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# Haemophilus ducreyi 35000HP, 35000HP

>HD0432 hypothetical protein
MLSGKSSVMNWLTKYYLYPNSFVFSMAEFMEKHLKWILISLVIFILSYPI
TAYVKHYQQAVELQQEKAKLFNQLTQYKKLYHSIKEHNQQLQLQDSQISH
INQQLQTVLDSEKMKLAQIQWSLDSGKVVYLSASQQVKPVFNFIEKINQL
GYLKFKELELIKQNENNLLQINATLLVKGE
>HD0650 conserved hypothetical protein
MNILKKLAFILFICTLSGNLLAKDTTAVRQAVVEKNSAVKIPTDTNSTTM
AHKAQLVNINTASAAEIQEKLTGIGEKKAQAIVDYRTKNGNFTHIDQITA
VSGIGKATLEKNHDRIILE
>HD0291 possible transposase
MAQHFLLNSKAKTLSTLQIARLSDEQAFDLLCDMRWGSKQHVTCPKCGVQ
HQAYFIASHKQWRCKHCHHTFSVTSGTIFANRKASIQTYLYVLARFVNAV
KGVSALEISRDAKINYRTAFVLCHKLRKALLENRDMHPLSGEVDMDGTYV
HPAPP
>HD1529 hypothetical protein
MEEGEFYKNKPANVAKVEPQRVWRYVITDHTSGVIYVEYVYGGETAENVS
QCFINAIQPKANKAEPFFGVPKILMFDRGTANTSQMFSHLLHQLDVKVEI
PKAKNARAKGQVEKGNDIVERQFESGLRFMNVSGLDELNQLAHQWMRYFN
GKMVHSRHGRTRYQMWQFIRPEQLIMPPSREICQELMITALSERVVSDKL
EISFESRRYDVRDVPDAKVGEKITVGKNPYRPECVQVQCFERVVDEDGSE
NLKPYWVVVEPVEVNEYGFRVDAAMIGEEYKAHKKTEFETHKEQAEQLAY
GVTNEDDLKRAKKVNKPLFNGEINPYKHIEETNLNWFVPKKGQDHELTTN
ARRVEQKPVNLVECAKQLKERFPEWNGKHYKNLAKHFSEGVPITTLEDWL
QGNKLPEVLNPETKILQLNAA
>HD1616 possible transposase
MAQHFRLSTAARQLSSDSLVCLPDAEIFQRLKQARWGNADNFVCPHCHIR
HLAYFISTRKQWQCKHCQHRFSITAGTIFQGAKLPLRKILLAILYFATES
KGLSAIALSHKLNVQYKTAWVLLHKFRESLDKAKDLTPLNGEVHIDGAYT
NYYIRPKNFRHKRIDRRKKRYQRADKSCVLVFRQRAANQAVMKGADRSIV
ALVKEENTKDVLELTQRLVKPNSTIHADENPAYDCLAFHYDLWRVNHSQE
YRSIEGITNNLAESFFARLRRAITGIYHKMSNKYLMYYANEMVWREDHRR
KSVKEKFEQLLTCCLNTLPSRDFTGYWQGNKKGEAVFGLASLTASNDLHY
LKAA
>HD1532 hypothetical protein
MSELTLSQEQNAVALAAKAMTQDLAEAHEAMGMIKAFTFVGKLATVATLK
KLAEVKEARNYKGLQYVNADGELATVASWEEFCTACGTSRRKVDEDLQNL
NQFGEEFMETSQRLGLGYREMRKLRQLPEEARAEIVDADYSETTDKEDLI
EKIEDLTAKHAKEKESLTKQLESVKANYDAQAKVIANKDERLNKLDKELA
KKTLLIETQTPDQRGGMLREEAAQISYKAEAILRGQVFQAFEALQTHQEE
HGIDHRQFMSGVLAEYQLILSELKERFNLTDEPTGDNLPEWAKPEYADKP
SVEPSIAAILDEVSDAQIVE
>HD1049 conserved hypothetical protein
MLSSTAIAKWQKINDVDYTWGPFKIYNISLFTETGEYKPQERPIMLTLRY
NKPVDGRDFAISVAKSWANLGIALSEQNVVIERLRKILPDLKSGDALSYI
ALSDHGYFVLNDQVIEQEFNHEFNDAMLAIWLDPKVELSHKLITKKIEGA
AQAVHYSAEYREKVTSSSEDLVSQEQRQQNLPNGTPSEATSLTEQEERED
DEKAPAISDAENDLRHSIDESAPQIVEPEQEIIPNVDPMPDYQLPVS
>HD0905 IstB homolog, C-terminal fragment
MLDLVNQLELDSQMKQFKLVSQMTRQDVIILDEPGYLPFSQKRGALLFHL
MSQLHENTSVIITTNLEFSEWGTLFTEAKMTNALLDRLIHHCHMLETGNE
SYRFKHRN
>HD0802 conserved hypothetical protein
MALWKRLTNRTNRSQGACFEQKARLFLEQQGLKFIQANQHFKCGELDLVM
QQGDTIVFVEVRQRKNNRFGSALESIDYRKQQKWLDAANMWLLTEYNQSL
DTANCRFDVVAFEAEQPPLWIQNFLG
>HD1920 hypothetical protein
MKKIIIVSCLMSGVLNFGYSITTESIPTCSSFLSKLLSTAKSDTLSKVKL
ENCTFEEFKNNYDKDKFPVEFRNNQEEKSFYRHLKERDNYAGISNLYDMW
KWVRFNRGFLEQQNEKLFHVYDKLNEVGINPESLDSMSYLNLKGINENIN
ALTESINPSVEAIKYLLPDFEKYVAAYEKLAKEGDSLSYSDFKKASGRGA
TTANIQQIDQRILHQFRKEMHMNTANTAAMSSLNFGNGYGVSVGAAIGGH
KGQYSLALGTAYTDYQTQVNVKIALPVKQPKPSNITYGVGFVYNFQ
