Gene list
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COG category: Replication, recombination and repair
Organism: Geobacter sulfurreducens PCA, PCA
Number of genes found: 171
Show UniProt / TrEMBL protein name | View in Fasta format (DNA) | View in Fasta format (Protein) | ||||
Geobacter sulfurreducens PCA, PCA | ||||||||
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Name | Locus tag | Product / Description | Genomic element | Type | Begin | Length | Strand | GC-content |
NA | GSU1450 | endonuclease III, putative | chromosome | CDS | 1587992 | 630 | + | 0.574603 |
NA | GSU3411 | ATP-dependent DNA helicase PcrA, putative | chromosome | CDS | 3752116 | 2220 | - | 0.65045 |
NA | GSU1355 | ISGsu7, transposase OrfA | chromosome | CDS | 1480115 | 363 | + | 0.561983 |
NA | GSU2471 | group II intron, maturase | chromosome | CDS | 2709108 | 1305 | - | 0.608429 |
NA | GSU2758 | excinuclease ABC family protein | chromosome | CDS | 3033064 | 5568 | - | 0.698815 |
NA | GSU1365 | Mrr restriction system protein, putative | chromosome | CDS | 1494206 | 1047 | + | 0.510984 |
NA | GSU0763 | helicase, putative | chromosome | CDS | 815366 | 2724 | - | 0.559838 |
NA | GSU0492 | site-specific recombinase, phage integrase family | chromosome | CDS | 524995 | 885 | - | 0.635028 |
NA | GSU0955 | group II intron, maturase | chromosome | CDS | 1029182 | 1305 | + | 0.608429 |
NA | GSU2280 | ISGsu7, transposase OrfA | chromosome | CDS | 2496649 | 363 | - | 0.561983 |
NA | GSU2829 | deoxyribodipyrimidine photolyase, putative | chromosome | CDS | 3112696 | 1386 | - | 0.590188 |
NA | GSU3354 | mutT/nudix family protein | chromosome | CDS | 3684928 | 522 | - | 0.653257 |
NA | GSU2141 | ISGsu1, transposase, interruption | chromosome | CDS | 2357866 | 1089 | - | 0.513315 |
NA | GSU0064 | integrative genetic element Gsu32, integrase | chromosome | CDS | 79725 | 1320 | - | 0.55 |
NA | GSU0512 | conserved hypothetical protein | chromosome | CDS | 545697 | 1641 | + | 0.609385 |
NA | GSU2599 | ISGsu4, transposase | chromosome | CDS | 2865265 | 1047 | - | 0.51767 |
NA | GSU2118 | integrative genetic element Gsu21, integrase | chromosome | CDS | 2335994 | 1341 | + | 0.574198 |
NA | GSU2397 | conserved hypothetical protein | chromosome | CDS | 2630204 | 216 | + | 0.513889 |
NA | GSU0552 | conserved domain protein | chromosome | CDS | 584623 | 1539 | + | 0.497726 |
NA | GSU0058 | CRISPR-associated protein Cas2, putative | chromosome | CDS | 74314 | 288 | + | 0.524306 |
NA | GSU1712 | hypothetical protein | chromosome | CDS | 1877822 | 252 | + | 0.484127 |
NA | GSU0227 | type II DNA modification methyltransferase, putative | chromosome | CDS | 234575 | 918 | + | 0.694989 |
NA | GSU1724 | nuclease SbcCD, D subunit, putative | chromosome | CDS | 1888023 | 1257 | + | 0.611774 |
NA | GSU2171 | ISGsu7, transposase OrfB | chromosome | CDS | 2383423 | 891 | + | 0.567901 |
NA | GSU1078 | chromosomal replication initiator protein DnaA, truncation | chromosome | CDS | 1166019 | 777 | + | 0.615187 |
NA | GSU0133 | hypothetical protein | chromosome | CDS | 147502 | 1167 | + | 0.622965 |
NA | GSU3287 | hydrolase, TatD family | chromosome | CDS | 3606699 | 777 | + | 0.662806 |
NA | GSU2170 | ISGsu7, transposase OrfA | chromosome | CDS | 2383064 | 363 | + | 0.561983 |
NA | GSU1126 | phage SPO1 DNA polymerase-related protein | chromosome | CDS | 1210532 | 708 | + | 0.665254 |
