDWAEVVNIRLHYLPPYSPNLNPIERMWKLMNEHARNNRYFSSTREFRD
AISVFFNQTLPDIADSLTSRIKDHFQVLTPAS
>SC3675 hypothetical protein
MSGKCYPEAFKIKVVKQVIERSHSVSSVATRLDITIHSLYAWIKPPHSRR
HHVDLNLTGHTGSSGWNRAVFMVIARSVSICWISGTMRCKQSLVVDATCG
DKGSGRIPKSTDAWRFILLRSEEANWRKITGVEPARDRWRPQLDLKSSRL
TGDDDLPRLDCYMEARAL
>SC1208 hypothetical protein
MLLQIINASSKPGDLVADFFMGSGSTVKAALLSGRRAISVELETERFSQT
VSEVEALAKR
>SC0033 putative cytoplasmic protein
MFANINVDCCKTPGCKNLGVLNSPDYVRQGKDVLCRECGFLFPVISAGAL
NLFRHTVNRGWKGLVKQCPACGSTSLKKYGFSTQGEHRMACSQCRKTFIV
PEKAKSDCRQDELATLIEEGTSLAGIRSQLKLDSTGLNRALFKLSRNANL
AERCQQFPAFDIALSTRAFRVNYNGGDSSLYVLVTAEEQSGRGVAISSNY
SAQPLDKAWQYQSYYEERLPPGTLAHMVQRKEAITARRETLFDIDYGPAS
LYKNDSGMIVKPVLPAYRHFELVRMLTDERSLNVQHYLDHECFILGGCMM
ANMPHVHQGRCHISFVKERGTTPLQKDIPPRLFLSGGIRNNVWRTFSTRD
YAMAVCNLTGNKKITQQRYATLQGATAFINYLYAHPFLAQLNRLSPANVT
ATLDYLKYEYNQSRKVG
>SC2404 putative cytoplasmic protein
MMTEFKRPQRDYPLSFKIAVVEQVEKGEMTYKQAQQRYGIQGRSTVLVWL
RKYGRLDWRPGLPDLVKRKLPVAQTTIPLTPEQRIRELEEQLELANQKAE
FFESVINVLKNDYGVSVVKKRPGKSSRKVRPPK
>SC2146 hypothetical protein
MHWRLDVAMNEDDCRIRRGNVKSFFEIIKSGEYEIWGCEIMRWIRINILK
CTLVFCLACGFSFAKTPCTNMSDKLSAAQRDSLQNNIKRQLKTERLNILE
FFKEQNSSIVYIETYGADEAFVFYSGDEFKDDFITIWSGAAEISEEKNIE
KWVKDHFPYIPDRLARCFAWYTIYRHD
>SC4196 TnpA, TnpA
MIRAAIKKRKVFPTDDSVRKVIYLAIKDASKKWSMPIQNWRLAMSRFIIE
FGDRLSNHL
>SC0584 TnpR, transposase of Tn10
MCELDILHDSLYQFCPELHLKRLNSLTLACHALLDCKTLTLTELGRNLPT
KARTKHNIKRIDRLLGNRHLHKERLAVYRWHASFICSGNTMPIVLVDWSD
IREQKRLMVLRASVALHGRSVTLYEKAFPLSEQCSKKAHDQFLADLASIL
PSNTTPLIVSDAGFKVPWYKSVEKLGWYWLSRVRGKVQYADLGAENWKPI
SNLHDMSSSHSKTLGYKRLTKSNPISCQILLYKSRSKGRKNQRSTRTHCH
HPSPKIYSASAKEPWVLATNLPVEIRTPKQLVNIYSKRMQIEETFRDLKS
PAYGLGLRHSRTSSSERFDIMLLIALMLQLTCWLAGVHAQKQGWDKHFQA
NTVRNRNVLSTVRLGMEVLRHSGYTITREDLLVAATLLAQNLFTHGYALG
KL
>SC4068 TnpR, transposase of Tn10
MCELDILHDSLYQFCPELHLKRLNSLTLACHALLDCKTLTLTELGRNLPT
KARTKHNIKRIDRLLGNRHLHKERLAVYRWHASFICSGNTMPIVLVDWSD
IREQKRLMVLRASVALHGRSVTLYEKAFPLSEQCSKKAHDQFLADLASIL
PSNTTPLIVSDAGFKVPWYKSVEKLGWYWLSRVRGKVQYADLGAENWKPI
SNLHDMSSSHSKTLGYKRLTKSNPISCQILLYKSRSKGRKNQRSTRTHCH
HPSPKIYSASAKEPWVLATNLPVEIRTPKQLVNIYSKRMQIEETFRDLKS
PAYGLGLRHSRTSSSERFDIMLLIALMLQLTCWLAGVHAQKQGWDKHFQA
NTVRNRNVLSTVRLGMEVLRHSGYTITREDLLVAATLLAQNLFTHGYALG
KL
>SC0853 TnpR, transposase of Tn10
MCELDILHDSLYQFCPELHLKRLNSLTLACHALLDCKTLTLTELGRNLPT
KARTKHNIKRIDRLLGNRHLHKERLAVYRWHASFICSGNTMPIVLVDWSD
IREQKRLMVLRASVALHGRSVTLYEKAFPLSEQCSKKAHDQFLADLASIL
PSNTTPLIVSDAGFKVPWYKSVEKLGWYWLSRVRGKVQYADLGAENWKPI
SNLHDMSSSHSKTLGYKRLTKSNPISCQILLYKSRSKGRKNQRSTRTHCH
HPSPKIYSASAKEPWVLATNLPVEIRTPKQLVNIYSKRMQIEETFRDLKS
PAYGLGLRHSRTSSSERFDIMLLIALMLQLTCWLAGVHAQKQGWDKHFQA
NTVRNRNVLSTVRLGMEVLRHSGYTITREDLLVAATLLAQNLFTHGYALG
KL
>SC3541 TnpR, transposase of Tn10
MCELDILHDSLYQFCPELHLKRLNSLTLACHALLDCKTLTLTELGRNLPT
KARTKHNIKRIDRLLGNRHLHKERLAVYRWHASFICSGNTMPIVLVDWSD
IREQKRLMVLRASVALHGRSVTLYEKAFPLSEQCSKKAHDQFLADLASIL
PSNTTPLIVSDAGFKVPWYKSVEKLGWYWLSRVRGKVQYADLGAENWKPI
SNLHDMSSSHSKTLGYKRLTKSNPISCQILLYKSRSKGRKNQRSTRTHCH
HPSPKIYSASAKEPWVLATNLPVEIRTPKQLVNIYSKRMQIEETFRDLKS
PAYGLGLRHSRTSSSERFDIMLLIALMLQLTCWLAGVHAQKQGWDKHFQA
NTVRNRNVLSTVRLGMEVLRHSGYTITREDLLVAATLLAQNLFTHGYALG
KL
>SC2269 ada, O6-methylguanine-DNA methyltransferase; transcription activator/repressor (AraC/Xyl family)
MMKKALLTDDECWLRVQARDASADGRFVFAVRTTGVFCRPSCHSKRALRK
NVRFFANAQQALDAGFRPCKRCQPDNARAQQRRLDKIACACRLLEQETPV
TLASLAQAVAMSPFHLHRLFKASTGMTPKGWQQAWRARRLREALAKGEQI
TAAIYRAGFPDSSSYYRHADQTLGMTAKQFRKGGDNVSVRYALTDWVYGR
CLVAESERGICAILPGDSDEALLAELHTLFPAARHAPADAPFQQRVRQVV
AAINTRDVLLSLPLDIQGTAFQQQVWQALCAIPCGETVSYQQLAATIGKP
TAVRAVASACGANKLAMVIPCHRVVRRDGALSGYRWGVRRKAQLLKREAQ
KEE
>SC2127 alkA, 3-methyl-adenine DNA glycosylase II, inducible
MFTLSWQPPYDWSWMLGFLAARAVDGVETVGEGFYARSLVVGEHRGLVSV
RPHLPTHTVQVSVSAGLLPVAPACLAKVSRLFDLDCQPAQVAAVLGPLGE
DRPGLRLPGSVDTFEQGVRAILGQLVSVAMAARLTAKVARRYGEALPDAP
DYVCFPGPETLALADPLALKALGMPLRRAEALIHLAQATLAGKLALAAPS
DIEQSVKNLQTFPGIGRWTANYFALRGWQAKDIFLPDDYLIKQRFAGMTA
AQIRRYAERWKPWRSYALLHIWYTHGWQPSMDSEIAGIQ
>SC2268 alkB, DNA repair system specific for alkylated DNA
MLDLFADEAPWQEPLAPGAVVLRRFAFRAAQSLLDDIGFVASQSPFRQMV
TPGGYTMSVAMTNCGALGWTTDRHGYCYAVRDPLTDKPWPALPLSFASVC
RQAAIAAGYASFQPDACLINRYAPGAKLSLHQDKDEPDLRAPIVSVSLGV
PAVFQFGGLRRSDPIQRILLEHGDIVVWGGESRLFYHGIQPLKAGFHPMT
GEFRYNLTFRQAAEKE
>SC1330 cho, putative nuclease subunit of the excinuclease complex
MNNQLTEITVVRRQSAPRLEFEAAAIYEYPEHLRPFLSEAPALPGVYIFH
SESDTLPLYIGKSVNIRSRVLSHLRTPDEATMLRQARRISWICTAGEMGA
LLLEARLIKEQQPLFNKRLRRNRQLCSLQLSEQKIEVVSARSVDFSHEPN
LFGLFANRRAALQSLQNLADEQKLCYGLLGLEPVSRGRACFRFALKRCAG
ACCGQETPQAHFLRLQASLERLRVVCWPWKGAIALKESRPQMTQFHIINN
WLWLGAVPSLDEAATLVRTPAGFDQDGYKILCKPLMSGQYEIIELHTDCR
QS
>SC3416 dam, DNA adenine methylase
MKKNRAFLKWAGGKYPLLDDIKRHLPKGECLVEPFVGAGSVFLNTDFSRY
ILADINSDLISLYNIVKLRTDEYVQASRELFMPETNQAEVYYQLREEFNT
CQDPFRRAVLFLYLNRYGYNGLCRYNLRGEFNVPFGRYKRPYFPEAELYH
FAEKAQNAFFYCESYADSMARADKSSVVYCDPPYAPLSATANFTAYHTNS
FSLTQQAHLAEIAENLVSNRIPVLISNHDTALTREWYQLAKLHVVKVRRS
ISSNGGTRKKVDELLALYQPGVATPARK
>SC1650 dbpA, ATP-dependent RNA helicase, stimulated by 23S rRNA
MTAFSTLNVLPAAQLNNLTELGYLEMTPVQAAALPVILAGNDVRVQARTG
SGKTAAFGLGLLHRIDVTLFQTQALVLCPTRELADQVAGELRRLARFLPN
TKILTLCGGQPFGAQRDSLQHAPHIIVATPGRLLDHLQKETVSLDALHIL
VMDEADRMLDMGFSDAIDEVIRFAPATRQTLLFSATWPEAIAAISGRVQQ
QPIRIEIDTVDALPAIEQQFFETSAHEKISLLQTLLSQHQPASCVVFCNT
KKDCQAVCDALNAVGQSALALHGDLEQRDRDQTLVRFANGSARILVATDV
AARGLDIKSLELVVNYELAWDPEVHVHRIGRTARAGSSGLAISFCAPEEA
QRANILSEMLQLKLNWLNAPARQSLLPLAAEMATLCIDGGKKAKMRPGDI
LGALTGDIGLDGADIGKINVHPMHVYVAVRQAVAQKAWKQLQNGKIKGKS
CRVRLLK
>SC1995 dcm, DNA cytosine methylase
MQENISVTHARNLIADDAGSEIQAMLSQLLEIYDVKTLVAHLNGLGEQHW
SPAIFKRVMMNAAWHRLSDNELTCLKTGLPTPPAHHPHYAFRFIDLFAGI
GGIRRGFEAIGGQCVFTSEWNKHAVRTYKANYFCDPLQHRFNEDIRDITL
SHREGVSDDEAAEHIRQHIPQHDVLLAGFPCQPFSLAGVSKKNALGRAHG
FACETQGTLFFDVVRIIDARRPALFVLENVKNLKSHDQGNTFRIIMQTLD
ELGYDVADAADNGPDDPKIIDGQHFLPQHRERIVLVGFRRDLNLKTDFTL
RNIARCYPPRRPTLAELLEPVVEAKYILTPVLWKYLYRYAKKHQARGNGF
GYGMVYPDNPESVARTLSARYYKDGAEILIDRGWDMAKGEVNFDDAGNQQ
HRPRRLTPRECARLMGFEAPQTYQFRIPVSDTQAYRQFGNSVVVPVFAAV
AKLLEPKIHQAVTLCQKETVDGGRSR
>SC3221 deaD, cysteine sulfinate desulfinase
MQINFMMSYVDWPPLILRHTYYMAEFETTFADLGLKAPILEALTDLGYEK
PSPIQAECIPHLLGGRDVLGMAQTGSGKTAAFSLPLLNNLDPELKAPQIL
VLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQI
VVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIP
EGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVW
GMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGD
MNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSES
YVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPEVELPNAEL
LGKRRLEKFAAKVQQQLESSDLDQYRALLAKIQPSAEGEELDLETLAAAL
LKMAQGERPLILPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREERPRR
ERRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASH
STIELPKGMPGEVLQHFTRTRILNKPMNMQLLGDAVPHAGGERRGGGRSF
SGERREGGRNFSGERREGGRGDGRRFSGERRESRGPRRDDSTGRRRFGGD
A
>SC0818 dinG, LexA regulated (SOS) repair enzyme
MALTAALKAQIAAWYKALQDQIPDFIPRAPQRQMIADVARTLAGEEGRHL
AIEAPTGVGKTLSYLIPGIAIAREEQKTLVVSTANVALQDQIFSKDLPLL
RKIIPDLRFTAAFGRGRYVCPRNLAALASSEPTQQDLLAFLDDELTPNNQ
EEQKRCARLKGDLDGYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNCH
YYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPEPKHLLLVLDEG
HHLPDVARDALEMSAEITASWYRLQLDLFSKLVATSMEQFRPKTTPPLAN
PERLNAHCEEVYELIASLNAILNLYMPAAQEAEHRFAMGELPDEVMEICQ
RLAKLTETLRGLAESFLNDLSEKTGSHDIVRLHRVILQMNWALGMFEAQS
KLWRLASMAQSSGAPVSKWATREIREGQLHVWFHCVGIRVSDQLERLLWR
SVPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHVEQGKL
VIPQMRYEPTIDNEEQHIAEMAAYFREQLESKKHHGMLVLFASGRAMQRF
LEHVADVRLLLLVQGDQPRYRLVELHRKRVESGERSVLVGLQSFAEGLDL
KGELLTQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNL
IQQVGRLIRSHACRGEVVIYDKRLLTKNYGQRLLNALPVFPIEQPAVPDV
IVKPKAKPARRRRR
>SC0314 dinP, DNA polymerase IV, devoid of proofreading, damage-inducible protein P
MRKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARQ
FGVRSAMPTAMALKLCPHLTLLPGRFVAYKEASRHVRDIFSRYTSLIEPL
SLDEAWLDVTDSPHCYGSATLIAREIRQTIFNELQLTASAGVAPVKFLAK
IASDLNKPNGQYVITPADVPGFLKTLPLAKIPGVGKVSAAKLENMGLRTC
GDIQQCDLAMLLKRFGKFGRVLWERSQGIDERDVNSERLRKSVGVERTLA
EDIHEWSDCEAIIEHLYPELERRLAIVKPDLLIARQGVKLKFNDFQQTTQ
EHVWPQLNKEDLIITARKTWNERRGERGVRLVGLHVTLLDPQLERQLVLG
L
>SC3756 dnaA, DNA replication initiator protein
MSLSLWQQCLARLQDELPATEFSMWIRPLQAELSDNTLALYAPNRFVLDW
VRDKYLNNINGLLNTFCGADAPQLRFEVGTKPVTQTLKTPVHNVVAPTQT
TTAQPQRVAPAARSGWDNVPAPAEPTYRSNVNVKHTFDNFVEGKSNQLAR
AAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIMARKPNAKVVYM
HSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF
HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELET
RVAILMKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTG
RAITIDFVREALRDLLALQEKLVTIDNIQKTVAEYYKIKIADLLSKRRSR
SVARPRQMAMALAKELTNYSLPEIGDAFGGRDHTTVLHACRKIEQLREES
HDIKEDFSNLIRTLSS
>SC4125 dnaB, putative replicative DNA helicase;chromosome replication; chain elongation
MAGNKPFNKPQTDARDRDPQVAGIKVPPHSIEAEQSVLGGLMLDNERWDD
VAERVVAEDFYTRPHRHIFTEMGRLQESGSPIDLITLAESLERQGQLDSV
GGFAYLAELSKNTPSAANISAYADIVRERAVVRDMIAVAHEIADAGYDPQ
GRNSDELLDLAESRVFQIAENRANKDEGPKSIDQILDATVARIEQLLQQP
HDGVTGVDTGYQDLNKKTAGLQRSDLIIVAARPSMGKTTFAMNLCENAAM
LQDKPVLIFSLEMPGEQIMMRMLASLSRVDQTRIRTGQLDDEDWARISGT
MGILLEKRNMYIDDSSGLTPTEVRSRARRIFREHGGLSLIMIDYLQLMRV
PSLSDNRTLEIAEISRSLKALAKELQVPVVALSQLNRSLEQRADKRPVNS
DLRESGSIEQDADLIMFIYRDEVYHENSDLKGIAEIIIGKQRNGPIGTVR
LTFNGQWSRFDNYAGPQYDDE
>SC4395 dnaC, chromosome replication; initiation and chain elongation
MKNVGDLMQRLQKMMPAHITPAFKTGEELLAWQKEQGELRAAALARENRA
MKMQRTFNRSGIRPLHQNCSFDNYRVECDGQMNALSKARQYVDEFDGNIA
SFVFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFSNRE
TSEEQLLNDLSNVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGM
LTNSNMEEMTKMLGERVMDRMRLGNSLWVNFTWDSYRSRVTGKEY
>SC2631 dnaC, Gifsy-1 prophage DnaC
MKNVIGTGSALDRLKRIIPASVQPKFSTADEWRAWQEAEGRKRSEELDRM
NQKSRTEKIFGRSGIQDLHRSCTFANYEVSGEGQRKAYTMAKSYAQNFGS
GFASFVFSGGLGTGKNHLAAAIGNHLLAGGHSVLVVTIPDLMLRVRECYD
GGQSEASLLDDLCKVDLLVLDEVGIQRGSSGEKVILNQVIDRRLSSMRPV
GVLTNLNHEGLLDSLGARVIDRLQMDGGMWVNFDWGSYRKNVSHLRIVK
>SC0231 dnaE, DNA polymerase III, alpha subunit
MSEPRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGL
VKFYGAGHGAGIKPIVGADFNVHNELLGDELTHLTVLAANNTGYQNLTLL
ISKAYQRGYGAAGPIIERDWLVELKEGLILLSGGRMGDVGRCLLRGNQAL
VEECVAFYETHFPDRYFLELIRTGRQDEETYLHAAVELAEARGLPVVATN
DVRFLESDDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEEMCELF
SDIPEALENTVEIAKRCNVTVRLGEYFLPQFPTGDMTTEDYLVKKSKEGL
EERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLIVMEFIQW
SKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMP
DFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLG
HPYGFVDRISKLVPPDPGMTLAKAFEAEPQLPEIYEADEEVRALIDMARK
LEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAG
LVKFDFLGLRTLTIINWALEMINKRREKNGEPPLDIAAIPLDDKKSFDML
QRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDN
FIDRKHGREELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGY
TLGGADMLRRAMGKKKPEEMAKQRSVFEEGAKKNGIDGELAMKIFDLVEK
FAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGL
VDECWRMGLKILPPDINSGLYHFHVNDEGEIVYGIGAIKGVGEGPIEAII
DARNQGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMN
SLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVL
DGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLV
IAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIV
SGQVSFDDFSGGLKMTAREVMDIDEAREKYARGLAISLTDRQIDDQLLNR
LRQSLEPHRSGTIPVHLYYQRADARARLRFGATWRVSPSDRLLNDLRGLI
GSEQVELEFD
>SC3157 dnaG, DNA biosynthesis; DNA primase
MAGRIPRVFINDLLARTDIVDLIDVRVKLKKQGKNYHACCPFHNEKTPSF
TVNGEKQFYHCFGCGAHGNAIDFLMNYDKLEFVETVEELAAMHNLEIPYE
AGTGLSQIERHQRQNLYQLMNGLNDFYQQSLTHPAAKPARDYLQKRGLSA
EIIQRFAIGFAPPGWDNALKRFGNNSDNKALLLDAGMLVNNEQGSTYDRF
RNRVMFPIRDKRGRVIGFGGRVLGNDTPKYLNSPETDIFHKGRQLYGLYE
AQQYSAEPQRLLVVEGYMDVVALAQYDINYAVASLGTSTTADHMHMLFRA
TNNVICCYDGDRAGRDAAWRALETAMPYMTDGRQVRFMFLPDGEDPDTLV
RKEGKAAFEARMEQAQPLSTFLFNSLLPQVDLSSPDGSTQLAALALPLIN
QVPGDAHRIQLRQTLGLKLGIFDDSQLDRLVPKQAESGVSLPAPQLKRTT
MRILIGLLVQNPDLAPLVPPLDALDQNKLPGLGLFKELVKTCLAQPGLTT
GQLLELYRGTNDAATLEKLSMWDDIADKAIAEKTFTDSLNHMFDSLLQLR
QEELIARDRTHGLSSEERRELWTLNQELARK
>SC3755 dnaN, DNA polymerase III, beta-subunit
MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLE
MEMVARVTLSQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGDRMLVR
SGRSRFSLSTLPAADFPNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQD
VRYYLNGMLFETEGSELRTVATDGHRLAVCSMPLEASLPSHSVIVPRKGV
IELMRMLDGGENPLRVQIGSNNIRAHVGDFIFTSKLVDGRFPDYRRVLPK
NPDKHLEAGCDILKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQE
EAEEILDVSYGGTEMEIGFNVSYVLDVLNALKCETVRIMLTDSVSSVQIE
DAASQSAAYVVMPMRL
>SC0260 dnaQ, DNA polymerase III, epsilon subunit, 3-5 exonucleolytic proofreading function
MTDMSTAITRQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNN
FHVYLKPDRLVDPEAFGVHGIADEFLLDKPVFADVVDEFLDYIRGAELVI
HNASFDIGFMDYEFGLLKRDIPKTNTFCKVTDSLALARKMFPGKRNSLDA
LCSRYEIDNSKRTLHGALLDAQILAEVYLAMTGGQTSMTFAMEGETQRQQ
GEATIQRIVRQASRLRVVFATEEELAAHESRLDLVQKKGGSCLWRA
>SC0525 dnaX, DNA polymerase III, tau and gamma subunits; DNA elongation factor III
MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVG
KTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTK
VEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPAHV
KFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEP
RALQLLSRAADGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQAL
SLVEAVVDANGERVMSLINEAAARGIEWEALLVEMLSLLHRIAMVQLSPA
ALGSDMAAIEQRMRELARTVPPGDLQLYYQTLLIGRKELPWAPDRRMGVE
MTLLRALAFHPRMPLPEPETPRQSFAPVAPTAVMTPPQVQQPSAPAPQTS
PAPLPASTSQVLAARNQLQRAQGVTKTKKSEPAAASRARPVNHSALERLA
SVSERVQARPAPSALETAPVKKEAYRWKATTPVVQTKEVVATPKALKKAL
EHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVALNAWKEQNGNA
VCLHLRSTQRHLNSSGAQQKLAQALSDLTGTTVELTIVEDDNPAVRTPLE
WRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRPI
>SC3033 endA, DNA-specific endonuclease I
MYRNFSFAAVLLAAAFSGQALADGINNFSQAKAASVKVNADAPGSFYCGC
QIRWQGKKGVVDLESCGYKVRKNENRARRIEWEHVVPAWQFGHQRQCWQD
GGRKNCAKDPVYRKMESDMHNLQPAIGEVNGDRGNFMYSQWNGGEGQYGQ
CAMKVDFKAKLAEPPARARGAIARTYFYMRDQYQLKLSRQQTQLFNVWDK
QYPVTAWECERDARIAKVQGNHNPYVQRACQARKS
>SC2911 exo, exonuclease IX, 5'-3' exonuclease
MLASPRRECYPTRRFVRENTVAAHLLIVDALNLIRRIHAVQGSPCVETCQ
HALDQLIIHSQPTHAVAVFDDDARSSGWRHQRLPDYKAGRPPMPDDLHNE
MPALRAAFEQRGVRCWASDGNEADDLAATLALKVTEAGHQATIVSTDKGY
CQLLSPGLRIRDYFQKRWLDAPFIEKEFGVLPRQLPDYWGLAGISSSKVP
GVAGIGPKSATQLLIQFQNLEGIYAHLDKVPEKWRKKLETHKEMAFLCRD
IARLQTDLHIDGNLQQLRLAR
>SC1883 exoX, DNA exonuclease X, degrades ss and ds DNA with 3'-5' polarity
MLRIIDTETCGLQGGIVEIASVDVIDGNIVNPMSHLIRPDRPITPQAMAI
HRITEAMVADKPWIEDVIPLYYGSEWYVAHNASFDRRVLPELPGEWICTM
KLSRRLWPGIKYSNMALYKSRKLSVQTPPGLHHHRALYDCYITAALLIDI
MRTTGWTAEEMVNITGRPALLTTFPFGKYRGKAVSEVAKRDPGYLRWLFN
NLDNMSPELRLTLKHYLEDVQAGEQRSNGTPQ
>SC3323 fis, DNA-binding protein fis
MFEQRVNSDVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDL
YELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN
>SC1223 gipA, Gifsy-1 prophage GlpA
MKRAYKYRFYPTTEQAELLAQTFGCVRFVYNSILRWRTDAYYERKEKIGY
LQANARLTALKKEPEFAWLNDVSCVPLQQSLRHQQTAFANFFAGRAAYPA
FKSKRHKQAAEFTASAFKYRDGKLYMAKNKIPLDVRWSRPLPSVPSTVTI
SKDAAGRYFVSCLCEFESASLPITSSMVGIDVGLKDLFVTDTGFRSGNPR
HTAKYAARLALLQRRLSKKAKGSKNRAKARLKVAQLHAKIADCRLDALHK
ASRKLINDNQVVCVESLKVKNMLRNPSLSKAIADASWGELVRQLQYKGEW
AGRSVVAIDQFFPSSKRCSCCGFTMKKMPLDVRKWQCPECGTDHDRDVNA
ARNIKAAGLAVLAHGEPVNPESLKAA
>SC2275 gyrA, DNA gyrase, subunit A, type II topoisomerase
MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLY
AMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYNTIVRMAQPFSLRY
MLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYD
GTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDN
EDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVEA
DAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDG
MRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDI
ISAFVRHRREVVTRRTIFELRKARDRAHILEALAIALANIDPIIELIRRA
PTPAEAKAALISRPWDLGNVAAMLERAGDDAARPEWLEPEFGVRDGQYYL
TEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIAELLHILGSADRLME
VIREEMELIRDQFGDERRTEITANSADINIEDLISQEDVVVTLSHQGYVK
YQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLY
WMKVYQLPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVNVFMAT
ASGTVKKTALTEFSRPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAA
GKVVRFKEDAVRAMGRTATGVRGIKLAGDDKVVSLIIPRGEGAILTVTQN
GYGKRTAADEYPTKSRATQGVISIKVTERNGSVVGAVQVDDCDQIMMITD
AGTLVRTRVSEISVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEELDA
IDGSVAEGDEDIAPEAESDDDVADDADE
>SC3753 gyrB, DNA gyrase, subunit B (type II topoisomerase)
MSNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDE
ALAGHCKDIVVTIHADNSVSVMDDGRGIPTGIHPEEGVSAAEVIMTVLHA
GGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQRDGKIHRQIYEHGVP
QAPLAVTGDTDKTGTMVRFWPSHETFTNVTEFEYEILAKRLRELSFLNSG
VSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGI
GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKE
GYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVE
QQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDL
AGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKI
LNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDAD
VDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKKGKQEQYIKDDE
AMDQYQISIALDGATLHANAHAPALSGEALEKLVSEYNATQKMIGRMERR
FPKALLKELVYQPTLTEADLSDEQTVTRWVNALITELNEKEQHGSQWKFD
VHTNTEQNLFEPIVRVRTHGVDTDYPLDHEFVTGAEYRRICTLGEKLRGL
IEEDAFIERGERRQPVTSFEQALEWLVKESRRGLAIQRYKGLGEMNPDQL
WETTMDPESRRMLRVTVKDAIAADQLFTTLMGDAVEPRRAFIEENALKAA
NIDI
>SC1027 helD, DNA helicase IV
MELKATSLGKRLAQHPYDRAVILNAGVKVSGDRHEYLIPFNQLLAIHCKR
GLVWGELEFVLPEDKVVRLHGTEWSETQQFHRYLDAHWRRWSQEMSDVAA
QALREQWARISERTGENQWLTRERVRGLEHEIRQTFAALPLPVSRLEEFA
HCREIWRKCLAWLQDSEGSRQQHNQAYADAMLEAHADFFTQIESSPLNPS
QARAVVNGESSLLVLAGAGSGKTSVLVARTGWLLARGQADAGQILLLAFG
RKAAEEMDERIRERLHTEEITARTFHSLALYIIQQGSKKAPVVSKLESDA
TARHQLFLHTWRQQCSEKKAQAKGWRQWLEEEMQWVVPEGNFWDDETLQR
RLAPRLDRWVSLMRMHGGAQSEMIAGAPEECRELFGKRIKLMAPLLKAWK
SALKAENAVDFSGLIHQAMVILEKGRFISPWKHILVDEFQDISPQRAALL
EALRKQNSQTMLFAVGDDWQAIYRFSGAQLSLTTAFHQTFGEGEHCHLDT
TYRFNSRIGDIANRFVQQNPHQLKKPLNSLTPGDKKAVTLLDESQLDALL
DKLSGYAKEDERILVLARYHHLKPASLQKAATRWPKLQIDFMTIHASKGQ
QADYVILVGLQEGNDGFPAPARESIMESALLPQVEDFPDAEERRLLYVAL
TRARARVWLLFNKDNPSRFVEALKQLDVPVARKP
>SC0091 hepA, RNA polymerase associated protein, putative SNF2 family RNA helicase
MPFTLGQRWISDTESELGLGTIVAMDARTVTLLFPSTGENRLYARSDSPV
TRVMFNPGDTITSHEGWQLHIDEVKEENGLLVYVGTRLDTEETNVTLREV
LLDSKLVFSKPQDRLFAGQIDRMDRFALRYRARKFQSEQYRMPYSGLRGQ
RTNLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAA
ERVLIIVPETLQHQWLVEMLRRFNLRFALFDDERYTEAQHDAYNPFETEQ
LVICSLDFARRNKQRLEHLCDAEWDLLVVDEAHHLVWSTDAPSREYMAIE
QLAERVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFEQFVEEQKNYR
PVADAVAMLLAGNKLSNDELNRLGDLIGEQDIEPLLQAANSDRDDAQAAR
DELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTVKLPLPTQYQTAIKV
SGIMGARKSAEDRARDMLYPEQIYQEFEGDTGTWWNFDPRVEWLMGYLTS
HRSQKVLVICAKATTALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWF
AEEDTGAQVLLCSEIGSEGRNFQFASNLVMFDLPFNPDLLEQRIGRLDRI
GQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEHTCPTGRAIYDSAYASL
INYLAAPEETDGFDDLIKSCREQHEALKAQLEQGRDRLLEIHSNGGEKAQ
QLAQSIEEQDDDTNLIAFAMNLFDIVGINQDDRGDNLIVLTPSDHMLVPD
FPGLPEDGCTITFERDVALSREDAQFITWEHPLIRNGLDLILSGDTGSST
ISLLKNKALPVGTLLVELVYVVEAQAPKQLQLNRFLPPTPVRMLLDKNGN
NLAAQVEFETFNRQLSAVNRHTGSKLVNAVQQDVHAILQLGETQIEKSAR
ALIDNARREADEKLSGELSRLEALRAVNPNIRDDELAAIDSNRQQVLESL
NQAGWRLDALRLIVVTHQ
>SC1358 himA, integration host factor (IHF), alpha subunit
MALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFG
NFDLRDKNQRPGRNPKTGEDIPITARRVVTFRPGQKLKSRVENASPKEE
>SC0936 himD, integration host factor (IHF), beta subunit; site-specific recombination
MTKSELIERLATQQSHIPAKAVEDAVKEMLEHMASTLAQGERIEIRGFGS
FSLHYRAPRTGRNPKTGDKVELEGKYVPHFKPGKELRDRANIYG
>SC2702 hin, H inversion: regulation of flagellar gene expression by site-specific inversion of DNA
MATIGHIRVSTIDQNIDLQRNALTCANCDRIFEDRISGKIANRPGLKRAL
KYVNKGDTLVVWKLDRLGSSVKNLVALISELHERGAHFHSLTDSIDTSSA
MGRFFFHVMSALAEMERELIVERTLAGLAAARAQGRLGGRPRAINKHEQE
QISRLLEKGHPRQQLAIIFGIGVSTLYRYFPASRIKKRMN
>SC0676 holA, DNA polymerase III, delta subunit
MIRLYPEQLRAQLNEGLRAAYLLLGNDPLLLQESQDAIRLAAASQGFEEH
HAFTLDPSTDWGSLFSLCQAMSLFASRQTLVLQLPENGPNAAMNEQLATL
SELLHDDLLLIVRGNKLTKAQENAAWYTALADRSVQVSCQTPEQAQLPRW
VAARAKAQNLQLDDAANQLLCYCYEGNLLALAQSLERLSLLWPDGKLTLP
RVEQAVNDAAHFTPFHWVDALLMGKSKRALHILQQLRLEGSEPVILLRTL
QRELLLLVNLKRQSAHTPLRALFDKHRVWQNRRPMIGDALQRLHPAQLRQ
AVQLLTRTEITLKQDYGQSVWADLEGLSLLLCHKALADVFIDG
>SC1151 holB, DNA polymerase III, delta prime subunit
MKWYPWLRPAYEKLVESYQAGRGHHALLIQALPGMGDEALCYALSRYLLC
QQPEGHKSCGHCRGCQLMQAGTHPDYYTLTPDKGKSSLGVDAVREVSEKL
YEHSRLGGAKVVWIADAALLTDAAANALLKTLEEPPEQTWFFLASPEPAR
LLATLRSRCRLHHLAPPSESYAMSWLSREVTASQEALLTALRLNAGSPGA
ALALLQSERWAQREALCQALMDSLHTGDWYALLTALNHEQAPARLHWLAT