>HD0841 ADP compounds hydrolase, MutT/nudix family
MSKPTLPHILDVKTIAKTRIFEVQSVDLRFSNGEERVYERLTPNRRASVL
VIPIQDNQLIFIKEYAVASERYELSFPKGIVDANEQPIESANRELQEEIG
LAANRLDFLRSLYSGPSHMFSLMHIFVAQDLYKSKLIGDEPEPLSIVRYP
LTEIDTLLADSNFAEARNLAALFMLREFLNQ
>HD1287 probable ATP-dependent helicase
MMKNDKIIHTFSEQGLLSSKIKGFRPRAAQLEMALAVGKAINFATSVVVE
AGTGTGKTFAYLVPALLSGKKTIISTGSKNLQDQLFKRDLPTIQQALKYK
GRVALLKGRANYLCLERLDQVIAMGVVGDRTVLADLEKVRQWQSSTHTGD
LSECTSIAEDSAILPQLVSTTDSCLGAECPQFKECYVVQARRTAMESDVV
VVNHHLFCADMAVKESGFGELIPEAELVIFDEAHQLPDIASQYFGQSLTS
RQLFDLCKDCQTVYRTELKDVAQLGKAAEHLQKVIQDFRLLMGVEGSIRG
NLRELLADQKVVNGLTKIAENIEFLQEVIKKSLGRSETLDKIFERLAEVK
VQLQKLSNTSIVGYCYWYEANGRYFGLHITPLTVADKFGEQLKKQQIGWV
FASATLEVGGQFDHFCQRLGIENAEQIVLPSPFDYANQSLLCVPRYLPDT
NKSHTLTTLGNMLMPVIEANNGRCFLLCTSYSMMRGMADFLREHSQLSVL
LQGETSKARLLAQFITEKNSVLVATQSFWEGIDVRGDALSLVIIDKLPFT
SPDEPLLKARMEDCRLQGGDPFNDIQIPEAVITLKQGVGRLIRDVTDKGV
VIICDARLVMRQYGKTFLESLPPSSRTRDLAKVIQFLKK
>HD0295 hypothetical protein
MAQHFSLSAKARHLSIQVDELSDVEILSLLKTARWGNADNINDIECPHCH
VRHEAYFIKTRQQWQCKHCCYRFSITAGTIFHLAKLSLRKILKALRYFAL
KSKGLSAIELSHEVSTF
>HD1795 conserved hypothetical protein
MATTILAFDFGTYSIGCAVGQSITKTAQSLTAFKSQDGIPNWQHIEKIIK
EWQPDLLVVGLPLNMDGSEQPLTQRARKFANRLNGRFNLPVALQDERLTT
TEAKSEIFSRGGYKALKKDKIDTISACLILESWFDNNP
>HD0897 integrase/recombinase
MKKQYKSYEKAIRQLKKNCKVEYPDDLTVTSLLEWRKNVVDKSISPVTWN
SYIRQLKTIFKFGIEYEILSLEKNPFNKLSVKEGKHRKKIYSPEQLQKLS
CGIQENANIPEYLRPTWFVQTIIMTLRCTAIRRTQLIKLKIKDVDLEKRI
IYIPPEINKNHDYHTLPISNALYPYLTNLLNKLQELKQSTDNQLFNLNLF
SRAVKRRGKPMTADQVSYLFKVISKYTGITSSPHRFRHTAATNLMRNPEN
LYITKQLLGHKDIRVTLSDIEHDIEAVRKYVNSL
>HD0985 converved hypothetical protein
MKKTRNLPKQTKQSGEVRIIAGLWRGRKLSVLNAEGLRPTSDRVKEMLFN
WLMHDVAGCYCLDCFAGSGSLGIEALSRQAKAVVFLEKFANAASVLRNNV
AHLTGANASVINTDTLQYLAQKNTQQPFELVFIDPPFHNNLVPEVIALLE
RNDWLVSKALIYVETEKDHLALQLPANWQLLKEKVTGQVISRLFQRL
>HD0945 conserved possible DNA repair protein
MQLSTQHQDMLNQAKALYENVLRETGIRSYASNPSFGDEKEASEYCQMQL
GFEEREVFGVLFWDTQNRLIRFEKLFFGTINQASIHPREIVKKALELNSS
AVILTHNHPSGQVTPSQSDKQTTAKIKQACQLIDVNVLDHIIVSATDTYS
FCMHQLM
>HD0506 hypothetical protein
MFNEQFFFNLLMGVAAFLASWFIKAIFSKDDELKNEIKDVRSTIDKLRED
VKNEYQTKELAKQVHAGFTERLDRIYKTVETINQKLDKKADR
>HD1413 conserved hypothetical protein
MSERNLPLEYHPFPAILPKSATVAMLGTFPPTSEKRCMEFHYPNFQNDMW
RIMGLLFYKNLDHFRVDQEKRFDPVRIEAFLREKGIALCSSAQTAIRLKG
NASDKDLKIIDAIDMQALLTELPQLKWLFTTGGLATETLLSLLPEKSKLP
KTNEWINYPYTTDRTLYLYRLPSTSRAYPLSLAKKVEAYRQFFVRVGVL
>HD0413 conserved DNA topoisomerase I-related protein
MSLFTSTKHAEVCPDCGAELKLKRSKQGLFWGCTGYPACHYIRPLQQMYQ
VIKVLAESCPVCGYALQLKQGQFGIFIGCSHYPQCTFTVRNEIDSDPAIF
DCPACNKHKLVARKSRLGKTFYGCSGFPECKFTLPSEPIAKICPKCHGKL
AIVKKQRGKMCYLCINKGCQHLFSEENE
>HD1936 putative deoxyribonuclease
MKDLFIIDSHCHLDALDYQTHHKSVDEVIENAKARGVGHFISVCTTLGRF
KAMQALTAHRPDVSLSCGLHPLNIDEESFDYDQLVAFAQDEKVVAIGETG
LDYHYTPESKILQQTIFAQHIAIANQLQKPLIIHTRAARQDTINLLISEH
