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# Rickettsia typhi str. Wilmington, Wilmington

>RT0833 DNA polymerase, bacteriophage-type
MNDIFKWLNAIGVEYYCYEHTPQKIPNNTELTEKQQVELMHTTEAACNNN
VHDNITLSRSLADKANNIAELRESLLNFNGCELKKFATNTVFGDGNPQAK
IMLIGEAPGNTEDLKGIPFCGESGNLLDNMLYAIGISRKNNFYITNMVFW
RPPANRQPTLEEVDICRPFVEKHIALINPKLLILVGSTAATSLLGKNSCI
TKIRQEYYFYTNKYISTPIQTTAIFHPAYLLRQPMQKRTSWYDLLKIKEY
LVNNRVIA
>RT0321 possible Holliday junction resolvase
MIIKNLQEFYRLLIPNEPLIAIDYGSKKIGVALSDQALAIAMPLNTITEL
NQRVIITSLLNIIEKYQVCGIVIGLPIDMSGGVTKQTNIVMKFADKLKQS
VSLPIYLQDERLTTKSANNFLKSFGIKRKDRNNNDDAVAASMILEIVLNA
IKRFNL
>RT0824 single-strand binding protein
MAGSLNKVILIGNVGRDPEIRTTGEGKKIINLSLATTETWKDRITSERKE
RTEWHRVVIFSEGLVSIVERYVTKGSKLYIEGSLQTRKWNDNSGQEKYTT
EVVLQNFNSQLILLDNKNSNNHTQGSGHNEYKYPEIKNHSFDHSDLDDEI
PF
>RT0533 probable methylase
MLKIISGKYKNQIIPTAKNIKYRPSTARLKEAIFSILTSGEFIDKKLFNE
NTQILDLFAGSGSLAFESLSRGAGFATLIDIDTSALKIAAGFAKSLNIEN
NVHFININALNLQKTTRYLTKQTYRNEFINTATSYIGISEHKNTNMAYKL
RLKSQFWDMSNKAFDLVFIDPPYNKDIVPKVMKLLIKNNWLKNGTIIVIE
MSKTDDYALDKNIEIIRTKLYGKSKLLVLRYSDHPS
>RT0269 rickettsial conserved hypothetical protein
MIKLLKIIQMSDYKDDAQIKNTLGAIKTQLTATANPSELARLASATADLA
LSTNNSELLEQIKGVQAAIAKKEETAEHNISSKIASENFEKQQINNEVLH
TQHESEAREARLKGNYIQYDTVEEALYSLLQKEADLIKKANNIPESLTHD
DLRKLKGENLTPEEQEDERKKLEYLSILGSIIDDTKKSNEHYDKRANEID
EQLNNTIRNEEFRKNLEQEKKKIEKKKAQTNEALNKKLKPIYKQMDEERE
ELFKLAETLPQYAKVNIDKHTKLYAKQYQTKIENDPNYKELKKLQEIANK
IEYRKKSKTNEIHITNNPNPTVVENLLEEKIDEISSKEIREAINVIKQEV
NVNTKPCTTPLTPSRSPSMQRLANKTKGIE
>RT0733 rickettsial conserved hypothetical protein
MANIKHKLLIFLSFFCFLYLASCQIPKEGEIIIPKKGQKEIEIAILMPNQ
GPDGVIGKQYKDLIKMGLNDAVKSYIHVTSYDGSDEQNVLAAMDKIVTRK
TKIILGPLYSNFTSLITEKAKANDIIIITMSNNPALAEDKLFVFGHAPLK
QLIRIINYYSENHKDFMALLPQGKYSQTISQVMQNILIQKNSSLSHTEFY
EDNPESIAKAVRNISDNTDIINERSDTIKPVIYLSDDPKNLNLLAESIHK
YNLDKKAILIGDNRIDVDYSENIDISFTGTLNLFNSNIQDRAKDLGINHI
GFMHLIAYDLGHMTANYIGNEFVSEIFLNRMHSRQPYLGLSGNIHFIDGV
AQRQYDIIRKENGVYSTVSEH
>RT0352 rickettsial conserved hypothetical protein
MATKNKKEIVNNETKNLANLIIKEIGKENFDFGILKKMQQAFSTASKQKQ
REAFINILDTKLNKEQLHQLNQTIMQNADELMPDNDPNFVCRTTNNKVFQ
EILLLEAKRSGMQARFSDTGSLQSLDIKDITPEILDHYRVLQEKFYSKRN
SKDSIDSRIAQSINFLLYAPLFRESDIYKKLGLKSAEIEREIQDPNGKYV
KQLLDAKIGSYTHLYMEVKENNVHAGKEIEIASIIEKVMLKFEQDKKISL
EGKRRDEITKYLSKSLEGASDYVLTFKKNDLVDVIYQGLDKGQTLWSKLV
NHIGIKSYSISKENIKVVAQIINNKIKSYHTPLKIEVHDKLKQISKELNR
LNNPVLPSEAQKVQVKSKKPPIAPKPGHLKKRDHRLC
>RT0135 rickettsial conserved hypothetical protein
MSKAKTKQELLLQQELFNVLKTHDIEAHAKISRICERIAESVIALADQQS
HTTESSYINYINQAALNTKDLAKVTTTIKNFFPGDHNKKLREIIDTPLLQ
NLVIAGSIERKIGLNDTLYTPDYRKLEEIIDPNDTKKVIDAMLRDKGVAQ
QDEFEKKGKKTTGISAGYIANDSAGNTFILKHFYKTHAACEKIQDPIEQS
HAIDDRRDGVQELIGSTMYQFLLHDRAPKEGLVKADAQHPDSLYVRSKFF
DNAVTLTEFCGLSGQTRVRVNDKNLKKLEGFEKAIAACHMLGDGDYHAGN
LMVQNGKTITKIDHGRSFLEFHQDFGSMVQLTAEMFTHPNVCYSDAIKAG
NLSFNIDKYSEALNQMISQFDVQRMEAIVDQKLDELKKAGFDPDNIPLYI
NINNFDDLKQYYKSSIKQNFINMQEIAKGAEIVKKFSNVLPEFKNGGWLE
AFANSPVKEPLLYAIKNKITIEGKDAQEWAYENNYQIKTAIGLTKEVIKE
RQWRKDFEGKWQEKEIEVQRDKVEVQLSDPLKSMRIQDKFTAKKFESLII
NFTKHTTTKNVTDEEVEKFYDNIMQVLKKENYLNEQDIETIKQDLKYHDN
IENTTHLLNAKDLKLNSKDTIYYKIGNFCEKIGLRSVANHFIKKIAPENL
NKIYNTEKVIAESIKIGNILKDNKQEGLQTKRLETVKGIVVSQLQAKQGK
QQQGKHY
>RT0391 conserved hypothetical protein
MIARYSFLQNFAEYIIDKLKKGIEVQIILPNNLLCLKLKQILIDKYKIKL
PIIIPFNAIFFKKNESDYISKIEELFILSSIITEYKELPFNLEESLKSAE
ILRKLFNDLIINNIDIKLIEVYNNSNYWQKIYKFLEICFLKWKKAISLTQ
KYTKTIHEFNILQEEIIKIKKRDKRIILAGIFKPNVFFKKFEEELKDYII
HYNPSYNYISNNISYSEPNNIYEEAKQIAYICELNKDKHIAIVTNDNKLK
KVYCNFLDQKYSDLLGNDLRRTNIGELLTAIIKIICNNFDLKLLFLLLKN
PLINCHSVQKLELMLSNQNRFISSPKYLLQLQFENEELKEYCANLIDILF
TNNPHNITGILTLTQEIAEKLLPTIWEKEEGEVLIEFLTNLISYSKHINL
MNKKDFPKIFSFLLSNIKHYKNTDSSSIIIGQPEDLVLCRFDLIILPHFN
NEHWSPNAKPHPLLSKKALQILNIDYNDAITTMLYTDYFNLLLQNKQIVI
LNAKKYNGKLSTSCNLFLRLQLKHVIPWFDPKLLTPATNSLDIKSQDDHK
LTTISHSFPSVLSVTDIESLIRNPYGFYAKKILGLYKKDNIWEEPKISDF
GNFIHKVLEKYSKNYDKQYVCLNLLDKQAALINIGNHILYSTILPAYTKK
IWQIKLTAFSKTFILFDIERRKNCKEIYFEIKGELRLNIAGQNIKIIGIA
DRIEVSKSNDITILDYKTGTIPTKKEIEFGLSPQLIIECLMLLENGFNIK
SFSNLETSQLSNIHIGRDTVICSRAQVVNPSYLKNYKSSCINKKLTIAYV
RITSTEPYIQTTEIDLNIETLHKHKAGLIRLLEYYVTNKSFSYDFNLSNY
NDYRHLTRCYYINS
>RT0677 conserved hypothetical protein
MLIDSHCHLNLLTNFSSCDSIMISSKNIKTTNASCLFDTEIYDAVFLDSC
IQRALENNVQYIQTICTKLEDLPCILKIAEQYKNVFASVGVHPCEVNEKK
RLVTALEIIALTNYKKIISIGETGLDYYHKPYNKKLQRDSFIAHIHASSA
TNLPIIVHTREADEDTIDILTSEMHNSNFPGLIHCFTSSKNLAAKMLDIG
LYISVSGIITFKNATDLQEIVKYIPLDRLLIETDSPYLAPTPMRGKQNEP
AFVRYVAEKVAELKNITSQEVASVTTHNFKRLFSKFAKHASLI
>RT0496 rickettsial conserved hypothetical protein
MAATNNKNYQKVVEKVLSSSKANKALKSAIKDLSSSNSISLRTILLGAKF
ILTHPVNTYNLVKLAKSSNIYLGSEFQKSLLENSPIWEFLKKHSDDLPKI
GRILAKAGFREFQDKSALDEEGLKILKECFKNEKVLNKLQDIAVELKQEL
TDWNKVTSNILDMLVTDKNFQKFFNAKSKDITHYIRTGVTEILPSDYIKS
FDDILQKPEKKKLLKIFNTHPDVKQELVNNINNPNILKKFNKLFYEQEII
LSSFLKEVKAQSKPFLQEYFESYKIDLKILDIIPTLLNKIPEIKEIFDTL