NA | GSU2279 | ISGsu7, transposase OrfB | chromosome | CDS | 2495762 | 891 | - | 0.567901 |
NA | GSU2597 | ISGsu2, transposase | chromosome | CDS | 2863246 | 1086 | - | 0.553407 |
NA | GSU0559 | ISGsu2, transposase | chromosome | CDS | 590955 | 1086 | + | 0.553407 |
NA | GSU1173 | methylated-DNA-protein-cysteine methyltransferase, putative | chromosome | CDS | 1278520 | 549 | + | 0.652095 |
NA | GSU0762 | ISGsu7, transposase OrfA | chromosome | CDS | 814678 | 363 | - | 0.561983 |
NA | GSU1244 | methyltransferase, putative | chromosome | CDS | 1345954 | 564 | - | 0.643617 |
NA | GSU0723 | conserved hypothetical protein | chromosome | CDS | 772183 | 558 | + | 0.616487 |
NA | GSU2128 | ISGsu7, transposase OrfB | chromosome | CDS | 2346551 | 891 | + | 0.567901 |
NA | GSU3083 | ISGsu7, transposase OrfB | chromosome | CDS | 3389005 | 891 | + | 0.567901 |
NA | GSU1822 | DNA mismatch repair protein MutS | chromosome | CDS | 1989919 | 2616 | - | 0.604358 |
NA | GSU1541 | conserved hypothetical protein | chromosome | CDS | 1695669 | 804 | + | 0.532338 |
NA | GSU0043 | ImpB/MucB/SamB family protein | chromosome | CDS | 52000 | 1242 | + | 0.63124 |
NA | GSU2593 | ISGsu6, transposase OrfA | chromosome | CDS | 2858365 | 1026 | + | 0.587719 |
NA | GSU2594 | ISGsu6, transposase OrfB | chromosome | CDS | 2859387 | 795 | + | 0.58239 |
NA | GSU2175 | trfA-related protein | chromosome | CDS | 2385731 | 840 | + | 0.533333 |
NA | GSU3035 | hypothetical protein | chromosome | CDS | 3342011 | 423 | - | 0.605201 |
NA | GSU2139 | ISGsu7, transposase OrfA | chromosome | CDS | 2356638 | 363 | + | 0.561983 |
NA | GSU1297 | ISGsu2, transposase | chromosome | CDS | 1416989 | 1086 | + | 0.553407 |
NA | GSU0081 | hypothetical protein | chromosome | CDS | 93366 | 264 | + | 0.613636 |
NA | GSU2467 | hypothetical protein/integrase, fusion | chromosome | CDS | 2705340 | 1374 | - | 0.558952 |
NA | GSU2168 | DNA repair protein RadC | chromosome | CDS | 2382140 | 492 | + | 0.556911 |
NA | GSU3266 | DNA helicase II, putative | chromosome | CDS | 3581843 | 3237 | - | 0.67439 |
NA | GSU2561 | conserved domain protein | chromosome | CDS | 2824228 | 525 | - | 0.657143 |
NA | GSU2391 | ISGsu7, transposase OrfB | chromosome | CDS | 2623517 | 891 | - | 0.567901 |
NA | GSU3245 | DNA polymerase II, putative | chromosome | CDS | 3557188 | 2238 | - | 0.643878 |
NA | GSU1363 | RNA-directed DNA polymerase | chromosome | CDS | 1491977 | 1143 | + | 0.381452 |
NA | GSU2140 | ISGsu7, transposase OrfB | chromosome | CDS | 2356997 | 891 | + | 0.567901 |
NA | GSU0954 | conserved hypothetical protein | chromosome | CDS | 1027076 | 981 | - | 0.557594 |
NA | GSU0167 | conserved hypothetical protein, truncation | chromosome | CDS | 183332 | 306 | + | 0.591503 |
NA | GSU1359 | helicase, putative | chromosome | CDS | 1484238 | 3126 | + | 0.626999 |
NA | GSU3375 | mutT/nudix family protein | chromosome | CDS | 3709465 | 516 | + | 0.622093 |
NA | GSU0761 | ISGsu7, transposase OrfB | chromosome | CDS | 813791 | 891 | - | 0.567901 |
NA | GSU3086 | conserved hypothetical protein | chromosome | CDS | 3391779 | 1176 | - | 0.638605 |
NA | GSU0046 | ISGsu6, transposase OrfA | chromosome | CDS | 61246 | 1026 | + | 0.587719 |
NA | GSU3244 | hypothetical protein | chromosome | CDS | 3556672 | 417 | - | 0.618705 |
NA | GSU1383 | exonuclease | chromosome | CDS | 1511698 | 546 | + | 0.6337 |
