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2024-05-16 15:40:48

Gene list

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COG category: Replication, recombination and repair
Organism: Phage Gifsy-1

Number of genes found: 214

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Phage Gifsy-1
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
NA SC3139 putative cytoplasmic proteinSubName: Full=Putative cytoplasmic protein; chromosome CDS3318657 402 + 0.504975
NA SC1005 ISSfl3 orfC,DSubName: Full=ISSfl3 orfC,D; chromosome CDS1121821 249 + 0.558233
NA SC2699 reverse transcriptase-like proteinSubName: Full=Reverse transcriptase-like protein; chromosome CDS2863501 960 + 0.41875
NA SC4352 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS4655773 2088 + 0.340996
NA SC1895 putative cytoplasmic proteinSubName: Full=Putative cytoplasmic protein; chromosome CDS2005314 402 + 0.504975
NA SC2689 large repetitive proteinSubName: Full=Large repetitive protein; chromosome CDS2844757 558 + 0.539427
NA SC4375 putative cytoplasmic proteinSubName: Full=Putative cytoplasmic protein; chromosome CDS4683121 402 - 0.504975
NA SC3730 putative cytoplasmic proteinSubName: Full=Putative cytoplasmic protein; chromosome CDS3949839 402 - 0.504975
NA SC3583 putative cytoplasmic proteinSubName: Full=Putative cytoplasmic protein; chromosome CDS3788396 402 + 0.504975
NA SC2404 putative cytoplasmic proteinSubName: Full=Putative cytoplasmic protein; chromosome CDS2530743 402 - 0.504975
NA SC2009 Hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS2107730 249 + 0.46988
NA SC0902 probable integrase remnantSubName: Full=Probable integrase remnant; chromosome CDS1010568 378 - 0.457672
NA SC0033 putative cytoplasmic proteinSubName: Full=Putative cytoplasmic protein; chromosome CDS38504 1254 + 0.501595
NA SC3103 putative cytoplasmic proteinSubName: Full=Putative cytoplasmic protein; chromosome CDS3280415 402 + 0.504975
NA SC3986 putative cytoplasmic proteinSubName: Full=Putative cytoplasmic protein; chromosome CDS4239137 402 + 0.504975
NA SC2882 putative cytoplasmic proteinSubName: Full=Putative cytoplasmic protein; chromosome CDS3047938 402 + 0.504975
NA SC1146 putative cytoplasmic proteinSubName: Full=Putative cytoplasmic protein; chromosome CDS1261848 402 + 0.504975
NA SC0327 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS376118 462 - 0.480519
NA SC3675 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS3890842 507 - 0.512821
NA SC1383 putative cytoplasmic proteinSubName: Full=Putative cytoplasmic protein; chromosome CDS1481795 402 - 0.504975
NA SC2004 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS2105173 171 + 0.48538
NA SC0937 putative cytoplasmic proteinSubName: Full=Putative cytoplasmic protein; chromosome CDS1051963 402 + 0.504975
NA SC2146 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS2249113 534 - 0.337079
NA SC0291 putative integrase core domainSubName: Full=Putative integrase core domain; chromosome CDS335820 282 + 0.450355
NA SC1208 hypothetical protein chromosome CDS1322370 183 + 0.480874
NA SC2855 putative cytoplasmic proteinSubName: Full=Putative cytoplasmic protein; chromosome CDS3019921 402 - 0.504975
TnpA SC4196 TnpASubName: Full=TnpA; chromosome CDS4498629 180 - 0.483333
TnpR SC4068 transposase of Tn10SubName: Full=Transposase of Tn10; chromosome CDS4345931 1209 + 0.448304
TnpR SC0853 transposase of Tn10SubName: Full=Transposase of Tn10; chromosome CDS958616 1209 - 0.448304
TnpR SC0584 transposase of Tn10SubName: Full=Transposase of Tn10; chromosome CDS649958 1209 - 0.448304
TnpR SC3541 transposase of Tn10SubName: Full=Transposase of Tn10; chromosome CDS3738634 1209 - 0.448304
ada SC2269 O6-methylguanine-DNA methyltransferase; transcription activator/repressor (AraC/Xyl family)SubName: Full=O6-methylguanine-DNA methyltransferase transcription activator/repressor (AraC/Xyl family); chromosome CDS2377418 1062 - 0.610169
