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2024-05-01 21:45:35

Gene list

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COG category: Replication, recombination and repair
Organism: Rickettsia typhi str. Wilmington, Wilmington

Number of genes found: 75

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Rickettsia typhi str. Wilmington, Wilmington
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA RT0099 rickettsial conserved hypothetical proteinchromosome CDS131548 660 + 0.292424
NA RT0536 possible RecO-like recombinational DNA repair proteinchromosome CDS684741 711 + 0.247539
NA RT0677 conserved hypothetical proteinchromosome CDS857371 882 - 0.301587
NA RT0833 DNA polymerase, bacteriophage-typechromosome CDS1064453 777 - 0.311454
NA RT0696 rickettsial conserved hypothetical proteinchromosome CDS882896 951 + 0.254469
NA RT0533 probable methylasechromosome CDS682218 711 + 0.291139
NA RT0286 rickettsial conserved hypothetical proteinchromosome CDS362555 888 + 0.226351
NA RT0824 single-strand binding proteinchromosome CDS1051295 459 + 0.318083
NA RT0223 rickettsial conserved hypothetical proteinchromosome CDS288306 663 + 0.248869
NA RT0733 rickettsial conserved hypothetical proteinchromosome CDS933749 1116 + 0.293011
NA RT0496 rickettsial conserved hypothetical proteinchromosome CDS633560 2862 - 0.251572
NA RT0321 possible Holliday junction resolvasechromosome CDS408107 471 + 0.312102
NA RT0011 conserved hypothetical proteinchromosome CDS10275 1074 + 0.265363
NA RT0179 conserved hypothetical proteinchromosome CDS227799 966 + 0.254658
NA RT0623 rickettsial conserved hypothetical proteinchromosome CDS813926 234 - 0.25641
NA RT0842 rickettsial conserved hypothetical proteinchromosome CDS1074435 966 - 0.252588
NA RT0391 conserved hypothetical proteinchromosome CDS492156 2595 - 0.25395
NA RT0719 ATP-dependent helicase/nucleasechromosome CDS913839 2472 + 0.284385
NA RT0135 rickettsial conserved hypothetical proteinchromosome CDS175887 2124 - 0.310734
NA RT0269 rickettsial conserved hypothetical proteinchromosome CDS338385 1143 - 0.300962
NA RT0622 conserved hypothetical proteinchromosome CDS812539 666 + 0.234234
NA RT0352 rickettsial conserved hypothetical proteinchromosome CDS443221 1164 + 0.273196
NA RT0844 rickettsial conserved hypothetical proteinchromosome CDS1076211 1563 - 0.225208
NA RT0215 rickettsial conserved hypothetical proteinchromosome CDS276935 1197 - 0.25731
NA RT0552 rickettsial conserved hypothetical proteinchromosome CDS714652 966 - 0.278468
dnaA RT0589 chromosomal replication initiator protein DnaAchromosome CDS762664 1392 + 0.324713
dnaB RT0531 replicative DNA helicasechromosome CDS678118 1494 + 0.312584
dnaE RT0765 DNA-directed DNA polymerase III alpha subunitchromosome CDS970720 3543 - 0.322326
dnaG RT0848 DNA primasechromosome CDS1084703 1782 - 0.273288
dnaN RT0405 DNA-directed DNA polymerase III beta subunitchromosome CDS516585 1146 + 0.291449
dnaQ RT0718 DNA-directed DNA polymerase III epsilon subunitchromosome CDS912298 690 + 0.317391
dnaX RT0855 DNA-directed DNA polymerase III gamma subunitchromosome CDS1090425 1203 + 0.282627
dnaX RT0856 DNA-directed DNA polymerase III tau subunitchromosome CDS1090425 1526 + 0.271953
gyrA RT0196 DNA topoisomerase II subunit A (DNA gyrase subunit A)chromosome CDS250064 2718 + 0.348418