ADQCRGVLHCFTEDWEMASKALDLGFYISISGIITFRNAEELREVVRKIP
VERLLVETDSPYLAPIPYRGKPNQPAYVRETCEYIATLKGLSCAELARIT
TQNVQDLFKISL
>HD1296 conserved hypothetical protein
MNSLSFDFSDDFRPLAAKMRPRCLADYIGQSHLLGKDKPLRRAIEAGYAH
SMILWGPPGTGKTTLAEIIAQHFDAEVERLSAVTSGVKEIREAIEQAKYN
RQAGRKTLLFVDEVHRFNKSQQDAFLPYIEDGTVIFIGATTENPSFELNN
ALLSRARIYLLKPLQADEIEQILQNALQDKQNGLGQEHFILADEVLKLLA
DYVNGDARYALNCLALMADMAESSPQGKVLNQALLIAVLGERNARFDKGG
DHYYDLISALHKSIRGSAVDAALYWYARILTAGGDPLYVARRLLAIASED
IGNADPRAMQIAISAWDCYSRVGAYEGERAIAQAVIYLAVAPKSNAVYQA
FNQAKQLAKQAKDYDVPLHLRNAPTALMKSLAYGEEYRYAHNEANAYAAG
ENYFPEQLQDTQFYFPTERGMEKQIKEKLAWLKMQDHASEQQRYKR
>HD0356 putative deoxyribonuclease
MLFFDTHTHLDYLADQLELPFSQLINQATKAQVKRLMLVAVSAKNFAKIT
AYAQQYPQHLVYGLGLHPLYIAQHQYTDLDLLANHLAKQDRQCTAIAEIG
LDKGIATIATTAMWYKQCEFLEAQLALAKQANLAVSLHSRNTHDQLAVLL
KKNPLTKTGVIHAFSGSYQQAKRFIELGYKIGVGGIITYTRANKTRNTIS
KLPLDSLVLETDSPDMPVFGYQGQANQPERIKLIFEALCQLRSESAEQIS
QTIWQTSEKLFWPSLS
>HD0504 hypothetical protein
MISLTLALIVGAFGACILALFKWQTHKSEVQAFKLAQKNAKLEAEKQAQT
MVIKTQEKVIKNAKIKQKNEDSTRRISRSDVDEQLHQHNWFRDDGHDCYH
GVRDVQSDLSKSCGHGGNETASTCSQSDL
>HD0935 conserved hypothetical protein
MQANKGFYVVIAIVIFAMGLMSWFLFGGSGTDSTPSRSQQKAFLDTSLKD
LSPDTLRAMGIEGDTPNDTVRTLIGKSKANEKLINEVISKNEKLIAETSR
LQKKQDDVDYQIQQAVQSEAGALVDELQTLKNEILQLKDSTQKQAASVIG
NNGSNEALPINGATNAGGDTTTDNNTVRWVTPSDQIAMDDKGNLLPLGNI
GTSSNAKFGFPVDFKPKSSPDTPNSVKTQPFSEENNSVTAKKGKEVPFFT
IAPNSTLTNSVAMTALVGRVPIGNNVTEPYPFKLLIGRDNLIANGIELPD
IEGAIVSGTATGDWTLSCVRGDVKSLTFVFTDGRIVSTDSGDSKSGENIG
WLSDPYGIPCIQGTRKTNAPEYLGTNFLLAGASAAAQGMAQSQTTTVVDG
NAVIGAVTGNNGKYILGQALGSGLKDTADWFRQRYGQTFDAVYVPPGQEV
AVHINKEIKIDYSTGGRKVKYGQSSRTSALD
>HD1695 possible transposase
MAQHFLLNSKAKTLSTLQIARLSDEQAFDLLCDMRWGSKQHVTCPKCGVQ
HQAYFIASHKQWRCKHCHHTFSVTSGTIFANRKASIQTYLYVLARFVNAV
KGVSALEISRDAKINYRTAFVLCHKLRKALLENRDMHPLSGEVDMDGTYV
HPAPP
>HD1530 hypothetical protein
MHKSWSKDDAMAILPSVLSHWANRVETAKFGETEKVIDEGCKQTGLSRAT
FLRQIKPYRPKSNRKVRSDKGKHQLEKAELDLISAAWLHLRQKNGKTMAT
LERVLDILRANHRIKAEFIDENTGEVRPYSATSVERALRNANLHPDQLLR
PAPVVQLQSKHPNHVWQIDPSLCAVLLKRNRQRQWVVHYGRR
>HD0570 putatuve TatD family deoxyribonuclease
MFDSHLHLDQLNSNQVRHILADELISGVLAVSTDLASAKQLLQLQRQAPS
KLHIAAGFHPEQALPDKMSQQALFDWIIDHRQYLTAIGEVGLPYYLKREQ
PSLDYAPYLALLSDFIQLAKRLDLPLNLHVVHSDVALTMQLLEKYQFEKA
HFHWFKTDEQSLADFLAAPYFASVTPDILWNVNTQKVAQKLPLDRLLIET
DSPWQHQNLVNTSISTQLDAILTQLAILRNESKATIAQQTKQNVATFYQR
>HD1971 InsA, insertion element IS1 1/2/3/5/6 protein InsA
MASVSISCPSCSATDGVVRNGKSTAGHQRYLCSHCRKTWQLQFTYTASQP
GTHQKIIDMAMNGVGCRATARIMGVGLNTILRHLKNSGRSR
>HD1970 InsB, insertion element IS1 1/5/6 protein InsB
MPGNSPHYGRWPQHDFTSLKKLRPQSVTSRIQPGSDVIVCAEMDEQWGYV
GAKSRQRWLFYAYDSLRKTVVAHVFGERTMATLGRLMSLLSPFDVVIWMT
DGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLARLGRKSLSFSKSV
ELHDKVIGHYLNIKHYQ
>HD0420 dam, DNA adenine methylase
MNNNQRAFLKWAGGKYRLSIEIRKFLPPQSTQGVCFVEPFVGAGSVFLNT