LLVDALKRQHGASYLTNVDADAVVAALAGPLSPVRIQAILNDVCHCRDQL
LHVTGLNRELVLTDLILRIEHYLQPGTLLPVPHL
>SC4332 holC, DNA polymerase III, chi subunit
MKNATFYLLDNDTTVNGLSAVEQLVCEIAAERWRAGKRVLIACEDEKQAI
RLDEALWARPAESFVPHNLAGEGPRGGAPVEIAWPQKRNSSPRDILISLR
TSFADFATAFTEVVDFVPYEETLKQLARERYKAYRVAGFNLNTATWK
>SC1636 hrpA, helicase, ATP-dependent
MTEQSTLTLQVLQQRLDALMLRDKQRFARRLHGVKKVKNPDAQQAIFQTM
AKEIEQAAAQVALREAARPSITYPQNLPVSQKKQDILEAIRDHQVVIVAG
ETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLAARTVANRIAEELQTEP
GGCIGYKVRFSDHVSSNTMVKLMTDGILLAEIQQDRLLMQYDTIIIDEAH
ERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSRHFDNAPIIEVS
GRTYPVEVRYRPIVEEADDTERDQLQAIFDAVDELGRESPGDILIFMSGE
REIRDTADALNKLNLRHTEVLPLYARLSNSEQNRVFQSHSERRIVLATNV
AETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRC
GRVSEGICIRLYSEYDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAA
FPFVEAPDKRNIQDGVRLLEELGAITADEQQTAYKLTPLGRQLSQLPVDP
RLARMVLEAQKHGCVREAMIITSALSIQDPRERPVDKQQASDEKHRRFHD
KESDFLAFVNLWNYLGEQQKALSSNQFRRLCRTDYLNYLRVREWQDIYTQ
LRQVVKELGIPVNSEPAEYREIHVALLTGLLSHIGMKDADKQEYTGARNA
RFSIFPGSGLFKKPPKWTMVAELVETSRLWGRIAARIEPEWVEPVAQHLI
KRSYSEPHWERAQGAVMATEKVTVYGLPIVAARKVNYSQIDPALCRELFI
RHALVEGDWQTRHAFFRENLKLRAEVEELEHKSRRRDILVDDDTLFEFYD
QRISHDVISARHFDSWWKKISRETPDLLNFEKSMLIKEGAEKISKLDYPN
FWHQGNLKLRLSYQFEPGADADGVTVHIPLPLLNQVDESGFEWQIPGLRR
ELVIALIKSLPKPVRRNFVPAPNYAEAFLGRVTPLELPLLDALERELRRM
TGVTVDREDWHWDQVPEHLKITFRVVNDKNKKLQEGRSLAELKNALKGKV
QETLSAVADDGIEQSGLHIWSFGELPESYEQKRGNYKVKAWPALVDERDS
VAIKLFDNPLEQQQAMWCGLRRLLLLNIPSPIKYLHEKLPNKAKLGLYFN
PYGKVLELIDDCIACGVDKLIDANGGPVWSEAGFTTLHEKVRAELNDTVV
DIAKQVERILTTVFNINKRLKRRVDMSMALGLSDIKAQMSGLVYRGFVTG
NGFKRLGDTLRYLQAIEKRLEKLAVDPHRDRAQMLKVESVQQAWQQWINK
LPPARREDDDVKEIRWMIEELRVSYFAQQLGTPYPISDKRILQAMDQITA
>SC0189 hrpB, helicase, ATP-dependent
MLQCGAKKVNPVEPFVTSLPVAAVLPELLTALKTAPQVLLSAPTGAGKST
WLPLQLLQQGPVAGKILLLEPRRLAARNVAQRLAEALNEKPGETVGYRMR
AQSCVGPRTRLEVVTEGVLTRMIQRDPELRGVGLVILDEFHERSLQADLA
LALLLDIQQGLRDDLRLLIMSATLDNDRLCQRLPDAPTLVSEGRAFPVER
RYQPLAAHLRFDEAVAMATAELLRNENGSLLLFLPGVGEIQRVHEHLASR
VGSDVLLCPLYGALSLEAQRKAIVPAPAGMRKVVLATNIAETSLTIEGIR
LVVDSAQERVARFDARTGLTRLVTQRISQASMTQRAGRAGRLAPGICLHL
LAKEQAERAGAQSDPEILHSDLSGLLMEVLQWGCHDPASLFWLDRPPEVN
LQAARRLLLMLGALEGERLSARGRKMAATGNDPRLAAMLVNAGEGDSAAT
AAMLAAILEDPPRGGGTDLSVVFSRRQPGWQQRSQQLLKRLQVRNGEPDS
ALIMPLLARAFSDRIARRRGQEGRYQLANGMGAMLDADDALGRHEWLIAP
LLLQGSSSPDARILLAQPLDIASLIQACPDLLRQSDTVEWDEAQGTLKAW
RRMRIGQLTVSVQPLAKPSEEELHQAMLNGIRDKGLSVLNWTPEAEQFRL
RLHCAAKWLPEYDWPAVDEASLLATLENWLLPHMTGVQSLRSLKSLNVTQ
ALRGLLDYAMLQRLDSELPGHYTVPTGSRITIRYHEDNPPALAVRMQEMF
GEAKTPTIAQGRVPLVLELLSPAQRPLQITRDLSAFWQGAYREVQKEMKG
RYPKHVWPDDPVNTAPTRRTKKYS
>SC4051 hupA, DNA-binding protein HU-alpha (HU-2)
MNKTQLIDVIADKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTF
KVNHRAERTGRNPQTGKEIKIAAANVPAFVSGKALKDAVK
>SC0493 hupB, DNA-binding protein HU-beta, NS1 (HU-1)
MNKSQLIEKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTF
AVKERAARTGRNPQTGKEITIAAAKVPSFRAGKALKDAVN
>SC1833 insA, Insertion element IS1 1/2/3/5/6 protein insA
MASVSISCPSCSATDGVVRNGKSTAGHQRYLCSHCRKTWQLQFTYTASQP
GTHQKIIDMAMNGVGCRATARIMGVGLNTIFRHLKNSGRSR
>SC1834 insB, IS1 transposase
MPGNRPHYGRWPQHDFPPFKKLRPQSVTSRIQPGSDVIVCAEMDEQWGYV
GAKSRQRWLFYAYDRIRRTVVAHVFGERTLATLERLPGLLSAFEVVVWMT
DDWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLARLGRKSLSFSKSV
ELHDKVIGHYLTIKHYQ
>SC0371 insF, putative IS3 transposase
MLASTPPTSTGVFNRALSSLAIACICKRYVWHQRRHQINRRQRFHLVCDN
VFREAFSDAKQRYGAPRLTDELRAQGYQFNVKTVAASLRRQGLRAKASRR
FRPVSYRKHGLPVSENLLKQDFYASGPNQKWVGDITYLRTGEGWLYLAVV
IDLWSRSVIGWSMSSRMTAQLACDALQMALWRRKCPENVIVHTDRGGQYC
STDYQSLLKRHNLRGSMSARGCCYDNACAESFFHTLKVECIHGEDFVSRE
IMRTAVFNYIECDYNRWRRHSACGGLSPEQFENQSLA
>SC2505 insF, putative IS3-like transposase
MVVDLFSRKVIGWSMQPRMTKDIVLNALLMAVWRRHPQKQVLVQSDQDSQ
YTRYEWLKLHGLEGSMSRCGNCHDNAVAESFFQLLKRERIKKKIYQRLRS
VQVIRGDSAQIRGI
>SC4193 insF, Transposase insF for insertion sequence IS3A/B/C/D
MPAEIAHLKRPLAEGDEELAILQNGRGILREAPEMKYVFIEKHQAEFSTK
AMCRVLQVARSGWYVWHQRRHQINQRQQFRLICDNVAREAFSDANSAMVR
HA
>SC3588 insK, Putative transposase insK for insertion sequence e
MSRKGNCLDNACAECFFGTLKSESFYTSKFKDIDELKIAIEDYIRYYNTR
RISLKFNGLSPVE
>SC2698 insM, conserved hypothetical protein
MVTLCHVFGIHRSNYKYWEKSPEKPDGRRAVLRNQVLELHNISHGSAGAR
SIAIMATMRGFRMGRWLAGRLMKELGLVSCQQPTHRYKRGGHEHIVIPNR
LERQFAVTEPNQVWCGDVTYIWTGKRWAYLAVVLDLFARKPVGWAMSFSP
DSRLTIKALGMAWEARGKPAEVMFHSDQGSHYTSRQFRQLLWRCRIRQSM
SRRGNCWDNSPMERFFRSLKNEWVPVTGYTNFSEAAHAITNYIVGYYSSL
RPHDYNGGLLPNESENRYWKNSKAVASFS
>SC2697 insN, Transposase insN for insertion sequence element IS
MICSPQNITGASMKKRNFSAEFKRESAQLVLDQNYTVAAAASAMDVGLST
MTRWVKQLRDERQGKIPKASPITPEQIEIRELKKKLQRIEMENDILKKAT
ALLMSDSLNSSR
>SC2854 int, putative integrase protein
MQADKTLNIGRDRLFNLLGEYRLLVPVKRAYHKTTNSHHRFYRHPNLLKP
GPEQVTALEPEQVWVADITYLPLRSGTAYLSLVTDACSRKIVGYHVGENL
QTENVVKAFRQALRRRKTTGPLVHHSDRGLQYCSVLYQSVHERNGITCSM
TDGYDCYQNALAERINGILKNEFLLSRPADLEQAREIVKESVAIYNHERP
HQALKYKTPDDVHQAFYRQKTVNLYQD
>SC1876 int, putative phage integrase protein
MIIPVVWSLTLAVMAFSLKYRSTAFSNSSGLRLPMNNFREAIVEGRITTN
PVESTRAPEIKVARERLQLETYNATRTAAEHLPVWFPLAMDLALVTGQRR
EDIVNMKFSDDFDNRLYVTQIKTGMKIAIPLSLTLQAPGLRPGTVIDRCR
LVSKTDFMISAGIRKNSPTGNIHPDGLTKKFVKARKISGAKFSDNPPTFH
EIRSLPGRLYKDELGEEFAQKLLGHTSENTTKLYLDERDNKAYVML
>SC2641 int, Gifsy-1 prophage Int
MVCVQKETSDQILRSFELHVFPKLGKYPAHQLTLHNWLTVLDRLAQGYTE
ITQRVISNGRQCYSWAVKRQLLEVNPLSEMSGRDFGIQKKMGERTLDRKE
IAIVWRAIEDSRLIERNKILYKLSLIWACRVGELRQAEVSHFDFEEGVWT
VPWENHKTGRKSKKPIIRPIISEMLPLIQRAIELAPGRFVFSKYADKPMS
EGFHMSISSNLVKFMLKAYNEQVPHFTIHDLRRTARTNFSELTEPHIAEM
MLGHKLPGVWSVYDKYTYIEEMREAYSKWWARLMSIIEPDVLEFTPRQTG
>SC2507 int, site-specific recombinase, phage integrase family
MLTDTRLRHLKPKEKLYKVNDRDGLYVAVTPAGTISFRYNYSINGRQETV
IFGHYGVGGITLAEARERLNEAKKMVAGGGSLETST
>SC0324 int, Int
MSLFRRGETWYASFTLPNGKRFKQSLGTKDKRQATELHDKLKAEAWRVSK
LGETPDMTFEDACVRWLEEKAHKKSLDDDKSRIGFWIQHFAGMQLKDITE
TKIYSAIQKMTNRRHEENWKLMDEACRKKGRQPPVFKPKPAAVATKATHL
SFIKALLRAAEREWKMLDKAPIIKIPQPKNKRIRWLEPHEAKRLIDECPE
PLKSVVEFALSTGLRRSNIINLEWQQIDMQRKVAWIHPEQSKSNQAIGVA
LNDTACRVLKKQIGNHHKWVFVYKESSTKPDGTKSPVVRKMRYDANTAWR
AALKRAGIEDFRFHDLRHTWASWLVQAGVPISVLQEMGGWESIEMVRRYA
HLAPNHLTEHARQIDSIFGTSVPNMSHSKNKEGTNNT
>SC2883 int, putative integrase protein
MQADKTLNIGRDRLFNLLGEYRLLVPVKRAYHKTTNSHHRFYRHPNLLKP
GPEQVTALEPEQVWVADITYLPLRSGTAYLSLVTDACSRKIVGYHVGENL
QTENVVKAFRQALRRRKTTGPLVHHSDRGLQYCSVLYQSVHERNGITCSM
TDGYDCYQNALAERINGILKNEFLLSRPADLEQAREIVKESVAIYNHERP
HQALKYKTPDDVHQAFYRQKTVNLYQD
>SC2005 int, putative P4-type integrase
MFSIGVYPAVSLADARQRRDEVKRLLDQGIDPNAKNRLMKKSFRKSAIKP
ARSVSSPKADAP
>SC1190 intE, Prophage lambda integrase (Int(Lambda))
MAARPRKNNVKVPNLYPLYSRKVNKIYWRYKHPVTGKFHSLGTNEEEAIA
IASEANARLAEQRTRQILAISDRIASSKGKAITTSTWLDRYWKIQGERLE
SGDIKPNTYKQKAKPVTLLRERVGMKIISSVDVRDIAEILEEYISDGQPR
MAQVIRSVLIDVFKEAQHFGEVPPGYNPALATKQPRRRITRQRLNLEEWQ
RIFNIADANHQYMGNAMLLALVTGQRLGDISKMKFSDIWDDQLHIVQEKT
GSKIAIPLSLRLNAINWSLRDVVTRCRDYAVSPYLVHFFRTTSQAERGAQ
VKSHTITMNFSKARDKADIDWGSGTPATFHEQRSLAERLYEAQGINTQKL
LGHKSPNQTARYHDDRGKGWTIIAV
>SC0963 intQ, Gifsy-2 prophage integrase
MANASYPTGVENHGGSLRIWFLYKGKRVRENLGIPDTAKNRKIAGELRSS
VCFAIRMGNFNYVEKFPNSPNLARFGQDRKEITVLELTERWSELKRMEIS
SNTMSRYESIIKNMLPLIGENKMVSAVTTEDLLYVRKELLTGFQVMKKDH
RTQVKGRKSSTVNNYMMLMAEIFQFGTDNGYAKENPFSGINRLKKAKGEP
DPLTTDEFIRFIQAYGHQQMRNLWSLAVYTGMRHGELCGLAWEDIDLHAG
TIIVKRNLTQTDEFTLPKTDAGTDRVIYLIQPAIDALRNQAQLTRLGRQF
EVEVKLREYGQSVIQPCTFVFSPQCVKRGPRTGYHYAVNSINKIWAPIIK
RAGIRYRNAYQSRHTYACWSLSAGANPNFIATQMGHTDAQMVYKVYGKWM
SEKSAEQVSLLNQALSRYAPSLPAW
>SC1648 intR, Putative lambdoid prophage Rac integrase
MTAGANPAFIASQMGHETAQMVYEIYGMWIDDMNDEQVAMLNARLS
>SC0299 istB, hypothetical protein
MKAKLENRLERQLQQLSYARGLILDEIGYLPMTSEEASLFFRLLNRRYEK
ASIILTSNKGFADWGEMFGDNVLATAILDRLLHITQPH
>SC2425 lig, DNA ligase
MEPIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRP
DLITPDSPTQRVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQD
RLKSTENVIWCCELKLDGLAVSILYENGVLVSAATRGDGTTGEDITSNVR
TIRAIPLKLHGDNIPARLEVRGEVFLPQAGFEKINEDARRTGGKVFANPR
NAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGELPDTHLGRLLQFKAWG
LPVSDRVTLCDSPQAVLDFYRNVEKDRPTLGFDIDGVVIKVNSLALQEQL
GFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAG
VLVSNATLHNADEIERLGLRIGDKVVIRRAGDVIPQVVNVVLSERPEETR
PIVFPTHCPVCGSDVERVEGEAVTRCTGGLICGAQRKESLKHFVSRRAMD
VDGMGDKIIDQLVEREYVHTPADLFRLTAGKLTGLDRMGPKSAQNVVNAL
EKAKATTFARFLYALGIREVGEATAEGLAAYFGTLEALQAATIDELQKVP
DVGIVVATHVFNFFAEESNRDVIVQLLAEGVHWPAPVVINVQEIDSPFAG
KTVVLTGSLSQMSRDDAKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLA
KAQELGITVIDEAEMIRLLGA
>SC1166 mfd, transcription-repair coupling factor
MPEKQRYTLPTKAGDQRQLGELTGAACATLVAEIAERHAGPVVLIAPDMQ
NALRLHDEIRQFTDQMVMNLADWETLPYDSFSPHQEIISSRLSTLYQLPS
MQRGVLIVPVNTLMQRVCPHSYLHGHALVMKKGQRLSRDALRAQLDSAGY
RHVDQVMEHGEYATRGALLDLFPMGSEQPYRLDFFDDEIDSLRLFDADTQ
RTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDAEHIYQQVSK
GTLPAGIEYWQPLFFSEPLPPLFSYFPANTLVVNTGSLETSAERFQADTL
ARFENRGVDPMRPLLPPEALWLRVDELFSELKRWPRLQLKTDHLPEKAAN
TNLGFQKLPDLAIQAQQKAPLDALRKFLESFSGPVIFSVESEGRREALGE
LLARIKIAPKRILRLDEAQDAGRYLMIGAAEHGFIDTQRNLALICESDLL
GERVARRRLDSRRTINPDTLIRNLAELHVGQPVVHLEHGVGRYAGMTTLE
AGGIKGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEESAPLHKLGGDAW
SRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFE
TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHK
QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAA
EGKIDILIGTHKLLQSDVKLRDLGLLIVDEEHRFGVRHKERIKAMRADVD
ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLVVRE
AILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMREREL
ERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLR
GRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDL
EIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQ
QTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKNENELEEIKVELIDRF
GLLPDPARNLLDIARLRQQAQKLGIRKLEGNEKGGTIEFAEKNHVDPAWL
IGLLQKQPQHFRLDGPTRLKFIQDLSERKTRIDWVRQFMQQLEENAIA
>SC0398 mod, DNA methylase; restriction system
MLKDNQKHNESVAPNSAFLSELQRALPEFFTADRYNEQGELIAKGGFDLA
RFERALKARNIDELTSGYQIDFIGKDYAKKQAGEKSVTVIVPDVEHNTLA
ENKNSHNLFLTGDNLDVLRHLQNNYADTVDMIYIDPPYNTGSDGFVYPDH
FEYSDRALQDMFGLNDTELARLKSIQGKSTHSAWLSFMYPRLFLARKLLK
DTGFIFISIDDNEYANLKLMMDEIFGEGGFVTNVMWKRKKEISNDSDNVS
IQGEYILVYAKTGQGALRLEPLSKEYIQKSYKEPTEQFPEGKWRPVPLTV
SKGLSGGGYTYKITTPNGTVHERLWAYPEASYQKLVADNLVYFGKDNGGI
