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2024-05-19 03:12:34

Gene list

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COG category: Replication, recombination and repair
Organism: Rickettsia typhi str. Wilmington, Wilmington

Number of genes found: 75

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Rickettsia typhi str. Wilmington, Wilmington
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
NA RT0536 possible RecO-like recombinational DNA repair proteinRecName: Full=DNA repair protein RecO; AltName: Full=Recombination protein O; chromosome CDS684741 711 + 0.247539
NA RT0269 rickettsial conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS338385 1143 - 0.300962
NA RT0223 rickettsial conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS288306 663 + 0.248869
NA RT0391 conserved hypothetical proteinRecName: Full=Uncharacterized protein RT0391; chromosome CDS492156 2595 - 0.25395
NA RT0135 rickettsial conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS175887 2124 - 0.310734
NA RT0844 rickettsial conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1076211 1563 - 0.225208
NA RT0552 rickettsial conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS714652 966 - 0.278468
NA RT0533 probable methylaseSubName: Full=Probable methylase; EC=2.1.1.-; chromosome CDS682218 711 + 0.291139
NA RT0833 DNA polymerase, bacteriophage-typeSubName: Full=DNA polymerase, bacteriophage-type; chromosome CDS1064453 777 - 0.311454
NA RT0099 rickettsial conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS131548 660 + 0.292424
NA RT0622 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS812539 666 + 0.234234
NA RT0623 rickettsial conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS813926 234 - 0.25641
NA RT0179 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS227799 966 + 0.254658
NA RT0696 rickettsial conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS882896 951 + 0.254469
NA RT0842 rickettsial conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1074435 966 - 0.252588
NA RT0352 rickettsial conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS443221 1164 + 0.273196
NA RT0286 rickettsial conserved hypothetical proteinRecName: Full=Uncharacterized protein RT0286; Flags: Precursor; chromosome CDS362555 888 + 0.226351
NA RT0719 ATP-dependent helicase/nucleaseSubName: Full=ATP-dependent helicase/nuclease; chromosome CDS913839 2472 + 0.284385
NA RT0733 rickettsial conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS933749 1116 + 0.293011
NA RT0677 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS857371 882 - 0.301587
NA RT0011 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS10275 1074 + 0.265363
NA RT0321 possible Holliday junction resolvaseRecName: Full=Putative Holliday junction resolvase; EC=3.1.-.-; chromosome CDS408107 471 + 0.312102
NA RT0215 rickettsial conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS276935 1197 - 0.25731
NA RT0824 single-strand binding proteinRecName: Full=Single-stranded DNA-binding protein; Short=SSB; chromosome CDS1051295 459 + 0.318083
NA RT0496 rickettsial conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS633560 2862 - 0.251572
dnaA RT0589 chromosomal replication initiator protein DnaARecName: Full=Chromosomal replication initiator protein DnaA; chromosome CDS762664 1392 + 0.324713
dnaB RT0531 replicative DNA helicaseRecName: Full=Replicative DNA helicase; EC=3.6.4.12; chromosome CDS678118 1494 + 0.312584
dnaE RT0765 DNA-directed DNA polymerase III alpha subunitRecName: Full=DNA polymerase III subunit alpha; EC=2.7.7.7; chromosome CDS970720 3543 - 0.322326
dnaG RT0848 DNA primaseRecName: Full=DNA primase; EC=2.7.7.-; chromosome CDS1084703 1782 - 0.273288