NDPNQGVMISLEKALAMVAGDDQLKNFFANNKTILPNIALGIIENTPSVQ
NITKEYNFDKQMLIIVGEVMSKPEIAYEIITDLNKGDYMSLTGNIISIIN
DPSFKLKDILVEQSKKGLFDNLINGVLAQDEKNSQIIKQQLINYGMEASD
VTKLTRIMPILLDKPESLKNVFRDFIKGNYTQMTKELIVLTKDNPEIKEY
LNNNRTIFANILDKTLSDIPGINNLDKQELYNVLPSMLNYPGELVKIIEE
VEKSNYHGAISAIYDLAQKTNYFEGQLPNIIKAGFNSGFNYATEKVKDIF
SSSQDFKDKAIDEITIRTNLDKIRNRKFNLEGAILSGNLSNIDFSGVSLK
NADLTQVTSLRDCNFKNTNLVDAKLPDNLIIFTDTYNLDKTIPTLAPKLI
KAQQAKLVDKAIDKVFVQIKAEDKRNLVSKKEFVQQVKILLEENQIVKDY
IIDKLNSLPMNMVTNLETPKINQYKHITNHVNSPFQILNPLYENIANQQD
IKSNLFANILSEKISKKLFDKGDNRGEDFYLINQMLKSIVAEYSKPNQNN
IDNFLEHQNLEKLASNIASTFYSKSKYTLLGTITSGIYLPKEIFNEQLKD
NLKNEFKKINTSDVLKEAKSIVSNLDSKVHIVDNKNKSHTYKSVLTKNQK
IHR
>RT0223 rickettsial conserved hypothetical protein
MTDILDEVLSDQNEEKRLIFFKKLVLIIIIISIVAITIMVIINNNKDNRI
KNNKKNGDILVKTIGLDTTKANNELAFNTLENLVTSSNTKIKEIAALEQV
ALKISEKKYLEAKELLNKIIENKEYSEISTSYARISWCCIVLDDQNLDIQ
DKEKLQKYLDYFDDEKKPFWATATIIKSILDIKHNMKTQAEKNLKNLLAS
NNVSDLLKDQAKALLVNLSK
>RT0179 conserved hypothetical protein
MKFYFSQIGKLFELIAAGKIKALLLYGPDKGYIEKICTRLVKNLNMLLSS
IEYEDLNILSFEILLNSHNFFGQKELIKIRSIGNSLDKNLKTILSSDYIN
FPVFIGEDMNSSGSVKKFFETEEYLAAVACYHDDEAKIERIILAKLAKTN
KVISKEAITYLKTHLKGDHALICSEINKLIYFVHDVHEITLNHVLEVISS
EITANGSNLAIYFSKKDYSNFLQELDILKKQNINEVLIIRALIRHYLNLY
IVLSKVKNGECLELAIKSLSPPIFYHNINDFINIAHALSLTECLKTLKLL
QQAEVDYKLNPASFDLFQSIL
>RT0536 possible RecO-like recombinational DNA repair protein
MNIKDIGVIISKKPLKENTFIIRVFTKNHGLYSGVIKASSKKNKFIYQEG
NIVDFLWQARLHEHIGIAKCELIKSYTGYFIINKAKLYAFNSVKFLIQEL
FHEREEHSIFFAFLINYLDNLSKNFCFRDYINFELNLLAETGYKIDLTKC
CVSHVTTDLTYVSPKSARALSYKVGKPYRDKLLILPKFLLSEDSKITLEE
KKQALTLTNYFFNRYLFHNNRQVEARKEFIEYITNI
>RT0844 rickettsial conserved hypothetical protein
MIKINLFMKNIFDAIKLYFITILKIFSFKREKIVVLLGNKGVFLSTFLNN
KLLDQLFIPNHGQVDLTPYKNFLSKFPKSDVYCLLDGSECKARYDHIPIL
QSIVKIDPIEQFIEGYFNKEDIISHCVYEISTKPSEIWSTLIMSCPFEAP
LSDIISCIIDKRSLNLKGIYFLTLELKVIINKIVQNIQNDKYNDYFQVCV
YVSQTSGIKFIIKHKNNIITIRNLDYPFDKTTNYVQGIIEQEIHDFFILF
KNYISNLDQRVCVILIVDDELKSLLESTNFEDRNVIFIPVDNILNKQTLE
KERFIDANISRLFLEYKSFPAYNNNLKLIKKLVTIKDLTFKLYTALLIIL
LSVVCIIKYNTKQNYKDINSINEKYYATNQEYDSIKYKYPYIKNTTSLAD
LYVIEKLLETPVPLPFDLLEMLIINLNPAFKLEEIKWELTNIDNILLISK
RQLIIKLILKYHTNNLSIDESLKLLDDHMQNVKNKLSHFQIDYVIYKDKI
LDIFGKLVIPLSVNVVDYKT
>RT0842 rickettsial conserved hypothetical protein
MNNAIVLNNVNTNLFKKDIVNNFVNNLTESTCSTIANMLAIDYTLRLNSK
PEAEKYIKTCVARLKSYLGMRVINDDNFSVALELFAIMIYEYENEQNKDN
ILEQSQNIIATNLVEVYFADEKITSAEKEKITNIFKTLLKEKNFDKIINY
AESHKKLFKMSVMYAMKKYNDIDQSTICIKQEFSKILDMSLAFTQKCNIF
KQTTGKIVGAVCALLVGAISVATAGAAFSIIVVPTSIFAIRYAPALGEKI
GELILNNDNVIKLEQSNIEKFMKTLQNNKENLLSQEKRKKIKNNITVVTP
TINSKLIKKVVNNKKNIDRIY
>RT0011 conserved hypothetical protein
MKRILSFIFIILFFNSSYTAEKAAVITDYKSVFLPVITKNKKIKIAIRSY
LKNKESYFVLVDPDSFKTEIVLQELVILPVNKIEKENMLIKLNKTAYIKA
LNKYNFIDQSLRSFKQDEFSNKFTKNVIVHEHKPNSKNSYLSTFMNSTVQ
QNYGATSSMYKVKGQFLTIDMCPSSKNFEEDFFKKLVELSTKLKKTIPIT
ICVSGLWINKHTEEFLWLLKQQENGYLQITWVNHSFSHPYFKDKPLENNF
LLSNKEDFENEVLEVGKILVSYNIAPSPFFRFPGLVSDQILIAKLKDFGF
IPLGSNAWLAKGEKVQDGSFILVHGNSNEKAGIDLIMPMLSELKLLPIEK
AFLPTNL
>RT0696 rickettsial conserved hypothetical protein
MSEPIIFTLLFGNKDQILDKINNQKALNKLHIIPLQVNKESNISDKERIF
SEILEKSCKECKIPIFNIQISNNNVKPIFGTQDLINAQNLNIKTTITFDK
YNALPQNSALKSYWKQIIEKVDHVFFTNEADQNLSIADGIVPKDKTTTIT
DISLVTSVFNNLVHETNHMLSGTIPKKAKLDKLIKIAKNQDDRVIIETWP
LSVDEATNLITAKFGITSEDHIYSLKLEIHEILKDPNNAAENFKKYVSQI
SRQFNKDLGKAEKNYIDFHFNTQKVINDNNKDIQVEQTISYAHPKEKQPK
SQGFFAKIFNYFKDKK
>RT0286 rickettsial conserved hypothetical protein
MFRKFLFIPLLIVTSLVKAEIIEVDSLSKITQDFKVNYNKNYLPQDLLVV
TVLDKFLFKPFGIPIGEYIDQRRYLELAPLFSQINKNSKIIYIAQLILTN
DSYKKELQESDFPSFVNEISNSQIPIIAVNNGFTGNFNNIPKFEIWFADY
LKKNFYIDFSKSFPNNNYIIFNNLDSFANTYPVFYKGILTSNNISVAQVI
LNFLIQINFIPKCFILISSNRELIRSMEFQLNNHSSNILFIGYHYNNKTI
SAHKDIVYYTKMINDLIPQINKLKRNNPPLKNNNAKSKNSYETHK
>RT0552 rickettsial conserved hypothetical protein
MSMNEQDDQIIKELEARLAALKGIPPSIEELEERLAKLQDTSYIYKKSGN
EVDNLIEQMHSELKLEQKSKNLNDQKDQVIRDRLDKLRENSSVTETLIDF
SFNDTKSIITDTISSQADIVSAYANRSTELDDKKVLLHLANNLTEARDII
MDTPSISKAYDTKIFDVIASGLGRIYEGIKTVATPAVNIIKEVGNILINS
IRSLSQKSSEKQIEESKKELKKLYKSYTDLKGVDEKVKKEFLKKHYQQID
KLQTPKEIFLETAKITKSISIAGKQKINNLKPQQVINRMQDKNPSGLLNK
SSFTPSNTPTNKVKSSKINQR
>RT0719 ATP-dependent helicase/nuclease
MSNLQQQASNPNTSVWVSASAGTGKTKILIDRFLRLLITGTEPTNILCLT
FTNAAAIEMQARINSKLKHLALCDTEKLANELFLMSGNKPLAQEIENTKT
LYYKLLNSHEPLNIYTIHAFCQKILKTFPLEAGITPEFKILEETKLQDIF
LKIKNEIYLSDEHNKLIQILLNRFHEMTLQDIFTEIIEQKIKFKKLFINK
QIPKQISNKRFALKQLNNIYAKVESLFTAYDLEIEPKKLFFTKDGEKRKR
LLSKELTKKYPQLLIELEKITFKIHHLDELRRIEELEYHTNLLTKLAYII
LKKYDSYKEENNLLDYDDLIYYTEKLLNNKTTHEWLFHKLENEINHILID
EAQDTSTTQWNIITTLITKFNAAEKPNNSIFIVGDEKQSIFRFQGANLHN
FNLINEQLKINLTSTNKKFKNITLEYSYRSCPEILQFTHNVLNNIKYNYP
NLFLADNPLISSLRIHQGSVTVWPLVTNNKQKEFFWILPEDDKNAKSAAD
LLIEKIVNFIKEKIESKKILPSTASQISEKDFMILVRKRDKFSQNLIKEL
NKAKLKVEISDRINLKENLPILDLIAAAKFVLLPDDDLNLACLLKSPIIG
ISEQKLYTLLVNKNDHTLWEVLSTHTDIYNKLDSIIKIYKIASAEDFFDL
VVNRLNLRAIYGNNNDDMINELLTLSKDYANAIDNSLQGFIAWFENNEIY