HYDRYLLADINSDLINLFNTIKQDVERYITQSKLIFLSPNANTALYYYAK
RQEFNHSTDIFHRSVLFLYLNRFGFNGLCRYNKKNEYNVPFGRYKKPYFP
EKELRFFAAKAQKAQFICADFEHIFEYIYQNPDNYIVYCDPPYAPLEQES
NFTHYASGGFSLAQQELLVKHAKQAQQKQIPVLISNHDTAFTRKIYHGAQ
IKKIKVQRSIGKNAKSRIKVNELLALFS
>HD1590 deaD, cold-shock DEAD box protein-A
MTNNTLTFSDLGLPQSILDAVNDMSFVTPSPIQQECIPHLLAGSDVLGMA
QTGSGKTAAFSLPLLAQIDPNQRHPQMLVMAPTRELAIQVADACEQFTKN
MKGIRVVTVYGGQRYDIQLRALKQGSQVVVGTPGRILDHIRRGTLNLSTL
KSIVLDEADEMLRMGFIDDVETVMAELPEKHQTALFSATMPEPIRRITRR
FMSDPKEVKIQATQRSAPDITQSYWLVNGFRKNEALLRFLEVEEFDAAII
FTRTKTGTIDITELCERNGYRTAALNGDMTQQAREQTLDKLKSGRLDILV
ATDVAARGLDVERISLVVNYDIPLDSESYVHRIGRTGRAGRSGRALLFVE
PRERRLLRNIEQLMKKPIDPVAIPNHQVLMEKRREKFKAKISKQLEHHDL
EKYRELLENLFTADQDHEELAAAMMMLQEKQKLILPPDPEVRNLRSERGR
RDRNERNDRRNGREHRENNGVAMDLYRIELGREDGVEVRHIVGAIANEGD
INSRYIGHIKLHDRYSTIELPKGIPNHIVQHFAHKARVLNKQMQMSLLGP
AGGANNQPFEERRGSRRDQRNSGRNSRPNYREDSFNKERKNTGFKEKRFN
NKSSRD
>HD0851 dnaA, chromosomal replication initiator protein
MEQIVSSLWSDCLNHLQTKVSPIDYSTWLRPLQASFANEELTLYAQNPFV
ENWVKDKFLTEIIDLARFLSKNEQLKITIRVGNKPTEQNLSASSTNKEEL
TQDTVHKFKTGLNGRLTFDNFVQGKSNQLAKAVAQQVADNPGESHCNPFS
LYGGTGLGKTHLLHAVGNEILKRNPQARVVYIHSERFVQDMVKALKNNTI
ENFKKFYRSLDVLMIDDIQFFAKKEASQEEFFHTFNSLFERNKQIILASD
HFPKNIENIEERIKSRLNWGVSTAIEPPELETRVAILMKKAEERNVELPE
EVAFYLGQKLRTNVRELEGAINRVSAWCNFTKRQITIDAVRETLKDLIAS
YDHLVTIENIQKIVAEYYNIKMADLKSKSRTRSIARPRQMAMALAKELTS
HSLPEIGREFGGRDHTTVMHACKTINELRDTDNSIQEDYTNLTRKLSS
>HD0973 dnaB1, replicative DNA helicase
MAKDKEIKIKVSPTYSTEAEAAVLGSLILKNEAFDEISTLLCADDFFNHQ
HKIIFEGISRLLQLGKPVDLITLDQYLTDKKLVDDIGFGYLAQITNETPS
AANIAAYAKVVARHSKQRRFLKLGQFIVSEMQSSKDEVQLEVFEENVDKQ
YTNVTVEQEKNDVADLGEAFERILTQMEESSSSADPVSGTPSGITELDNV
TTGGQPGELIIIAARPAMGKTTFAQLVAQSTLNKYPDASIQFYSQEMPAD
QLVQRFMSMRSRISLQSIRQATELTELAWSKIAEAMGYIMNNWKDRLLID
DEPSLPPYRLRTKVRRNTRLYGKPKAIIIDYIQLMRSTGKFENRNLELAE
ISSELKKLAKETGCPVYALSQLNRSLEQRANKRPVNSDLRDSGSLEQDAD
VIYHLYRDEVYNPQSEQRGCVEIIIGKQRNGPLATVTAKFLGQYSLFENM
DNKDSRYE
>HD1372 dnaB2, replicative DNA helicase
MRDKQVENIAISPHSIEAEQAVLGGIMLSNEHWDNVVERIQASDFYNYAH
RTIFEQMVELMRNNQPIDIITLDQALKAKGVLQDVGGFAYLAELSKNTPS
AANILAYADIVRDRSDLRGVILASNQIAEMAYHTKGRSAKDVLDEAERVV
FEIAEKRHASNEGPQKIDHILLNTLARIELLSKNRNNGGVTGISTGFIDL
NKKTAGLQPSDLIIVAARPSMGKTTFAMNLCENASLHDIEDHNDLDENGN
PRKKPAKPVLIFSLEMPADQIMMRMLASLSRVNQTKIRTGQIHDDEEWAK
ISSTVAILQERKNIFIDDSAGLTPTELRSRARRIYRENGGLSLIMVDYLQ
LMRVPNFSDNRTLEIAEISRSLKALAKELEVPVVALSQLNRSLEQRQDKR
PVNSDLRESGSIEQDADLIMFIYRDEVYHSESDLKGVAEIIIGKQRNGPI
GRVKLTFQGQYSRFDNYTGTGDVYSDEF
>HD0551 dnaE, DNA polymerase III alpha subunit
MTQPRFVHLKVHSDFSMINGLAKVKALVKTAAAKQMAAMALTDFSNFCGL
VKFYGESLTAGLKPIIGADIYVRSDPTSEDIFELTLLAKNNQGYHNITVL
LSRAYQQGYVEFPIVEKAWLAELNEGIIVLSGGRSGDVGKALLKENEQEA
ATLVAFYQQYFADHYYLSLCRTGRSDEERYLQQAVQFAKKYQLPLVAVND
VVFLKEDDFDAHEIRVAIHDSYTLDDPKRPQKYSPQQYFRSEEEMCALFA
DLPQALMNSIQIAMRCNVTIRLGEYFLPNFPTGELSTEDFLIKKSQEGLE
ERLAFLFPDAETRKNKRSVYDERLQVELDVINQMGFPGYFLIVMEFIQWS