alkA SC2127 3-methyl-adenine DNA glycosylase II, inducibleSubName: Full=3-methyl-adenine DNA glycosylase II, inducible; chromosome CDS2223962 870 - 0.611494
alkB SC2268 DNA repair system specific for alkylated DNASubName: Full=DNA repair system specific for alkylated DNA; chromosome CDS2376765 651 - 0.588326
cho SC1330 putative nuclease subunit of the excinuclease complexSubName: Full=Putative nuclease subunit of the excinuclease complex; chromosome CDS1427780 909 - 0.551155
dam SC3416 DNA adenine methylaseSubName: Full=DNA adenine methylase; chromosome CDS3592180 837 - 0.491039
dbpA SC1650 ATP-dependent RNA helicase, stimulated by 23S rRNARecName: Full=ATP-dependent RNA helicase DbpA; EC=3.6.4.13; chromosome CDS1761471 1374 - 0.547307
dcm SC1995 DNA cytosine methylaseRecName: Full=Cytosine-specific methyltransferase; EC=2.1.1.37; chromosome CDS2096090 1431 - 0.538085
deaD SC3221 cysteine sulfinate desulfinaseRecName: Full=ATP-dependent RNA helicase DeaD; EC=3.6.4.13; AltName: Full=Cold-shock DEAD box protein A; chromosome CDS3402212 1956 - 0.576176
dinG SC0818 LexA regulated (SOS) repair enzymeRecName: Full=Probable ATP-dependent helicase DinG; EC=3.6.4.12; AltName: Full=DNA-damage-inducible protein G; chromosome CDS915751 2145 + 0.545455
dinP SC0314 DNA polymerase IV, devoid of proofreading, damage-inducible protein PRecName: Full=DNA polymerase IV; Short=Pol IV; EC=2.7.7.7; chromosome CDS361755 1056 + 0.517992
dnaA SC3756 DNA replication initiator proteinRecName: Full=Chromosomal replication initiator protein DnaA; chromosome CDS3982617 1401 - 0.526767
dnaB SC4125 putative replicative DNA helicase;chromosome replication; chain elongationSubName: Full=Putative replicative DNA helicasechromosome replication chain elongation; chromosome CDS4401209 1416 + 0.550141
dnaC SC4395 chromosome replication; initiation and chain elongationSubName: Full=Chromosome replication initiation and chain elongation; chromosome CDS4705102 738 - 0.51355
dnaC SC2631 Gifsy-1 prophage DnaCSubName: Full=Gifsy-1 prophage DnaC; chromosome CDS2784193 750 - 0.529333
dnaE SC0231 DNA polymerase III, alpha subunitSubName: Full=DNA polymerase III, alpha subunit; chromosome CDS265542 3483 + 0.560149
dnaG SC3157 DNA biosynthesis; DNA primaseRecName: Full=DNA primase; EC=2.7.7.-; chromosome CDS3336580 1746 + 0.516609
dnaN SC3755 DNA polymerase III, beta-subunitRecName: Full=DNA polymerase III subunit beta; EC=2.7.7.7; chromosome CDS3981512 1101 - 0.565849
dnaQ SC0260 DNA polymerase III, epsilon subunit, 3-5 exonucleolytic proofreading functionSubName: Full=DNA polymerase III, epsilon subunit, 3-5 exonucleolytic proofreading function; chromosome CDS299302 741 + 0.516869
dnaX SC0525 DNA polymerase III, tau and gamma subunits; DNA elongation factor IIISubName: Full=DNA polymerase III, tau and gamma subunits DNA elongation factor III; chromosome CDS585264 1929 + 0.590461
endA SC3033 DNA-specific endonuclease ISubName: Full=DNA-specific endonuclease I; chromosome CDS3214895 708 + 0.564972
exo SC2911 exonuclease IX, 5'-3' exonucleaseRecName: Full=Flap endonuclease Xni; Short=FEN; EC=3.1.-.-; chromosome CDS3083304 816 + 0.556373
exoX SC1883 DNA exonuclease X, degrades ss and ds DNA with 3'-5' polaritySubName: Full=DNA exonuclease X, degrades ss and ds DNA with 3-5 polarity; chromosome CDS1992331 699 + 0.516452
fis SC3323 DNA-binding protein fisRecName: Full=DNA-binding protein Fis; chromosome CDS3510997 297 + 0.464646
gipA SC1223 Gifsy-1 prophage GlpASubName: Full=Gifsy-1 prophage GlpA; chromosome CDS1333322 1131 - 0.54023
gyrA SC2275 DNA gyrase, subunit A, type II topoisomeraseRecName: Full=DNA gyrase subunit A; EC=5.99.1.3; chromosome CDS2387994 2637 - 0.555556
gyrB SC3753 DNA gyrase, subunit B (type II topoisomerase)RecName: Full=DNA gyrase subunit B; EC=5.99.1.3; chromosome CDS3977848 2415 - 0.553623