IKRDMEHSDKIRVMTVHGSKGLEAPFVILCDSTTLPIRNNKFIWDDNGQM
FFSLNAEDTPAFLQELKESEKLKDLQEYMRLLYVAMTRAQDQLIICGFSN
KDNVPENCWHKIATQTFNQLLNY
>RT0623 rickettsial conserved hypothetical protein
MSNTSKLENHYNKLLKDIMLKTLEQNKTVETYLIQQDFSSALDELQQINE
KLAEYCKVFTLLEIIKTELDEEDKVYN
>RT0099 rickettsial conserved hypothetical protein
MTNNQFSEETKKIADQIKDSLMGISDNLILESKEVEEIFEELSKNEEFDY
EIERILAILNEQTMDLTQLQSRIILLIRKYLDKTKNLKFKMDEKLINKNV
AEVSNYLMHQHSKIVRDANKNLVKPKDKLQSLTKQARMDLKRLIKSFAVY
QVYMFMNPKRIAGETKLMNFAYNMIKGGMKLAKKYEGGKEKDIKSYSPRL
IKKLEKAHAGFKKNNSISI
>RT0215 rickettsial conserved hypothetical protein
MYIINFSSFHRFNIAQQATLKRLLIKLGVFTKSLKKNVTDLENNLFYILQ
NSLDELLHTENIDTEKIITLFNITLQESLTILSKELERTYQAHLETRDIF
LFNVIIIEKCLNVLAQVLKFQKELDTLYPRASQKIINALESIIVMIIASQ
IPVLGIFIQISETLKKVNNLIDYKKLLPKITRLHNEITEIIRDVTYNKQL
KNCFEKATTVATILEISKESARKIIEIANKNPNNRVSLENIVKAAKTIPK
TKDEVEEKIAKLKSNIESAIPKNINIDKLNSINNTISYNINGAKTELLKI
LDPEASFGDKIESLCKAAKKATTITSDIKKILGVVPGGKQLATVISLAIK
SNLLPPQVFAIIKLAPDITKLVNIGKAVIIMLSKTHNLTQQHGRANSV
>RT0622 conserved hypothetical protein
MQQYIFRFTTSNKYHPDEFIVSSSNAQAYNIIKNWQCCFGVNPYKFTLLI
KGPSSSGKTYLTKIWQNLSNAYIIKDIFLNEEILEKNNTFIIEDIESWQE
PALLHIFNIINEKQKYLLLTSSDKNDNFTLPDLSSRIKSVLSILLNSPDD
ELIKILIFKHFSISSVTISRQIIDLLLVNLPREYSKIIEILENINYFALI
SKRKITISLVKEVLNNYKNKI
>RT0589 dnaA, chromosomal replication initiator protein DnaA
MSTNQIPLTDQGDNYVNVWSYVAQDLYNHYGETLYNSWFSKVNFIESSLN
TVILCAPTNFIRDWIKSKYAMVILQLFQHYNNAIKSIEIITKEVPGTTQT
VIELPTKTFSNISNSALNSENTISTLDLRFTFDNFVVGAPNELAYAAARA
VAESSGAVFESNPLFLYGGVGLGKTHLMHAIGWYIKQNNPSRKVIYMSAE
KFMYQFVKALRNKEVILFKEKFRSVDVLMIDDIQFICGKDSTQEEFFHTF
NTLIDNNRQMVISCDRSPSDLDNIEDRIKSRLGWGLVADVHSTTYELRLG
ILESKIEQMNVKIPKDVINFLASKIVSNVRELEGALNKVIAHSNFTLKAI
TLENTQNILRDLLRSNERIITVEDIQKKVANRYNIKLSDMYSSRRLREVA
RPRQIAMYLSKILTPKSLADIGKKFGKKDHTTVMHAIKKVEELLENDIEL
REEINLLMKILQN
>RT0531 dnaB, replicative DNA helicase
MVRNKINNNINIITNNDDNLSIPRVLPSNIQAEQMLLGAIITNNELLSYV
SEFLRNEHFFEPIHQKIYDAIEKIIEKGLIATPITLRSMLTQDALFQEIE
GVEYLAKLITMSMMVINPIDYGKIIYDLAIKRNLINIGEEVVNNAYNASL
AVAAKEQIEHAEAKLYDLAREGLNEKSFTQVGISIAESLASINKAMKNND
HVIGISTGLLDLDNKLFGFHNSDLIILAGRPSMGKTAFAINLALNTCNNM
RLKNIRDNQEIKSVGFFSLEMSSEQLTTRLLSLCAEIDSTSLRTGMLSEE
KYNRLRKEANTLSELQFFIDDTPALSISAIRTRARRMKRKHNLGILFIDY
LQLIRGVSKSENRVNEISEITQGLKAIAKELNIPVIALSQLSRAVELRED
KKPMLSDLRESGTIEQDADIVMFIYREEYYLTRKEPAAGDAKHAEWLDKL
NKVYNIADIIIAKHRNGPVGNISLYYDSQFSKFGNLEKRTFNSILNT
>RT0765 dnaE, DNA-directed DNA polymerase III alpha subunit
MQSEFIHLRTQSSYSFLESALTIEKVVELALLHKMPALCLSDRGNLFGSL
EFALYAVKKKLQPIHGVILNIQYDINVFAQILLIAKDETGYKNLLKLSSL
TFTKNDRKICDHINFEDLIKYQEGLIALCCYTDGIVGKCLLARKQEHAIM
FARRLQAILGDRFYFEIMRHDLPEEQFIENSYIQIASELSIPIVATNKVL
FSEKSMHYAHDVLLCISEGVTKEYPDRKTVSENCYFKSPAEMKKLFSDLP
NAIQNTVNLRERCYFAAHPNPPMLPNFSTQDISETYLIRKYAKEGLLARL
VTKFKAENISREHQEKLKTEYFTRLNYELDIICNMNFAGYFLIVSDFIKW
SKKHGILVGPGRGSGAGSVVAWSLLITDLDPIKFGLLFERFLNPERISMP
DFDIDFCQERREEVINYVCSKYGNNRVGQIITFGKMQAKAVIKDVARVLS
LPYKCADYLTELVPFSAVNPVSLEQAIREVPELANAAKGKGLYNLEGDAE
LIKLVLDTSLILEGLHRHSSTHAAGIVIAGTDLVDIVPVYKDANSDMLIV
GYSMKYSEIAGLIKFDFLGLQTLTVITNCKKLLKEQGIEIDFDDMTFDDN
KTYQMLCKGKGVGVFQFESIGMKDALRRLKPDSIHDLIALGALYRPGPME
NIPTYIACKHKLQQPDYLHKLLKPILEETYGVVIYQEQVQRIAQVLAGYT
LGAADLLRRAMGKKIKKEMEEQEEIFVKGAIANNISQSQAKSIFATVAKF
AGYGFNKAHAAAYGVISYQTAYLKANYPAEFLVACLNLELNNHDKINLFL
QEAKDNGIKIIAPNINISEGYFSVKSSDTVITHNTKPLIPRLNNEIDIKD
TAVKSLYYKDESTIIFALGAIKGVTPNFGKLVTDERKARGAFKSITDFIE
RLPPKSINSKLLENLIKAGCFDELHDNRLQLFLSVPKLIAYSTSYHQEQE
SNQFSLIKVSSLSPTILVSSNYADKNTLAFYEFESMGLFISNHPLTEYQE
IFSRLNILNTRDLYNKLPNGTNQVTLAGVIQKKDSRMSARGRFVTLVLSD
PENIFELTIFSEEVLKDYVHLLDVKSLVVVNCDIVKDEGGIKLTAKSFLS
IEDAINNRQFELQLYPQNYAELEQIITLLVSRTGHGYQSNAKATIYLQSK
DVKHFVAKITLSETFFLQVQDFEILSQYIR
>RT0848 dnaG, DNA primase
MRVTQEFYELLRNRINISDVVRQKLALTRKSSNYVGLCPFHQEKTPSFTV
SDSKRFFYCFGCKASGDVIKFTSNISGLSYNESAIKLANDYGIEIPKLTV
KQKEFYEESDNILNILELANKFFRTQLTPEILNYLNQRNITETTIKEFSI
GFSPRNNKFAKFFLDKKIDITTLGQAGLIGKRKNGEIYNLFSNRITIPIR
NIYNKIVGFGARVLGNGLPKYLNSYETIVFQKNDTLYGEHKAISSSYKKN
RSILVEGYFDVIALHQAGFSEVVASLGTSVTENHLHKLWRACDEIILCLD
GDNAGIKASIRTINLALPLVNSEKKISFIRLPSGLDPDDVVNKNGADFFA
KLIDKRISLSEMIWYIEYSGKNFKTAEEKANLEKNLKDYCNKISDSNLKA
SYYRFFKDQIWQNLVIKQKKIITQNFNSSLIASSHCYSELEMLEHAFCAL
LIKFPIMLAEKDIRDFILNLNFNNKSLEEFRNWYLNEIIDNKVEESEITA
IVEKTSFFDIFLLLSKADNLFLDISFNKNNIRLDLLWQWLYKKYYLINLQ
QEYAISINGNHDFEKVLLYKKEILKIVNELQVLNESFINQTIT
>RT0405 dnaN, DNA-directed DNA polymerase III beta subunit
MLKLIVETKTLVQSLGFARSVVEKRNVIPEYANIKLSAKDGNLELSSTNM
DLYLSQKIAVQVLSEGEITVSTQTLSDIVRKLPDSELTLTELDIMKLEIK
GQNCQFNLFTLPVSSFPAMDSIKPEVSFKISCADFAKIIESTKFSISLDE
TRYNLNGIYLHIKDKEFFAASTDGHRLSISWITLEEKIKNFGVILPQKSA
EEILKIVKDLKNIHEDIEILLSSNKIKFICNENTILLSKLIDGTFPDYSA
FIPKSSISKLVINRKIFADSIERIAIITVEKFRAIKLSLSRKTLEISAVG
EARGNAKEIITASQDKESFYEYNCDESLVIGFNPQYLEDVLKAVKSNLVE
LYFSDISASAPVLIKFPQNPKDIFVIMPVKV
>RT0718 dnaQ, DNA-directed DNA polymerase III epsilon subunit
MSSLREIILDTETTGLDPQQGHRIIEIGAIEMVNKVLTGKHFHCYINPER