KDNDIPVGPGRGSGAGSLVAYALKITDLDPLQFDLLFERFLNPERISMPD
FDVDFCMDGRDHVIEHVADTYGRQAVSQIITFGTMAAKAVIRDVGRVLGH
PYNFVDRISKLIPADPGMTLAKAFEAEPKLPELYNADEEVKDLIDMARKL
EGVTRNAGKHAGGVVIAPTAITDFSPLYCDSEGLHPVTHFDKNDVEYAGL
VKFDFLGLRTLTIIKWALEMINQRLTREGKPPIRIENIPLDDKPSFKLLL
AAKTTAVFQLESRGMKDLISRLKPDCFEDIIALVALFRPGPLESGMVQNF
IDRKHGIEEVSYPDAQYQHECLKPILEPTYGIIVYQEQVMQIAQELAGYT
LGSADLLRRAMGKKKPEEMAAQRDIFEKGAIEKGIDGQLAIKIFDLVEKF
AGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTSEMDNTDKIVGLY
DECINMGLTVVPPDVNSGKHRFSVNEKGQIVYGLGAIKGVGEGPIEAILE
ARNKGGIFKDLFDLTARVDLKKINRRTFESLIMSGAFDKLGPHRAALMKN
LEDALKASDQHSKMEALGQSDMFGVLTETPEQVQKAYANTPKWSEQAVLE
GERTTLGLYLSGHPIGRFLKELAHYAPTRLNELQPTRRGQMVTVAGIIVA
SRIAVTKRGSRLGIATLEDRAGKIDITLFSEALENYGDLLVKDNIIIATG
SVQSDDFNGGLKMSVREIANLDEIRSRYAKSLALAISQQQLTPQFVKALR
EIIEPYKEGTLPLHFYYQSPEGRALLRGGVEWRVTPKDEMLDKLAVLLGE
NAVELEFE
>HD0690 dnaG, DNA primase
MKGSIPRSFIDDLVARTDIVELINSRVKLKKAGREYQSCCPFHHEKSPSF
TVSPTKQFYYCFGCGAHGNAISFLMEYDKLEFPEAVEELAAMQGLEVPRE
NATHQAKSVVSYQAKRNLYELLAQISQFYQQHLVQDSASQAYLQQRGLSA
EIISRFEIGFAPNSMDAVLCKFGINRDEIQKLLDTGMLSQHDSGRVYDKF
RNRVMFPIRDKRGRVVAFGGRVMGDEKPKYLNSPESATYHKGNELYGLFQ
ALQQNENPAALLVVEGYMDVVALAQFGVNNAVASLGTATTGEQIQQMFRC
TEQVICCYDGDRAGREAAWRAFENALPYLQDGRQLKFIFLPDGEDPDSFI
RQQGKAGFEAYLQAGMSLSDFLFDNLIAQVDLSSKEGKSKLAALAVPLIN
RIPGEMLRVYLRNMLGQKLGILDPAQLEAILPAKVPANRKSIAQALPIKR
TPMRLLIALLLQNPELVQFVPDISALQSLQEPGFQLLVELIEVCREKVGI
SMGVLLEHWRDKPHYRTLERLANWDHLVTPENVESTFIETLDFLYAKLVE
KRIEALIAKDRMHGLNAAEKQELALLISQ
>HD0850 dnaN, DNA polymerase III beta chain
MQLTITREQLLKPLQQVCGVLSSRPTLPVINNILLDINGSRLSLTGTDLE
VELTTQAELEQAVDFSGKFTLPAKKWLDICRSLPENSLISIQFEQDRALI
RADRSKFNLATLPASDYPNLMDWKPEVDFSMEQSTLSRLIDATQFSMANQ
DARYFLNGMKFETEGNLLRTVATDGHRLAVCTMALSQELTTHSVIVPRKA
VLELSRILSMTADPVRLEIGTNNLRISMNGVVFTSKLIDGRFPDYRRVLP
RNADRILEAETEMLKRALMRAAILSNEKFHGVRLALSENMLKITANNPEQ
EEAEEIIDVAYQNTAMEIGFNVSYLLDVLNTLKCERVRFNLVDASSSCLI
EDCENSTAEYVIMPMRL
>HD0223 dnaQ, DNA polymerase III epsilon chain
MSEPQIIRQVVLDTETTGMNFNGPPQIGHNIIEIGAVELINRRLTGRTFH
VYIKPPREVEEEAIKVHGITNAFLQDKPTFAEIAHEFLAFIQGAELIIHN
APFDVAFIDQEFSSLVNPPSKTAEMCTVTDTLQMARKMYPGKRNNLDALC
DRLGIDNSKRVLHGALLDAEILADVFLMMTGGQLALLTEEEHSHTQQQRE
TSLAVKEHFDTSGLIVLQLSQEECQAHQEYLALLDKKSKGNCLWNMLTKA
ESEAKH
>HD1819 dnaX, DNA polymerase III subunits gamma and tau
MSYQVLARKWRPQRFSEVIGQQHVLSALENGLRQDKLHHAYLFSGTRGVG
KTSIARLFAKGLNCETSITATPCGKCENCKAIEEGRFIDLIEIDAASRTK
VEDTRELLDNVQYKPTVGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYV
KFLLATTDPQKLPVTILSRCMQFHLRALTPTQLSQHLEFILTQENIPYEL
AAIEKLAKAAQGSIRDSLSLTDQAIAVSNTNITLPIVSEMLGLIDDDQPL
ELVMALAQANGDQVMAIIQNIATKGIDWQQLLNDVAETLHQIAMLQLLKQ
ETPSDTPLHLLAKQIPPEDVQFFYQLMLIGKKELAYAPEQSIGVEMVFLR
ALAFHPKRTEEINQRAQLNQANNEQSAMVDNTQHKLEQLKANLTQVTTDK
TSAQAVESSSKRSIKSAQQTVPANITDSTNNTLISPALVAMQARKQLQQK
HVELNQHEKKKRKSITVNSTSSPTEITTNTQHQSLDLQERLMNLAHSTAK