NA | GSU0712 | hypothetical protein | chromosome | CDS | 760735 | 504 | - | 0.605159 |
NA | GSU0990 | hypothetical protein | chromosome | CDS | 1067946 | 1887 | + | 0.645469 |
NA | GSU1725 | nuclease SbcCD, C subunit, putative | chromosome | CDS | 1889279 | 2442 | + | 0.602785 |
NA | GSU2119 | integrative genetic element Gsu56, integrase | chromosome | CDS | 2337618 | 1362 | + | 0.475037 |
NA | GSU3159 | mutT/nudix family protein | chromosome | CDS | 3466266 | 555 | + | 0.69009 |
NA | GSU2771 | conserved hypothetical protein | chromosome | CDS | 3051489 | 957 | - | 0.545455 |
NA | GSU2772 | ISGsu3, transposase | chromosome | CDS | 3052662 | 1089 | - | 0.549128 |
NA | GSU3345 | hypothetical protein | chromosome | CDS | 3674668 | 369 | + | 0.636856 |
NA | GSU2489 | deoxyribonuclease, TatD family | chromosome | CDS | 2733951 | 1389 | + | 0.672426 |
NA | GSU1199 | nuclease, putative | chromosome | CDS | 1302927 | 564 | + | 0.634752 |
NA | GSU2591 | ISGsu5, transposase | chromosome | CDS | 2855722 | 783 | + | 0.54023 |
NA | GSU1711 | integrative genetic element Gsu5, resolvase | chromosome | CDS | 1876910 | 573 | - | 0.556719 |
NA | GSU2392 | ISGsu7, transposase OrfA | chromosome | CDS | 2624404 | 363 | - | 0.561983 |
NA | GSU1223 | hypothetical protein | chromosome | CDS | 1327300 | 840 | + | 0.62619 |
NA | GSU1044 | mutT/nudix family protein | chromosome | CDS | 1132163 | 945 | + | 0.658201 |
NA | GSU1392 | CRISPR-associated protein Cas1 | chromosome | CDS | 1520569 | 921 | + | 0.634093 |
NA | GSU1544 | hypothetical protein | chromosome | CDS | 1697206 | 447 | + | 0.63311 |
NA | GSU2207 | DNA polymerase III, delta subunit, putative | chromosome | CDS | 2421378 | 1014 | - | 0.606509 |
NA | GSU1421 | nuclease SbcCD, D subunit, putative | chromosome | CDS | 1557739 | 1131 | + | 0.625995 |
NA | GSU2180 | ISGsu1, transposase | chromosome | CDS | 2389747 | 1119 | - | 0.510277 |
NA | GSU0047 | ISGsu6, transposase OrfB | chromosome | CDS | 62268 | 795 | + | 0.58239 |
NA | GSU0547 | MutS2 family protein | chromosome | CDS | 579087 | 2379 | + | 0.684321 |
NA | GSU0695 | hypothetical protein | chromosome | CDS | 735097 | 720 | - | 0.647222 |
NA | GSU0650 | conserved hypothetical protein TIGR00252 | chromosome | CDS | 681407 | 387 | + | 0.591731 |
NA | GSU0252 | ISGsu1, transposase | chromosome | CDS | 259068 | 1119 | + | 0.510277 |
NA | GSU1356 | ISGsu7, transposase OrfB | chromosome | CDS | 1480474 | 891 | + | 0.567901 |
NA | GSU0556 | ISGsu7, transposase OrfB | chromosome | CDS | 589398 | 891 | + | 0.567901 |
NA | GSU0057 | CRISPR-associated protein Cas1/Cas4 | chromosome | CDS | 72630 | 1680 | + | 0.635119 |
NA | GSU1613 | A/G-specific adenine glycosylase, putative | chromosome | CDS | 1766767 | 858 | - | 0.607226 |
NA | GSU0048 | integrase | chromosome | CDS | 63072 | 837 | + | 0.584229 |
NA | GSU3082 | ISGsu7, transposase OrfA | chromosome | CDS | 3388646 | 363 | + | 0.561983 |
NA | GSU0957 | ISGsu1, transposase | chromosome | CDS | 1031690 | 1119 | - | 0.510277 |
NA | GSU1848 | ISGsu7, transposase OrfB | chromosome | CDS | 2018633 | 891 | + | 0.567901 |
NA | GSU2127 | ISGsu7, transposase OrfA | chromosome | CDS | 2346192 | 363 | + | 0.561983 |
NA | GSU1847 | ISGsu7, transposase OrfA | chromosome | CDS | 2018274 | 363 | + | 0.561983 |
NA | GSU0564 | conserved hypothetical protein | chromosome | CDS | 595484 | 1224 | + | 0.433824 |