helD SC1027 DNA helicase IVSubName: Full=DNA helicase IV; chromosome CDS1147048 2055 + 0.549878
hepA SC0091 RNA polymerase associated protein, putative SNF2 family RNA helicaseRecName: Full=RNA polymerase-associated protein RapA; EC=3.6.4.-; AltName: Full=ATP-dependent helicase HepA; chromosome CDS104220 2907 - 0.570691
himA SC1358 integration host factor (IHF), alpha subunitRecName: Full=Integration host factor subunit alpha; Short=IHF-alpha; chromosome CDS1455175 300 + 0.483333
himD SC0936 integration host factor (IHF), beta subunit; site-specific recombinationRecName: Full=Integration host factor subunit beta; Short=IHF-beta; chromosome CDS1051566 285 + 0.501754
hin SC2702 H inversion: regulation of flagellar gene expression by site-specific inversion of DNASubName: Full=H inversion: regulation of flagellar gene expression by site-specific inversion of DNA; chromosome CDS2869796 573 - 0.464223
holA SC0676 DNA polymerase III, delta subunitSubName: Full=DNA polymerase III, delta subunit; chromosome CDS750036 1032 - 0.575581
holB SC1151 DNA polymerase III, delta prime subunitSubName: Full=DNA polymerase III, delta prime subunit; chromosome CDS1265635 1005 + 0.58806
holC SC4332 DNA polymerase III, chi subunitSubName: Full=DNA polymerase III, chi subunit; chromosome CDS4633821 444 - 0.54955
hrpA SC1636 helicase, ATP-dependentSubName: Full=Helicase, ATP-dependent; chromosome CDS1744490 3903 - 0.537535
hrpB SC0189 helicase, ATP-dependentSubName: Full=Helicase, ATP-dependent; chromosome CDS214415 2475 + 0.593939
hupA SC4051 DNA-binding protein HU-alpha (HU-2)SubName: Full=DNA-binding protein HU-alpha (HU-2); chromosome CDS4320284 273 + 0.47619
hupB SC0493 DNA-binding protein HU-beta, NS1 (HU-1)SubName: Full=DNA-binding protein HU-beta, NS1 (HU-1); chromosome CDS552463 273 + 0.494505
insA SC1833 Insertion element IS1 1/2/3/5/6 protein insASubName: Full=Insertion element IS1 1/2/3/5/6 protein insA; SubName: Full=Transposition protein; chromosome CDS1951664 276 + 0.532609
insB SC1834 IS1 transposaseSubName: Full=IS1 transposase; chromosome CDS1951858 504 + 0.547619
insF SC2505 putative IS3-like transposaseSubName: Full=Putative IS3-like transposase; chromosome CDS2639743 345 - 0.481159
insF SC0371 putative IS3 transposaseSubName: Full=Putative IS3 transposase; chromosome CDS413672 864 - 0.543981
insF SC4193 Transposase insF for insertion sequence IS3A/B/C/DSubName: Full=Transposase insF for insertion sequence IS3A/B/C/D; chromosome CDS4496512 309 + 0.556634
insK SC3588 Putative transposase insK for insertion sequence eSubName: Full=Putative transposase insK for insertion sequence e; chromosome CDS3791407 192 - 0.375
insM SC2698 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS2862036 840 + 0.519048
insN SC2697 Transposase insN for insertion sequence element ISSubName: Full=Transposase insN for insertion sequence element IS; chromosome CDS2861671 339 + 0.457227
int SC2641 Gifsy-1 prophage IntSubName: Full=Gifsy-1 prophage Int; chromosome CDS2792811 903 - 0.491694
int SC2854 putative integrase proteinSubName: Full=Putative integrase protein; chromosome CDS3019067 684 - 0.501462
int SC2507 site-specific recombinase, phage integrase familySubName: Full=Site-specific recombinase, phage integrase family; chromosome CDS2642981 261 - 0.475096
int SC0324 IntSubName: Full=Int; chromosome CDS372847 1164 - 0.487972
int SC2883 putative integrase proteinSubName: Full=Putative integrase protein; chromosome CDS3048510 684 + 0.501462
int SC2005 putative P4-type integraseSubName: Full=Putative P4-type integrase; chromosome CDS2105357 189 + 0.502645
int SC1876 putative phage integrase proteinSubName: Full=Putative phage integrase protein; chromosome CDS1988441 741 + 0.483131
intE SC1190 Prophage lambda integrase (Int(Lambda))SubName: Full=Prophage lambda integrase (Int(Lambda)); chromosome CDS1307027 1128 - 0.475177