DMPFEAYKIHGISGEFLKDKPLFHTIANDFLKFIADSTLIIHNAPFDIKF
LNHELSLLKRTEIKFLELTNTIDTLVMARSMFPGARYSLDALCKRFKVDN
SGRQLHGALKDAALLAEVYVALTGGRQSTFKMIDKPNEINNLTVKCIEVQ
KIKRSIVVKPTKEELQKHKEFIDKILIQA
>RT0855 dnaX, DNA-directed DNA polymerase III gamma subunit
MLENSSNQYIPFARKYRPNNFTELQGQEVLVKILSYTILNDRLVGGYLLT
GIRGVGKTTSARIIAKAVNCSALITENMTIKTCEKCTNCVSFNNHNHPDI
IEIDAASKTSIDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALL
KTLEEPPPHVIFIFATTEVQKVPSTIISRCQRYDLRRLSFEEIFKLLKYI
TKQENLIADIEALRIIAHKSEGSARDAVSILDQAASMSAKSDNIISSQII
NQMLGLVDASFILEFIEKIISKETEKAINLINKLYYRFSVNLETFIQSVA
DFIAYLNKVKILPNYSLPIYESFNYRTKSILAKISLAHLSILWQIYNKGV
TEIKISYNQLIETEMLVIKSIYSTSLPLLNDSNANIMNADNSGIKKNLKF
>RT0856 dnaX, DNA-directed DNA polymerase III tau subunit
MLENSSNQYIPFARKYRPNNFTELQGQEVLVKILSYTILNDRLVGGYLLT
GIRGVGKTTSARIIAKAVNCSALITENMTIKTCEKCTNCVSFNNHNHPDI
IEIDAASKTSIDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALL
KTLEEPPPHVIFIFATTEVQKVPSTIISRCQRYDLRRLSFEEIFKLLKYI
TKQENLIADIEALRIIAHKSEGSARDAVSILDQAASMSAKSDNIISSQII
NQMLGLVDASFILEFIEKIISKETEKAINLINKLYYRFSVNLETFIQSVA
DFIAYLNKVKILPNYSLPIYESFNYRTKSILAKISLAHLSILWQIYNKGV
TEIKISYNQLIETEMLVIKSIYSTSLPLLNDSNANIMNADNSGIKKNEIL
DFLEYLYKNNEIDIYYFLLNHTELKKLSDNRLEFCSLKVTNKIKKQIEDL
LTAFTKEKPEFIVIKEQNKQTLKGQLINKIETSNDFSLIKKHFPNVKITD
ILLKIKG
>RT0196 gyrA, DNA topoisomerase II subunit A (DNA gyrase subunit A)
MTDKYSSNLVPVNIEDEMKASYLDYAMSVIVSRAIPDVRDGLKPVHRRII
YSMYEAGNHASKPYRKSARIVGDVMGKYHPHGDSAIYDSLVRMTQDFSLR
LPLVDGQGNFGSMDGDAAAAMRYTESRMSKVAHKLVEDIDKGTVSFNINY
DGSEEEPSVLPAMFPNLLVNGSGGIAVGMATNIPPHNLGEIIDACCLYID
NNDIEILDLLEVVKGPDFPTGSMILGISGIRSAYLTGRGSIIMRGKAEIE
NIGNSRQAIIITEIPYMVNKARLVEKIAEMVKEKRIEGISDLRDESNKNG
VRIFIELKKDVVAEVVLNQIYACTQLQTNFGVIMLALKDGLPKVMNLKEV
IAAFVSFREVVITNRTIYLLNKARDRAHILLGLAIAISNIDEIIYIIKAS
NDTNLAKQELMDRQWEVLDILPLIKLVDDKVMLNERGKLSFTEVQAKAIL
EMKLQRLTAMEKNKLEQDLKHLATEIAEYLNILDSRTRLLEILKEELIKV
KEEFAVPRLTAIEFGEFDQDIEDLIQREEMVVTVTLGGYIKRVPLSSYRS
QKRGGKGRSGLSMRDEDITMQVFVGSTHTPMLFFSNIGKVYSLKLYKLPL
SNPQGKGRPMVNILPLQENEHITNIMPLPENQDEWDHLNIMFATAKGNIR
RSDLLDFKKIQLNGKIAIRLDEDDKLIDVKPCKEDEHILLATKAGKALRF
PVESLRIIKSRISDGVRGMKLAKEDSVISMTVLKGINSTKEDRDAYLTVP
WEKRLKIAKGEEFNLEALGVHLNADSILEMANSEEFILTVTENGFGKRSS
AYGYRITDRGGSGIINMDINDKTGLVVGVMPVKMDDELMLITNSGKLIRC
KLESVRITGRNTSGVILFKLDDDEKVVSVSLIAETSESGEDSELVEDGLE
SAENM
>RT0569 gyrB, DNA topoisomerase II subunit B (DNA gyrase subunit B)
MSGIEEKCNESSYSADSIKVLKGLEAVRKRPGMYIGDVGDGSGLHHMIYE
VVDNSIDEALAGYCDLIRVTLNKNGSVTVSDNGRGIPVEIHEEEGISAAE
VIMTQLHAGGKFDQHSYKISGGLHGVGVSVVNALSEWLELRIWRNNKEYF
IRFNNGITEAPLSIVKENIDKKGTEVTFFPSVGIFTNIEFDFVTIEHRLR
ELAFLNSGVKILLIDNRFEEVKKVEFFYTGGIEAYVQYIDRAKHAIHPCI
VVNTEHVESGISLELAIHWNDSYHENILCFTNNIRQRDGGTHLSAFKSAI
TRVITSYLDTTGLNKKTKHDFSGEDTREGICCVLSVKVPDPKFSSQTKDK
LVSSEVRPVVENAVYTKVLEWFEEHPIEAKAIIAKIMEAANAREAARKAR
ELTRRKSALEVSNLPGKLADCHAKDPAISELFIVEGDSAGGTAKQGRDSK
IQAILPLRGKILNVERARFDKMLSSEQIGTLITALGISVEREFSLEKLRY
HKVIIMTDADVDGSHIRTLLLTFFYRHMPELINKGYLYIAQPPLYKVKSG
ASELYLKNEQALQNYLIKSTINDTKLILDGQEQLIGYNLEDLINKVVQFN
CLLDRASKKFNRSITEILAINDLFNKKIFEPESGSRLQKALDVLNNLEES
PDKTNLQVLKHENRIEFFHFSRGLKNTKILLKEQLELFEFVEISQFALSI
FDIFSKRLKLIVKGKEFDVVTPSQLLNTIIECGKKGITIQRFKGLGEMNS
DQLWDTTLDPTKRTLLQVRVSEVDEAEGIFSTLMGDVVEPRRLFIQANAL
NVMNLDI
>RT0163 holB, DNA-directed DNA polymerase III delta prime subunit
MTILKPLIIELLEFHLKYNKLYNSWLIEAGNIEQALQDLEEFIYIKLFKS
NIMLENNPDYYFVARDNAKNISIGQIRKLQDFLNKTSAISGHKVAVIYTA
DFMNLNAANACLKILEDAPKNSYIFLITSRAASIISTIRSRCFKVNIRAP
LPNVRNDLYLQFIQPIADNKTLDFINRFTTKDRELWLGFIENLLLLMNRI
LKKSANFNIDLLDLENKIFNKLNKNPSYLLQKFTDIKELIYNTIDYDLDL
KTSYILVVNEFFTV
>RT0863 holC, probable DNA-directed DNA polymerase III chi subunit HolC
MQQFSIYHTSDELLLKAILCLLEKCYYSDLKSVILTTDVDQQEMLNKNLW
TYSRKQFIPHGSKFDPQPTKQPIYITDELQNPNNASVLIIISPTDIEKIL
QVKEYIRVFKRIIIITDLPEDLKQLIIKINKFTGQENKIDCFTQNPMGAW
NKIA
>RT0162 hupA, DNA-binding protein HU
MNKTEFIAYMTEHCHNNKHAAHKTLTKADAEKALNLVIDSVISAIKSKHN
VNLTGFGSFEIHHRKAREGRNPKTGAKMTIDAYNQPTFRAGRKLKEACN
>RT0703 ihfA, integration host factor alpha subunit
MTITKNKISLMLNSKLGFSNNLCEEIVNTVFSNILEIAKVQKLTLKNFGS
FEVKQKKQRPGINFHTKSPVMIASKKNLRFSPSEKLKALINKSMR
>RT0511 ihfB, integration host factor beta subunit
MATKNYLIDKVHDKLNYLSKQDVKESVDLILDYLNESLKEQKRIEIRNFG
NFSIRKRKFPESNKFYNTVYYRMPKNLFKD
>RT0706 lig, DNA ligase (NAD+)
MQNIDLISEKEAKKLLEELADKIAMYNHAYYIEDNPLVSDSEYDQLFNLN
LKLENTFPHLVLSNSPSKKIGAKITNKFAKVIHQAPMLSLSNAFDEEDIR
DFLERIKNFLRINEFTPIFCEPKIDGLSFSAIYKHGLFITGATRGDGYVG
EDITINIKTIKNFPHKIDNAPEFLEVRGEIYIEKQDFVNLNKEQEAQNRG
KFANPRNAAAGSIRQLDVAITAQRPLKYFIYSGGVTEKNLASTQEQLLAK
LKALSFSVNEISKLASSEEEIFAFYEYLKTNRHNLPYEIDGVVYKLNNFA
MQNRMGFIARSPRFAIAHKFPAIIGQTKLLSITVQVGRTGMLTPVAELDP
LEIGGVVVSRATLHNFQDIARKDVRIKDYVFLQRAGDVIPQITGVDISKR
SNDTVKFDTPVFCPSCNSKLRYVSEDIIIRCDNGLNCPAQNYERICHFVS
KNAMDIAGLGRKQVAFLIDKRLISNPLDIFFLKKKNETNLIRLENMDGWG
KKSVANLWQNIEKSQKISLQRFIYALGIRHIGEQNAKLLAREFVSYNNFI
AQMELLSKNDSDVYQKLNDLEGIGDKMLVDIIDFFYVKENIQLIKKLGAV