PQRVMYAHHSKGQPTTNYWDNVASNKEGKKEILDLFGDNVFDTPKPTALL
KKIIKLAIDKDGVVLDFFAGSGTTAHAVMALNEEDGGQRTFILCTIDQAL
SNNTIAKKAGYNTIDEISRERITRVAAKIRANNPATNSDLGFKHYRFATP
TQQTLDDLDSFDIATGHFINTSGQLAAFTESGFTDMINPFSARGLGVPGG
ASGEETLLTTWLVADGYKMDIDVQTIDFSGYCARYVDNTRLYLIDERWGT
EQTRDLLNHIGTHQLPVQTIVIYGYSFDLESIRELEIGLKQLDQKVNLVK
RY
>SC4351 mta, hypothetical protein
MNGIESLLKQQDLSVPLSTAQGVSNVPFQRWFKFKEAFSPKFVHDTIQKS
LIKVDKILDPFGGSGTTALTSQLMGINPTTIEVNPFLADLIESKLTEYNT
QKLISDWVFVSKNVGLENPSLETMFSNAPKTLFEDKDVERWIFNREIIFR
IAQYREIIKKLDDLKNSRLFRVLLGSIMIPFSNVIINGKGRRYRKNWEIL
SFTKSAFDEAFRLKVEEAIFDIVRYSNIKSGTYDFFNGDSRSVLSSLDCK
QDLIVFSPPYPNSFDYTDIYNVELWALGYLNSASDNKLLRSNTLRSHVQI
KMDASPMPDSLTLSSTLEKLDAKVKLLWNKNIPSMVNNYFYDLNVILENS
MRLLNNNGMAVVVIGDSKYVDVKIDTVKITCELAKKIGFTVRETQEIRIM
KASAQQGWSKSLSETAIYLGKDI
>SC3159 mug, DNA glycosylase, G/U mismatch specific
MVKDILAPGLRVVFCGINPGLSSANTGFPFAHPANRFWKVIHLAGFTDRQ
LKPEEAEKLLDFRCGVTKLVDRPTVQATEVKLHGLRSGGRNLIEKIEDYQ
PAALAVLGKQAFEQGFSQRGIAWGKQKIAIGATMVWVLPNPSGLNRIKTE
KLVEAYRELDQALIMRGL
>SC2944 mutH, methyl-directed mismatch repair protein
MSALCPLLTPPASEALLLAQARQLSGYTLGELAAMAGITTPKDLKRDKGW
IGVLLEIWLGASAGSKPEQDFAALGVELKTIPVDSLGRPLETTFVCVAPL
TGNSGVTWETSHVRHKLKRVLWVPVEGDRSIPLAERRVGSPLLWSPSEEE
DRQLRLDWEELMDMIVLGQVERITARHGEVLQLRPKAANSRALTEAIGAR
GEPILTLPRGFYLKKNFTQALLARHFLLQNP
>SC4235 mutL, enzyme in methyl-directed mismatch repair, stimulates binding of Vsr and MutS to heteroduplex DNA
MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRVDIDIERGG
AKLIRIRDNGCGIKKEELALALARHATSKIASLDDLEAIISLGFRGEALA
SISSVSRLTLTSRTAEQAEAWQAYAEGRDMDVTVKPAAHPVGTTLEVLDL
FYNTPARRKFMRTEKTEFNHIDEIIRRIALARFDVTLNLSHNGKLVRQYR
AVAKDGQKERRLGAICGTPFLEQALAIEWQHGDLTLRGWVADPNHTTTAL
TEIQYCYVNGRMMRDRLINHAIRQACEDKLGADQQPAFVLYLEIDPHQVD
VNVHPAKHEVRFHQSRLVHDFIYQGVLSVLQQQTETTLPLEEIAPAPRHV
PENRIAAGRNHFAVPAEPTAAREPATPRYSGGASGGNGGRQTAGGWPHAQ
PGYQKQQGEVYRALLQTPTTSPVPEPVAPALDGHSQSFGRVLTIVGGDCA
LLEHAGTIQLLSLPVAERWLRQAQLTPGQSPVCAQPLLIPLRLKVSADEK
AALQQAQSLLGELGIEFQSDAQHVTIRAVPLPLRQQNLQILIPELIGYLA
QQTTFATVNIAQWIARNVQSEHPQWSMAQAISLLADVERLCPQLVKAPPG
GLLQPVDLHSAMNALKHE
>SC3649 mutM, formamidopyrimidine DNA glycosylase
MPELPEVETSRRGIEPHLVGATILHAHIRNGRLRWPVSDEIYRLSDTPVL
SVQRRAKYLLLELPDGWIIIHLGMSGSLRILPEALPAEKHDHVDLVMSNG
KILRYTDPRRFGAWLWTKELEGHNVLAHLGPEPLSGEFNGEYLQQKCAKK
KTAIKPWLMDNKLVVGVGNIYASESLFAAGIHPDRLASSLSTEECDLLAR
VIKAVLLRSIEQGGTTLKDFLQSDGKPGYFAQELQVYGRKGEPCRVCGTP
IVATKHAQRATFYCRHCQK
>SC2841 mutS, methyl-directed mismatch repair, recognize exocyclic adducts of guanosine
MNESFDKDFSNHTPMMQQYLKLKAQHPEILLFYRMGDFYELFYDDAKRAS
QLLDISLTKRGASAGEPIPMAGIPHHAVENYLAKLVNQGESVAICEQIGD
PATSKGPVERKVVRIVTPGTISDEALLQERQDNLLAAIWQDGKGYGYATL
DISSGRFRLSEPADRETMAAELQRTNPAELLYAEDFAEMALIEGRRGLRR
RPLWEFEIDTARQQLNLQFGTRDLVGFGVENASRGLCAAGCLLQYVKDTQ
RTSLPHIRSITMERQQDSIIMDAATRRNLEITQNLAGGVENTLAAVLDCT
VTPMGSRMLKRWLHMPVRNTDILRERQQTIGALQDTVSELQPVLRQVGDL
ERILARLALRTARPRDLARMRHAFQQLPELHAQLETVDSAPVQALRKKMG
DFAELRDLLERAIIDAPPVLVRDGGVIAPGYHEELDEWRALADGATDYLD
RLEIRERERTGLDTLKVGYNAVHGYYIQISRGQSHLAPINYVRRQTLKNA
ERYIIPELKEYEDKVLTSKGKALALEKQLYDELFDLLLPHLADLQQSANA
LAELDVLVNLAERAWTLNYTCPTFTDKPGIRITEGRHPVVEQVLNEPFIA
NPLNLSPQRRMLIITGPNMGGKSTYMRQTALIALLAYIGSYVPAQNVEIG
PIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATENSLVLMDEIGRG
TSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVHLD
ALEHGDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLRELES
ISPNAAATQVDGTQMSLLAAPEETSPAVEALENLDPDSLTPRQALEWIYR
LKSLV
>SC0134 mutT, 7,8-dihydro-8-oxoguanine-triphosphatase, prefers dGTP
MKKLQIAVGIIRNPNDEIFITRRAADAHMANKLEFPGGKIEAGETPEQAL
IRELQEEVGITPTQVTLFDTLEYQFPDRHITLWFWLVERWDGEPWGKEGQ
PGRWIAQNALSTDDFPPANEPIIRKLRQFAL
>SC3051 mutY, adenine DNA glycosylase
MQASQFSAQVLDWYDKYGRKTLPWQINKTPYKVWLSEVMLQQTQVTTVIP
YFERFMARFPTVTDLANAPLDEVLHLWTGLGYYARARNLHKAAQQVATLH
GGEFPQTFAEIAALPGVGRSTAGAILSLALGKHYPILDGNVKRVLARCYA
VSGWPGKKEVENTLWTLSEQVTPARGVERFNQAMMDLGAMVCTRSKPKCT
LCPLQNGCIAAAHESWSRYPGKKPKQTLPERTGYFLLLQHNQEIFLAQRP
PSGLWGGLYCFPQFASEDELREWLAQRHVNADNLTQLNAFRHTFSHFHLD
IVPMWLPVSSLDACMDEGSALWYNLAQPPSVGLAAPVERLLQQLRTGAPV
>SC0734 nei, endonuclease VIII removing oxidized pyrimidines may also remove oxidized purines in absence of MutY and Fpg
MPEGPEIRRAADNLEAAIKGKPLTDVWFAFAQLKPYESQLTGQLVTRIET
RGKALLTHFSNGLTLYSHNQLYGVWRVIDTGEIPQTTRILRVRLQTADKT
ILLYSASDIEMLTAEQLTTHPFLQRVGPDVLNARLTPEEVKARLLSPRFR
NRQFSGLLLDQAFLAGLGNYLRVEILWQVGLTGQHKAKDLNEAQLNALSH
VLLDIPRLSYTTRGQADENKHHGALFRFKVFHRDGEACERCGGIIEKTTL
SSRPFYWCPHCQK
>SC4049 nfi, endonuclease V (deoxyinosine 3'endoduclease)
MDLASLRAQQIELASSVCREDRLDKDPPAFIGGADVGFEQGGEVTRAAMV
LLKYPSLELVEYKVARIATTMPYIPGFLSFREYPALLAAWEQLSQKPDLL
FVDGHGISHPRRLGVASHFGLLVDVPTIGVAKKRLCGKFEPLSAEPGALS
PLMDKGEQLAWVWRSKARCNPLFIATGHRVSTDSALAWVQRCMKGYRLPE
PTRWADAVASGRPAFVRWQEIQR
>SC2219 nfo, endonuclease IV
MKYIGAHVSAAGGLANAPARAAEIVATAFALFTKNQRQWRAAPLTPQVID
DFKIACEKYHFSAAQILPHDSYLINLGHPVSEALEKSRDAFLDEMQRCEQ
LGLTLLNFHPGSHLMQIAQEDCLARIAESINIALAQTEGVTAVIENTAGQ
GSNLGFEFEQLAAIIDGVEDKSRVGVCIDTCHAFAAGYDLRTPEACEKTF
AEFGKIVGFQYLRGMHLNDAKSAFGSRVDRHHSLGEGNIGHDAFRWIMQD
GRFDGIPLILETINPDIWAEEIAWLKAQQIAEAMA
>SC1471 nth, endonuclease III; DNA glycosylase/apyrimidinic (AP) lyase
MNKAKRLEILTRLRDSNPHPTTELNFTSPFELLIAVLLSAQATDVSVNKA
TAKLYPVANTPAAMLELGVEGVKSYIKTIGLFNSKAENVIKTCRILLDKH
NGEVPEDRAALEALPGVGRKTANVVLNTAFGWPTIAVDTHIFRVCNRTQF
APGKNVEQVEEKLLKVVPNEFKVDCHHWLILHGRYTCIAQKPRCGSCLIE
DLCEYKEKVDI
>SC1908 ntpA, dATP pyrophosphohydrolase
MKDKVYKRPVSVLVVIFAQDTKRVLMLQRRDDPDFWQSVTGSIEEGETAL
QAAVREVKEEVTIDVAAEQLTLIDCQRTVEFEIFSHLRHRYAPGVMHNTE
FWFCLALPHERQVIFTEHLTYQWLDAPDAAALTKSWSNRQAIEEFVINVA
>SC1323 nudG, putative mutator MutT protein
MIKKLDVVAAIIERDGKILLAQRPAHADQAGLWEFAGGKVEPGETQPQAL
IRELREELGIDATPGVYIASHQRDVSGRRIHLHAWHVPAFNGLIRALEHQ
ALAWCTPEEALEYPLAPADIPLLQAFMALRDARLTDSC
>SC1655 ogt, O-6-alkylguanine-DNA/cysteine-proteinmethyltrans ferase
MLRLLEEKIATPLGPLWVVCDEQFQLRAIEWEQYRDRMEQLLNIHYRHEG
YERVSATNPGGLSDKLADYFAGNLAVIDTLETATGGTPFQREVWQALRAI
PCGQVMHYGQLAAQLGRPGAARAVGAANGANPISIVVPCHRVIGRNGTLT
GYAGGVQRKEWLLRHEGYLLL
>SC3118 parC, DNA topoisomerase IV, subunit A
MAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELG
LNASAKFKKSARTVGDVLGKYHPHGDIACYEAMVLMAQPFSYRYPLVDGQ
GNWGAPDDPKSFAAMRYTESRLSKYAELLLSELGQGTADWVPNFDGTMQE
PKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAKAAITLIEQPKTTL
DQLLDIVQGPDYPTEAEIITPRAEIRKIYENGRGSVRMRAVWTKEDGAVV
ISALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRS
NRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAF
RRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPAL
MSRFGISETQAEAILELKLRHLAKLEEMKIRGEQDELEKERDQLQGILAS
ERKMNTLLKKELQADADAYGDDRRSPLREREEAKAMSEHDMLPSEPVTIV
LSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFIDTTGRSY
AIDPITLPSARGQGEPLTGKLTLPPGATVEHMLMEGDDQKLLMASDAGYG
FVCTFNDLVARNRAGKALITLPENAHVMPPLVIEDEHDMLLAITQAGRML
MFPVDSLPQLSKGKGNKIINIPSAEAAKGDDGLAHLYVLPPQSTLTIHVG
KRKIKLRPEELQKVVGERGRRGTLMRGLQRIDRIEIDSPHRVSHGDSEE
>SC3125 parE, DNA topoisomerase IV, subunit B
MTQTYNADAIEVLTGLEPVRRRPGMYTDTTRPNHLGQEVIDNSVDEALAG
HAKRVDVILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKF
SNKNYQFSGGLHGVGISVVNALSKRVEVTVRRDGQVYNIAFENGEKVQDL
QVVGTCGKRNTGTSVHFWPDESFFDSPRFSVSRLMHVLKAKAVLCPGVEI
TFKDEVNNSEQRWCYQDGLNDYLGEAVNGLPTLPEKPFIGNFNGETEAVD
WALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNI
LPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVV
KDAFSLWLNQNVQAAEQLAEMAIASAQRRLRAAKKVVRKKLTSGPALPGK
LADCTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEV
SSDEVLASQEVHDISVAIGIDPDSDDLSQLRYGKICILADADSDGLHIAT
LLCALFVRHFRALVKNGHVYVALPPLYRIDLGKEVYYALTEEEKAGVLEQ
LKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTISDEDDQRTN
AMMDMLLAKKRSEDRRNWLQEKGDLADLDV
>SC0728 phrB, deoxyribodipyrimidine photolyase (photoreactivation)
MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAHDMAPR
QAAFISAQLNALQAALAEKGIPLLFHEVADFNASIETVKNFCRQHDVSHL
FYNYQYQFNERQRDAAVEKTLPSVICEGFDDSVILAPGAVMTGNHEMYKV
FTPFKNAWLKRLKEDIPPCVPAPKIRVSGALSTPLTPVSLNYPQQAFDAA
LFPVEENAVIAQLRQFCAQGADEYALRRDFPAVDGTSRLSASLATGGLSP
RQCLHRLLAEQPQALDGGPGSVWLNELIWREFYRHLMTWYPALCKHQPFI
RWTKRVAWQENSHYFQAWQKGETGYPIVDAAMRQLNATGWMHNRLRMITA
SFLVKDLLIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRI
FNPTTQGERFDRDGEFIRQWLPALRDMPWKSDSRAVAVGGKSGSRA
>SC3891 polA, DNA polymerase I, 3'--> 5' polymerase, 5'--> 3' and 3'--> 5' exonuclease
MVQIPENPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLI
MQYQPTHAAVVFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVK
AMGLPLLAVSGVEADDVIGTLAREAEKVGRPVLISTGDKDMAQLVTPNIT
LINTMTNTILGPDEVVNKYGVPPELIIDFLALMGDSSDNIPGVPGVGEKT
AQALLQGLGGLDTLYAEPEKIAGLTFRGAKTMAGKLAQNKDVAYLSYKLA
TIKTDVELELTCEQLEVQQPIADELLGLFKKYEFKRWTADVESGKWLQAK
GAKPAAKPQETVVIDESPSEPAAALSYENYVTILDDVTLESWIEKLKKAP
VFAFDTETDSLDNIAANLVGLSFAIEPGVAAYVPVAHDYLDAPDQISRQR
ALELLKPLLEDEKVRKVGQNLKYDRGVLQNYGIELRGIAFDTMLESYILN
SVAGRHDMDSLSDRWLKHKTITFEDIAGKGKNQLTFNQIALEEAGRYAAE
DADVTLQLHLKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDPA
VLHKHSEEITLRLAELEKKAHDIAGEAFNLSSTKQLQTILFEKQGIKPLK
KTPGGAPSTSEEVLEELALDYPLPKVILEYRGLAKLKSTYTDKLPLMINP
KTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYL
IVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLDSVT
GEQRRSAKAINFGLIYGMSAFGLSRQLNIPRKEAQKYMDLYFERYPGVLE
YMERTRAQAKEQGYVETLEGRRLYLPDIKSSNAARRAGAERAAINAPMQG
TAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDLDAVAKRI
HQLMENCTRIDVPLLVEVGSGENWDQAH
>SC0092 polB, DNA polymerase II and and 3'--> 5' exonuclease
MAQAGFILTRHWRDTPQGTEVSFWLATDNGPVQATLAPQESVAFIPTSQT
SRAASLLQAEKDYRLTPLQLRDFHRQPVSGLYCRTHRQLMRMEKLLRENG
VTVYEADVRPPERYLMERFITSPVWVDGEMRNGVIRNARLKPHPDYRPPL
KWVSLDIETTRHGELYCIGLEGCGQRTVYMLGPANGDDRQLDFELVYVAS
RPQLLEKLNAWFAEHAPDVIIGWNVVQFDLRMLQKHAERYRIPLRLGRDN
SELEWREHGFKNGVFFAQARGRVIIDGIDALKSAFWNFSSFSLEAVSQEL
LGEGKSIDNPWDRMDEIDRRFAQDKPALATYNLKDCELVTRIFHKTEIMP
FLLERATINGLPVDRHGGSVAAFGHLYFPRMHRAGYVAPNLGEVPPLASP
GGYVMDSQPGLYDSVLVLDYKSLYPSIIRTFLIDPVGLVEGMAQPDPEHS
TEGFLDAWFSREKHCLPEIVSQIWHGRDEAKRQGNKPPSQALKIIMNAFY
GVLGTTACRFFDPRLASSITMRGHAIMRQTKALIEAQGYDVIYGDTDSTF
VWLRRAHSEADAAEIGHRLVRHVNEWWAQTLQQQNLTSALELEFETHFCR
FLMPTIRGADTGSKKRYAGLIQEGDSHRMVFKGLETVRTDWTPLAQRFQQ
ELYLRVFRNEPYQDYVRETIDKLMAGELDAQLVYRKRLRRPLHEYQRNVP
PHVRAARLADEQNLKQGRPAQYQNRGAIKYVWTVNGPEPVDYQQSPLDYE
HYLTRQLQPVAEGILPFVEDNFATLLTGQLGLF
>SC3984 priA, primosomal protein N' (= factor Y) directs replication fork assembly at D-loops
