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2024-05-20 04:38:28

Gene list

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COG category: Replication, recombination and repair
Organism: Lactobacillus johnsonii NCC 533, NCC 533

Number of genes found: 130

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Lactobacillus johnsonii NCC 533, NCC 533
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
NA LJ0467 Holliday junction DNA helicase RuvARecName: Full=Holliday junction ATP-dependent DNA helicase RuvA; EC=3.6.4.12; chromosome CDS512087 579 + 0.35924
NA LJ1174 ATP-dependent DNA helicase RecQSubName: Full=ATP-dependent DNA helicase RecQ; chromosome CDS1096388 1797 + 0.33222
NA LJ1650 formamidopyrimidine-DNA glycosylaseRecName: Full=Formamidopyrimidine-DNA glycosylase; Short=Fapy-DNA glycosylase; EC=3.2.2.23; AltName: Full=DNA-(apurinic or apyrimidinic site) lyase MutM; Short=AP lyase MutM; EC=4.2.99.18; chromosome CDS1524460 831 - 0.361011
NA LJ0275 transposaseSubName: Full=Transposase; chromosome CDS308537 1050 - 0.382857
NA LJ0088 3-methyladenine DNA glycosylaseRecName: Full=Putative 3-methyladenine DNA glycosylase; EC=3.2.2.-; chromosome CDS111467 627 - 0.379585
NA LJ1202 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1127899 2817 - 0.347178
NA LJ0288 Lj965 prophage integraseSubName: Full=Lj965 prophage integrase; chromosome CDS327894 1176 - 0.317177
NA LJ1060 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS961911 441 + 0.324263
NA LJ1082 integrase/recombinase XerDRecName: Full=Tyrosine recombinase XerD; chromosome CDS986914 891 + 0.350168
NA LJ0863 excinuclease ABC subunit BRecName: Full=UvrABC system protein B; Short=Protein UvrB; AltName: Full=Excinuclease ABC subunit B; chromosome CDS764997 2016 + 0.352183
NA LJ0004 DNA gyrase subunit BRecName: Full=DNA gyrase subunit B; EC=5.99.1.3; chromosome CDS4229 1968 + 0.394309
NA LJ1492 DNA polymerase III alpha subunitRecName: Full=DNA polymerase III polC-type; Short=PolIII; EC=2.7.7.7; chromosome CDS1360658 4299 - 0.358921
NA LJ0989 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS889455 2376 + 0.344697
NA LJ1749 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1637990 1203 - 0.303408
NA LJ0236 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS269849 822 + 0.36253
NA LJ1292 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1222381 495 + 0.331313
NA LJ0002 DNA polymerase III, beta chainRecName: Full=DNA polymerase III subunit beta; EC=2.7.7.7; chromosome CDS1546 1131 + 0.340407
NA LJ0012 replicative DNA helicaseSubName: Full=Replicative DNA helicase; chromosome CDS13598 1374 + 0.374818
NA LJ1203 hypothetical proteinRecName: Full=ATP-dependent helicase/nuclease subunit A; EC=3.1.-.-; EC=3.6.4.12; AltName: Full=ATP-dependent helicase/nuclease AddA; chromosome CDS1130740 3615 - 0.333057
NA LJ1171 topoisomerase IV subunit ARecName: Full=DNA topoisomerase 4 subunit A; EC=5.99.1.3; AltName: Full=Topoisomerase IV subunit A; chromosome CDS1091587 2481 + 0.348247
NA LJ0479 DNA mismatch repair protein MutSRecName: Full=Endonuclease MutS2; EC=3.1.-.-; chromosome CDS523849 2367 + 0.365864
NA LJ1549 exonuclease VII large subunitRecName: Full=Exodeoxyribonuclease 7 large subunit; EC=3.1.11.6; AltName: Full=Exodeoxyribonuclease VII large subunit; Short=Exonuclease VII large subunit; chromosome CDS1422460 1371 - 0.350839
NA LJ1110 probable integrase/recombinase CodVRecName: Full=Tyrosine recombinase XerC; chromosome CDS1016225 924 + 0.353896
NA LJ1318 DNA primaseRecName: Full=DNA primase; EC=2.7.7.-; chromosome CDS1243920 1812 - 0.36479
NA LJ1001 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS901340 684 + 0.330409
NA LJ0307 Lj965 prophage terminase small subunitSubName: Full=Lj965 prophage terminase small subunit; chromosome CDS343363 855 + 0.367251
NA LJ0765 transposaseSubName: Full=Transposase; chromosome CDS662960 1158 + 0.339378