intQ SC0963 Gifsy-2 prophage integraseSubName: Full=Gifsy-2 prophage integrase; chromosome CDS1083517 1278 - 0.485915
intR SC1648 Putative lambdoid prophage Rac integraseSubName: Full=Putative lambdoid prophage Rac integrase; chromosome CDS1760300 141 + 0.482269
istB SC0299 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS344862 267 - 0.531835
lig SC2425 DNA ligaseRecName: Full=DNA ligase; EC=6.5.1.2; AltName: Full=Polydeoxyribonucleotide synthase [NAD(+)]; chromosome CDS2554602 2016 - 0.571925
mfd SC1166 transcription-repair coupling factorRecName: Full=Transcription-repair-coupling factor; Short=TRCF; EC=3.6.4.-; chromosome CDS1280258 3447 - 0.570641
mod SC0398 DNA methylase; restriction systemSubName: Full=DNA methylase restriction system; chromosome CDS447872 1959 + 0.466054
mta SC4351 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS4654491 1272 + 0.323113
mug SC3159 DNA glycosylase, G/U mismatch specificRecName: Full=G/U mismatch-specific DNA glycosylase; EC=3.2.2.28; AltName: Full=Double-strand-specific uracil glycosylase; AltName: Full=Mismatch-specific uracil DNA-glycosylase; Short=MUG; chromosome CDS3340439 507 - 0.530572
mutH SC2944 methyl-directed mismatch repair proteinRecName: Full=DNA mismatch repair protein MutH; AltName: Full=Methyl-directed mismatch repair protein; chromosome CDS3123074 696 + 0.579023
mutL SC4235 enzyme in methyl-directed mismatch repair, stimulates binding of Vsr and MutS to heteroduplex DNARecName: Full=DNA mismatch repair protein MutL; chromosome CDS4536395 1857 + 0.581583
mutM SC3649 formamidopyrimidine DNA glycosylaseRecName: Full=Formamidopyrimidine-DNA glycosylase; Short=Fapy-DNA glycosylase; EC=3.2.2.23; AltName: Full=DNA-(apurinic or apyrimidinic site) lyase MutM; Short=AP lyase MutM; EC=4.2.99.18; chromosome CDS3863431 810 - 0.551852
mutS SC2841 methyl-directed mismatch repair, recognize exocyclic adducts of guanosineRecName: Full=DNA mismatch repair protein MutS; chromosome CDS3003905 2568 + 0.570483
mutT SC0134 7,8-dihydro-8-oxoguanine-triphosphatase, prefers dGTPSubName: Full=7,8-dihydro-8-oxoguanine-triphosphatase, prefers dGTP; chromosome CDS155879 396 + 0.525253
mutY SC3051 adenine DNA glycosylaseSubName: Full=Adenine DNA glycosylase; chromosome CDS3228177 1053 + 0.545109
nei SC0734 endonuclease VIII removing oxidized pyrimidines may also remove oxidized purines in absence of MutY and FpgRecName: Full=Endonuclease 8; AltName: Full=DNA glycosylase/AP lyase Nei; EC=3.2.2.-; EC=4.2.99.18; AltName: Full=DNA-(apurinic or apyrimidinic site) lyase Nei; AltName: Full=Endonuclease VIII; chromosome CDS823126 792 + 0.52904
nfi SC4049 endonuclease V (deoxyinosine 3'endoduclease)RecName: Full=Endonuclease V; EC=3.1.21.7; AltName: Full=Deoxyinosine 3endonuclease; AltName: Full=Deoxyribonuclease V; Short=DNase V; chromosome CDS4318794 672 + 0.589286
nfo SC2219 endonuclease IVRecName: Full=Probable endonuclease 4; EC=3.1.21.2; AltName: Full=Endodeoxyribonuclease IV; AltName: Full=Endonuclease IV; chromosome CDS2325174 858 + 0.538462
nth SC1471 endonuclease III; DNA glycosylase/apyrimidinic (AP) lyaseRecName: Full=Endonuclease III; EC=4.2.99.18; AltName: Full=DNA-(apurinic or apyrimidinic site) lyase; chromosome CDS1566241 636 - 0.514151
ntpA SC1908 dATP pyrophosphohydrolaseSubName: Full=dATP pyrophosphohydrolase; chromosome CDS2017137 453 - 0.520971
nudG SC1323 putative mutator MutT proteinSubName: Full=Putative mutator MutT protein; chromosome CDS1421439 417 - 0.577938
ogt SC1655 O-6-alkylguanine-DNA/cysteine-proteinmethyltrans feraseRecName: Full=Methylated-DNA--protein-cysteine methyltransferase; EC=2.1.1.63; AltName: Full=6-O-methylguanine-DNA methyltransferase; AltName: Full=O-6-methylguanine-DNA-alkyltransferase; chromosome CDS1766829 516 + 0.550388
parC SC3118 DNA topoisomerase IV, subunit ARecName: Full=DNA topoisomerase 4 subunit A; EC=5.99.1.3; AltName: Full=Topoisomerase IV subunit A; chromosome CDS3297709 2250 - 0.558667