MSVAHVALPVPLPQTFDYLLPEGGVAKAGCRVRVPFGKQQERVGIVVSVS
DHSELPLDELKSVIEILDNEPIVSPSIWRLLLWAADYYHHPLGDVLFHAL
PVLLRQGKPASNAPLWYWFATEEGQAVDINSLKRSAKQQQALAALRQGKI
WRYQVAELDFTDATLQTLRRKGLCELASETPAFTDWRERYAVAGERLRLN
TEQATAVGAIHSASDGFSAWLLAGVTGSGKTEVYLSVLENVLAQGKQALV
MVPEIGLTPQTIARFRERFNAPVEVLHSGLNDSERLSAWLKAKNGEAAIV
IGTRSSLFTPFKNLGVIVIDEEHDSSYKQQEGWRYHARDLAVYRAHSEQI
PIILGSATPALETLCNVRQKKYRMLRLTRRAGNARPALQHALDLKGQRLQ
AGLAPALIARMRQHLQADNQVILFLNRRGFAPALLCHDCGWIAECPRCDH
YYTLHQAQHHLRCHHCDSQRPVPRQCPSCGSTHMLPVGLGTEQLEQVLAP
FFPGVPISRIDRDTTSRKGALEQHLAEVHRGGARILIGTQMLAKGHHFPD
VTLVALLDVDGALFSADFRSAERFAQLYTQVSGRAGRAGKQGEVVLQTHH
PEHPLLQTLLYKGYDAFAEQALAERQTLQLPPWTSHVIIRAEDHNNQQAP
VFLQQLRNLIQASPLSDDKLWILGPVPALAPKRGGRYRWQILLQHPSRIR
LQHIISGTLALINTLPEARKVKWVLDVDPIEG
>SC4266 priB, primosomal replication protein N
MTNRLALSGTVCRAPLRKVSPSGIPHCQFVLEHRSVQEEAGFHRQAWCQM
PVIVSGHENQAITHSITVGSRITVQGFISCHKAKNGLSKMVLHAEQIELI
DSGD
>SC0522 priC, primosomal replication protein N
MKTAMLLQTLEERLATLRQRCAPLAQHATLSARFDRHLFRTRSTLLQGYL
EEADANLAALRQAVKHEQLPQVAWLAEHLASQLEAISRETAAWSLRQWDT
AAPGLGRWQRRRIQHQEFERRLLAMTQERKIRLAQATGLVEQQTLQKEVE
IYEGRLARCRHALEKIENVLARLTR
>SC3652 radC, putative DNA repair protein, associated with replication forks
MDTLDELLPREKMLRSGIASLSDVELLALFLRTGTPGKDVMTLAKEILQH
FGSLYGLLSADFAQFRGVNGIGLAKFAQLKGIAELARRYYSVRMNEESAL
LSPEMTREFLQSQLTGEEREIFLVIFLDAQHRVLQHSRLFSGTLNHVEVH
PREIVREAIKLNASAVILAHNHPSGCAEPSKADKLITERVIKCCQFMDIR
VLDHLIIGRGEYVSFAERGWI
>SC0433 rdgC, putative exonuclease involved in removal of stalled replication fork
MAMQACRQFVTIPPGFNDKAVEIIMLWFKNLMVYRLSRDITLRAEEMEKQ
LASMTFTPCGSQDMAKMGWVPPMGSHSDALTHTANGQIIICARKEEKILP
SPVIKQALEAKIQKLEADQGRKLKKTEKDSLKDEVLHSLLPRAFSRFSQT
MMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLALENPIELTL
TEWVRSGTVAQGFQLLDEAELKAMLEDGGVIRAKKQDLVSDEIAVHIEAG
KVVTKLALDWQQRIQFVMCDDGSIKRLKFCDELRDQNEDIDREDFAQRFD
ADFILMTGELAALIQSLVEGLGGEAQR
>SC2762 recA, DNA strand exchange and recombination protein with proteiase and nuclease activity
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDI
ALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL
DPVYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAAL
TPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKI
GVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGDNVVGSETRVKVVKN
KIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYNGEKIG
QGKANATTWLKENPATAKEIEKRVRELLLSNQNATPDFAVDDSEGVAETN
EDF
>SC2932 recB, exonuclease V, beta chain
MNDVSETLDPLRLPLTGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAF
PRPLSVEELLVVTFTEAATEELRGRIRSNIHELRIACLRESTDNPLYARL
LEEISDKKQAAQWLLLAERQMDEAAVFTIHGFCQRMLSLNAFESGMLFEQ
QLIEDESLLRYQACADFWRRHCYPLPRDIAQVVFDVWKGPKALLKDIDRY
LQGEAPVIKAPPSQEETLASRHEQILARINQVKQQWCEAVSELDALIESS
GIDRRKFNRGNQAKWIEKITAWAQEETKNYQLPEALGKFSQRFLAERTKA
GGVTPQHPLFVAIDNLLGEPLSIKDLVLTRALSEIRETVAQEKRRRGELG
FDDMLSRLDTALRSESGEALAAAIRTRFPVAMIDEFQDTDPQQYRIFRRI
WRHQPDTALLLIGDPKQAIYAFRGADIFTYMKARSEVSAHYTLDTNWRSA
PGMVNSVNKLFSQMNDTFMFRDIPFSPVKFAPRNQSLQFKVNDAPQPAMT
LWLMEGESCGSGDYQSYMAQVCATQIRDWLRAGQTGDALLTNGDSSRPVR
ASDISVLVRSRREAALIRDALTLLAIPSVYLSNRDSVFETLEAQEMLWVL
QAVMAPERENTLRSALATSMMGLTALDIETLNNDENAWDAVVEEFDGYRQ
IWHKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQEAGSQ
LESEHALVRWLAQHILEPDSNASSQQLRLESDKHLVQIVTIHKSKGLEYP
LVWLPFITHFRVQDQAFYHDRHSYEAVLDLSHAEESIALAEAERLAEDLR
LLYVALTRAVWHCSLGVAPLVRRRSDKKGETDVHQSALGRLLQKGEPMDA
AGLRACIEALCDEDIVCRTPGNTDNDRWQIAAASHAELSARTLQRLLYDS
WRVTSYSGLQQRGHSVAQDLIPRLDIDAAGVGEAAEAPAMTPHHFPRGAS
PGTFLHSLFEELDFTQPIDPQWVQEKLELSGFETRWEPVLTRWLDTVLHV
PLNETGVSLSVLTEREKQVEMEFYLPIAQPLTAGELDALIRRYDPLSAGC
PALDFMQVRGMLKGFIDLVFRYEGRYYLLDYKSNWLGEDSAAYTQTAMAA
VMQAHRYDLQYQLYTLALHRYLRHRMANYDYERHFGGVIYLFLRGVDSER
PQQGIFTTRPAAALINQLDDMFAGEMSEEAQ
>SC2934 recC, exonuclease V, subunit
MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTL
SQKFGIAANIAFPLPASFIWEMFVRVLPDIPKESAFSKQSMSWKLMTLLP
QLLDKDEFVLLRHYLTDDTDKRKLFQLSARAADLFDQYLVYRPDWLTQWE
AGKTVEGLGEAQNWQAPLWKALVEYTAALGQPRWHRANLYQRFIQTLESA
TACPPGLPSRVFICGISALPPVYLRALQALGKHIEIHLLFTNPCRYYWGD
IKDPAWLAKLMARQRRHTFEDRHLPLFRENQNPEALFNSDGEQDIGNPLL
ASWGKLGRDYIYLLSELENSQELDAFVDITPDNLLHRIQADILELESHAV
AGVNLEEYSRSDNKRLLDPEDNSLSFHVCHSPQREVEILHDRLLAMLEAD
PTLTPRDIIVMVADIDSYSPFIQAVFGSAPTERYLPYAISDRRARQSHPV
LQAFISLLSLPDSRFVSEDVLALLDVPVLAARFTINEEGLRYLRLWVNES
GIRWGIDDDNVRELELPATGQHTWQFGLTRMLLGYAMESAQGEWQSVLPY
DESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNDFFL
PDADTEAAMTLIEQQWQAIIAEGVAAEYGDAVPISLLRDELAQRLDQERI
SQRFLAGPINICTLMPMRSIPFRVVCLLGMNDGVYPRQLAPLGFDLMSQK
PMRGDRSRRDDDRYLFLEALISAQQTLYISYIGRSIQDNSERFPSVLVQE
LVDYIGQSHYLPGDETLTCDESEARVKAHITRLHTRMPFDAQNYQPGEQQ
SYAREWLPAASQSGKAHSDFVQPLPFTMPETLTLESLQRFWAHPVRAFFQ
MRLQVNFRSEESEIPDAEPFELEGLTRYQLNQQLLNTLVEEDDVERLFRR
FRAAGELPYGAFGEIFWDAQCQEMQQLASRVIACRKPSQSLEVDLLCNGV
QLTGWLPQVQEDGLLRWRPALISVAQGVKLWLEHLVYCASGGSGESRLFL
RKEGEWRFPSLDKAQAMAYLAQLIEGYREGMSSPLLVLPESGGAWIKACY
DAENDVMLDDDDTLQKARTKFLQAYEGNMMVSGEGEDIWYQRLWRQLESE
TLQAIIAQSRHYLLPLFRFNQSR
>SC2931 recD, exonuclease V, alpha chain
MTIQERLLEAVEQKLLRPIDAQFALTVAGNDDPAVTLAAALLSHDAGEGH
VCLPLSRLTLTEEAHPLLVAWISETATPIDWKKRLLESAAVSCGDRPAPL
ILCGDRLYLNRMWCNERTVARFFNEVNQAIAVDEDQLSRILDALFPPTEE
VNWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIR
LAAPTGKAAARLTESLGAALRQLPLTDAQKKRIPEDASTLHRLLGAQPGS
QRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPPHGRVIFLGDRDQ
LASVEAGAVLGDICAYVNAGFTAERARQLSRLTGSAIPAGAGTQAASLRD
SLCLLQKSYRFGSDSGIGKLAAAINCGDRSAIQAVFQQGFSDIEKRTLQS
SDDYAGMLDEALAGYGRYLRLLHEKATPEAILQAFNEYQLLCALREGPFG
VRGLNDRIEQAMVQQRKIQRHPHSRWYEGRPVMIARNDSALGLFNGDIGI
ALDRGQGLRVWFVMPDGTIKSVQPSRLPEHDTTWAMTVHKSQGSEFDHAA
LILPSQRSPVVTRELVYTAVTRARRRLSLYADERILAGAIVTRTERRSGL
ATLFDEVSRTG
>SC3754 recF, gap repair protein
MSLTRLLIKDFRNIENADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGR
AFRSLQPGRVIRHEQEAFVLHGRLQGEERETSIGLTKDKQGDSKVRIDGT
DGHKIAELAHLMPMQLITPEGFTLLNGGPKYRRAFLDWGCFHNEAGFFTA
WSNLKRLLKQRNAALRQVSRYEQLRPWDKELIPLAEQISTWRAEYSSAIA
QDMADTCQQFLPEFSLTFSFQRGWEKETDYADVLERSFERDRMLTYTAHG
PHKADFRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCLYL
IDDFASELDDARRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTV
EKGKITD
>SC3668 recG, DNA helicase, resolution of Holliday junctions, branch migration
MSGRLLDAVPLNSLTGVGAAQSSKLAKIGLHTVQDLLLHLPLRYEDRTHL
YPIGELLPGIYATVEGEVLNCNITFGGRRMMTCQISDGSGILTMRFFNFN
AAMKNSLATGRRVLAYGEAKRGKYGTEMIHPEYRLQGDLSTPELQETLTP
VYPTTEGVKQATLRKLTDQALELLDTCAIAELLPPELAQGMMSLPEALRT
LHRPPPMLQLADLETGKHPAQRRLILEELLAHNLSMLALRAGAQRYHAQP
LSTNNILKDKLLASLPFKPTSAQARVVAEIERDMALDVPMMRLVQGDVGS
GKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFEPLGVEVGW
LAGKQKGKARQAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQH
RFGVHQRLALWEKGQQQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDE
LPPGRTPVTTVAIPDTRRHEIIDRVRNACTTEGRQAYWVCTLIEESDLLE
AQAAEATWEELKLALPELNIGLVHGRMKPAEKQAVMQAFKQGELHLLVAT
TVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVVSHCVLLYKS
PLSKTAQKRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVAD
LLRDQAIIPEVQRIARHIHERYPQQAQALIERWMPETERYSNA
>SC2982 recJ, ssDNA exonuclease, 5'--> 3' specific, Mg dependent
MKQQRQLRRREADETAELPADLPPLLRRLYASRGVRSARELERSVKGMLP
WQQLSGIDNAVEILYNAFREGTRIIVVGDFDADGATSTALSVLGMRALGC
DNISYLVPNRFEDGYGLSPEVVDQAKARGAQLIVTVDNGISSHAGVAHAK
TLGIPVIVTDHHLPGDTLPDAEAIINPNLRDCEFPSKSLAGVGVAFYLML
ALRTFLRDKGWFDERGIAPPNLAELLDLVALGTVADVVPLDANNRILTWQ
GLSRIRAGKCRPGIKALLEISNRDPQQLAASDLGFALGPRLNAAGRLDDM
SVGVALLLCDNLGEARVLASELDALNQTRKEIEQGMQAEALILCEKLERS
SETLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSG
RSIQGLHMRDALERLDTLYPDLMIKFGGHAMAAGLSLEEHKFEQFQQRFG
ELVTEWLDPALLQGEVISDGPLSAAEMSMEVAQLLRDAGPWGQMFPEPLF
DGRFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNIDTTCWPDNGVREV
ELAYKLDINEFRGNRSLQIIIDDIWPL
>SC2684 recN, recombination and DNA repair protein
MLAQLTISNFAIVRELEIDFQSGMTVITGETGAGKSIAIDALGLCLGGRA
EADMVRTGATRADLCARFALKDTPAALRWLEENQLEEGRECLLRRVISSD
GRSRGFINGTAVPLSQLRELGQLLIQIHGQHAHQQLTKPEQQKSLLDSYA
NEAALAQQMAARYQLWHQSCRDLAHHQQQSQERAARAELLQYQLKELNDF
NPQAGEFEQIDEEYKRLANSGQLLTTSQNALALLADGEDVNLQSQLYSAK
QLVSELVGMDSKLSGILDMLEEATIQLTEASDELRHYCERLDLDPNRLFE
LEQRIAKQISLARKHHVSPEALPQLYQSLLEEQQQLDDQADSLETLTLAV
NKHHQQALETAQALHQQRQFYAQELGQLITESMHLLSMPHGLFTIDVKFD
EHHLSNDGADRVEFKVTTNPGQPLQPIAKVASGGELSRIALAIQVITARK
METPALIFDEVDVGISGPTASVVGKLLRQLGESTQVMCVTHLPQVAGCGH
QHFFVSKETDGAMTETHMQPLDKRARLQELARLLGGSEVTRNTLANAKEL
LAA
>SC2574 recO, gap repair gene
MEGWQRAFVLHSRPWSETSLMLDVFTEESGRVRLVAKGARSKRSNLKGAL
QPFTPLLLRYSGRGEVKTLRSAEAVSLALPLSGITLYSGLYINELLSRVL
EYETRFSELFFDYLNCIQALAGTTGSPEPALRRFELALLGHLGYGVNFTH
CAGSGERVDDTMTYRYREEKGFFASVVIDNNTFTGRHLKALEAREFPDVD
TLRAAKRFTRMALKPYLGGKPLKSRELFRQFMPKRTVKTKKD
>SC3857 recQ, ATP-dependent DNA helicase
MVNGVNVAQAEVLNLESGAKQVLQETFGYQQFRPGQEAIIDTALSGRDCL
VVMPTGGGKSLCYQIPALLLDGLTVVVSPLISLMKDQVDQLLANGVAAAC
LNSTQSREQQLEVMAGCRTGQIRLLYIAPERLMLDNFLDHLAHWNPVLLA
VDEAHCISQWGHDFRPEYAALGQLRQRFPALPFMALTATADDTTRQDIIR
LLGLNDPLIQISSFDRPNIRYMLMEKFKPLDQLMRYVQEQRGKSGIIYCN
SRAKVEDTAARLQSRGISAAAYHAGLENAIRADVQEKFQRDDLQIVVATV
AFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPAD
MAWLRRCLEEKPAGQLQDIERHKLNAMGAFAEAQTCRRLVLLNYFGEGRQ
EPCGNCDICLDPPKQYDGLNDAQIALSTIGRVNQRFGMGYVVEVIRGANN
QRIRDFGHDKLKVYGMGREKSHEHWVSVIRQLIHLGLVMQNIAQHSALQL
TDAARPVLRGDVPLKLAVPRIVALKPRVMQKSFGGNYDRKLFAKLRKLRK
AIADEENIPPYVVFNDATLIEMAEQMPVSASEMLSVNGVGMRKLERFGKE
FMALIRAHVDGDDEE
>SC0527 recR, putative recombination protein, gap repair
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRA
MSEIGHCADCRTFTEQDVCNICSNPRRQENGQICVVESPADIYAIEQTGQ
FPGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLASEKISELILATNPTVEG
EATANYIAELCAEAGVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKII
F
>SC1871 recT, RecT protein
MSAPSFSVPSLGWNPAARSVMPICYRSETETKSQAKKNVQLIIGYRGMID
LARRSGQIASLSARVVREGDDFSFEFGLEEKLVHRPGENEDAQVTHVYAV
ARLNRSLPTGKPN
>SC1870 recT, RecT protein
MPGLALPDGAALQVDGVPAVATTEIRKVPALGDCDTMSFVSAIVQCSQLG
LEPGGALGHAYLLPFGNRNEKSGKKKRSVNYWLPGNDRPCPPFRTDCKSF
RARRPRR
>SC4304 relB, putative helix-turn-helix protein, copG family
MATLNVRLDDKLKNEAYAVLEKLNITPTEAVRLLFQYVAETGRMPVKTVT
LSDSEDALIQTVRERLSSPQKGIKVSLDDL
>SC3818 rep, rep helicase, a single-stranded DNA dependent ATPase
MTFSRLPEKAAWSSLGLAFCYNPSPVRRLSTIPMRLNPGQQHAVEFVTGP
CLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERV
GQTLGRKEARGLMISTFHTLGLDIIKREYAALGMKSNFSLFDDSDQVALL
KELTEGLIEDDKVLLQQLISTISNWKNDLKTPAQAAAGAKGERDRIFAHC