VTSQPSEPEVDSQSTEEDYCWTWLDPELAIENKSTKPAEIKQAILQDKTP
ELVAKTIELACEQDQWCQIINTLNLSSFSRQIALNSYLAQTTAQQLDLVL
KPSMSHLDNEESRKSLTLALADKGFTYKLVIGESAEHKTPLEIRRMIFEK
LTLAAKQALNNDEKLMLLRDTFAAEIDESTIRAVANI
>HD0449 fis, DNA-binding protein
MLEQQPAQNPLTVSMLNAQAQQVNKPLRDNVKAALKNYLSQLNGEDPTEL
YELVLSEIEHPMLDMVMQYTRGNQTRAATMLGINRGTLRKKLKKYGMG
>HD0678 gcr, site-specific recombinase
MAKMYVDEQKLPAFIEYQVQQNDAFALLSGICKWLRKGSPHQAAAKLDFF
TTYLKQQPAVGQAVATLLCRWLCKMRLYPILVSGGILGREGFGREMRHRL
YEKINPAFKDVNDLRDVFFLLFRQRKDMQWMNAIPDKYWLSLLHCLDRFV
SEQDRNWLYDHIRHEGFFAIKMLSIWIAAEDLEPELIRLDPTLLDADSPF
VALQKEVGLWLNARHQHQYYDDSHLHVMLTQSRELVGRLQKKGETAGSSM
GVAYLLERLCQTLDRLAMLMDLLAAKRVARLRVLKITKMLAEAAANKHSI
SDLWKQSIKMLSRSITQQTSDHGEHYITRDKKEYFSMFFSAAGGGVLIAL
MALFKIYLGHIIDDKVWKGVAEGLNYGIGFAIIFMLHFTVATKQPAMTAS
RFAEAVERNSQGRAVNMKLAQLLVDVLRSQSAAVFGNVLVSVYVAAGIAY
LYASHMGQPLLTSEMVQYQLHSIDPTQGTLWFAAIAGLWLFCSGIISGYF
DNRSNYLNTRMRLRQHPVLKLLLPQRLRECLADYIHDNSGSIIGNICFGM
LLGLTGVIGYWLDLPLDIRHVAFSSANVGYAVVSDQLGWQIFMQSLGFVL
LIGVVNLIVSFSLTLWVALRSRNTEIDSWTAILKCICEIVRKRPLSLLLP
FQLHHK
>HD1748 gyrA, DNA gyrase subunit A
MSELAKDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLF
SMDRNSNTFNKPHVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRY
MLVDGQGNFGSIDGDAPAAMRYTEVRMQKITQELLTDLDKETVDYSPNYD
GKEMIPDVLPTKIPALLVNGSSGIAVGMATNIPPHNLNEVLDGCLAYIEN
DQLSIEELMRFIPGPDFPTGAIINGRKGIEDAYCTGRGKVYVRAKATVEK
TEKNREQIIVTELPYQVNKAKLIEKIAELVKDKKIDGISSIQDHSDKKGI
SIVIEIKRDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQPKVLNLKQII
EAFVKHRREVVTRRTIFELRKARERAHILEGLAIALANIDPVIELIRQSK
TAEEARLALLDRAWSLGNVAPMLEAAGVDASRPEDLAVELGVHNGEYHLS
EAQARAILELRLHRLTGLEHEKIVDEYKQLLTEIGELLHILNSAERLMQV
IREELEKVKAEFGDERRTEITAASGDINLEDLIAQEDVVVTLSHAGYVKY
QPLSDYEAQRRGGKGKSATKMKEDDFIEKLLVANTHDTILCFSSRGRLYQ
LKVYQLPQASRGARGTPIVNILPLVKEENERITAILPIPKGEFSTDKFIF
MATASGIVKKVCLDAFSHIRSSGLITLKLREGDELIGVDITDGGSEIMLF
SAQGRVVRFAEKAVRSMGRTATGVRGIKLATSDILADDIEDTEIVEIEQE
ETEDNTAVNLNIDRVVSLVIPRADIATSGDILTVTENGYGKRTVLTEYPI
KSRATKGVLSIKVNERNGKVVAAVQVDELDQIMLITDAGTLVRTRVAEVS
LVGRNTQGVRIIRTAEDEKVVSLERLCEPEEDESNELQRDTEVIETSTEA
>HD1643 gyrB, DNA gyrase subunit B
MSEQNQTNSYDSSSIKVLRGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVD
NAIDEALAGHCQDIIVTIHSDNSISVQDDGRGIPVGIHPEEGVSAAEVIM
TVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSSKLQLTIRREGHVHEQFY
SLGEPDAPLTIIGNTDKTGTSVRFWPSLAIFKNKTEFEYKILSKRLRELS
FLNSGVSIKLIDEREGKEEHFKYEGGIKAYVEYLNEGKTHIHNTPFYLAT
EKDGIGVEVSLQWNDSYNENVYCFTNNIPQRDGGTHLAGFRGALTRALKN
YMDNSGVVKKVDANIDASGDDAREGLVAVISVKVPDPKFSSQTKDKLVSS
EVRGAVESSMNEALAEYLAENPDDAKNIVTKIIDAARAREAARKAREMTR
RKGALDLGGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRDRKNQAI
LPLKGKILNVEKARFDKMLSSQEVATLITALGAGIGRDDYNIEKLRYHKI
IIMTDADVDGAHIRTLLLTFFYRQMPELIENGYVYIAQPPLYKVKKGKQE
RYIQDNDEMLQYEIDIALEGAGLYVSEGAPALSGLALEKLISQYNGVQKL
FERLVRRYPMTILNELIYSTALSVELAKQQLKITAWTEQLVNTLNTKEVN
GSSYQVSVYFNSERQIYEPQIVVTTHGMDTTYRIDFNFITSNEYGLIVKL