parE SC3125 DNA topoisomerase IV, subunit BRecName: Full=DNA topoisomerase 4 subunit B; EC=5.99.1.3; AltName: Full=Topoisomerase IV subunit B; chromosome CDS3304724 1893 - 0.553619
phrB SC0728 deoxyribodipyrimidine photolyase (photoreactivation)SubName: Full=Deoxyribodipyrimidine photolyase (Photoreactivation); chromosome CDS816668 1341 + 0.57047
polA SC3891 DNA polymerase I, 3'--> 5' polymerase, 5'--> 3' and 3'--> 5' exonucleaseSubName: Full=DNA polymerase I, 3--> 5 polymerase, 5--> 3 and 3--> 5 exonuclease; chromosome CDS4140207 2787 + 0.537495
polB SC0092 DNA polymerase II and and 3'--> 5' exonucleaseRecName: Full=DNA polymerase; EC=2.7.7.7; chromosome CDS107300 2352 - 0.568027
priA SC3984 primosomal protein N' (= factor Y) directs replication fork assembly at D-loopsSubName: Full=Primosomal protein N (= factor Y) directs replication fork assembly at D-loops; chromosome CDS4236421 2199 - 0.592997
priB SC4266 primosomal replication protein NRecName: Full=Primosomal replication protein n; chromosome CDS4565608 315 + 0.533333
priC SC0522 primosomal replication protein NSubName: Full=Primosomal replication protein N; chromosome CDS583473 528 - 0.589015
radC SC3652 putative DNA repair protein, associated with replication forksRecName: Full=UPF0758 protein YicR; chromosome CDS3864980 666 - 0.528529
rdgC SC0433 putative exonuclease involved in removal of stalled replication forkSubName: Full=Putative exonuclease involved in removal of stalled replication fork; chromosome CDS487423 984 - 0.53252
recA SC2762 DNA strand exchange and recombination protein with proteiase and nuclease activityRecName: Full=Protein RecA; AltName: Full=Recombinase A; chromosome CDS2929266 1062 - 0.547081
recB SC2932 exonuclease V, beta chainSubName: Full=Exonuclease V, beta chain; chromosome CDS3105801 3546 - 0.55612
recC SC2934 exonuclease V, subunitSubName: Full=Exonuclease V, subunit; chromosome CDS3112405 3372 - 0.538256
recD SC2931 exonuclease V, alpha chainSubName: Full=Exonuclease V, alpha chain; chromosome CDS3103969 1836 - 0.583333
recF SC3754 gap repair proteinRecName: Full=DNA replication and repair protein RecF; chromosome CDS3980291 1074 - 0.546555
recG SC3668 DNA helicase, resolution of Holliday junctions, branch migrationSubName: Full=DNA helicase, resolution of Holliday junctions, branch migration; chromosome CDS3879181 2082 + 0.580211
recJ SC2982 ssDNA exonuclease, 5'--> 3' specific, Mg dependentSubName: Full=SsDNA exonuclease, 5--> 3 specific, Mg dependent; chromosome CDS3160121 1734 - 0.576125
recN SC2684 recombination and DNA repair proteinRecName: Full=DNA repair protein RecN; AltName: Full=Recombination protein N; chromosome CDS2840442 1662 + 0.545728
recO SC2574 gap repair geneRecName: Full=DNA repair protein RecO; AltName: Full=Recombination protein O; chromosome CDS2743647 729 - 0.554184
recQ SC3857 ATP-dependent DNA helicaseSubName: Full=ATP-dependent DNA helicase; chromosome CDS4096800 1848 + 0.549242
recR SC0527 putative recombination protein, gap repairRecName: Full=Recombination protein RecR; chromosome CDS587567 606 + 0.613861
recT SC1870 RecT proteinSubName: Full=RecT protein; chromosome CDS1982538 324 + 0.58642
recT SC1871 RecT proteinSubName: Full=RecT protein; chromosome CDS1982653 342 + 0.54386
relB SC4304 putative helix-turn-helix protein, copG familySubName: Full=Putative helix-turn-helix protein, copG family; chromosome CDS4605958 243 + 0.497942
rep SC3818 rep helicase, a single-stranded DNA dependent ATPaseSubName: Full=Rep helicase, a single-stranded DNA dependent ATPase; chromosome CDS4054793 2124 + 0.529661
rhlB SC3820 putative helicaseRecName: Full=ATP-dependent RNA helicase RhlB; EC=3.6.4.13; chromosome CDS4058556 1266 - 0.548183
rhlE SC0817 putative ATP-dependent RNA helicaseRecName: Full=ATP-dependent RNA helicase RhlE; EC=3.6.4.13; chromosome CDS914182 1362 + 0.586637