YGLYDAHMKACNVLDFDDLILLPTLLLQRNDEVRERWQNKIRYLLVDEYQ
DTNTSQYELVKLLVGQRARFTVVGDDDQSIYSWRGARPQNLVLLSQDFPA
LQVIKLEQNYRSSGRILKAANILIANNPHVFEKRLFSELGYGAELKVLSA
NNEEHEAERVTGELIAHHFVNKTQYKDYAILYRGNHQSRVFEKFLMQNRI
PYKISGGTSFFSRPEIKDLLAYLRVLTNPDDDSAFLRIVNTPKREIGPAT
LQKLGEWAMTRNKSLFTASFDMGLSQKLTGRGYDSLTRFTHWLGEIQRLA
EREPVAAVRDLIHGIDYESWLYETSPSPKAAEMRMKNVNQLFSWMTEMLE
GNELDEPMTLTQVVTRFTLRDMMERGESEEELDQVQLMTLHASKGLEFPY
VYMVGMEEGFLPHQSSIDEDNIEEERRLAYVGITRAQKELTFTLCKERRQ
YGELVRPEPSRFLLELPQDDLIWEQERKVVSAEERMQKGQSHLANLKAMM
AAKRAKS
>SC3820 rhlB, putative helicase
MSKTHLTEQKFSDFALHPQVVEALEKKGFYNCTPIQALALPLTLAGRDVA
GQAQTGTGKTMAFLTSTFHYLLSHPAIDDRKVNQPRALIMAPTRELAVQI
HADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAK
QNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPAAQRLNMLFSAT
LSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTL
IEEEWPDRAIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILD
EFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRA
GASGHSISLACEEYALNLPAIESYIGHSIPVSKYNPEALMNDLPKPLRLT
RSRPGNGPRRAGAPRNRRRSG
>SC0817 rhlE, putative ATP-dependent RNA helicase
MSFDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTG
KTAGFTLPLLQHLITHQPHAKGRRPVRALILTPTRELAAQIGENVRDYSK
YLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQI
EILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEK
LLRNPLEIEVARRNTASEQVTQHVHFVDKKRKRELLSQMIGQGNWQQVLV
FTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLV
ATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVC
VDEHKLLRDIEKLLKKESPRITTPGYEPDPSIKAEPIQNGRQQRGGGGRG
RGQNQGGAGRSQQPRRQDSGAAKAKPKPRTGEGKPAGDKARPPRRPRRIT
PAQ
>SC0259 rnhA, RNase HI, degrades RNA of DNA-RNA hybrids
MDDQLRAADIIKKLIDHISKNRLIQQKLIGNTVYAKRLRIHQPIRLQVNM
KIVAGQTTVYHLNRTDLNNLVTFIVRAYLVHTGGFGIEDNLSCNCSAHIG
HLCQTCVLLSISITGSLPEMLKQVEIFTDGSCLGNPGPGGYGAILRYRGH
EKTFSEGYTLTTNNRMELMAAIVALEALKEHCEVTLSTDSQYVRQGITQW
IHNWKKRGWKTAEKKPVKNVDLWKRLDAALGQHQIKWVWVKGHAGHPENE
RCDELARAAAMNPTQEDSGYQAEA
>SC0230 rnhB, RNAse HII
MIEFVYPHTHLVAGVDEVGRGPLVGAVVTAAVILDPARPIVGLNDSKKLS
EKRRLSLYDEIKEKALSWSLGRAEAHEIDELNILHATMLAMQRAVAGLHI
APEYVLIDGNRCPALPVPSMAVVKGDSRVAEISAASILAKVTRDAEMAAL
DIVFPQYGFAQHKGYPTAFHLEKLAQYGATAHHRRSFAPVKRALGLVS
>SC1453 rnt, RNase T, degrades tRNA, has exonuclease and ssDNAse activity
MSDNAQLSGLCDRFRGFYPVVIDVETAGFNAKTDALLEIAAITLKMDEQG
WLMPDTTLHFHVEPFAGANLQPEALAFNGIDPSNPLRGAVSEYEALHAIF
KMVRKGIKDSGCSRAIMVAHNATFDHSFMMAAAERASLKRNPFHPFVTFD
TAALSGLALGQTVLSKACLAAGMEFDGEKAHSALYDTERTAVLFCEIVNR
WKRLGGWPLPLPTDK
>SC0344 rusA, Rus
MNEYRIALPWPPSNNRYWRHSRGIHYISDWGKRYRREVIEIIQQQQLDLK
ITPRIRITILAAPPDNRKRDLDNLPKAVFDALTSAGFWLDDGQIDDMRIK
RCQAVKGGMLVLVVTETCGNLPMITELLEAA
>SC1203 rusA, crossover junction endodeoxyribonuclease
MKLTLPFPPSVNTYWRHPNKGPFAGKSLISVAGRKFRSATCAAIIEQLRR
LPKPTSTHAAVEIILYPPDKRIRDLDNYNKALFDALTHAGVWEDDSQVKR
MLVEWGPVFPKGKVEITITKFETRAGAAA
>SC1903 ruvA, Holliday junction helicase subunit A
MIGRLRGIILEKQPPIVLLETGGVGYEVHMPMTCFYELPEAGQEAIVFTH
FVVREDAQLLYGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVN
AVEREELGALVKLPGIGKKTAERLIVEMKDRFKGLHGDLFTPAVDLVLTS
PASPTSEDAEQEAVAALVALGYKPQEASRMVNKIARPDASSETLIRDALR
AAL
>SC1902 ruvB, Holliday junction helicase, subunit B
MIEADRLISAGATIAEDVADRAIRPKLLAEYVGQPQVRSQMEIFIQAAKL
RGDALDHLLIFGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAM
LTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIGEGPAARSIKI
DLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYQVPDLQHIVGRSARHM
GLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGAISAEIAAQA
LDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDV
LEPYLIQQGFLQRTPRGRMATVRAWNHFGITPPEMP
>SC1906 ruvC, Holliday junction nuclease
MSIILGIDPGSRITGYGVIRQVGRQLTYLGSGCIRTKVDDLPSRLKLIYA
GVTEIITQFQPDYFAIEQVFMAKNADSALKLGQVRGVAIVAAVNQELPVF
EYAARQVKQTVVGIGSAEKSQVQHMVRTLLKLPANPQADAADALAIAITH
CHVSQNVMQMSESRLNLARGRLR
>SC2077 sbcB, exonuclease I, 3'--> 5' specific; deoxyribophosphodiesterase
MTVKNDSIQSTFLFHDYETFGTHPALDRPAQFAALRTDNDFNVIGEPEVF
YCKPADDYLPQPGAVLITGITPQEAREKGENEAAFARRIHALFTVPKTCV
VGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRP
EGINWPENDDGLPSFRLEHLTQANGIEHSNAHDAMADVYATIAMAQLVKT
RQPRLFDYLYSHRSKHKLAALIDVPQMKPLVHVSGMFGAWRGNTSWVAPL
AWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDHVAVPVK
LVHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKVLRENPQVRDKVVA
IFAEAEPFAASDNVDAQLYDGFFSDADRAAMKIVLETEPRNLPALDITFV
DKRIEKLLFNYRARNFPGTLDDAEQQRWLEHRRQVLTPEFLQQYANELQM
LSQQYAEDKTKLGLLKSLWQYATEIV
>SC0436 sbcC, ATP-dependent dsDNA exonuclease
MKILSLRLKNLNSLKGEWKVDFTAEPFASNGLFAITGPTGAGKTTLLDAI
CLALYHETPRLNTVSQSQNDLMTRDTAECLAEVEFEVKGEAWRAFWSQNR
ARNQPDGNLQSPRVELARCSDGKIFADKVKDKLEMIATLTGLDYGRFTRS
MLLSQGQFAAFLNAKAKERAELLEELTGTEIYGQISAQVFEKHKSARLEL
EKLQAQASGVALLADEQLQQLEASLQALTDEEKRLLADQQGQQQHLHWLT
RKNELHTELHARQQALYAAQEAREKAQPQLAALTLAQPARQLRPHWERIQ
EQTRAVERVRQHSDEVNARLQSAYRLRQRIRACAHRQFTQLNATGQRLKT
WLAEHDGIRVWRSELAGWRALLTQQSHDRAQLSQWQQQLLSDTRQRDALP
PLTLDLTPQALAEARALHTRQRPLRHRLAALQGQILPKQKRQAQLQAAIA
RHHQEQAQYTQRLADKRLSYKTKAQELADVRTICEQEARIKDLESQRAHL
QSGQPCPLCGSTTHPAIAAYQALELSANQTRRDALEKEVKTLAEEGAALR
GQLDALTQQLQRDESEAQSLLQEEQALTEEWQTLCATLGVQLQPQEDLAG
WLTAAEEHEQQLDQLSQRHALQTQIAAHTEQVARFTAQIAQRQASLTADL
AQYTLSLPAPEDEAAWLNERADEAKIWQQRQTEFADLQTQIDRLAPLLET
LPQTDTADSDDDVPLDNWRQAHDECVSLQSQLQTLQEQTTQEQQRAAEAI
AHFDAALKNSPFDSQATFLAALLDEETVTRLEKQQQTLESQLQQAKALSA
QSAQALADHQQQPPAGLDPTCTAEQLAQRLTQLAQQLRENTTRQGEIRQQ
IKQDADNRQRQRALMAEMKQTSQQVEDWGYLNALIGSKEGDKFRKFAQGL
TLDNLVWLANHQLTRLHGRYLLQRKASDALELEVVDTWQADAVRDTRTLS
GGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDAALDALD
ALNASGKTIGVISHVEAMKERIPVQIKVKKINGLGYSKLDKAFAVE
>SC0437 sbcD, ATP-dependent dsDNA exonuclease
MRILHTSDWHLGQNFYSKSRAAEHQAFLDWLLETAQAHQVDAIIVAGDIF
DTGSPPSYARELYNRFVVNLQQTGCHLVVLAGNHDSVATLNESRDILAFL
NTTVIASAGYTPRLLHRRDGSPGAVLCPIPFLRPRDIITSQAGLSGSEKQ
QQLLHAIADYYQQQYQEACLLRGERKLPVIATGHLTTVGASKSDAVRDIY
IGTLDAFPAQHFPPADYIALGHIHRAQCVGGTEHIRYCGSPIALSFDECG
KSKCVHLVTFDQGKWQSTESLAIPVTQPLAVLKGDLASITEQLEQWRGVE
QSPPVWLDIEITTDDYLHDIQRRIQTLTESLPVEVLLVRRSREQRERSLA
NERRETLSELSVEEVFARRLALEALDPPQRERLNQLFSSTLYALNEEHEA
>SC2070 sbmC, DNA gyrase inhibitor
MDYEIRQEQKRKIAGFHMVGPWEHTVKQGFEQLMTWVDRQRIVPVEWIAV
YYDNPDVVPAEKLRCDTVVSVAENFILPDNSEGVIVTAIEGGEYATAVAR
VEDRDFAKPWERFFDVLEQDSAYQIASAPCFETYLNNGMEDGYWDIEMYI
PVQRK
>SC0717 seqA, negative modulator of initiation of replication, inhibits open complex formation, mutation in gene alters cell membrane
MYSAKTSHWIKMKTIEVDDELYSYIASHTKHIGESASDILRRMLKFSATT
QPTASAVKGTPAAQPVAEAKPVNPVKDKVRAMRELLLSDEYAEQKKAVNR
FMLILTTLYSLDHHAFAEATESLHGRTRVYFAADEQTLLKNGNQTKPKHV
PGTPYWVITNTNTGRKCSMIEHIMQSMQFPAELIEKVCGTI
>SC3341 smf, putative protein involved in DNA uptake
MARTEIWLRLMYVGDLYGEAMLNMANSLIRQPQINRTHLQEAGLTARQAE
RFLQLPAGVLDETLRWLELPQHHFLCADSEIYPPQLRAIDDYPGAIFIDG
DPACLHTCQLAVVGSRSHSWYGERWGRLLCESLAKSGLTITSGLARGIDG
VAHNAAVSMGGKSVAVLGNGLAKIYPRRHAMLAENLIAAGGAVVSEFPLS
TPPLPQNFPRRNRIISGLSKGVLVIEAALRSGSLVTARCALEQGRDVFAL
PGPIGSPGSEGTHWLIKQGATLVTTPEDILENLQYGLHWLPTTAENSLYS
LNQDEAALPFPELLANVGDEVTPVDVVAERAGQPVPAVVAQLLELELAGW
IAAVPGGYVRLRRASHVRRTNVFV
>SC2648 srmB, ATP-dependent RNA helicase
MTVTTFSELELDESLLDALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPT
GTGKTAAYLLPALQHLLDFPRKKSGPPRILILTPTRELAMQVADHARELA
KHTHLDIATITGGVAYMNHAEVFSENQDIVVATTGRLLQYIKEENFDCRA
VETLILDEADRMLDMGFAQDIEHIAGETRWRKQTMLFSATLEGDAIKDFA
ERLLEDPVEVSANPSTRERKKIHQWYYRADNFEHKVALLKHLLKQDDATR
SIVFVRKRERVHELAETLRLAGINNCYLEGEMAQIKRNEGIKRLTDGRVN
VLVATDVAARGIDIPDVSHVINFDMPRSGDTYLHRIGRTGRAGRKGTAIS
LVEAHDHLLLLKIGRYIEEPLKARVIDELRPTTRAPSEKLTGKPSKKVLA
KRAEKKKEKEKEKPRVKKRHRDTKNIGKRRKPSGTKMQEQSSEE
>SC4134 ssb, ssDNA-binding protein controls activity of RecBCD nuclease
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANLTLATSESWRDKQTGEMK
EQTEWHRVVMFGKLAEVAGEYLRKGSQVYIEGQLRTRKWTDQSGQERYTT
EINVPQIGGVMQMLGGRQGGGAPAGGQQQGGWGQPQQPQQPQGGNQFSGG
AQSRPQQSAPAPSNEPPMDFDDDIPF
>SC0332 ssb, ssDNA-binding protein controls activity of RecBCD nuclease
MASRGVNKVIILGRVGQDPEVRYSPSGTAFANLTVATSEQWRDKQTGEQK
EQTEWHRIAVVGKLAEVVGQYVKKGDQVYFEGMLKTRKWQDQSGQDRYTT
EVHVGINGVMQMLGGTGESKQQAASRQTQKPQQQSAPAQHNEQPMNFDDD
IPFAPVTLPFPRHAIHAI
>SC3574 tag, 3-methyl-adenine DNA glycosylase I, constitutive
MQRCDWVSQAPLYIAYHDNEWGVPETDSRKLFEMICLEGQQAGLSWITVL
KKRENYRACFHQFDPVRIAAMQEEDVERLLQNTGIIRHRGKIQAIISNAR
AWLAMEQNGESFADFVWSFVDGQPQITQAASLDEIPTSTPASDALAKALK
KRGFKFVGTTICYSFMQACGLVNDHITGCFCHPGEKHDSQIPE
>SC1214 terS, Gifsy-1 prophage DNA packaging protein
MNVNKKKLAEIFGCDVRTVTAWQSQGLPLVSGGGKGNEAVFDTAAAISWY
AERDASIENEKLRKEVDDLRAAAESELNPGTIDYERYRLTKAQADAQELK
NAEREGLVLETELFTYILQRVAQEIAGILSRIPLVLQRKYPDLCQSHIDV
VRTEIARASGRAATIADVEKWTDDFRRAQGE
>SC3589 tnp, transposase of Tn10
MCELDILHDSLYQFCPELHLKRLNSLTLACHALLDCKTLTLTELGRNLPT
KARTKHNIKRIDRLLGNRHLHKERLAVYRWHASFICSGNTMPIVLVDWSD
IREQKRLMVLRASVALHGRSVTLYEKAFPLSEQCSKKAHDQFLADLASIL
PSNTTPLIVSDAGFKVPWYKSVEKLGWYWLSRVRGKVQYADLGAENWKPI
SNLHDMSSSHSKTLGYKRLTKSNPISCQILLYKSRSKGRKNQRSTRTHCH
HPSPKIYSASAKEPWVLATNLPVEIRTPKQLVNIYSKRMQIEETFRDLKS
PAYGLGLRHSRTSSSERFDIMLLIALMLQLTCWLAGVHAQKQGWDKHFQA
NTVRNRNVLSTVRLGMEVLRHSGYTITREDLLVAATLLAQNLFTHGYALG
KL
>SC1859 tnp, putative transposase
MDAFAKARDDKYPQISKSWRAHWENLNTLFSYPPDIRKAIYTTNAI
>SC3676 tnpA, Transposase
MRKVRLTEHQNIAVIKLVEAGRAVKNICQEADISEVTDYIYGHWVSPHPV
SH
>SC2224 tnpR, transposase of Tn10
MCELDILHDSLYQFCPELHLKRLNSLTLACHALLDCKTLTLTELGRNLPT
KARTKHNIKRIDRLLGNRHLHKERLAVYRWHASFICSGNTMPIVLVDWSD
IREQKRLMVLRASVALHGRSVTLYEKAFPLSEQCSKKAHDQFLADLASIL
PSNTTPLIVSDAGFKVPWYKSVEKLGWYWLSRVRGKVQYADLGAENWKPI
SNLHDMSSSHSKTLGYKRLTKSNPISCQILLYKSRSKGRKNQRSTRTHCH
HPSPKIYSASAKEPWVLATNLPVEIRTPKQLVNIYSKRMQIEETFRDLKS
PAYGLGLRHSRTSSSERFDIMLLIALMLQLTCWLAGVHAQKQGWDKHFQA
NTVRNRNVLSTVRLGMEVLRHSGYTITREDLLVAATLLAQNLFTHGYALG
KL
>SC1191 tnpR, transposase of Tn10
MCELDILHDSLYQFCPELHLKRLNSLTLACHALLDCKTLTLTELGRNLPT
KARTKHNIKRIDRLLGNRHLHKERLAVYRWHASFICSGNTMPIVLVDWSD
IREQKRLMVLRASVALHGRSVTLYEKAFPLSEQCSKKAHDQFLADLASIL
PSNTTPLIVSDAGFKVPWYKSVEKLGWYWLSRVRGKVQYADLGAENWKPI
SNLHDMSSSHSKTLGYKRLTKSNPISCQILLYKSRSKGRKNQRSTRTHCH
HPSPKIYSASAKEPWVLATNLPVEIRTPKQLVNIYSKRMQIEETFRDLKS
PAYGLGLRHSRTSSSERFDIMLLIALMLQLTCWLAGVHAQKQGWDKHFQA
NTVRNRNVLSTVRLGMEVLRHSGYTITREDLLVAATLLAQNLFTHGYALG
KL
>SC1711 topA, DNA topoisomerase type I, omega protein
MGKALVIVESPAKAKTINKYLGNDYVVKSSVGHIRDLPTSGSAAKKSADS
TSTKTAKKPKKDERGALVNRMGVDPWHNWDAHYEVLPGKEKVVSELKQLA
EKADHIYLATDLDREGEAIAWHLREVIGGDDARYSRVVFNEITKNAIRQA