LNIEDYKETREQNILTGKILVFTGSLKTISRVEAKEIAEKLGAKVASSVS
SNTDLLIVGVNGGSKLKKAKELNIKIIDEAEWLAFIKCLEKEV
>RT0586 mfd, transcription-repair coupling factor (superfamily helicase II)
MLQQKFPATAKCFFAIDNFTKHLNQDFILSVNNEEEALKLYKQAFFFSSN
ENIYYFPSYDTIPYDYTSPNTNIISRRAETLTKLITNNNSKLLITHAANL
LNKLPPKDFFSKYFLKLYPKIKFTIDELSMLLVENSFTRNISSNDVGEFS
VRGEIIDIILPGPKAYRINFSWDYIESIKEFDINTQISTKYCTELVISPV
SEIVLNSKTIGNFKNNYLRNFGVNHTDNPLYEAVISGRKFPGYEQLLPLF
YDSCSSLVDYLNDPICIFDNLSKQEILEFENSCNDFYLARSNANKLKVNN
FYPALSPASLYFTASAITELLEQKNNILISYENSEQASLIGNISSTSFME
KKTIFDKLFELIKANFHKKIIICSSVLSSFERIKSIIQNYKYTFNEINKL
DDAKASVINIGIIPLNQSFYTKEYLFITSSELLEEKTLYTNTNKKLKNIL
LELDNLAEGEFVVHKDHGIGQFLKLEAFEIQGKLHDFLKILYSGNDKLYV
PVENIEVIKKYGSNNVELDKLGSAAWHKSKAKLKDRIKEISLHLIQIAAK
RKLNISTPIEFDLEEYDKFCANFPFIETEDQLTAINDIRKDLTNGMLMDR
LICGDVGFGKTEVAMRAVFMVAKSLNEYLPQVAVVVPTTILCSQHFSRFI
ERFKGFGLNIKQLSSVVSSQEANIIRLELASGKINIIIGTHTLLHKNIKF
FNLKLLIIDEEQHFGVSQKEFLKSLKYSSHVLAMSATPIPRTLQMSLTGL
KELSIIATPPLNRLEVRTSVMPFDTVIIRDALLREHFRGGRSFYVVPRIK
DMEDIEKQLKQIVPELSYKIAHGKMTPSKIDEVMSEFYAGKFDILISTTI
IESGIDITEANTMIIHNADTLGLSQLYQLRGRIGRGKIRGYAYLTVASNK
KLMQHSLRRLEIIQNSCALGSGFTIASHDADLRGFGNLIGEEQSGQIREV
GAELYQEMLEEQIALLKDESIVSEQSFIPNINLGLSVFIPDHYVSDSALK
IALYRRIGNLSNEIEVEKFKDEMIDRFGLLPIEFNNLLDIVKIKLLCFKL
NIENLDSGDDGFVIRFYKNADMSDKILKFVSRYSNQTKIKPNNKLVFIKK
LVDKNIITEANQLLWTLLEI
>RT0340 mpg, DNA-3-methyladenine glycosylase I
MNKLIPLPREFFARDTNLVSTELIGKVLYFQGTTAIITETESYIGNDDPA
CHAARGRTKRTDVMFGPAGFSYVYLIYGMYHCLNFVTEDEGFPAATLIRG
VYVISHNDLYTIYTAKVKSQITDEKTQSIIISEDRRSTKFDIPNLEESNL
YLNGPGKLCKYLGINTTHNKCDLINNKDFFVSDIGLNLPYSTTKRIGITK
GTDKLWRYIVTDNKNALLNINIL
>RT0871 mutL, DNA mismatch repair protein MutL
MTIKFLSESTINRIAAGEVIERPASVVKELVENAVDGGSTKIDIILERAG
KNLIIVSDDGIGMTDKELEIAVERHTTSKLNESDFLNIHTFGFRGEALPS
IAAISKMLITSKKREADKAFQIKLIGGNKQQITVSVHNEGTKIEIRDLFF
ATPARLKFLKSDRTELAASLDIVKKIALAHPKISFNLIHNSKNLLKLKGQ
NKDFETNLKQRIIDVIGDVFIKNASYINFKTPDFSICGYTSIPTYSRASS
EDQFLFINNRPIKDKLLQVALRVAYQDYLARDRYALCAIFLQIDPQLVDV
NVHPAKAEVRFHDPNYVRNILIEAIKNALTNKSQVTVTTTDAIELFKNPL
VNKQPPINKAINVNSKASEYISFNFNRNTVCQKLTLQSDKIEQEVGKCIE
HDNQSYKQYKFGIAKAQLHTTYIISQTEDSIVIIDQHAVYERLGYEKIKY
CLKNGELVKQRLLIPEIVELSSGEKADYLYENRDKLFKLSLTIEKFGEKS
IIVTEVPNLLRDVNVQKLIQDLADHLSDFSKNIALKELIEHVIKIYICHY
SIRAVRKLSVDEMNSLLRQMENMSFSAQCNHNRPTYIELKLKDIERLFRL
>RT0289 mutS, DNA mismatch repair protein MutS
MTLCNMNLYEFRQKYNYDVATKMMQQYLDIKFAHLDCLLLFRMGDFYELF
YEDAILASNILGIALTKRGKNCEEEIPMCGVPYHALEHYLTKLITENYKV
AICDQLETPEEAKKRGGYKAVVTRDVTRIITPGTIIEENLISAAEPNYLT
SLVMTKNKKTASICYVDLSTSKIFIVNVPETEILNELARLKSREILLSEN
LKSSNLADSILKQFNCRITYQVDSFFAINKCEKIILDFYKIRDIKGIGEI
SSSQICAIGSILEYLSLTQKQNIPNLPIPKIINFHSYMTIDFSTRRNLEI
VTNIQGNLHGSVLNTLNHTVTKQGGRLLYHFLSSPLTNIAKINRRLNITE
FFYSNLGIVTRIRELLKNTSDIERCLTRITMNRSSGRDLLSIKYTLETAK
IINGLFSESHSLNLPNFIGKIIKPLSGDAELYNLIDMSIREDAPNNLNDG
GIIKHEFHPKVAQLNDLINNGKLHVEKLKDQYRKETGIDSLKISHNNVLG
LFIDITAKNVNKILDPKFIHRQTTVNSVRYTTYELQNLENELVNAQTLVI
SLEKELYTDICRKVIEKSSYLRILANSLSGLDVFCNFAYIADEYNYTKPE
FTNDLSFDIVKGRHPVVEAALLKTSKSFVYNDCHLSEAERICLITGPNMA
GKSTYLRQNAIITIIAQIGSFVPAKSAKIGVVDKIFSRIGAADDLIKGQS
TFMAEMLETSAILAQSTKNSLIILDEVGRGTSTYDGVSIAWSVLEYIHDK
LKCRCLFATHYHELTVMKNFLPALQNYTIAIEESGKDILFLHNIILGTSN
KSYGLHVAALAGLPTSVINRAAQILLKFEKISISKGKNIVSTASNNLSLF
NFEPQKHISNSKLDEEFKTIDPDKISPKEALELIYKFKKLV
>RT0731 nth, DNA-(apurinic or apyrimidinic site) lyase/endonuclease III
MQAQIVNKIFEIFSKNNPKPQTALIYKNDFTLLVAVILSARATDISVNLV
TKHLFETYNTPEKILALGEEGLKKYIKSIGLFNSKAKNIIASCQILIKNY
QASIPNDFKELVKLPGVGRKTANVVLNCLFAMPTMAVDTHVFRVSKRIGL
AKGNTTVIVEKELLQIIDEKWLTHAHHWLVLHGRYICKARKPSCRICHIK
EYCEYYINTFAS
>RT0228 nudH, dinucleoside polyphosphate hydrolase, invasion protein A
MKNSSNKYLDLPYRPGVGMMILNADNQIFVGKRIDTKISAWQMPQGGIVP
GETPSIAAMREMLEEIGSNKGYIIAESKCWYSYDVPSFLIPKLWNGNFRG
QKQRWFLIRFTGNNKDINIHTSNPEFDQWRWTSLDELLSIIIPFKRKLYQ
AVVKEFESLIQ
>RT0065 parC, DNA topoisomerase IV subunit A
MKEAKIENIDFGNALSERYLAYALSTIMSRSLPDVRDGLKPVHRRLLYAM
LQLRLEPNSGYKKCARVVGDVIGKYHPHGDVAVYDTLVRLAQHFSLRYPL
IDGQGNFGSIDGDNAAAMRYTESRMTEICMLLMKDIDKDTVDFRSTYDDS
DLEPVIMPASFPNLLANGSEGIAVGMATNIPPHNLHELCDALLYLIDNPQ
AGVNDIMNFIKGPDFPTGGIIIDQTKVINAAYTTGRGSFRVRSRWEKEEL
SYGTYQIVVTEIPYQVQKSKLIEQIAILLKDKKIPLISSIRDESTDIIRL
VIEPRDRSCDPQIVMESLFKLTNLESRIQLNMNVIGSNNVPRVMNIVEIL
QEFLVHRQNIITRRSTYLLNKIKQRLEILKVLKIVYLNLDEIIEIIRRED
EPKTIIMERFKISEIQVEVILNTRLRALQKLEEHAIIDEHSNLQKQQAIL
EKILKNHKELWKIVKKEIKSVQTQFGLNTIIGARRTSFEEVDLTNQVIDI
TAFITKEPITIICSKMGWIRLLKGHNTDLSTIKYKEGDAEKFIIEAYTTD
KILIISSKGRFFTLLADNISKGKGTAVSIKLLVDIGNNDITNILVYKPYQ
LLLLASSIGKGFLVNSNEVIAQTKAGKQIMNIPEGYACITCLPVNGNSIA
CINESRRLLIFNINEIPEMKKGQGVVLQRFKNAKLLDIKIFNKEDGLSWN
DGKKIQLEKNIVAFLGKRGSAGTLPPIGFPKNNRFSS
>RT0219 parE, DNA topoisomerase IV subunit B
MSDLFSFNNKEKKNKIIYTNYSAKDIEVLDGLEPVRKRPGMYIGGTDSNA
MHHLVSEVLDNAMDEAVAGFASIIMIKMHQDHSITIFDNGRGIPIDNHPK
FPNKSALEVILTTLHSGSKFSNNVYHTAGGLHGVGISVVNALSKHLKIEV
YQQGKLYSQSYSKGEKLTDLISTEVSKRLRGTSINFTPDPEIFSETLHFN
PKKIYEIARSKAYLYRGVSIEWECEVEVPSDIPKKALINFPNGLKDYLSS