rnhA SC0259 RNase HI, degrades RNA of DNA-RNA hybridsRecName: Full=Ribonuclease H; Short=RNase H; EC=3.1.26.4; chromosome CDS298780 825 - 0.494545
rnhB SC0230 RNAse HIIRecName: Full=Ribonuclease HII; Short=RNase HII; EC=3.1.26.4; chromosome CDS264922 597 + 0.559464
rnt SC1453 RNase T, degrades tRNA, has exonuclease and ssDNAse activityRecName: Full=Ribonuclease T; EC=3.1.13.-; AltName: Full=Exoribonuclease T; Short=RNase T; chromosome CDS1549391 648 - 0.537037
rusA SC0344 RusRecName: Full=Crossover junction endodeoxyribonuclease rusA; EC=3.1.22.4; chromosome CDS389632 396 + 0.515152
rusA SC1203 crossover junction endodeoxyribonucleaseRecName: Full=Crossover junction endodeoxyribonuclease rusA; EC=3.1.22.4; chromosome CDS1318660 390 + 0.535897
ruvA SC1903 Holliday junction helicase subunit ARecName: Full=Holliday junction ATP-dependent DNA helicase RuvA; EC=3.6.4.12; chromosome CDS2012648 612 - 0.547386
ruvB SC1902 Holliday junction helicase, subunit BRecName: Full=Holliday junction ATP-dependent DNA helicase RuvB; EC=3.6.4.12; chromosome CDS2011629 1011 - 0.571711
ruvC SC1906 Holliday junction nucleaseRecName: Full=Crossover junction endodeoxyribonuclease RuvC; EC=3.1.22.4; AltName: Full=Holliday junction nuclease RuvC; AltName: Full=Holliday junction resolvase RuvC; chromosome CDS2015809 522 - 0.561303
sbcB SC2077 exonuclease I, 3'--> 5' specific; deoxyribophosphodiesteraseRecName: Full=Exodeoxyribonuclease I; EC=3.1.11.1; chromosome CDS2165574 1431 + 0.542977
sbcC SC0436 ATP-dependent dsDNA exonucleaseSubName: Full=ATP-dependent dsDNA exonuclease; chromosome CDS490733 3141 - 0.583572
sbcD SC0437 ATP-dependent dsDNA exonucleaseSubName: Full=ATP-dependent dsDNA exonuclease; chromosome CDS493870 1203 - 0.56276
sbmC SC2070 DNA gyrase inhibitorRecName: Full=DNA gyrase inhibitor; chromosome CDS2156699 468 - 0.512821
seqA SC0717 negative modulator of initiation of replication, inhibits open complex formation, mutation in gene alters cell membraneRecName: Full=Negative modulator of initiation of replication; chromosome CDS801050 576 + 0.505208
smf SC3341 putative protein involved in DNA uptakeSubName: Full=Uncharacterized protein; chromosome CDS3530122 1125 - 0.539556
srmB SC2648 ATP-dependent RNA helicaseRecName: Full=ATP-dependent RNA helicase SrmB; EC=3.6.4.13; chromosome CDS2800126 1335 + 0.54382
ssb SC0332 ssDNA-binding protein controls activity of RecBCD nucleaseRecName: Full=Single-stranded DNA-binding protein; chromosome CDS379366 507 - 0.502959
ssb SC4134 ssDNA-binding protein controls activity of RecBCD nucleaseRecName: Full=Single-stranded DNA-binding protein; chromosome CDS4410904 531 + 0.595104
tag SC3574 3-methyl-adenine DNA glycosylase I, constitutiveSubName: Full=3-methyl-adenine DNA glycosylase I, constitutive; chromosome CDS3780133 582 + 0.522337
terS SC1214 Gifsy-1 prophage DNA packaging proteinSubName: Full=Gifsy-1 prophage DNA packaging protein; chromosome CDS1325337 546 + 0.527473
tnp SC1859 putative transposaseSubName: Full=Putative transposase; chromosome CDS1972641 141 - 0.510638
tnp SC3589 transposase of Tn10SubName: Full=Transposase of Tn10; chromosome CDS3792031 1209 - 0.448304
tnpA SC3676 TransposaseSubName: Full=Transposase; chromosome CDS3891729 159 + 0.446541
tnpR SC1191 transposase of Tn10SubName: Full=Transposase of Tn10; chromosome CDS1308400 1209 + 0.448304
tnpR SC2224 transposase of Tn10SubName: Full=Transposase of Tn10; chromosome CDS2331705 1209 - 0.448304
topA SC1711 DNA topoisomerase type I, omega proteinRecName: Full=DNA topoisomerase 1; EC=5.99.1.2; AltName: Full=DNA topoisomerase I; chromosome CDS1822924 2598 - 0.541185
topB SC1320 DNA topoisomerase IIIRecName: Full=DNA topoisomerase 3; EC=5.99.1.2; AltName: Full=DNA topoisomerase III; chromosome CDS1417586 2007 + 0.563528