FEQPGELNINRVNAQQARRFMDRVVGYMVSPLLWKKIARGLSAGRVQSVA
VRLVVEREREIKAFVPEEFWEIDANTTTPSGEALPLQVTHQNDKPFRPVN
REQTLAAVSLLEKARYSVLEREDKPTSSKPGAPFITSTLQQAASTRLGFG
VKKTMMMAQRLYEAGYITYMRTDSTNLSQDAVNMVRGYIGDNFGKKYLPD
NPNQYASKENSQEAHEAIRPSDVAVMAESLKDMEADAQKLYQLIWRQFVA
CQMTPAQYDSTTLTVGAGEFRLKARGRILRFDGWTKVMPALRKGDEDRTL
PAVNKGDALTLLELTPAQHFTKPPARFSEASLVKELEKRGIGRPSTYASI
ISTIQDRGYVRVENRRFYAEKMGEIVTDRLEENFRELMNYDFTAQMEDSL
DQVANHQAEWKAVLDNFFSDFTQLLDKAEKDPEEGGMRPNQMVLTSIDCP
TCGRKMGIRTASTGVFLGCSGYALSPKERCKTTINLVPENEVLNVLEGDD
AETNALRAKRRCQKCGTAMDSYLIDPKRKLHVCGNNPTCDGYEIEEGEFR
IKGYDGPIVECEKCGSEMHLKMGRFGKYMACTNDECKNTRKILRNGEVAP
PKEDPVPLPELPCEKSDAYFVLRDGAAGIFLAANTFPKSRETRAPLVEEL
YRFRDRLPEKLRYLADAPQQDPEGNKTVVRFSRKTKQQYVAAEKDGKATG
WSAFFVDGKWVEGKK
>SC1320 topB, DNA topoisomerase III
MANWSRPAAVALWLRFVNLMRLFIAEKPSLGRAIADVLPKPHRKGDGFIE
CGNGQVVTWCIGHLLEQAQPDAYDSRYARWNLADLPIVPEKWQLQPRPSV
TKQLNVIKRFLHQAGEIIHAGDPDREGQLLVDEVLDYLQLPAEKRQQVRR
CLINDLNPQAVERAIDRLRANSDFVPLCVSALARARADWLYGINMTRAYT
ILGRNAGYQGVLSVGRVQTPVLGLVVRRDEEIENFVAKDFFEVKAHIVTP
ADERFTAIWQPSEACEPYQDEEGRLLHRPLAEHVVNRINGQPALVTSYND
KRESESAPLPFSLSTLQIEAAKRFGLSAQNVLDICQKLYETHKLITYPRS
DCRYLPEEHFAGRQAVMNAISVHAPDLLPQPVVNPDTRNRCWDDKKVDAH
HAIIPTARSSSVHLTENEAKVYTLIARQYLMQFCPDAVFRKCVIELEIAK
GKFVAKARFLAEAGWRTLLGSKERDEENDGTPLPVVAKGDELLCEKGEVV
ERQTQPPRHFTDATLLSAMTGIARFVQDKDLKKILRATDGLGTEATRAGI
IELLFKRSFLTKKGRYIHSTDAGKALIHSLPEMAARPDMTAHWESVLTQI
SEKQCRYQDFMQPLVGTLYQLIEQAKRTPVKRFRGIVAPGGGDKKKSAPR
KRAGKKSPPAKETGRQTE
>SC2000 umuC, error-prone repair: component of DNA polymerase V with UmuD'
MFALCDVNSFYASCETVFRPDLCGRPVVVLSNNDGCVIACSAEAKQLGIA
PGEPYFKQKERFRRSGVVCFSSNYELYADMSNRVMTTLEEMVPRVEIYSI
DEAFCDLTGVRNCLDLTDFGREIRATVLKRTHLTVGVGIAQTKTLAKLAN
HAAKKWQRQTDGVVDLSNIDRQRRLLALIPVEDVWGVGRRISKKLNALGI
KTALDLSEQSTWIIRKHFNVVLERTVRELCGEPCLELEEFAPAKQEIVCS
RSFGERVTDYEEMRQAVYSYAARAAEKLRGEHQYCRFISTFVKTSPFALN
EPYYGNSAAVTLLTPTQDSRDIINAAVKCLDKIWRDGHRYQKAGVMLGDF
FSQGVAQLNLFDDNAPRAGSAKLMEVLDHLNAKDGKGTLYFAGQGMSQQW
AMKREMLSPRYTTRYSDLLRVK
>SC2652 ung, uracil-DNA-glycosylase
MATELTWHDVLADEKQQPYFINTLHTVAGERQSGITVYPPQKDVFNAFRF
TELGDVKVVILGQDPYHGPGQAHGLAFSVRPGIAPPPSLVNMYKELEASI
PGFVRPAHGYLESWARQGVLLLNTVLTVRAGQAHSHASLGWETFTDKVIS
LINQHREGVVFLLWGSHAQKKGAIIDPQRHHILKAPHPSPLSAHRGFFGC
NHFALTNQWLEQHGEKTIDWTPVLPAESE
>SC4133 uvrA, UvrA with UvrBC is a DNA excision repalr enzyme
MDKIEVRGARTHNLKNINLVIPRDKLIVVTGLSGSGKSSLAFDTLYAEGQ
RRYVESLSAYARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGT
ITEIHDYLRLLFARVGEPRCPDHDVPLAAQTVSQMVDNVLSQPEGKRLML
LAPIIKERKGEHTKTLENLASQGYIRARIDGEVCDLSDPPKLELQKKHTI
EVVIDRFKVRNDLSQRLAESFETALELSGGTAVVADMDDEKAEELLFSAN
FACPICGYSMRELEPRLFSFNNPAGACPTCDGLGVQQYFDPDRVIQNPDL
SLAGGAIRGWDRRNFYYFQMLKSLAEHYKFDVDAPWASLSANVHKVVLYG
SGKENIEFKYMNDRGDTSVRRHPFEGVLHNMERRYKETESSAVREELAKF
ISNRPCASCEGTRLNREARHVFVENTPLPAISDMSIGHAMDFFTNLKLSG
QRAKIAEKVLKEIGDRLKFLVNVGLNYLTLSRSAETLSGGEAQRIRLASQ
IGAGLVGVMYVLDEPSIGLHQRDNERLLGTLIHLRNLGNTVIVVEHDEDA
IRAADHVIDIGPGAGVHGGEVVAEGPLEAIMAVPESLTGQYMSGKRKIEV
PKQRVPANPEKVLKLTGARGNNLKDVTLTLPVGLFTCITGVSGSGKSTLI
NDTLFPIAQRQLNGATIAEPAPYRDIQGLEHFDKVIDIDQSPIGRTPRSN
PATYTGVFTPVRELFAGVPESRSRGYTPGRFSFNVRGGRCEACQGDGVIK
VEMHFLPDIYVPCDQCKGKRYNRETLEIKYKGKTIHEVLDMTIEEAREFF
DAVPALARKLQTLMDVGLTYIRLGQSATTLSGGEAQRVKLARELSKRGTG
QTLYILDEPTTGLHFADIQQLLDVLHQLRDQGNTIVVIEHNLDVIKTADW
IVDLGPEGGSGGGEILVSGTPETVAECEASHTARFLKPMLK
>SC0796 uvrB, UvrB with UvrAC is a DNA excision repair enzyme
MSKPFKLNSAFKPSGDQPDAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIA
NVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEA
YVPSSDTFIEKDASVNEHIEQMRLSATKALLERRDVVVVASVSAIYGLGD
PDLYLKMMLHLTVGMLIDQRAILRRLAELQYTRNDQAFQRGTFRVRGEVI
DIFPAESDDIALRVELFDEEVERLSLFDPLTGQVESTVPRYTIYPKTHYV
TPRERILQAMEEIKDELADRRKVLLANNKLLEEQRLSQRTQFDLEMMNEL
GYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGM
YRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYE
LEKSGDEVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVL
VTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVL
VGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKA
ILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALG
QNIAKTKAKGKGKGRSTAKAGIVELDMTPKALQQKIHELEGQMMQHAQNL
EFEEAAQIRDQLHQLRELFIAAS
>SC1949 uvrC, UvrC with UvrAB is a DNA excision repair enzyme
MSEIFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSN
LASRKTEALVAQIQHIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDK
SYPFIFLSGDTHPRLAMHRGAKHAKGEYFGPFPNGYAVRETLALLQKIFP
IRQCENSVYRNRSRPCLQYQIGRCLGPCVAGLVSEEEYAQQVEYVRLFLS
GKDDQVLTQLIARMEKASQDLAFEEAARIRDQIQAVRRVTERQFVSNAGD
DLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELGEVVETFV
GQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRRIHVQTKPRGD
RARYLKLARTNAATALITKLSQQSTITQRLTALAAVLKLPAIKRMECFDI
SHTMGEQTVASCVVFDANGPLRAEYRRYNIAGITPGDDYAAMNQVLRRRY
GKAIEESKIPDVILIDGGKGQLAQAKAVFAELDVPWDKHRPLLLGVAKGA
DRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGHRKKRA
KVKNTSTLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGL
AEKIFWSLKH
>SC3850 uvrD, DNA-dependent ATPase I and helicase II
MDVSYLLDSLNDKQREAVAAPRSNMLVLAGAGSGKTRVLVHRIAWLLSVE
NNSPYSIMAVTFTNKAAAEMRHRIGQLMGTSQGGMWVGTFHGLAHRLLRA
HHMDANLPQDFQILDSEDQMRLLKRLIKAMNLDEKQWPPRQAMWYINSQK
DEGLRPHHIQSYGNPVEQTWQKVYQAYQEACDRAGLVDFAELLLRAHELW
LNKPHILQHYRERFTNILVDEFQDTNNIQYAWVRLLAGDTGKVMIVGDDD
QSIYGWRGAQVENIQRFLNDFPGAQTIRLEQNYRSTSNILSAANALIENN
NGRLGKKLWTDGVDGEPISLYCAFNELDEARFVVNRIKTWQDNGGALAQC
AILYRSNAQSRVLEEALLQASMPYRIYGGMRFFERQEIKDALSYLRLIAN
RNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQACRELLQEKAL
AGRAASALQRFMELIDALAQETADMPLHVQTDRVIKDSGLRTMYEQEKGE
KGQTRIENLEELVTATRQFSYNDEDEDLMPLQAFLSHAALEAGEGQADTW
QDAVQLMTLHSAKGLEFPQVFIVGMEEGMFPSQMSLDEGGRLEEERRLAY
VGVTRAMQKLTLTYAETRRLYGKEVYHRPSRFIGELPEECVEEVRLRATV
SRPVSHQRMGTPLAENDTGYKLGQRVRHAKFGEGTIVNLEGSGEHSRLQV
AFQGQGIKWLVAAYAKLETV
>SC1994 vsr, DNA mismatch endonuclease, patch repair protein
MADVHDKATRSKNMRAIATRDTAIEKRLAGLLSAQGITFHTQDATLPGKP
DFVVNDYDCVIFTHGCFWHHHHCYLFKVPATRTAFWLEKIGKNVERDERD
IQRLQALGWRVLIVWECALRGRAKLSDAALAERLEEWICGGGASAQIDTQ
GIHLLA
>SC2108 wcaI, putative glycosyl transferase in colanic acid biosynthesis
MFLRQEDFAAVVRATPLISLDFIVENGQGEILLGQRLNRPAQGYWFVPGG
RVCKDETLEVAFARLTQAELGVRLPLAAGTFYGVWQHFYDDNFSGEDFST
HYIVLGFRLRVAESDLRLPDAQHGSYRWLTPEQLLASDNVHENSRAYFLP
DAPAVGL
>SC3848 xerC, putative integrase/recombinase, site-specific
MTDVALSQDVSRFLRYLGVERQLSPITLLNYQRQLDAIIALAGEAGLKSW
QQCDAAIVRSFAVRSRRKGLGPASLALRLSALRSFFDWLVSQGELKANPA
KGVSAPKAPRHLPKNIDVDDVNRLLDIDLNDPLAVRDRAMLEVMYGAGLR
LSELVGLDIKHLDLDTGEVWVMGKGSKERRLPIGRNAVTWIEHWLDLRGL
FASDEEALFLSKLGKRISARNVQKRFAEWGIKQGLNSHVHPHKLRHSFAT
HMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKRGK
>SC2984 xerD, recombinase, site-specific
MEQDLARIEQFLDALWLERNLAENTLSAYRRDLSMVVAWLHHRGKTLATA
QADDLQTLLAERVEGGYKATSSARLLSAMRRFFQHLYREKYREDDPSAQL
ASPKLPQRLPKDLSEAQVERLLQAPLIDQPLELRDKAMLEVLYATGLRVS
ELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVYWLETYLEHGRPWL
LNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAF
ATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA
>SC2510 xseA, exonuclease VII, large subunit
MGQVWISGEISNFTQPASGHWYFTLKDDTAQVRCAMFRNSNRRVTFRPQH
GQQVLVRANITLYEPRGDYQIIAESMQPAGEGLLQQKYEQLKAKLQAEGL
FDQQHKQPLPSPAHCVGVITSKTGAALHDILHVLKRRDPSLPVIIYPTAV
QGDDAPGQIVRAIELANARGECDVLIVGRGGGSLEDLWSFNDERVARAIF
ASRIPVVSAVGHETDVTIADFVADLRAPTPSAAAEIVSRNQQELLRQIQS
AQQRLGMAMDYYLANRSRRFTQIFHRLQQQHPQLRLARQQTALERLRQRM
GFALEARIKQANQRQQRVSQRLSQQNPQPRIHRAQSRIQQLEYRLTENIR
SRLSEQRERFGNAVTHLEAVSPLATLARGYTVSTTTDGKVLKKIKQVKAG
DIMTTRLEDGWLESEVKSVTPGT
>SC0465 xseB, exonuclease VII, small subunit
MPKKNEAPASFETALSELEHIVTRLESGDLPLEDALNEFERGVQLARQGQ
AKLQQAEQRVQILLSDNEEASPEPFIADNE
>SC1324 xthA, exonuclease III, may repair singlet oxygen induced lesions
MKFVSFNINGLRARPHQLEAIVEKRQPDVIGLQETKVHDEMFPLEEVAKL
GYNVFYHGQKGHYGVALLTKATPISVRRGFPDDGEEAQRRIIMAEIPSPL
GNITVINGYFPQGESRDHPLKFPAKAQFYQNLQNYLETELKCNNPVLIMG
DMNISPTDLDIGIGEENRKRWLRTGKCSFLPEEREWMSRLLKWGLVDTFR
QANPQTMDKFSWFDYRSKGFVDNRGLRIDLLLASAPLAERCAETGIDYDI
RSMEKPSDHAPVWATFRV
>SC0495 ybaV, putative DNA uptake protein and related DNA-binding proteins
MKHGIKALLITLSLTCAGMAHSALAATPVAKNAAVETKADTPSSSSAKAA
LPAKASDDEGTRVSINTASAEDLARVMNGVGLKKAQAIVSYREEYGPFKT
VDDLKQVPGMGSALVERNLAVLTL
>SC0509 ybaZ, putative methyltransferase
MLVSCASGLSSPLIPDYPEALTQDSIMDIQDTFPQRVWQIVASIPEGFVT
TYGDVARLAGSPRAARQVGGVLKRLPEGSTLPWHRVVNRHGAISLTGPDL
QRQRQALLAEGVVVSGSGQIDLQRYRWVY
>SC0894 ybjD, RecF protein-like protein
MILERVEIVGFRGINRLSLMLEQNNVLIGENAWGKSSLLDALTLLLSPEL
DLYHFVREDFWFPPGDIKGREHHLHIILTFRETQPGRHRVRRYRALEACW
SPCEDDFHRIFYRLEGECGADGSVMTLRSFLNSDGQPLPVENINDQVRHL
VRLMPVLRLRDARFMRRIRNGTVPNVPDVEVTARQLDFLARELATRPQNL
TDGQIRQGLSAMVQLLEHYFSEQGAGQARHRLMRRRSQNEQRSWRYLDII
NRMIDKPGSRSHRVILLGLFSTLLQAKGTLRLHKDARPLLLVEDPETRLH
PIMLSVAWQLLNLLPLQRIATTNSGELLSLTPVEHVVRLVRESSRVAAWR
LGPGGLSAEDGRRIAFHIRFNRASSLFARCWLLVEGETETWVINELARQC
GHHFDAEGIKVIEFAQSGLKPLVKFARRMGIEWHVLVDGDEAGKKYAATV
RSLLNNDREEEREHLTALPALDMEHFMYRQGFADVFHRVAQLPPNVPMNT
RKIITKAIHRSSKPDLAIEVAMEAGRRGIDAVPPLFRKMFSRVVWLARGR
AD
>SC0916 ycaJ, paral putative polynucleotide enzyme
MSNLSLDFSDNTFQPLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGHL
HSMILWGPPGTGKTTLAEVIARYASADVERISAVTSGVKEIREAIERARQ
NRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPSFELN
SALLSRARVYLLKSLTTDDIEQVLDQAMQDKTRGYGDQDIVLPNETRRAI
AELVNGDARRALNTLEMMADMAEADDSGKRVLLPALLTEIAGERSARFDN
KGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIAS
EDVGNADPRAMQVAIAAWDCFTRVGPAEGERAIAQAIVYLACAPKSNAVY
TAFKAALADARERPDYDVPVHLRNAPTKLMKEMGYGQEYRYAHDEPNAYA
AGEVYFPPEIAQTRYYHPTNRGLEGKIGEKLAWLAEQDQNSPTKRYR
>SC1152 ycfH, putative metal-dependent hydrolase
MFLVDSHCHLDGLDYQSLHKDVDDVLAKAAARDVKFCLAVATTLPGYRHM
RELVGKRDNVVFSCGVHPLNQDEAYDVEELRLLAAEDDVVAMGETGLDYF
YTPETKIRQQASFIHHIQIGRELHKPVIVHTRDARADTLAILREEKVTDC
GGVLHCFTEDRETAGKLLDLGFYISFSGIVTFRNAEQLRDAARYVPLDRL
LVETDSPYLAPVPHRGKENQPAMVRDVAEYMAVLKGVAVEELAQITTDNF
ARLFHIDASRLSSIR
>SC1819 yeaB, putative NTP pyrophosphohydrolase
MDTSRLTLDHFLSRFQLLRPQMTHETLNQRQAAVLIPVVRRPQPGLLLTQ
RAIHLRKHAGQVAFPGGAVDSTDASLIAAALREAQEEVAIPPQAVEVIGV
LPPVDSVTGFQVTPVVGIIPPNLPWRASEDEVSAVFEMPLAQALQLGRYH
PLDVYRRGNSHRVWLSWYEHYFVWGMTANILRELALQIGVKP
>SC1878 yebY, putative periplasmic or exported protein
MKKILLPALLLATSGVALAAPQVITVSRFEVGKDKWAFNREEVMLTCRPG
QALYVINPSTLVQYPLNAIAEQQVAEGKTRAQPIAVIQIDNPAKPGEKMS
LAPFIERAQKLCDPSNS
>SC2240 yejH, putative ATP-dependent helicase