KISLDNLVIPEIFSGNIESTMDAIKLEWAICWQNNDTSAFMKSYCNTVPT
PQGGTHEQGLKSAILRGLKAYSEMIGNKKSANLTIEDIFETASVVLSVFI
VEPSFQGQTKEKLVSNGVSKLVENIIKDHFDHFLSSDKVLATHLLEHVIA
ISEFRRNKKNERNISRKNATQKLRLPGKLADCTRTSAEGTELFIVEGDSA
GGSAKQARNRETQAVLPLWGKVLNVASSTLEKIINNQAIQDLEIALACGS
LKNYKKENLRYEKIIIMTDADVDGAHIASLLMTFFFLRMPQLVKEGHLYL
AKPPLYRLTQSNKIYYACDEEEKIKLTYKLSKTSKAKIEVGRFKGLGEMM
PAQLKETTMHPEKRSLLKVTLEDVQNVDKIVDDLMGKKPEKRFQFIYEQA
LVKMDQIINKLDI
>RT0763 polA, DNA-directed DNA polymerase I
MTKKNTLLLIDGYGFVFRAYYAQQSLSSAKGEPVGALYGFTSMLLKLLSD
FKPQYGAIVFDSGGKNFRHKIYQNYKANRPTPPEDLIGQLPLIRDVASHL
NFAILEKNGYEADDIIATFATKTITLGKEVIIISSDKDLLQLMSKNIKIY
DPIKCKYITEDDVIIKFGTTPDKLREVMALIGDRSDNIPGVPSIGPKTAS
SLITQFGSVENIFNSLDQISSIKQRKTLQNSREAALISWRLIGLDSNVDL
DFNLNNLEWSHPNSEKLIGFLQKYGFKSLYKRVENLFYIKINDHEEIVDN
KVTEAKEISNASELENFAKEAEKIGIFGIYLLQQKGNNCALILSLQNQSY
IIKITNNNLFPYNDNIKNNNDWFSYIILNLLTNKSIKKITYSLKHLLKFY
ANQSHKITAIEDLELMQYTLSAGLVQKNLFAETLTKDNIINESAKIVINF
ISLYKQTLLALQKNKAFRLYREIDLPTCFILDKMEKIGIKVDANYLHQLS
DEFGTEILKIEEEIFALSGTKFNIASQKQLSEILFKKMQLPSGNTLAKTS
SYSTKAGILKKLSEDGYHIATLLLRWRQLTKLKNTYTDSLPKQINNITKR
IHTTFLQTSTTTGRLSSQEPNLQNIPTRSSDGNKIRQAFIAEDGYKLISA
DYSQIELRILSHIANVDVLKQAFINKEDIHTQTACQIFNLQKHELTSEHR
RKAKAINFGIIYGISAFGLAKQLNVSNGTAAEYIKQYFAEYKGMQEYMVQ
TKAYANRNGYVTNFFGRKCFIPLIHDKKLKQFAERAAINAPIQGTSADII
KIAMIKLAQEIEKRKLKTRLILQIHDELLFEVPEIELELVIPIIKKIMEY
STNIDVPIITEIRAGNNWKEIH
>RT0529 priA, primosomal protein N prime
MRIAKILLPVSKLFPLDYLITEDLELNIGDLVVVHFRNQELTGIVWELAT
NSEAKKIKTIKAKVPLNLNISLEVLALIKWMSSYYMSELGSIAKLVLPIN
IAEKPIKIKEQQVKNYFVLPQLSEEQKQAVTIFNESNKPTLIKGVTGSGK
TEIYFHIIADHLMKGQQVLIMLPEIALSRQIINRFIDRFGFEPIIWNSSV
TKAQKKMILRGILSDKVKVVIGARSSLFLPFHNLGLIVIDEEHDDSYKQD
DNILYNARDTAIVRGVFDKAKIVLCSATPSLETIYNIKTHKYQLVTLVNR
YKNIDLPNIEIIDMTKEKLPKNSYLSKILIDAIKGNLENKKQVLLFLNRR
GYAPLMLCKACGHRFTCRFCSAWMVLHKATKTLECHHCGYQSKIFSSCPE
CLEDETLTICGPGIERIEEEAMLLFPKSKIAVISKDHAKTPAKIAQLLHQ
MENLEIDILIGTQIITKGYHFPNLTLVGVIDADLGSNNAELRASERTFQL
LHQVGGRAGRGDSKGVVYLQSYYPDNIIFSYVKVGDEDSFFTNELEIRKA
ANMPPFSKTASLILSGFSESKILDIAKNIVQIAPKANVKILGPARALMSK
LAGKYRYRILIIADKKFNLQQYLKFWLSLIKIPSYCQIKIDIDPKTFY
>RT0747 recA, recombinase A
MSNTDKERAIAAALAQIEKSYGKGSVMKLGQRPNIDIEAISTGSLGLDIA
LGIGGVPKGRIIEIFGPESSGKTTLTLHLIAESQKNGGTCAFIDAEHALD
PAYAKKLGVNIDELIISQPDTGEQALEIADTLIRSGGIDMIIIDSVAALV
PKSEIEGEMGDAQMASQARLMSQALRKLTASINRTNCITVFINQIRMKIG
VMFGSPETTTGGNALKFYASVRIDIRRIGSIKDKEEVIGSQTKVKVVKNK
VSPPFKTADFDIMYGSGISKEGEIIDLGVKLEIIEKSGSWFAYNKVRIGQ
GRENVKQYLKEHPQIANEIEKIIREKSSAITNINLDQTEE
>RT0100 recF, DNA replication and repair protein RecF
MKNIFLHSLNLENYRNFKNLELKIDNIPIILTGENGSGKTNILEAISLFY
PGRGLRSSKLTDICKTSEDYCRVKALLQSKLGIADFSTHIKRNSNRRITE
YNASKIANNELSKFTSMVWLTPQMEGIFTSSSTDRRKFLDRIVYNFDTKH
AELLNKYEYYMHERNKILAEDIRDNNWLKIIEENMANISNIIANNRLKTI
RFMQQAIDEIENEFPKADLSIDGIIEQKILNVEEDIVSFIITELYQTRSK
DKLLGRTSFGIHKSDFLVKHQKKNILAKFCSTGEQKAILIAIILAEMNST
IKLTKITPILLLDEIFVHLDDKRRQYLMDFFTALNIQLWVTATNLDGIEN
FANKAQLIKL
>RT0582 recG, ATP-dependent DNA helicase RecG
MILATLEQFLFAPVKAFINIREDTVSAFKRLGINNIRDLLFYLPVSYQNK
ILSPNLTEVRGGEIIQTEIIVNSINLQKKGNQPLKITASNNTGSILLVFF
HKPPQFILNKLKVGTKHIISGKVQFFNYQLQILHPEFITNPKLSKAIEPL
YSITYSLSNKQLYSYIIKAIEIFEEKCKGIEDKEVHEYLDVILQNLKILH
VFFSPHNLISWSSTMDIVVNPRYATVAAKKQLAIKELIANQISLLNVRMQ
INRKQGNIYPKATSIQDNILRELGFELTYYQKQVIEEIESEQSDKVEMMR
LLQGDVGSGKTLVALLTMVNVVTTGLQATLMAPTDLLANQHYDFFVKALK
NTNIKVGLLTGKILGKARKNIIIQLVNGKIDILIGTHALFQEKVSFKKLG
YIVIDEQHRFGVQQRLNLINKGVNPDVLIMTATPIPRSLALTMFGDMTIS
KLMGKPKDRLSIVTKTMSINKIGYIIEAINKRLIAGERVYWICPLITQRE
KEALQEDHLLMDVINRFNSIENVYQGYTGIIHGKMANDQKERIMKQFKEG
KIKILVATNVIEVGIDVSEATLIVIENAEQFGLAQLHQLRGRVGRCSLQS
YCILLYNPKRLGKVAQNRFKIMKHTNDGFYIAEQDLKLRGSGEILGIKQS
GEIDFFFADLKDDYELLIKAHKVAERAICTKDNVNFINFQIKLFAKSQVS
YLI
>RT0515 recJ, single-stranded-DNA-specific exonuclease RecJ
MKPQISINGKIWKQKQIKEDIVTELCRSFKISDLLARIVSLRVNNLAEVE
NFLIPKIKNLLPDPFHLLDMDKAVDRIVQAIVHNQQICIFADYDVDGATS
AALLKHLLRDLNIICDIYVPDRIYEGYGPTPLAIQKIKDNGTELLITVDC
GAMAHDALKYAKDVKLDVIVIDHHISTAILPDAVAIVNPNRIDETSEYKY
LAAVGVTFLFATAILSNLKKRNYFSQSIPTPNLMQYLDLVALGTVCDMMK
LTGLNRAFVATGLKVMQQRQNIGIKTLYDIAGINEIPQCYHLGFILGPRI
NAGGRVGKSNLGANLLATSCHNEASKLANELEKYNNERKVIELLMIDEAI
DIALTQKDSSLLFVVKEGWHPGVIGIVAGRLKEKFDKPVAVVALNNGIGK
ASCRSILGIDFSAEIINAKSKDLIIAGGGHAMAAGFTVTAGKLEELQDFL
NNAFSISINKLANYKHAEYDIDLTVNSVNFYLMEELKILEPFGSGNHEPI
FKFDDLFILKADIVGSKHIKCMLAPDKRGFGNKVLSAIAFDAVGTPFEDI
LLSSRAKHISAIGTLKTNNWKDNYTIQLIIKDLLLK
>RT0173 recN, DNA repair protein RecN
MFYSLSVKNFILIDELEIEFNKGLCVITGETGAGKSILLDAILFCLGYKT
SNNVIKHGKDYTVVNIIFSLNDEIKKFLIQNFIEPEELLLVKCLQKVEGR
KNFFINNQIVTKTLMKQLANYLFELHGQNNNITLLEASTQRDILDSYGNL
LEFRVQLAKCYQIWQNTRKEIEEITVKQNEIEQEIDYLSFVTEELTKLNI
QIGEEETLTNIRKDLQNKGKNLQLIRDIIAEINNPEINISINRACKLLAR
QDYNDRFNAVVTSLEEAYNNLEVARQELSNILGSFTYEEYNLEETEERLF
LIKAISRKYNVPANELGIFLDKSLEQLGILKNKIANSNKLQAQEVLLQEQ
YYKLASDLSAKRLIAAKHLEESLNQELKQLKMENANFKIEVKTRIDPTAS
GNDDIVFKASTNPGMKIEAINKIASGGELSRFMLALKTSLFDKMIKPSII