umuC SC2000 error-prone repair: component of DNA polymerase V with UmuD'SubName: Full=Error-prone repair: component of DNA polymerase V with UmuD; chromosome CDS2101647 1269 - 0.546887
ung SC2652 uracil-DNA-glycosylaseRecName: Full=Uracil-DNA glycosylase; Short=UDG; EC=3.2.2.27; chromosome CDS2803831 690 + 0.550725
uvrA SC4133 UvrA with UvrBC is a DNA excision repalr enzymeRecName: Full=UvrABC system protein A; Short=UvrA protein; AltName: Full=Excinuclease ABC subunit A; chromosome CDS4407831 2826 - 0.570771
uvrB SC0796 UvrB with UvrAC is a DNA excision repair enzymeRecName: Full=UvrABC system protein B; Short=Protein UvrB; AltName: Full=Excinuclease ABC subunit B; chromosome CDS893061 2022 + 0.553412
uvrC SC1949 UvrC with UvrAB is a DNA excision repair enzymeRecName: Full=UvrABC system protein C; Short=Protein UvrC; AltName: Full=Excinuclease ABC subunit C; chromosome CDS2058882 1833 - 0.53737
uvrD SC3850 DNA-dependent ATPase I and helicase IISubName: Full=DNA-dependent ATPase I and helicase II; chromosome CDS4089779 2163 + 0.578826
vsr SC1994 DNA mismatch endonuclease, patch repair proteinSubName: Full=DNA mismatch endonuclease, patch repair protein; chromosome CDS2095639 471 - 0.566879
wcaI SC2108 putative glycosyl transferase in colanic acid biosynthesisRecName: Full=GDP-mannose mannosyl hydrolase; Short=GDPMH; EC=3.6.1.-; chromosome CDS2203633 474 - 0.597046
xerC SC3848 putative integrase/recombinase, site-specificRecName: Full=Tyrosine recombinase XerC; chromosome CDS4088025 903 + 0.568106
xerD SC2984 recombinase, site-specificRecName: Full=Tyrosine recombinase XerD; chromosome CDS3162597 897 - 0.540691
xseA SC2510 exonuclease VII, large subunitRecName: Full=Exodeoxyribonuclease 7 large subunit; EC=3.1.11.6; AltName: Full=Exodeoxyribonuclease VII large subunit; chromosome CDS2646899 1272 + 0.590409
xseB SC0465 exonuclease VII, small subunitRecName: Full=Exodeoxyribonuclease 7 small subunit; EC=3.1.11.6; AltName: Full=Exodeoxyribonuclease VII small subunit; Short=Exonuclease VII small subunit; chromosome CDS521830 243 - 0.54321
xthA SC1324 exonuclease III, may repair singlet oxygen induced lesionsSubName: Full=Exonuclease III, may repair singlet oxygen induced lesions; chromosome CDS1421928 807 - 0.526642
ybaV SC0495 putative DNA uptake protein and related DNA-binding proteinsSubName: Full=Putative DNA uptake protein and related DNA-binding proteins; chromosome CDS555047 375 + 0.525333
ybaZ SC0509 putative methyltransferaseSubName: Full=Putative methyltransferase; chromosome CDS568325 390 - 0.558974
ybjD SC0894 RecF protein-like proteinSubName: Full=RecF protein-like protein; chromosome CDS1000882 1659 + 0.553948
ycaJ SC0916 paral putative polynucleotide enzymeSubName: Full=Paral putative polynucleotide enzyme; chromosome CDS1026142 1344 + 0.569196
ycfH SC1152 putative metal-dependent hydrolaseSubName: Full=Putative metal-dependent hydrolase; chromosome CDS1266650 798 + 0.532581
yeaB SC1819 putative NTP pyrophosphohydrolaseRecName: Full=Uncharacterized Nudix hydrolase NudL; EC=3.6.1.-; chromosome CDS1937710 579 + 0.588946
yebY SC1878 putative periplasmic or exported proteinSubName: Full=Putative periplasmic or exported protein; chromosome CDS1989555 354 - 0.533898
yejH SC2240 putative ATP-dependent helicaseSubName: Full=Putative ATP-dependent helicase; chromosome CDS2348398 1761 + 0.570698
yfaO SC2297 putative NTP pyrophosphohydrolases including oxidative damage repair enzymesRecName: Full=Nucleoside triphosphatase NudI; EC=3.6.1.-; chromosome CDS2416877 426 + 0.495305
yfcD SC2347 putative NTP pyrophosphohydrolaseSubName: Full=Putative NTP pyrophosphohydrolase; chromosome CDS2472819 555 - 0.544144
yffH SC2473 putative pyrophosphohydrolaseRecName: Full=GDP-mannose pyrophosphatase NudK; EC=3.6.1.-; chromosome CDS2600973 576 - 0.491319
yfgE SC2493 putative ATPase involved in DNA replication initiationRecName: Full=DnaA regulatory inactivator Hda; chromosome CDS2627156 726 - 0.535813