MIFTLRPYQQEAVDATLSHFRRHRTPAVIVLPTGAGKSLVIAELARVARG
RVLVLAHVKELVAQNHAKYCALGLEADIFAAGLKRKESQGKVVFGSVQSV
ARNLDAFQEEFSLLIVDECHRIGDDEDSQYQQILTHLSKVNPHLRLLGLT
ATPFRLGKGWIYQFHYHGMVRGNDNALFRDCIYELPLRYMIKHGYLTPPE
RLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHIISQIMEFAQ
TRKGVMIFAATVEHAKEIVGLLPADDAALITGDTPGPERDALIDNFKAQR
FRYLVNVSVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTD
CLILDYAGNPHNLYAPEVGSPKGKSDNVPVQVFCPACGFANTFWGKTTAD
GTLIEHFGRRCQGWFEDDDGHREQCDFRFRFKNCPQCNAENDIAARRCRE
CDAILVDPDDMLKAALRLKDALVLRCSGMTMQHGQDEKGEWLKITYYDED
GADVSERFRLHTPAQRTAFEQLFIRPHTRTPGVPLRWITAADIVAQQALL
RHPDFVVARMKGQYWQVREKVFDYEGRFRRAHELRG
>SC2297 yfaO, putative NTP pyrophosphohydrolases including oxidative damage repair enzymes
MRQRTIVCPLIQNDGCYLLCKMADNRGVFPGQWALSGGGVEPGERIEEAL
RREIREELGEQLILSDITPWTFRDDIRVKTYADGRQEEIYMIYLIFDCIS
ANRDICINDEFQDYAWVKPEELALYDLNVATRHTLALKGLL
>SC2347 yfcD, putative NTP pyrophosphohydrolase
MVEQRRLASTEWVDIVNEDNEVIAQSSREQMRAQRLRHRATYIVVHDGMG
KILVQRRTETKDFLPGMLDATAGGVVQADEQLLESARREAEEELGIAGVP
FAEHGLFYFEDQHCRVWGALFSCVSHGPFALQEDEVSEVCWLTPEEITAR
CDEFTPDSLKALALWMTRNAKNEAALQEKPEETE
>SC2473 yffH, putative pyrophosphohydrolase
MSQTITLIKDKILSDNYFTLRNITYDLTRRNGEVIRHKREVYDRGNGATI
LLYNSTKKTVLLVRQFRVATWVNGNQDGMLIETCAGLLDNDEPEVCIRKE
AIEETGYDVGEVRKIFELYMSPGGVTELIHFFIAEYHDSERASIGGGVED
EEIEVLELPFSRALEMVRSGEIRDGKTVLLLNYLQTSHLMD
>SC2493 yfgE, putative ATPase involved in DNA replication initiation
MSSWVEVSLNTPAQLSLPLYLPDDETFASFWPGDNASLLAALQNVLRQEH
SGYIYLWAREGAGRSHLLHAACAELSQRGDAVGYVPLDKRTWFVPEVLDG
MEHLSLVCIDNIECVAGDELWEMAIFDLYNRILESGKTRLLITGDRPPRQ
LNLGLPDLASRLDWGQIYKLQPLSDEDKLQALQLRARLRGFELPEDVGRF
LLKRLDREMRTLFMTLDQLDHASITAQRKLTIPFVKEILKL
>SC2870 ygbT, putative cytoplasmic protein
MTFVPLNPIPLKDRTSMIFLQYGQIDVLDGAFVLIDKTGVRTHIPVGSVA
CIMLEPGTRVSHAAVHLASTVGTLLVWVGEAGVRVYSSGQPGGARADKLL
YQAKLALDDDLRLKVVRKMYELRFREPPPARRSVEQLRGIEGSRVRATYA
LLAKQYGVKWHGRNYDPKDWEKGDVVNRCISAATSCLYGISEAAILAAGY
APAIGFIHSGKPLSFVYDIADIIKFESVVPKAFEIAARHPAEPDKEVRLA
CRDIFRSSKLTGKLIPLIEEVLAAGEIEPPQPAPDMLPPAIPEPESLGDS
GHRGHG
>SC2943 ygdP, putative invasion protein; NTP pyrophosphohydrolase
MIDDDGYRPNVGIVICNRQGQVMWARRFGQHSWQFPQGGINPGESAEQAM
YRELFEEVGLSRKDVRILASTRNWLRYKLPKRLVRWDTKPVCIGQKQKWF
LLQLMSADAEINMQTSSTPEFDGWRWVSYWYPVRQVVSFKRDVYRRVMKE
FASVVMALQDNPPKLQSAPAYRRKRG
>SC3212 yhbQ, putative cytoplasmic protein
MSIFILAYTGNLKIIMLMATMTPWYLYLIRTADNALYTGITTDVARRYRQ
HQTGKGAKALRGKGELTLAFAAQVGDRSLALRIEYRIKQLTKRQKERLVT
EREAFEALLSSLQTPVLKND
>SC3324 yhdJ, putative methyltransferase
MVMKAECEPHYFGDESKKIIHGDALTELKKLPSESIDLIFADPPYNIGKD
FDGMVESWDEASFLAWLYECIDECHRVLKKHGTMYIMNSTENMPYIDLKC
RTLFTIKSRIVWSYDSSGVQAKKYFGSMYEPILMMVKNPKSYTFNRDAIL
VETTTGAKRALIDYRKNPPQPYNQKKVPGNVWSFPRVRYLMDEYENHPTQ
KPSALLKRIILASSNPSDTVLDPFAGSFTTGAVAAESGRKFIGIELNNEY
VKMGLRRLSVTSHYSENELAKVKKRKTQNLSKKQRNVGINALSSEK
>SC3501 yhhF, putative methyltransferase
MKKPTHSGSGQIRIIGGQWRGRKLPVPDSPGLRPTTDRVRETLFNWLAPV
MVDAHCLDCFAGSGALGLEALSRYAAQATLLEMDRAVSQQLQKNLATLKA
NNARVVNTNTLTFLSQPGTPHHVVFVDPPFRKGLLEETLQLLETQGWLAD
DALIYVESEVENGLPPVPANWALYREKVAGQVAYRLYQRDAQGENDVD
>SC3503 yhhM, putative inner membrane protein
MSKPPLFFIIIIALIVVAASFRFVQQRREKAANEAAPLQQKLVVVSNKRE
KPVNDRRSRQQEVSPAGTSMRYEASFKPLNGGLEKTFRLQAQQYHALTVG
DQGTLSYKGTRFVGFVSRTPDNE
>SC3613 yibL, putative cytoplasmic protein
MKEVEKNEIKRLSDRLDAIRHQQAGLSLVESADKYAELEKEKETLEAEII
RLREVHSQKLSKEAQKLMNLPFRRAITKKEQADMGKLKKSVRGLIVVHPM
TALGREMGLKEMTGFAKSEF
>SC3662 yicF, putative DNA ligase
MYDQLSARLVQWQRCVGQDVSSTPVSPPLNGTTMHPVAHTGVRKLADRQA
VEQWMRGRSELWVQPKVDGVAVTLVYQNGKLTRAISRGNGLQGEDWTPKI
RLIPSIPQTTQGALANAVLQGEIFLQREGHIQQRMGGMNARSKVAGMLMR
QDNASALNSLGIFIWAWPDGPANMPERLSQLAKAGFSLTNKYTLAVKDAS
EVERARQSWLTSALPFVTDGVVIRMAKEPASQHWRPGQGDWLAAWKYPPV
AQVAQVSAIQFSVGKSGKITVVASLVPVILDDKRVQRVNIGSVKRWEAWD
IAPGDQILVSLAGQGIPRLDEVVWRSRERSKPVPPDSHFNSLTCFYASAT
CQEQFISRLVWLGSRSALGLDGMGEASWRALHQTHRFEHIFSWLALTSAQ
IANTPGFAKGKSEQIWRQFNLARRQPFTRWIMAMDIPLTQAALQASGDRS
WEQLLMRTEQHWRQLPATGERRAGRVIDWRDNPQIKTLSRWLAAQHIPGF
GS
>SC3874 yigW, putative hydrolase of PHP superfamily
MFDIGVNLTSSQFAKDRDDVVARAFAAGVKGMLLTGTNIHESQQALKLAR
RYPHCWSTAGVHPHDSSQWSPASEDAIIALANQPEVVAIGECGLDFNRNF
STPQEQERAFQAHLQIAAELQMPIFMHCRDAHERFLALLDPWLDSLPGAI
LHCFTGSRQQMQACVDRGLYIGITGWVCDERRGLELRELLPFIPAEKLLI
ETDAPYLLPRDLTPKPTSRRNEPAYLPHILERIALWRGEDPQWLAAMTDA
NARTLFEVVF
>SC0938 yis, putative integrase protein
MQADKTLNIGRDRLFNLLGEYRLLVPVKRAYHKTTNSHHRFYRHPNLLKP
GPEQVTALEPEQVWVADITYLPLRSGTAYLSLVTDACSRKIVGYHVGENL
QTENVVKAFRQALRRRKTTGPLVHHSDRGLQYCSVLYQSVHERNGITCSM
TDGYDCYQNALAERINGILKNEFLLSRPADLEQAREIVKESVAIYNHERP
HQALKYKTPDDVHQAFYRQKTVNLYQD
>SC3987 yis2, putative integrase protein
MQADKTLNIGRDRLFNLLGEYRLLVPVKRAYHKTTNSHHRFYRHPNLLKP
GPEQVTALEPEQVWVADITYLPLRSGTAYLSLVTDACSRKIVGYHVGENL
QTENVVKAFRQALRRRKTTGPLVHHSDRGLQYCSVLYQSVHERNGITCSM
TDGYDCYQNALAERINGILKNEFLLSRPADLEQAREIVKESVAIYNHERP
HQALKYKTPDDVHQAFYRQKTVNLYQD
>SC4374 yis2, putative integrase protein
MQADKTLNIGRDRLFNLLGEYRLLVPVKRAYHKTTNSHHRFYRHPNLLKP
GPEQVTALEPEQVWVADITYLPLRSGTAYLSLVTDACSRKIVGYHVGENL
QTENVVKAFRQALRRRKTTGPLVHHSDRGLQYCSVLYQSVHERNGITCSM
TDGYDCYQNALAERINGILKNEFLLSRPADLEQAREIVKESVAIYNHERP
HQALKYKTPDDVHQAFYRQKTVNLYQD
>SC1147 yis2, putative integrase protein
MQADKTLNIGRDRLFNLLGEYRLLVPVKRAYHKTTNSHHRFYRHPNLLKP
GPEQVTALEPEQVWVADITYLPLRSGTAYLSLVTDACSRKIVGYHVGENL
QTENVVKAFRQALRRRKTTGPLVHHSDRGLQYCSVLYQSVHERNGITCSM
TDGYDCYQNALAERINGILKNEFLLSRPADLEQAREIVKESVAIYNHERP
HQALKYKTPDDVHQAFYRQKTVNLYQD
>SC3140 yis2, putative integrase protein
MQADKTLNIGRDRLFNLLGEYRLLVPVKRAYHKTTNSHHRFYRHPNLLKP
GPEQVTALEPEQVWVADITYLPLRSGTAYLSLVTDACSRKIVGYHVGENL
QTENVVKAFRQALRRRKTTGPLVHHSDRGLQYCSVLYQSVHERNGITCSM
TDGYDCYQNALAERINGILKNEFLLSRPADLEQAREIVKESVAIYNHERP
HQALKYKTPDDVHQAFYRQKTVNLYQD
>SC3584 yis2, putative integrase protein
MQADKTLNIGRDRLFNLLGEYRLLVPVKRAYHKTTNSHHRFYRHPNLLKP
GPEQVTALEPEQVWVADITYLPLRSGTAYLSLVTDACSRKIVGYHVGENL
QTENVVKAFRQALRRRKTTGPLVHHSDRGLQYCSVLYQSVHERNGITCSM
TDGYDCYQNALAERINGILKNEFLLSRPADLEQAREIVKESVAIYNHERP
HQALKYKTPDDVHQAFYRQKTVNLYQD
>SC2403 yis2, putative integrase protein
MQADKTLNIGRDRLFNLLGEYRLLVPVKRAYHKTTNSHHRFYRHPNLLKP
GPEQVTALEPEQVWVADITYLPLRSGTAYLSLVTDACSRKIVGYHVGENL
QTENVVKAFRQALRRRKTTGPLVHHSDRGLQYCSVLYQSVHERNGITCSM
TDGYDCYQNALAERINGILKNEFLLSRPADLEQAREIVKESVAIYNHERP
HQALKYKTPDDVHQAFYRQKTVNLYQD
>SC3729 yis2, putative integrase protein
MQADKTLNIGRDRLFNLLGEYRLLVPVKRAYHKTTNSHHRFYRHPNLLKP
GPEQVTALEPEQVWVADITYLPLRSGTAYLSLVTDACSRKIVGYHVGENL
QTENVVKAFRQALRRRKTAGPLVHHSDRGLQYCSVLYQSVHERNGITCSM
TDGYDCYQNALAERINGILKNEFLLSRPADLEQAREIVKESVAIYNHERP
HQALKYKTPDDVHQAFYRQKTVNLYQD
>SC1382 yis2, putative integrase protein
MQADKTLNIGRDRLFNLLGEYRLLVPVKRAYHKTTNSHHRFYRHPNLLKP
GPEQVTALEPEQVWVADITYLPLRSGTAYLSLVTDACSRKIVGYHVGENL
QTENVVKAFRQALRRRKTTGPLVHHSDRGLQYCSVLYQSVHERNGITCSM
TDGYDCYQNALAERINGILKNEFLLSRPADLEQAREIVKESVAIYNHERP
HQALKYKTPDDVHQAFYRQKTVNLYQD
>SC3104 yis2, putative integrase protein
MQADKTLNIGRDRLFNLLGEYRLLVPVKRAYHKTTNSHHRFYRHPNLLKH
GPEQVTALEPEQVWVADITYLPLRSGTAYLSLVTDACSRKIVGYHVGENL
QTENVVKAFRQALRRRKTTGPLVHHSDRGLQYCSVLYQSVHERNGITCSM
TDGYDCYQNALAERINGILKNEFLLSRPADLEQAREIVKESVAIYNHERP
HQALKYKTPDDVHQAFYRQKTVNLYQD
>SC1896 yis2, putative integrase protein
MQADKTLNIGRDRLFNLLGEYRLLVPVKRAYHKTTNSHHRFYRHPNLLKP
GPEQVTALEPEQVWVADITYLPLRSGTAYLSLVTDACSRKIVGYHVGENL
QTENVVKAFRQALRRRKTTGPLVHHSDRGLQYCSVLYQSVHERNGITCSM
TDGYDCYQNALAERINGILKNEFLLSRPADLEQAREIVKESVAIYNHERP
HQALKYKTPDDVHQAFYRQKTVNLYQD
>SC4047 yjaD, putative NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding
MDRIIEKLESGWWIVSHEQKLWLPYGELPHGLAANFDLVGQRALRIGEWQ
GEPVWLVLQHRRHDMGSVRQVIDQDAGLFQLAGRGVQLAEFYRSHKFCGY
CGHPMHPSKTEWAMLCSHCRERYYPQIAPCIIVAIRREDSILLAQHVRHR
NGVHTVLAGFVEVGETLEQAVAREVMEESGIKVKNLRYVTSQPWPFPQSL
MTAFMAEYDSGEIAIDPKELLEANWYHYDDLPLLPPPGTVARRLIEDTVA
MCRAEYD
>SC4412 yjjV, putative hydrolase
MSWRFIDTHCHFDFPPFTGDERASIQRACEAGVEKIIVPATEAAHFPRVL
ALAARFPSLYAALGLHPIVIERHADDDPDKLQQALAQQQNVVAVGEIGLD
LYRDDPQFARQERFLDAQLQLAKRYDLPVILHSRRTHDKLAMHLKRQDLP
RTGVVHGFAGSLQQAERFVRLGYKIGVGGTITYPRASKTRDVMARLPLDA
LLLETDAPDMPLKGFQGQPNRPEQAARVFDALCELRPEPAEVIADTLYRN
TITLFRL
>SC0855 yliI, putative dehydrogenase
MAKVDVKCPFCAQTASVKKYGPGSAGHQHYRCQACCRSFQVDYEYRACQP
GMKGQVVDLAMYNAGIRNPQGLAINPWSGALWLHEHGPRGGDEINIPEKG
KNYGWPLATWGVNYSGLKVPEAKGEIVEGTEQPVYYWKDSPAISGMAFYA
SDVFAPWRHKLFIGALKDKEVIVMRVDGNTVTEEGRILGDRKQRIRDVRV
GPDGYLYVLTDESDGQLLKVSPAATR
>SC1186 ymfB, putative MutT-like protein
MFKPHVTVACIVHAEDKFLVVEETINGKSLWNQPAGHLEADETLAQAAAR
ELWEETGITAQPQYFIRMHQWIAPDKTPFLRFLFAIKLDHICATEPHDND
IDCCRWVSADEILNAPNLRSPLVAESIRSYQTGQCYPLSIVGEFNWPFTE
GVK
>SC1815 yoaA, putative DNA helicase
MTDDFAADGQLAKAITGFKPREPQRQMAVAVTQAIENAQPLVVEAGTGTG
KTYAYLAPALRAGKKVIISTGSKALQDQLYSRDLPTVAKALAFTGKTALL
KGRSNYLCLERLEQQALAGGDLPVQTLSDVILLRSWSNQTRDGDISTCVS
VAEDSQAWPLVTSTNDNCLGSDCPLYKECFVVKARKKAMDADVVIVNHHL
FLADMVVKESGFGELIPQAEVMIFDEAHQLPDIASQYFGQSLSSRQLLDL
AKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLA
DSRIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRSRLKRLK
EINQPGYSYWYECTSRHFTLALTPLTVADKFKEVMEQKPGSWIFTSATLS
VNDDLHHFTARLGIEQAESMLLPSPFDYTRQALLCVPRNLPQTNQPGAAR
QLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATMTLPVLLQGETSK
GQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLL
KARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNR
LVMRPYGATFLASLPPAPRTRDIARAVRFLAIPSAE
>SC3037 yqgF, putative endonuclease involved in recombination
MSDTLLAFDFGTKSIGVAIGQRITGTARPLPAIKAQDGTPDWTLIERLLK
EWQPDEIIVGLPLNMDGTEQPLTARARKFANRIHGRFGVTVTLHDERLST
VEARSGLFERGGYRALNKGKVDSASAVIILESYFEQGY
>SC3129 yqiE, putative resistance protein
MRKSDNLPVTFTKSDVEIIARETRYRGFFSLDVYRFRHRLFNGEMSGEVK
REIFERGHAAVLLPFDPERDEVVLVEQIRIAAYDTSVTPWLLEMVAGMIE
EGETIEAVARREAMEEAGLTVGRTRPVISYLASPGGTSERSSILVGEVDA
TTAAGIHGLADENEDIRVHVVSREQAYQWVEEGKIDNAAAVIALQWLQLH
HQELKNEWKK
>SC3206 yraN, putative endonuclease
MRERGGEIDLIMRDGKTTVFVEVRYRRSGLYGGAAASVTRSKQHKLLHTA
RLWLARQNGSFDTVDCRFDVLAFTGNEIEWFRDAFNDHS
>SC3339 yrdD, putative DNA topoisomerase
MAKSALFSVRKNEPCPQCGAELVIRSGKHGPFLGCSRYPECDYVRPLKSQ
ADGHIVKILEGQLCPECGAVLVLRQGRFGMFIGCSQYPQCEHTVVIDKPD
ETAIACPACQQGHLVQRRSRYGKIFHSCDRYPECQFVINFTPVAGECSEC
HYPLLIEKKTAQGVKRFCASKQCGKPVPVE
>SC3426 yrfE, putative NTP pyrophosphohydrolase
MTTDYTAKILTMSKSLQKPTILKVETVAQSRLFNVESVDLEFSNGVRRVY
ERMRPSTREAVMIVPIVDEHLILIREYAVGTESYELGFSKGLIDPGETVF
EAANRELKEEVGFGAHNLTFLKKLSMAPSYFSSKMNIVVAEDLYPESLEG
DEPEPLPQVRWPLAHLMDLLEDPDFNEARNVSALFLVREWLKAQGRIA