dnaN RT0405 DNA-directed DNA polymerase III beta subunitRecName: Full=DNA polymerase III subunit beta; EC=2.7.7.7; chromosome CDS516585 1146 + 0.291449
dnaQ RT0718 DNA-directed DNA polymerase III epsilon subunitRecName: Full=DNA polymerase III subunit epsilon; EC=2.7.7.7; chromosome CDS912298 690 + 0.317391
dnaX RT0856 DNA-directed DNA polymerase III tau subunitSubName: Full=DNA nucleotidyltransferase (DNA-directed); EC=2.7.7.7; chromosome CDS1090425 1526 + 0.271953
dnaX RT0855 DNA-directed DNA polymerase III gamma subunitSubName: Full=DNA nucleotidyltransferase (DNA-directed); EC=2.7.7.7; chromosome CDS1090425 1203 + 0.282627
gyrA RT0196 DNA topoisomerase II subunit A (DNA gyrase subunit A)RecName: Full=DNA gyrase subunit A; EC=5.99.1.3; chromosome CDS250064 2718 + 0.348418
gyrB RT0569 DNA topoisomerase II subunit B (DNA gyrase subunit B)RecName: Full=DNA gyrase subunit B; EC=5.99.1.3; chromosome CDS736101 2424 - 0.334571
holB RT0163 DNA-directed DNA polymerase III delta prime subunitSubName: Full=DNA nucleotidyltransferase (DNA-directed); EC=2.7.7.7; chromosome CDS203347 795 + 0.244025
holC RT0863 probable DNA-directed DNA polymerase III chi subunit HolCSubName: Full=Probable DNA-directed DNA polymerase III chi subunit HolC; chromosome CDS1097315 465 - 0.266667
hupA RT0162 DNA-binding protein HURecName: Full=DNA-binding protein HU; chromosome CDS202937 300 + 0.32
ihfA RT0703 integration host factor alpha subunitRecName: Full=Histone-like DNA-binding protein; chromosome CDS896923 288 - 0.253472
ihfB RT0511 integration host factor beta subunitSubName: Full=Integration host factor beta subunit; chromosome CDS651272 243 - 0.238683
lig RT0706 DNA ligase (NAD+)RecName: Full=DNA ligase; EC=6.5.1.2; AltName: Full=Polydeoxyribonucleotide synthase [NAD(+)]; chromosome CDS901463 2082 - 0.322767
mfd RT0586 transcription-repair coupling factor (superfamily helicase II)RecName: Full=Transcription-repair-coupling factor; Short=TRCF; EC=3.6.4.-; chromosome CDS758439 3363 - 0.290217
mpg RT0340 DNA-3-methyladenine glycosylase IRecName: Full=Putative 3-methyladenine DNA glycosylase; EC=3.2.2.-; chromosome CDS434028 672 - 0.315476
mutL RT0871 DNA mismatch repair protein MutLRecName: Full=DNA mismatch repair protein MutL; chromosome CDS1102840 1803 - 0.302274
mutS RT0289 DNA mismatch repair protein MutSRecName: Full=DNA mismatch repair protein MutS; chromosome CDS365136 2676 - 0.306054
nth RT0731 DNA-(apurinic or apyrimidinic site) lyase/endonuclease IIIRecName: Full=Endonuclease III; EC=4.2.99.18; AltName: Full=DNA-(apurinic or apyrimidinic site) lyase; chromosome CDS931314 639 + 0.306729
nudH RT0228 dinucleoside polyphosphate hydrolase, invasion protein ARecName: Full=RNA pyrophosphohydrolase; EC=3.6.1.-; AltName: Full=(Di)nucleoside polyphosphate hydrolase; chromosome CDS292889 486 - 0.323045
parC RT0065 DNA topoisomerase IV subunit ARecName: Full=DNA topoisomerase 4 subunit A; EC=5.99.1.3; AltName: Full=Topoisomerase IV subunit A; chromosome CDS84353 2214 - 0.324752
parE RT0219 DNA topoisomerase IV subunit BRecName: Full=DNA topoisomerase 4 subunit B; EC=5.99.1.3; AltName: Full=Topoisomerase IV subunit B; chromosome CDS282215 1992 + 0.310743
polA RT0763 DNA-directed DNA polymerase IRecName: Full=DNA polymerase I; Short=POL I; EC=2.7.7.7; chromosome CDS965142 2619 + 0.298969
priA RT0529 primosomal protein N primeRecName: Full=Primosomal protein N; EC=3.6.4.-; AltName: Full=ATP-dependent helicase PriA; chromosome CDS674309 1947 - 0.301489
recA RT0747 recombinase ARecName: Full=Protein RecA; AltName: Full=Recombinase A; chromosome CDS951749 1023 + 0.358749