FDEIDVGIAGEAADKIGDRLKKLSSVTQVIVITHQPQVAGKADLHIKIEK
TQLEQETKVKVKALNLAERQTELARMISGKTITAASLKVAKELLHPVAFS
HDQK
>RT0425 recR, recombination protein RecR
MNKTNDIDQLIYLFSKLPGLGIRSARRIVLYLLQDKDVRLKSLINHLIEL
DKKIVKCEICGNMDTKNICHICSSEHRDKSTIAIVETVAELCAMERSGNF
KGLYHVLGHNLSAASRQNPRILRLPELLKRCFVENIKEVIIATNSTLEGQ
TTAYFIIEYLKEHPAKISRLASGIPIGGELDYLDEGTLSAAINLRQPCE
>RT0661 rhlE, probable ATP-dependent RNA helicase RhlE
MKNFNLSEELIIALETMNITEPTEIQKQSIPVAMSGADILASSQTGSGKT
LAYLLPLIDAFIKNKTTALILVPTRELATQIHSTLNKVTIAYKINSAVLI
GGEPMFKQFMQLKKNPKVIIGTPGRIIEHLNRRSLKIEHIGIIVLDEMDR
MLDMGMKEQLEDINKFLPEKRQVLMFSATMPKHIIAVSQKYLNNPVRIMV
GATNKAAAEIKQELMHVSNKEKFSELTKQLGNRVGSVIIFVKTKRSADQL
AKMLKYENHKAEAIHGDLSQSQRARVILSFRKLNHRIMVATDVAARGLDI
PHTQHVINYDLPMCPEDYLHRIGRTGRAGAIGHALSFISPDDVVRWRAID
RLVNKGESTPRSTFRSDKKKRKRSFDKRTSIGDNKKFNSFDNNCRRTFDC
NRYRSTI
>RT0713 rnhA, ribonuclease H
MDSKVVIYTDGACSGNPGPGGWGALLKFNDASKKIFGYELVTTNNRMEMT
AALEALRVLKKSSIVEIYTDSKYLQHGITVWIHNWMKNNWCKNNNEPVKN
VDLWQKLYSELSKHTIMWRWVKGHASNSGNIAADKLAVQGRETAMEILKC
RG
>RT0192 rnhB, ribonuclease HII
MEVNLLQYEQKYHNYIVAGVDEAGRGSLVGPVVASAVIIDKVDIISGIKD
SKKLSKNKRDILYEQITSNYVWSTAIIEHTEIDDINILEATKKACTIAVA
NLSLKPEKILVDGNMKFSDVRFISIINGDNLSLSIAAASIIAKVTRDRLM
LELSAEYPQYLWHKNYGYGTREHIEAINTHGLSSYHRKSFKFC
>RT0374 ruvA, Holliday junction DNA helicase RuvA
MIGKLSGKIDSQCDDYVIIDVNGVGYLVYASGTTLAKLVEGRFYKLFIET
HVREEHIHLYGFLTLEEKNFFNLLQSVNGIGTKMALSILSNLTPTDIKIA
INNDDKNIFKAISGVGDKLTERIMLELKGKIAKIFSSSAIIKDSSNISSV
EINEVIKALVNLGFTRFEAQNTVQGIITQNTKISIDELIKTALKNRNSSF
>RT0375 ruvB, Holliday junction DNA helicase RuvB
MTNILSPEKSENDQELPIRPSYLQEFVGQQQIKENLLVFIKAAKSRNEHL
DHTLFYGPPGLGKTTLAKIISNEIGGNFKSTAGPAIIKAADLAAILTNLE
KNDVLFIDEIHRLNTLVEEILYSAMEDFELDIIIGEGSAARSVKITLPKF
TLIGATTRFGMLSNSLRDRFGIPMRLNFYNTEELKQVLNRASKLLDIDLT
DSGSEEIAKRSRGTPRIALRLLRRIRDFAVVDGKLRIDKEICDFGLKRLT
VDSIGLDSNDYRYLKFIADNYHGGPVGIETIAAALSEQRDELEETIEPYL
IKIGLVKRTPRGRVITIAAFEHLKMPIPNKSQHQFNILNENE
>RT0017 ruvC, crossover junction endodeoxyribonuclease RuvC (Holliday junction DNA nuclease RuvC)
MIVLGIDPALGNLGWALVAKEYTKLKYLASGTIKTHSKDEIHNRLAFINS
TLEKVILKYQPNIAAIEETFINTNSVTSLKLGYARGAIMSLIGRYNLNMQ
EFKPNTVKKTVTGYGHAKKEQILYMIKHLIPGTDLITNSDEADAVALAYT
SLVTKKY
>RT0052 sca2, 190 kDa antigen precursor
MTITGKLKSVLLTYSFIILINLLTAMSESLASSWNPPPPPPPPPIEGLNN
FKSLNPPSKHSLGNSSKVEQSQHTNKNCTTSNIQMQFSQSLEVPTPTGEF
GKKYSKLINPKTSKQNLKIEFPKKIISLVRDELTLKYFTADIERILTLFS
KKDDLILSEAKEKYKEVIQDPYIAQFTNKNQNTGSFLENKLFEETREEAI
LRLLSLEQLDAQMKKEILSKQGDILEQLKFINANTEILGSYGQTASTDIL
KKIPKELPKILSKQGDILEQLKFINANTEILNEHSKAILKDKLKELSKQL
DEISSNQLVGFILDENKINTNLKNVHFSEKKVRETVSNLNNKILEKIFLK
DDGTITEQDLTKILQKHQETVLIKNLTKAIVYIDGNKNNATVNKTLEKCL
EQTTPEQQELILDVLTHNTRIRTVLITKIEREQRQNHNKKLNKNIAGDSF
VDALKKALVHRTSNSETILKVVEQRKQETPKNLNVWDRISQNIPNLNNQN
VQDENNKEWDESNKNADDLNNTNIYMITKHDLERAVNETITKFSAMSTLL
KDKKNAGAYQRYLKEAEDQLALAQEKGKELIKNSAQTFKIIPKKYQDDIN
ENWQNYLSPAEMIELTALNEHTNTLKSNKNKSGHFRSSEEALQYKAKQHE
YYTLLAELKKIGIAKQQEKLVKDYVDEMITNAKQAVEKFERTSLEHINQK
KENKQISKEILDAQERLENAKQKIEFIKFKYIISNKRQVNSSDEDSDDDA
DKNAIKQKTELENAQKDINQAKKNLEDAKAKYAALQITLNYSPNGMDSKT
TEDQEQFKTDNIAAESLEDMAVMFKDSEEAAERKEEVTLNYSPNGMDSKT
TEDQEQFKTDNIAAESLEDMAVMFKDSEEAAERKEEVTLNYSPNGMDSKT
TEDQEQFKTDNIAAESLEDMAVMFKDSEEAAERKEEVTLDYSPNGMDSKT
TEDQEQFKTDNIAAESLEDMAVMFKDSEEAAERKEEVTLDYSPNGMDSKT
TEDQEQFKTDNIAAESLEDMAVMFKDSEEAAERKEEVTLNYSPNGMDSKT
TEDQEQFKTDNIAAESLEDMAVMFKDSEEAAEQKEEVNRQHHEEQNRQKQ
EHNCLDTEEEVVHKEKIADLTAETETKVFKKEIALEENEAMDVSFKTETI
VEQDEAIQRQQVSDDTSRKVAILVKATSTLHKPVHHNILSDRLKVTVIGA
GDEKTNINRGLWISGLYGVNKQGSWKNIPKYQGRTTGFTIGADAEFINNH
DVIGIAYSNLESKIKYNKKLGKTAVYGHLLSIYGLKELIPGFSLHTIVSY
GYNYIKNKSKNLDKIIGKYQNNNLSFQTLLNYKYCTKYNLHFIPSIGFKY
DYSRASNYKEYNIDIENLMIQKKSNQSFESSIGGKIVSKPIIITNNTILT
LSVHGNIERHFNNKNTKVNAKATFKKQTLQETIIIPKQPKFGYNIGNNIL
MSIKNINVLYEYNYYTHKKYHSHQGLIKLKINL
>RT0317 topA, DNA topoisomerase I
MKLVIVESPAKAKTINKYLGDEFKVIASFGHIRDLPSKKGSVLPDKNFAM
EYDISDKASKYVDAIVKYARKAEAVYLATDPDREGESISWHVAEVIKEKN
KVESDDFFKRVAFNEITKKAIIHAVENPRKLDTNLVNAQQARRALDYLVG
FTLSPLLWRKLPGCKSAGRVQSVALRLICDREDEIERFKAEEYWDISLKM
QNSNNELFTAKLTHVNDQKLKKFSIINEKEAKDLTRKLKLQKFYVEKIEK
KQQKRQPQPPFITSSLQQEAARKLGFSAKKTMQIAQKLYEGVDIGKETIG
LITYMRTDGVTLSNDAIADIRKLIDKNYGNKYLPINPRIYQSKVKNAQEA
HEAIRPTNITYTPDNLKQKLEKDYYKLYELIWQRTIACQMENVIMDLVIA
NLASENKEYLAKANGSIIAFDGFYKVYRESLDDEDEEDNKMLPPLKAQEH
IKTKEVIPNKHFTEPPPRYSEASLVKKLEELGIGRPSTYASILSVLQDRK
YVTLEKKRFIPEELGRLVTVFLVGFFKKYVEYDFTAGLENELDEIAAGKL
EWKTSLNNFWSGFNNNIESVNEQKITEIINYLQKALDYHLFGENKESKVC
PSCKTGQLSLKLGKFGAFLACSNYPECTFKKSIVSGNDNNEDEGNLSTIL
NDNKILGTDKDGVEIYLKTGPYGPYIQLGEQCGKVKPKRTPVPTNLKQSE
ITLEVALKLLSLPLKIGIHKDSGEEIIIGYSKFGPYIKYMCKFISVPKKY
DFLNLNLDDAIKLIENNKAKLEKKHRSMV
>RT0823 uvrA, excinuclease ABC subunit A
MNEEYIKVRGAKEHNLKNINVDIPRNKFVVITGLSGSGKSSLAFDTIYAE
GQRRYVESLSSYARQFLHLQNKPNVESISGLSPAIAIDQKTTSKNPRSTV
GTITEIYDYLRLLYARVGIPYSPVTGLPIHSQTVAEMVDIINELPKGTKV
YLLAPIVRGHKGEFRREIINLKKQGFQKLIVNGEVCEIDDLPKLDKNKKH
NIEVIVDRIVLDENLGNRLADSLESSLNLADGITYLEIVELPQAVKSQFK