NA | GSU3084 | hypothetical protein | chromosome | CDS | 3389874 | 462 | - | 0.564935 |
NA | GSU1797 | ComEA-related protein | chromosome | CDS | 1963098 | 570 | - | 0.519298 |
NA | GSU0961 | ISGsu4, transposase | chromosome | CDS | 1034609 | 1047 | - | 0.51767 |
NA | GSU1616 | ImpB/MucB/SamB family protein | chromosome | CDS | 1769602 | 1230 | - | 0.545528 |
NA | GSU0524 | conserved hypothetical protein | chromosome | CDS | 558887 | 708 | - | 0.658192 |
NA | GSU2067 | ATPase, AAA family | chromosome | CDS | 2268975 | 1323 | + | 0.610733 |
NA | GSU0299 | ISGsu1, transposase | chromosome | CDS | 328610 | 1119 | - | 0.510277 |
NA | GSU0555 | ISGsu7, transposase OrfA | chromosome | CDS | 589039 | 363 | + | 0.561983 |
NA | GSU3377 | helix-hairpin-helix domain protein | chromosome | CDS | 3710946 | 687 | - | 0.622999 |
NA | GSU1021 | hypothetical protein | chromosome | CDS | 1101667 | 654 | - | 0.637615 |
NA | GSU1422 | nuclease SbcCD, C subunit, putative | chromosome | CDS | 1558869 | 2175 | + | 0.631724 |
NA | GSU2164 | hypothetical protein | chromosome | CDS | 2377156 | 3357 | + | 0.569556 |
NA | GSU2396 | conserved hypothetical protein | chromosome | CDS | 2629392 | 663 | + | 0.529412 |
dbpA | GSU0189 | ATP-dependent RNA helicase DbpA | chromosome | CDS | 201957 | 1383 | + | 0.63919 |
dinG | GSU0363 | ATP-dependent helicase DinG | chromosome | CDS | 394457 | 2523 | - | 0.653983 |
dnaA | GSU0000.1 | chromosomal replication initiator protein DnaA | chromosome | CDS | 30 | 1338 | + | 0.543348 |
dnaB | GSU0998 | replicative DNA helicase | chromosome | CDS | 1077822 | 1371 | + | 0.61415 |
dnaE | GSU1401 | DNA polymerase III, alpha subunit | chromosome | CDS | 1540372 | 3468 | + | 0.638697 |
dnaG | GSU3090 | DNA primase | chromosome | CDS | 3396176 | 1764 | - | 0.618481 |
dnaN | GSU0001 | DNA polymerase III, beta subunit | chromosome | CDS | 1594 | 1119 | + | 0.563896 |
dnaX | GSU0094 | DNA polymerase III, gamma and tau subunits | chromosome | CDS | 106783 | 1740 | + | 0.635057 |
drpA | GSU2550 | DNA processing protein DprA | chromosome | CDS | 2812608 | 1071 | - | 0.681606 |
gyrA | GSU0004 | DNA gyrase, A subunit | chromosome | CDS | 6417 | 2574 | + | 0.625486 |
gyrB | GSU0003 | DNA gyrase, B subunit | chromosome | CDS | 3901 | 2388 | + | 0.613065 |
holB | GSU2230 | DNA polymerase III, delta prime subunit | chromosome | CDS | 2445628 | 972 | + | 0.662551 |
hrpB | GSU1838 | ATP-dependent helicase HrpB | chromosome | CDS | 2003813 | 2541 | - | 0.677292 |
huP-1 | GSU2602 | DNA-binding protein HU | chromosome | CDS | 2869900 | 291 | - | 0.587629 |
huP-2 | GSU3132 | DNA-binding protein HU | chromosome | CDS | 3435206 | 285 | - | 0.614035 |
ihfA-1 | GSU1521 | integration host factor, alpha subunit | chromosome | CDS | 1668933 | 276 | + | 0.507246 |
ihfA-2 | GSU2120 | integration host factor, alpha subunit | chromosome | CDS | 2339126 | 276 | + | 0.413043 |
ihfB | GSU1746 | integration host factor, beta subunit | chromosome | CDS | 1911413 | 279 | - | 0.505376 |
ligA | GSU0890 | DNA ligase, NAD-dependent | chromosome | CDS | 949753 | 2013 | - | 0.670144 |
mfd | GSU0017 | transcription-repair coupling factor | chromosome | CDS | 25356 | 3474 | - | 0.645941 |
mutL | GSU2001 | DNA mismatch repair protein MutL | chromosome | CDS | 2192669 | 1821 | - | 0.655135 |
mutM | GSU0997 | formamidopyrimidine-DNA glycosylase | chromosome | CDS | 1076875 | 816 | - | 0.667892 |