NA LJ1692 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1567493 246 - 0.361789
NA LJ0839 RecA proteinRecName: Full=Protein RecA; AltName: Full=Recombinase A; chromosome CDS734670 1083 + 0.392428
NA LJ1219 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1153008 465 - 0.339785
NA LJ0649 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1713728 963 - 0.354102
NA LJ0092 methylated DNA-protein cysteine methyltransferase ribonuclease-like domainSubName: Full=Methylated DNA-protein cysteine methyltransferase ribonuclease-like domain; chromosome CDS113494 336 - 0.321429
NA LJ0425 recombination protein RecRRecName: Full=Recombination protein RecR; chromosome CDS469941 600 + 0.406667
NA LJ1150 excinuclease ATPase subunitSubName: Full=Excinuclease ATPase subunit; chromosome CDS1068391 2523 + 0.370591
NA LJ1751 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1639830 807 - 0.314746
NA LJ0445 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS488764 453 + 0.333333
NA LJ1230 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1160977 630 - 0.263492
NA LJ0811 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS704851 1230 + 0.337398
NA LJ0001 chromosomal replication initiator protein DnaARecName: Full=Chromosomal replication initiator protein DnaA; chromosome CDS1 1365 + 0.3663
NA LJ1077 DNA polymerase III alpha subunitSubName: Full=DNA polymerase III alpha subunit; chromosome CDS979865 3117 + 0.351299
NA LJ1070 excinuclease ABC subunit CRecName: Full=UvrABC system protein C; Short=Protein UvrC; AltName: Full=Excinuclease ABC subunit C; chromosome CDS970341 1803 + 0.358846
NA LJ0471 DNA polymerase IVRecName: Full=DNA polymerase IV; Short=Pol IV; EC=2.7.7.7; chromosome CDS515775 1122 + 0.36631
NA LJ0252 methylated DNA-protein cysteine methyltransferaseRecName: Full=Methylated-DNA--protein-cysteine methyltransferase; EC=2.1.1.63; AltName: Full=6-O-methylguanine-DNA methyltransferase; AltName: Full=O-6-methylguanine-DNA-alkyltransferase; chromosome CDS282916 489 + 0.361963
NA LJ1599 transposaseSubName: Full=Transposase; chromosome CDS1473424 1278 + 0.322379
NA LJ1545 DNA repair protein RecNRecName: Full=DNA repair protein RecN; AltName: Full=Recombination protein N; chromosome CDS1418861 1680 - 0.33869
NA LJ1541 primosomal protein N'SubName: Full=Primosomal protein N; chromosome CDS1415060 2397 - 0.347101
NA LJ0886 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS789977 534 - 0.372659
NA LJ1040 truncated transposase chromosome CDS937890 486 - 0.327161
NA LJ0772 transposaseSubName: Full=Transposase; chromosome CDS669262 1050 + 0.382857
NA LJ1530 ATP-dependent DNA helicase RecGSubName: Full=ATP-dependent DNA helicase RecG; chromosome CDS1403323 2040 - 0.363235
NA LJ0609 exodeoxyribonuclease ASubName: Full=Exodeoxyribonuclease A; chromosome CDS1768093 786 - 0.347328
NA LJ0466 DNA mismatch repair protein MutLRecName: Full=DNA mismatch repair protein MutL; chromosome CDS510189 1893 + 0.350766
NA LJ0693 transposaseSubName: Full=Transposase; chromosome CDS583303 465 + 0.382796
NA LJ0981 ADP-ribose pyrophosphataseSubName: Full=ADP-ribose pyrophosphatase; chromosome CDS883656 564 + 0.336879
NA LJ1720 NAD-dependent DNA ligaseRecName: Full=DNA ligase; EC=6.5.1.2; AltName: Full=Polydeoxyribonucleotide synthase [NAD(+)]; chromosome CDS1603589 2007 - 0.356751
NA LJ1092 DNA-binding protein HUSubName: Full=DNA-binding protein HU; chromosome CDS995481 276 + 0.423913
NA LJ1177 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1100907 1071 + 0.322129
NA LJ1465 Lj928 prophage integraseSubName: Full=Lj928 prophage integrase; chromosome CDS1329202 1176 + 0.320578
NA LJ0473 probable RNA helicaseSubName: Full=Probable RNA helicase; chromosome CDS517883 1386 + 0.362193
NA LJ0203 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS235251 774 + 0.382429