KNQRITFSEKYSCPVSGFHLTEIEPRIFSFNSPFGACPKCEGIGKEFFFD
RDLIVQDQRISIKDGAIVPWGSTSSKFILETLKALADHYKFSIEVPFISL
SQNVKDILFEGSGEEEIKFEFHDGSKTQIIKQPFAGIIPSLQEKDRTIES
VLIKEELAKFKSEHKCTACSGFRLKDEALCVKIANLHIGEVAGMSIAALQ
KWFSHLEEKLNQKQLFIAKRILKEINERLKFLMNVGLDYLTLSREAGTLS
GGESQRIRLASQIGSGLSGVLYVLDEPSIGLHQRDNTRLIATLKRLRDLG
NTVLVVEHDEETMYEADHIIDIGPGAGIHGGRVIAEGNAEKIKHFEESIT
GRYLSGRQTIKVPSETRVGHDNRAIELLGAVSNNLDNVDIKIPLGTFTAI
TGVSGSGKSSLMIHTLYKAALKHLEPTSKVFPGKYRELKGLEYIDKIIDI
NQSPIGRTPRSNPATYTGAFTHIRDWFVELPESKARGYKVGRFSFNVKGG
RCEACQGDGLIKIEMHFLPDVYVKCDICNGHRYNRETLEIKYKGKSIADI
LMMTVEDAMQFFDKIPLIYEKLITLNEVGLGYIKIGQSATTLSGGEAQRV
KLAKELSRRSTGKTLYILDEPTTGLHIDDIKKLLKVLHKLVDMGNTVLVI
EHNLDVIKTADYIIDVGPEGGDKGGKIVVCGTPADIAACKESHTGRYLKQ
YLV
>RT0193 uvrB, excinuclease ABC subunit B
MNNFSIISAYKPAGGQPKAIDEIIAGLNSKKRSQMLLGITGSGKTFTMAN
IIERTNRPTLIMAHNKTLAAQIYLEMKSIFPKNAVEYFVSYYDYYQPEAY
IVRTDTFIEKDSSINEQIDLMRHSATRSLLERRDVIVIASVSCIYGLGAP
DLYYQMTVHLELGQSYPRDKLLNDLINLQYKRNDIGFERGCFRVKGDHID
IFPSHYSDKAWRLSFFGNELEYIHEFDPLTGEKLTQLDKAMVFGNSHFVM
PQKTINNAISSIEVELQKHLDVLKSQDKLIEAKRLNQRTQYDLEMLTETG
SCKGIENYSRFFTGRNAGEPPPTLFEYLPKDALLFLDESHVSIPQIRAMY
NSDRARKEVLVEHGFRLPSALDNRPLKFEEWEKFRPQTVFVSATPGPFEL
EETGGTVVELIIRPTGLLDPECIIKPATNQVEDLISEIQTTITKGLRILV
TTLTKKMAEDLTSYLQDLQYKTYYLHSNIHTLERIEILRDLRQGNIDILV
GINLLREGIDIPECGLVAILDADKEGFLRSEVSLIQTIGRAARNSRGKVI
LYADKMTKSIDKAVSETLRRRQIQQEYNKKYGIIPKTINSAIHTLESLEE
IHDNKLDKKQTNTLLNNPAKLKSYMDKLKKEMFKAASNLEFEQAAKLRNQ
LKTLEKAVLELS
>RT0560 uvrC, excinuclease ABC subunit C
MSLEISGRELIKSKIIDAPECSGVYKMLDVSKQVIYVGKAKILKKRLTNY
IKSDLDNKTLRMIANTYFLEYIITHSEVEALLLEAQLIKKFQPKFNILLK
DDKSFPFIKLSLDHDFPQLLKYRGKALSDGKLFGPFASNTQVNTTLTELQ
KIFKLRSCTDNYFNSRTRPCLQYEIKRCYAPCVGKINKENYRVLVIQVKD
FLQCRTRELQENLSKKMQELSSQMRFEEAAEIRDRIKALSYVQLKSRILD
VVKNADIISIVHKDLHYCIEVALYRAGQPYGNIPYFFSSTENSTHEEVLE
YFLLQFYQKQQVPSEIIMNHEINSKENVIEAIKKINNISDLSIIVPHKGD
KAKLVHKAEVNALFSLEQYLKKITKNTEIMFEVKKLFDLPEIPERIEIYD
NSHIQGMFAVGVMVVAGKIGFDKKEYRVFSLSSRNFTIGSEIELRDDIKG
DDYGMLRQVLTRRFTRLKNEPNKLPSLMIIDGGKGHLTVVKEVMDKFGMN
IPFVCMSKGRDRNAGLEQLHMQGKEVFTLDKNLLVMKYLQILRDEAHNFA
IKNHRLGRSRAIKISSLDDIDGVGEARKTALLHYFGSYKAVCNATIDELA
KVKGISKSLASMIFNVLNRKISLDNS
>RT0434 uvrD, DNA helicase II
MKDKMQNQNFMHTLNSEQKKAALHTEGPLLLLAGAGTGKTKVLTSRIANI
IQQNLALPHNILAVTFTNKAAKEMSERVHNLINCYGVNIGTFHSMAAKIL
RDQIENLNLGLNNKFTIISHDDQLTLVKDIVKLKKDIDTKKYTPKLIHII
ISRWKDQGLLPSKLSASDTNLPLQRVAKLIYEEYQKNLLISNVLDFGDLL
LYNNELFIKNPEILKYYQEKYRYILIDEYQDTNIAQYLWARMLASLYRNI
CCVGDDDQSIYGWRGAEVGNILRFEKDFAGATIIKLEQNYRSTLPILAAA
SNVINNNKNRHSKTLWTDSASGEKIKIISCLSDKEEARYIACEIDKLVRE
ERYHAGNIAILVRAGFQTRSFEEAFINSAMPYKIIGGLRFYERMEIRDVL
AYIRISLNQNDNLALERIINVPKRAIGAASLNKIRSYALERNISNFVAIK
EILETGIFKAKSYESLKDLLTKIDNWYEKFITDTPINVVKTILDDSGYLS
MLQEEKTEEAFGRIENINEMLRAIAEFNDIHDFIEHSSLVMENEVLETNY
GGSVTIMTLHAAKGLEFDVVFLPGWEEGVFPSQRSLDEDGEKGLEEERRI
AYVGITRAKKDLYITHAESRKIFYEIVHSCPSRFINEIPDEITIRTSSMK
KYNSFYKF
>RT0805 xerC, DNA integrase/recombinase XerC
MLDISIQELIKQWQKYLILQRNYSNNTVIAYNNDLKHFLEFMNYYNSELV
TINHIKTVDIRLIRSWLAKRKYENFTASSIARGLSTVKNFYKFLEKTILL
NSHIIFSIKSPKKAKLLPKALSVDDVLISLEHIEGYGNVKWVELRNKALL
VLIYAAGLRISEALSITKLHLQNLEFIKIIGKGSKERIIPWLPFARNLIT
KYLGILPYKLDENEPIFRGKHGKKLQPSVFNRELIKLKRVYGLPEYLTAH
SFRHSFASHLLEYGADLRSIQELLGHKSLSTTQKYTQTSIKHLEAVYNTA
YPIKK
>RT0350 xerD, integrase/recombinase
MLLAERALSKNSILSYKRDLLDFHNYLTKQKISELNITTRNIRKWIEYLA
SNNLHARSINRKISTIKSYYTFLISENHTAFNPVLNVDLPKYQNKLPVIL
SIDQIKLILEYCSKDHTPEGIRLNAMIHLLYASGLRVSELVSLKLADILT
NNTSKGIVRKIFSVLGKGNKERVIVINDQAVLSITKYLKIRDIFVNKAKS
KNLIYLFPSSAVAGYMTRQNFAILLKSVALDIGLNPKNVSPHILRHSFAS
HLLEGGADLRVIQELLGHADISTTQIYTHLHTNHLKQALLHHPLNKN
>RT0669 xseA, exodeoxyribonuclease VII large subunit
MIDNDIANQVPKEFSVSEISNKIKELIENNFGHIKVKGEISGLKISSSGH
AYFNLKENTAILACTCWRPILVKIKFPLNDGMEVVIGGKLSSYSGNSRYQ
LSVDNLQPAGLGAMIQILNERKIRLEKEGLFNKKRIPIPFLPDKIGVITS
ITGAVIKDIIHRIRERCPTRIIIWQVSVQGENSSHEMAEAIEGFNNLEEI
HKPSVIIVARGGGSIEDLWSFNDEILVRAAYNSKIPIISAVGHEADYTLI
DLAVDKRAPTPTAAAEFAVPVRSILNNTIQSYEKILLNNTNRLIKYHEQS
IVNYDKIHRYFAYYINNRQQLLDETGFNLLDVLIRCIALKETKLKSFAKE
RINYAKIINYKILELTHQTAYLLKSVNNTLKNFEYKLELNSTLLASLDYH
NVLKRGFAIVTGDAGNFLSSKSTATNEQSLNIKFFDGEINVVLSSHDLNA
RSS
>RT0339 xseB, exodeoxyribonuclease VII small subunit
MSNTKTLEDNISFEEALRELEEIVKKIDNGQESLETAVNSFERGILLKNY
CEKKLKEARLKIEKITKLADSTVILEETEV
>RT0251 xthA1, exodeoxyribonuclease III
MKIVTWNINSLRLRIELLRKLAYEYQPDIILLQETKVANSLFPLEVIKNI
GYEHVIYSGQKSYNGVAIISKLPLNNVFSLELYNDDKRHIAAIVHGLEIH
NFYVPAGGDIPDIEVNLKFKHKLEYVRLMKEWFTTNRTKNDKIIIVGDLN
IAPHEHDVWSSKQMRNVISHTDIERSLLVELQNSLGFIDSNRYFISLDKK
CYTWWSYRNVDWKKSNRGRRLDHIWVSDNLKDALFSMNVLSEARDWLRPS
DHVPYFVTLHF
>RT0671 xthA2, exodeoxyribonuclease III
MKIATWNINSIKTRLNLLRNFLSKENLDILLLQEIKCETEKFPFDELSDL
PYHFYVHGQKSYNGVAIISKFPADKIIKDFQNNYCSDQARFIEIKLSLSI
GYSNIISLYAPNGSFVSSNKFVEKLKFYDNFINYLSTKKSCYEKTIIGGD
FNIAPFDIDVYSSKVLTETTCCTKVEQKKLRTILNSGFEDLYRLMHPNKQ
EFSWWDYRAGCFEKNKGMRIDMILGCNNTIDYLEKCYMDYNFRTQKKPSD
HIPIIANFCSSFSTKSGIKY