recF RT0100 DNA replication and repair protein RecFRecName: Full=DNA replication and repair protein RecF; chromosome CDS134379 1083 + 0.283472
recG RT0582 ATP-dependent DNA helicase RecGSubName: Full=ATP-dependent DNA helicase RecG; EC=3.6.1.-; chromosome CDS750897 2112 - 0.309186
recJ RT0515 single-stranded-DNA-specific exonuclease RecJSubName: Full=Single-stranded-DNA-specific exonuclease RecJ; EC=3.1.-.-; chromosome CDS655603 1761 - 0.315162
recN RT0173 DNA repair protein RecNRecName: Full=DNA repair protein RecN; AltName: Full=Recombination protein N; chromosome CDS218612 1665 - 0.293093
recR RT0425 recombination protein RecRRecName: Full=Recombination protein RecR; chromosome CDS534807 600 + 0.326667
rhlE RT0661 probable ATP-dependent RNA helicase RhlESubName: Full=Probable ATP-dependent RNA helicase RhlE; chromosome CDS837222 1224 - 0.329248
rnhA RT0713 ribonuclease HRecName: Full=Ribonuclease H; Short=RNase H; EC=3.1.26.4; chromosome CDS909165 459 - 0.346405
rnhB RT0192 ribonuclease HIIRecName: Full=Ribonuclease HII; Short=RNase HII; EC=3.1.26.4; chromosome CDS243899 582 + 0.30756
ruvA RT0374 Holliday junction DNA helicase RuvARecName: Full=Holliday junction ATP-dependent DNA helicase RuvA; EC=3.6.4.12; chromosome CDS474407 603 + 0.296849
ruvB RT0375 Holliday junction DNA helicase RuvBRecName: Full=Holliday junction ATP-dependent DNA helicase RuvB; EC=3.6.4.12; chromosome CDS475073 1029 + 0.333333
ruvC RT0017 crossover junction endodeoxyribonuclease RuvC (Holliday junction DNA nuclease RuvC)RecName: Full=Crossover junction endodeoxyribonuclease RuvC; EC=3.1.22.4; AltName: Full=Holliday junction nuclease RuvC; AltName: Full=Holliday junction resolvase RuvC; chromosome CDS19633 474 - 0.316456
sca2 RT0052 190 kDa antigen precursorSubName: Full=190 kDa antigen; chromosome CDS68152 4452 + 0.294924
topA RT0317 DNA topoisomerase IRecName: Full=DNA topoisomerase 1; EC=5.99.1.2; AltName: Full=DNA topoisomerase I; AltName: Full=Omega-protein; AltName: Full=Relaxing enzyme; AltName: Full=Swivelase; AltName: Full=Untwisting enzyme; chromosome CDS400985 2340 - 0.308974
uvrA RT0823 excinuclease ABC subunit ARecName: Full=UvrABC system protein A; Short=UvrA protein; AltName: Full=Excinuclease ABC subunit A; chromosome CDS1048328 2862 - 0.330887
uvrB RT0193 excinuclease ABC subunit BRecName: Full=UvrABC system protein B; Short=Protein UvrB; AltName: Full=Excinuclease ABC subunit B; chromosome CDS244545 1989 - 0.328306
uvrC RT0560 excinuclease ABC subunit CRecName: Full=UvrABC system protein C; Short=Protein UvrC; AltName: Full=Excinuclease ABC subunit C; chromosome CDS724994 1881 - 0.310473
uvrD RT0434 DNA helicase IIRecName: Full=DNA helicase II; EC=3.6.4.12; chromosome CDS547599 1977 + 0.309054
xerC RT0805 DNA integrase/recombinase XerCRecName: Full=Tyrosine recombinase XerC; chromosome CDS1025338 918 - 0.287582
xerD RT0350 integrase/recombinaseRecName: Full=Tyrosine recombinase XerC; chromosome CDS441132 894 + 0.300895
xseA RT0669 exodeoxyribonuclease VII large subunitRecName: Full=Exodeoxyribonuclease 7 large subunit; EC=3.1.11.6; AltName: Full=Exodeoxyribonuclease VII large subunit; Short=Exonuclease VII large subunit; chromosome CDS846873 1362 + 0.312775
xseB RT0339 exodeoxyribonuclease VII small subunitRecName: Full=Exodeoxyribonuclease 7 small subunit; EC=3.1.11.6; AltName: Full=Exodeoxyribonuclease VII small subunit; Short=Exonuclease VII small subunit; chromosome CDS432809 243 + 0.283951
xthA1 RT0251 exodeoxyribonuclease IIISubName: Full=E.coli exonuclease III; EC=3.1.11.2; chromosome CDS318271 786 + 0.302799
xthA2 RT0671 exodeoxyribonuclease IIISubName: Full=E.coli exonuclease III; EC=3.1.11.2; chromosome CDS849816 813 + 0.274293