GEQLNDLLADSAYVVRGERRQAVSTFAEALDWLVKESRKGLTIQRYKGLG
EMNPEQLWETTMDPVARKMLQVNISDAIAADKLFSTLMGDEVEPRRDFIE
SNALYANLDI
>HD1764 hepA, RNA polymerase associated protein
MFIIGQRWISESENNLGLGIVTARDNRTVTIRFPAAEEERIYALAVAPLI
RVQFQKGDRINCIDGWQLDVEDVLDNQGFVIYLGSRVDNGEQVALPEMQL
DHKVSFSKPQDRLFSAQIDRSDRFALRYRALQHQQAQFQSPLRAMRGIRA
SLIPHQLHIAKEVGQRVAPRVLLADEVGLGKTIEAGMILQQQLFSGRVER
VLVLVPESLQHQWLVEMLRRFNLNFSLFDEERCSDFDKTDEDGNDISENP
FESEALVIASIDWLEKATTRATQVLLADWDLLIVDEAHHLVCSATESSQA
YQFVARLAKKITAVLLLTATPEQLGLDSHFARLALLDPDRFYDYATFIAE
QKAYKPVADAVANLLNDKPLNDMAKNAIAELLSEQDTEPMFKIINSEKSA
ESDRLQVRQELINALIDRHGTSRVLFRNTRQGVKGFPHRVYHQITLEMPD
QYANALNVRAMMGSMEPQDHFYPERLYQCLNSQAPMGNRWEDFDPRIAWL
MTFLKNHRDEKVLIICKQAEIAITLAQVLREREAIRTAVFHEHMTIVERD
RAAAYFAQIEEGAQVLISSSIGSEGRNFQFARNLVLFNLPDNPDLLEQSI
GRLDRIGQKNDIQIYVPCFKNSMQIVLAEWYHRGLNAFEETCPMGSNLFA
EFSETLQSFFNDPQATGFEEFIAKTSKRRQQLKMELEQGRDRLLELNSNG
GETAQALAEAIAQEDNNPHLVNFALNLFDIIGLEQEDLGEKLIALNPTGH
MLVSDFPGLSEEGTTITFDRQLALMREEIELLTWDHPMIRHGIDLITSGD
IGKCAISLLINKNLPAGTLLLEAIYVVEAQAPKSLNLTRFLPPTPVRVLL
DSKGNDMASQVAFTSLEKQLKPVNKQMANKIAKMAQTQIKKLIMLSEQKI
ETKAQAIIIAAKQQADNVLSAELHRLTSLQAVNKNIRADEIELLEHLKAE
SLAQLTQANWRLDSLRVIVSNKA
>HD1130 holA, DNA polymerase III delta subunit
MQKVFPEALTHHLSKSLSPFYLLTGNDLLLLNESKAQIIHAAKAVEFDEI
QEITINNETKWEQLFESVQNFGLFFSRQIIILNLPENPTTAQMNHIAKLA
GLINADLMLILCLTKFSKAMEKQAWFTQMDAKLVQVSCQTPDINRLPIWL
ANRAKMMGLQLEVEVVQLLAYSYEGNLIALQQTLQQLQLRTHDGKITLPQ
AKEIIEQFAQFTPFQWIDALLEGKIARAIRILKYLKDEEIQVVMLLRIVQ
KELLILLEITRSPAAILTSQQALYVGNLRAEFDRLKIWQNRRPFYQSAIQ
RLSYKKLYLLIQQLAELEKQTKHIFSEQIWLELEHFSTLFE
>HD1935 holB, DNA polymerase III delta' subunit
MALYPWLEQHYQQLTATFSNGRGHHALLFKSDVGLGTEKLIAQFAAWLLC
QTPKQGHACDQCKSCLLLKNGNHPDLHILESIDGKDIGIEQIRETNTKLQ
NFAQQGGNTVVYIKNAECLTAASGNALLKTLEEPNDKVYFLLAAPQQTAI
LPTIASRCQTWLIHSPEMALTLAWLQAQAPTATREACEIAMRLCHQRPLI
CKTFLEKDRLTARKTFLRTFWRFFNNRDVFLLFSQFDKEKALILEQLEWL
ESFFSDSIKAKLAITNGWINHDLHNGILQFSQQLDIKRLLIGHQLIQQTK
WDLLAVNAINQELILLACLTKLTLNVFE
>HD0667 holC, DNA polymerase III chi subunit
MWPSSRDSVKQVKFYLLSQLGSDDLSAAEAMACELAAQAWRSGKRVLIAC
ETEQQALNIDEALWAREPDSFVPHNLAGEFTQYATPIEICWQNKRNAQRR
DFLISLQTNLPDYINTFTQIIDFVPIDEKEKVHARERYKQYRQLGWQLVT
EQA
>HD0211 holD, DNA polymerase III psi subunit protein
MNRRDLLLEEMGITQWQLTKPQVLKGEAQICLDNRIKLVIVCQERHHTTQ
LFQDILLTLNIQKEQYQWFDFAQAKRLVFQHQPIFWLIGDAEQAVAFAHQ
NANLPIWQNESWHQLAFVATKRQFWQQIAPFANG
>HD1004 hupA, DNA-binding protein HU
MNKTELIDAIVADTALSKKDAKAALEATLNAISGSLKNGDSVQLIGFGTF
KVNERSERIGRNPRTGEEIKIAASKVPAFVAGKALKDLVK
>HD1482 ihfA, integration host factor, alpha chain
MTLTKVEFTASLISKYGFDKSVAKQFVEQFFEEIRVALANGQEVKLSGFG
NFSLRKKNARPGRNPKTGESVAVSARRVVVFKPGQKFRERVENVKVKS
>HD1353 ihfB, integration host factor, beta subunit
MTKSELIEKLIALNPSLPEKAVEDGVKDILENIMLTLEQAKRVEIRGFGS
FSLHYRQPRIGRNPKTGASVKLDAKYVPHFKAGKDLKERVDLV
>HD1101 kdkA, 3-deoxy-D-mannooctulosonic acid kinase