NA LJ0372 transposaseSubName: Full=Transposase; chromosome CDS404511 1050 + 0.382857
NA LJ0949 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS846398 1296 - 0.373457
NA LJ1067 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS967749 798 - 0.309524
NA LJ1440 Lj928 prophage portal proteinSubName: Full=Lj928 prophage portal protein; chromosome CDS1314777 456 - 0.315789
NA LJ1160 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1080153 1263 + 0.361837
NA LJ0883 uracil-DNA glycosylaseRecName: Full=Uracil-DNA glycosylase; Short=UDG; EC=3.2.2.27; chromosome CDS787736 696 + 0.357759
NA LJ0642 transposaseSubName: Full=Transposase; chromosome CDS1719813 1050 - 0.382857
NA LJ0005 DNA gyrase subunit ARecName: Full=DNA gyrase subunit A; EC=5.99.1.3; chromosome CDS6207 2490 + 0.386345
NA LJ1721 ATP-dependent DNA helicase PcrASubName: Full=ATP-dependent DNA helicase PcrA; chromosome CDS1605634 2247 - 0.368936
NA LJ0064 transposaseSubName: Full=Transposase; chromosome CDS86234 1278 + 0.322379
NA LJ1193 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1118745 1125 - 0.365333
NA LJ0843 COMF operon protein 1SubName: Full=COMF operon protein 1; chromosome CDS739552 1188 + 0.330808
NA LJ0003 DNA replication and repair protein RecFRecName: Full=DNA replication and repair protein RecF; chromosome CDS3104 1125 + 0.329778
NA LJ0420 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS465795 822 + 0.311436
NA LJ0091 methylated DNA-protein cysteine methyltransferase DNA binding domainSubName: Full=Methylated DNA-protein cysteine methyltransferase DNA binding domain; chromosome CDS113298 237 - 0.362869
NA LJ0036 exodeoxyribonucleaseSubName: Full=Exodeoxyribonuclease; chromosome CDS45106 828 + 0.363527
NA LJ1270 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1198318 675 - 0.328889
NA LJ1647 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1522050 1341 - 0.344519
NA LJ1107 SMF proteinSubName: Full=SMF protein; chromosome CDS1011816 846 + 0.355792
NA LJ0007 single-strand binding proteinRecName: Full=Single-stranded DNA-binding protein; chromosome CDS9213 519 + 0.400771
NA LJ1039 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS936757 375 - 0.328
NA LJ0037 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS46005 2841 + 0.345653
NA LJ1240 DNA-damage-inducible protein JSubName: Full=DNA-damage-inducible protein J; chromosome CDS1166334 276 + 0.311594
NA LJ1726 transposaseSubName: Full=Transposase; chromosome CDS1610727 1050 + 0.382857
NA LJ0697 3-methyladenine DNA glycosylaseSubName: Full=3-methyladenine DNA glycosylase; chromosome CDS586717 567 + 0.283951
NA LJ0692 transposaseSubName: Full=Transposase; chromosome CDS581866 1338 - 0.381166
NA LJ1421 Lj928 prophage proteinSubName: Full=Lj928 prophage protein; chromosome CDS1294097 222 - 0.351351
NA LJ0322 Lj965 prophage putative minor tail proteinSubName: Full=Lj965 prophage putative minor tail protein; chromosome CDS353489 6066 + 0.381635
NA LJ0298 Lj965 prophage proteinSubName: Full=Lj965 prophage protein; chromosome CDS335237 900 + 0.316667
NA LJ0926 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS827713 441 + 0.310658
NA LJ0813 transposaseSubName: Full=Transposase; chromosome CDS707627 1278 - 0.322379
NA LJ1204 hypothetical proteinRecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B; EC=3.1.-.-; EC=3.6.4.12; AltName: Full=ATP-dependent helicase/nuclease RexB; chromosome CDS1134355 3477 - 0.329882
NA LJ0998 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS899236 549 + 0.367942
NA LJ1306 transposaseSubName: Full=Transposase; chromosome CDS1233280 1278 + 0.322379
NA LJ0033 transposaseSubName: Full=Transposase; chromosome CDS42139 1026 - 0.418129
NA LJ1055 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS954498 1737 + 0.295337