mutT | GSU0870 | mutator mutT protein | chromosome | CDS | 926968 | 414 | + | 0.637681 |
nfo | GSU0529 | endonuclease IV | chromosome | CDS | 563536 | 891 | - | 0.64422 |
polA | GSU0541 | DNA polymerase I | chromosome | CDS | 572574 | 2676 | + | 0.665172 |
priA | GSU0128 | primosomal protein n` | chromosome | CDS | 141993 | 2256 | + | 0.673759 |
radC | GSU0386 | DNA repair protein RadC | chromosome | CDS | 418326 | 690 | - | 0.637681 |
recA | GSU0145 | recA protein | chromosome | CDS | 161049 | 1017 | + | 0.629302 |
recB | GSU1534 | exodeoxyribonuclease V, beta subunit | chromosome | CDS | 1683437 | 3615 | + | 0.711757 |
recC | GSU1533 | exodeoxyribonuclease V, gamma subunit | chromosome | CDS | 1680246 | 3195 | + | 0.704225 |
recD | GSU1535 | exodeoxyribonuclease V, alpha subunit | chromosome | CDS | 1687048 | 1788 | + | 0.697427 |
recF | GSU0002 | recF protein | chromosome | CDS | 2793 | 1098 | + | 0.612933 |
recG | GSU1326 | ATP-dependent DNA helicase RecG | chromosome | CDS | 1450443 | 2145 | + | 0.682517 |
recJ | GSU2614 | single-stranded-DNA-specific exonuclease RecJ | chromosome | CDS | 2883767 | 1737 | - | 0.679908 |
recN | GSU2064 | DNA repair protein RecN | chromosome | CDS | 2263755 | 1677 | - | 0.658318 |
recO | GSU0577 | DNA repair protein RecO | chromosome | CDS | 606305 | 732 | + | 0.70082 |
recQ | GSU0898 | ATP-dependent DNA helicase RecQ | chromosome | CDS | 963031 | 1812 | + | 0.684879 |
recR | GSU0096 | recombination protein RecR | chromosome | CDS | 109096 | 594 | + | 0.626263 |
rhlB | GSU0522 | ATP-dependent RNA helicase RhlB | chromosome | CDS | 555700 | 1332 | + | 0.638889 |
rhlE-1 | GSU0491 | ATP-dependent RNA helicase RhlE | chromosome | CDS | 523215 | 1353 | - | 0.644494 |
rhlE-2 | GSU0914 | ATP-dependent RNA helicase RhlE | chromosome | CDS | 980161 | 1344 | + | 0.6875 |
rnhA | GSU2071 | ribonuclease HI | chromosome | CDS | 2272223 | 450 | - | 0.626667 |
rnhB | GSU0649 | ribonuclease HII | chromosome | CDS | 680763 | 654 | + | 0.620795 |
ruvA | GSU1076 | Holliday junction DNA helicase RuvA | chromosome | CDS | 1164434 | 600 | + | 0.6 |
ruvB | GSU1077 | Holliday junction DNA helicase RuvB | chromosome | CDS | 1165037 | 1017 | + | 0.631268 |
ruvC | GSU1075 | crossover junction endodeoxyribonuclease RuvC | chromosome | CDS | 1163943 | 495 | + | 0.620202 |
ssb-1 | GSU2151 | single-strand binding protein | chromosome | CDS | 2368214 | 420 | + | 0.533333 |
ssb-2 | GSU3117 | single-strand binding protein | chromosome | CDS | 3419688 | 441 | + | 0.643991 |
tag | GSU0567 | DNA-3-methyladenine glycosylase I | chromosome | CDS | 597360 | 576 | + | 0.659722 |
topA | GSU2549 | DNA topoisomerase I | chromosome | CDS | 2810320 | 2274 | - | 0.62533 |
uvrA | GSU3325 | excinuclease ABC, A subunit | chromosome | CDS | 3652846 | 2814 | + | 0.630419 |
uvrB | GSU3262 | excinuclease ABC, B subunit | chromosome | CDS | 3577166 | 1995 | + | 0.627569 |
uvrC | GSU3279 | excinuclease ABC, C subunit | chromosome | CDS | 3598194 | 1842 | + | 0.616721 |
xerD | GSU1819 | integrase/recombinase XerD | chromosome | CDS | 1984912 | 888 | - | 0.602477 |
xseA | GSU1767 | exodeoxyribonuclease VII, large subunit | chromosome | CDS | 1929198 | 1344 | - | 0.62128 |
xseB | GSU1766 | exodeoxyribonuclease VII, small subunit | chromosome | CDS | 1928901 | 231 | - | 0.510823 |
xth | GSU1539 | exodeoxyribonuclease III | chromosome | CDS | 1692893 | 816 | + | 0.676471 |