gyrB RT0569 DNA topoisomerase II subunit B (DNA gyrase subunit B)chromosome CDS736101 2424 - 0.334571
holB RT0163 DNA-directed DNA polymerase III delta prime subunitchromosome CDS203347 795 + 0.244025
holC RT0863 probable DNA-directed DNA polymerase III chi subunit HolCchromosome CDS1097315 465 - 0.266667
hupA RT0162 DNA-binding protein HUchromosome CDS202937 300 + 0.32
ihfA RT0703 integration host factor alpha subunitchromosome CDS896923 288 - 0.253472
ihfB RT0511 integration host factor beta subunitchromosome CDS651272 243 - 0.238683
lig RT0706 DNA ligase (NAD+)chromosome CDS901463 2082 - 0.322767
mfd RT0586 transcription-repair coupling factor (superfamily helicase II)chromosome CDS758439 3363 - 0.290217
mpg RT0340 DNA-3-methyladenine glycosylase Ichromosome CDS434028 672 - 0.315476
mutL RT0871 DNA mismatch repair protein MutLchromosome CDS1102840 1803 - 0.302274
mutS RT0289 DNA mismatch repair protein MutSchromosome CDS365136 2676 - 0.306054
nth RT0731 DNA-(apurinic or apyrimidinic site) lyase/endonuclease IIIchromosome CDS931314 639 + 0.306729
nudH RT0228 dinucleoside polyphosphate hydrolase, invasion protein Achromosome CDS292889 486 - 0.323045
parC RT0065 DNA topoisomerase IV subunit Achromosome CDS84353 2214 - 0.324752
parE RT0219 DNA topoisomerase IV subunit Bchromosome CDS282215 1992 + 0.310743
polA RT0763 DNA-directed DNA polymerase Ichromosome CDS965142 2619 + 0.298969
priA RT0529 primosomal protein N primechromosome CDS674309 1947 - 0.301489
recA RT0747 recombinase Achromosome CDS951749 1023 + 0.358749
recF RT0100 DNA replication and repair protein RecFchromosome CDS134379 1083 + 0.283472
recG RT0582 ATP-dependent DNA helicase RecGchromosome CDS750897 2112 - 0.309186
recJ RT0515 single-stranded-DNA-specific exonuclease RecJchromosome CDS655603 1761 - 0.315162
recN RT0173 DNA repair protein RecNchromosome CDS218612 1665 - 0.293093
recR RT0425 recombination protein RecRchromosome CDS534807 600 + 0.326667
rhlE RT0661 probable ATP-dependent RNA helicase RhlEchromosome CDS837222 1224 - 0.329248
rnhA RT0713 ribonuclease Hchromosome CDS909165 459 - 0.346405
rnhB RT0192 ribonuclease HIIchromosome CDS243899 582 + 0.30756
ruvA RT0374 Holliday junction DNA helicase RuvAchromosome CDS474407 603 + 0.296849
ruvB RT0375 Holliday junction DNA helicase RuvBchromosome CDS475073 1029 + 0.333333
ruvC RT0017 crossover junction endodeoxyribonuclease RuvC (Holliday junction DNA nuclease RuvC)chromosome CDS19633 474 - 0.316456
sca2 RT0052 190 kDa antigen precursorchromosome CDS68152 4452 + 0.294924
topA RT0317 DNA topoisomerase Ichromosome CDS400985 2340 - 0.308974
uvrA RT0823 excinuclease ABC subunit Achromosome CDS1048328 2862 - 0.330887
uvrB RT0193 excinuclease ABC subunit Bchromosome CDS244545 1989 - 0.328306
uvrC RT0560 excinuclease ABC subunit Cchromosome CDS724994 1881 - 0.310473
uvrD RT0434 DNA helicase IIchromosome CDS547599 1977 + 0.309054
xerC RT0805 DNA integrase/recombinase XerCchromosome CDS1025338 918 - 0.287582
xerD RT0350 integrase/recombinasechromosome CDS441132 894 + 0.300895
xseA RT0669 exodeoxyribonuclease VII large subunitchromosome CDS846873 1362 + 0.312775
xseB RT0339 exodeoxyribonuclease VII small subunitchromosome CDS432809 243 + 0.283951
xthA1 RT0251 exodeoxyribonuclease IIIchromosome CDS318271 786 + 0.302799
xthA2 RT0671 exodeoxyribonuclease IIIchromosome CDS849816 813 + 0.274293