NA LJ1170 topoisomerase IV subunit BRecName: Full=DNA topoisomerase 4 subunit B; EC=5.99.1.3; AltName: Full=Topoisomerase IV subunit B; chromosome CDS1089612 1959 + 0.366003
NA LJ1548 exonuclease VII small subunitRecName: Full=Exodeoxyribonuclease 7 small subunit; EC=3.1.11.6; AltName: Full=Exodeoxyribonuclease VII small subunit; Short=Exonuclease VII small subunit; chromosome CDS1422234 246 - 0.341463
NA LJ1108 DNA topoisomerase IRecName: Full=DNA topoisomerase 1; EC=5.99.1.2; AltName: Full=DNA topoisomerase I; chromosome CDS1012727 2082 + 0.372238
NA LJ0468 Holliday junction DNA helicase RuvBRecName: Full=Holliday junction ATP-dependent DNA helicase RuvB; EC=3.6.4.12; chromosome CDS512694 1020 + 0.39902
NA LJ0270 probable RNA helicaseSubName: Full=Probable RNA helicase; chromosome CDS303542 1455 + 0.358763
NA LJ1198 probable endonuclease IIIRecName: Full=Endonuclease III; EC=4.2.99.18; AltName: Full=DNA-(apurinic or apyrimidinic site) lyase; chromosome CDS1124690 630 - 0.353968
NA LJ0864 excinuclease ABC subunit ARecName: Full=UvrABC system protein A; Short=UvrA protein; AltName: Full=Excinuclease ABC subunit A; chromosome CDS767027 2868 + 0.358089
NA LJ1850 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1980275 1863 + 0.357488
NA LJ0423 DNA polymerase III subunit gamma/tauSubName: Full=DNA polymerase III subunit gamma/tau; chromosome CDS467788 1809 + 0.368159
NA LJ1220 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1153473 822 - 0.306569
NA LJ0204 hypothetical proteinRecName: Full=Ribonuclease M5; EC=3.1.26.8; AltName: Full=RNase M5; AltName: Full=Ribosomal RNA terminal maturase M5; chromosome CDS236008 564 + 0.351064
NA LJ0961 DNA repair protein RadCSubName: Full=DNA repair protein RadC; chromosome CDS862980 612 + 0.338235
NA LJ0429 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS471861 858 + 0.356643
NA LJ0476 hypothetical proteinRecName: Full=Putative Holliday junction resolvase; EC=3.1.-.-; chromosome CDS522460 432 + 0.384259
NA LJ0277 transcription-repair coupling factorRecName: Full=Transcription-repair-coupling factor; Short=TRCF; EC=3.6.4.-; chromosome CDS310370 3498 + 0.359348
NA LJ1510 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1381480 420 - 0.314286
NA LJ1646 primosomal protein DnaISubName: Full=Primosomal protein DnaI; chromosome CDS1521136 900 - 0.347778
NA LJ0186 transposaseSubName: Full=Transposase; chromosome CDS218844 1278 - 0.322379
NA LJ1298 transposase fragmentSubName: Full=Transposase; chromosome CDS1227014 228 + 0.285088
NA LJ0465 DNA mismatch repair protein MutSRecName: Full=DNA mismatch repair protein MutS; chromosome CDS507610 2574 + 0.384227
NA LJ1509 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1380858 639 - 0.338028
NA LJ0622 transposaseSubName: Full=Transposase; chromosome CDS1745031 1050 + 0.382857
NA LJ1321 DNA repair protein RecORecName: Full=DNA repair protein RecO; AltName: Full=Recombination protein O; chromosome CDS1249032 753 - 0.335989
NA LJ1106 ribonuclease HIIRecName: Full=Ribonuclease HII; Short=RNase HII; EC=3.1.26.4; chromosome CDS1011011 753 + 0.379814
NA LJ1004 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS904260 990 + 0.307071
NA LJ0450 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS492358 759 + 0.374177
NA LJ1475 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1340756 2271 - 0.341259
NA LJ1199 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1125329 645 - 0.333333
NA LJ1676 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1549304 1224 - 0.30719
NA LJ0911 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS810585 1002 + 0.330339
NA LJ1056 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS956224 1596 + 0.298246
NA LJ0982 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS884212 291 + 0.309278
NA LJ1651 DNA polymerase IRecName: Full=DNA polymerase; EC=2.7.7.7; chromosome CDS1525310 2661 - 0.337091
ISLjo4 chromosome repeat_region662960 1158 + 0.339378