ygbT SC2870 putative cytoplasmic proteinRecName: Full=CRISPR-associated endonuclease Cas1; EC=3.1.-.-; chromosome CDS3032195 921 - 0.553746
ygdP SC2943 putative invasion protein; NTP pyrophosphohydrolaseRecName: Full=RNA pyrophosphohydrolase; EC=3.6.1.-; AltName: Full=(Di)nucleoside polyphosphate hydrolase; chromosome CDS3121861 531 - 0.506591
yhbQ SC3212 putative cytoplasmic proteinRecName: Full=UPF0213 protein YhbQ; chromosome CDS3394713 363 + 0.526171
yhdJ SC3324 putative methyltransferaseSubName: Full=Putative methyltransferase; chromosome CDS3511373 891 + 0.451178
yhhF SC3501 putative methyltransferaseRecName: Full=Ribosomal RNA small subunit methyltransferase D; EC=2.1.1.171; chromosome CDS3694461 597 + 0.566164
yhhM SC3503 putative inner membrane proteinSubName: Full=Putative inner membrane protein; chromosome CDS3695338 372 - 0.526882
yibL SC3613 putative cytoplasmic proteinSubName: Full=Putative cytoplasmic protein; chromosome CDS3822198 363 + 0.509642
yicF SC3662 putative DNA ligaseRecName: Full=DNA ligase B; EC=6.5.1.2; AltName: Full=Polydeoxyribonucleotide synthase [NAD(+)] B; chromosome CDS3873456 1509 - 0.565275
yigW SC3874 putative hydrolase of PHP superfamilyRecName: Full=Tat-linked quality control protein TatD; AltName: Full=Deoxyribonuclease TatD; chromosome CDS4116366 783 + 0.542784
yis SC0938 putative integrase proteinSubName: Full=Putative integrase protein; chromosome CDS1052535 684 + 0.501462
yis2 SC3104 putative integrase proteinSubName: Full=Putative integrase protein; chromosome CDS3280987 684 + 0.5
yis2 SC3584 putative integrase proteinSubName: Full=Putative integrase protein; chromosome CDS3788968 684 + 0.501462
yis2 SC3729 putative integrase proteinSubName: Full=Putative integrase protein; chromosome CDS3948985 684 - 0.502924
yis2 SC1896 putative integrase proteinSubName: Full=Putative integrase protein; chromosome CDS2005886 684 + 0.501462
yis2 SC4374 putative integrase proteinSubName: Full=Putative integrase protein; chromosome CDS4682267 684 - 0.501462
yis2 SC3140 putative integrase proteinSubName: Full=Putative integrase protein; chromosome CDS3319229 684 + 0.501462
yis2 SC2403 putative integrase proteinSubName: Full=Putative integrase protein; chromosome CDS2529889 684 - 0.501462
yis2 SC3987 putative integrase proteinSubName: Full=Putative integrase protein; chromosome CDS4239709 684 + 0.501462
yis2 SC1147 putative integrase proteinSubName: Full=Putative integrase protein; chromosome CDS1262420 684 + 0.501462
yis2 SC1382 putative integrase proteinSubName: Full=Putative integrase protein; chromosome CDS1480941 684 - 0.501462
yjaD SC4047 putative NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-bindingRecName: Full=NADH pyrophosphatase; EC=3.6.1.22; chromosome CDS4316906 774 + 0.55168
yjjV SC4412 putative hydrolaseSubName: Full=Putative hydrolase; chromosome CDS4720289 774 + 0.602067
yliI SC0855 putative dehydrogenaseSubName: Full=Putative dehydrogenase; chromosome CDS961697 681 + 0.544787
ymfB SC1186 putative MutT-like proteinSubName: Full=Putative MutT-like protein; chromosome CDS1304113 462 - 0.517316
yoaA SC1815 putative DNA helicaseSubName: Full=Putative DNA helicase; chromosome CDS1933690 1911 - 0.562533
yqgF SC3037 putative endonuclease involved in recombinationRecName: Full=Putative Holliday junction resolvase; EC=3.1.-.-; chromosome CDS3218156 417 + 0.549161
yqiE SC3129 putative resistance proteinSubName: Full=Putative resistance protein; chromosome CDS3308496 633 - 0.535545
yraN SC3206 putative endonucleaseSubName: Full=Putative endonuclease; chromosome CDS3391480 270 + 0.544444
yrdD SC3339 putative DNA topoisomeraseSubName: Full=Putative DNA topoisomerase; chromosome CDS3529108 543 - 0.528545
yrfE SC3426 putative NTP pyrophosphohydrolaseSubName: Full=Putative NTP pyrophosphohydrolase; chromosome CDS3602791 597 - 0.522613