MPMIHYIFNREIVPPAIEPLLKQLFSGQNFTQSDRLLGYSKGRGITWFLN
TQAELGINIVLRHYYRGGLFGKVVKDRYLFQRIDQTRAVQEFNLLTQMQR
WHLPVPRPIAVEINKQSIFYRAKIMLEKIEHTQDLSKLLQTQPLVAEQYQ
QLGQLIRQLHDHQIHHSDLNIHNILLDDNGKFWLIDFDKCCIKAGEEWKQ
ANLNRLLRSFHKEQTRLGIQFHQQNWQSLLTGYQQHNQGDNR
>HD0830 ligA, DNA ligase
MPLFSQFELSNNITPTQLEALRDQLREYEYHYHVLNNPLVPDAEYDRLIN
QLKNIEQQYPELITPDSPTQRVGAKPLAGFAQVAHEMPMLSLDNAFSETD
LDNFLRRIENYLSLDANQLTFCCEPKLDGLAVSILYIDGVLQLAATRGDG
TTGENITANVRTIRNIPLKLKMANPPHRLEIRGEIFMPLKGFNALNQRAL
AKGEKSFANPRNAAAGSLRQLDPQITRQRPLMLNAYGIGVYESNYQRLPT
SHYARLEWLKSIGIPVNAEIRLARGYPQLLAFYADIQAKRADLGYDIDGT
VLKVDDITIQETLGFISRSPRWAIAYKFPAQEEMTILKDVEFQVGRTGAI
TPVAKLEPTLVAGVTVSNATLHNGDEIERLGVAIGDTVIIRRAGDVIPQI
IGIVADRRPANAKKIVFPTACPVCHSAVIRIAGEAVARCTGGLFCPAQRK
EALKHFVSRKAMNIDGVGEKLIEQLMARELIHTPADLFKLDPLSLMRLER
MGEKSAQNALNSIEKAKHTTLARFLFSLGIRDVGETTALNLANHFGSLEN
IRTANVEQLKEVQDVGEVVANRLVCFWQEQHNVAVVEELIAQGVHWDNIV
QLEIADNPLKDKNVVLTGTLTQFSRDQARKLLQQLGCKVSSAVSTKTDFL
IAGEKAGTKLTKAEQLGIRILDEHAFADLIKQLEYE
>HD0975 mfd, transcription repair coupling factor
MTAYMSLELHFNLPLISPEAAKFQDHQTLGNLIGDADTLIIAQAATQFNG
CTLVVTTDIRTALRLEKSLRQFSQLPVAVFPDWETLPYDNFSPHQEIISA
RLSALFHLRQTKQQILLLPVNTLLQKLCPPSYLANNVLLIKKGDRFSIDS
LRLQLENAGYRAVEQVLEYGEYAVRGALFDLYPMGTSLPFRLDFFDDEID
SLRTFDVDTQRTISEIEQINLLPAHEFPTDQQGIEHFRTKFREVFGEIRR
EPEHIYQQVSKGILNGGIEYWQPLFFQEMASLFDYLSPNTLFITYAGIND
KATQFYQETTQRYQSRQLDPMRPLLKPEQLWFKPDEINRALKGYPRLTLT
TEKIRETTAKMNASVQPLPALAINTHLKDPLQAFNQFRNTFSGKIIFSVE
TEGRRETLLELLAPLKIKPKQINTLAEADSQICLLISPLDQGFIFEDTSG
QHYAVICETNLLGKRVQKTVKKDKHNAVNPDTLIRNLAELKIGQAVVHLE
NGVGRYAGLTVLDTGGIKAEYLVLNYANDAKLYVPVAALHLISRYIGGAD
EQAPLHKLGSETWAKNRQKAVEKIHDIAAELLDIYAKRETQKGFKFAYDR
DAFMQFSHSFPFEETEDQKLAIHAVISDMCQAKAMDRLICGDVGFGKTEV
AMRATYLAVENHKQVAVLVPTTLLAQQHYEDFKDRFANYPINIEVLSRFK
TAKEQKDILARVATHKVDILIGTHKLLQDNVKFHDLGLLVIDEEHRFSVR
QKEKIKQLRANIDILTLTATPIPRTLNMALNGMRDLSIIASPPSRRLTIK
TFVCQQDDTIIKEAILREILRGGQVYYLHNDVATIENCATKLAELVPEAR
IVIGHGQMRERDLERVMSDFYHQRFNLLVCSTIIETGIDVPTANTIIIEQ
ANKFGLAQLHQLRGRVGRSHHQAYAYLLTPHPKTLTKDAQQRLEAISSID
NLGAGFVLATHDLEIRGAGELLGAEQSGQIESIGFSLYMDLLKNAVQALQ
NGLEPTLDEITQSQVEIELRIPALLPDDYVPDVNMRLSFYKRIASTENKE
GLKDLKIELIDRFGLLPEAAQNLFRITQLRHMAKQLDLKKIEMGVNGGYL
EFKPNAQLNPIKFLQLIQSDKNMFKFDGPLKFKIIKPFEKGEQRLQFITD
LITELTNQAD
>HD0544 mutH, DNA mismatch repair protein
MQLSIQPQSEAELLAKANWLAGFTLGELAQQLNTVVPPDLTRDKGWVGQI
IERALGATAGSKPEQDFAHLGIELKTIPINNHGLPLETTFICLAPLIHNQ
GITWQTSHVKYKLQRVLWIPIQAERSIPIKDRYIGRAILWSPSYQQEQQL
RNDWEELMEYIVLGRLDQINGHLGEVMQLRPKGRNRLSITQSIDQHGEQI
QSLPLAFYLRKPFTAAILQNFLQQSD
>HD0743 mutL, DNA mismatch repair protein MutL
MTQHLIHILPPQLANQIAAGEVVERPASVVKELVENSLDAGANHIQIDIE
KGGAQLIRLRDNGCGIAKQDLTLALTRHATSKIATLADLEMILSLGFRGE
ALASISSVSRLTLTSRTANQTEAWQAYTQGREMNVEIQPASHPVGTTIEV
ANLFFNTPARRKFLRTDKTEFNHIDEVVRRIALAKPTISFTLTHNGKIIR
QYRKVADQSVAQQQKRVAAICGNHFLQQATHIEWQHGDLHLYGWVSSPQL
ARPQNDLSYSYVNGRVMRDKIINHAVRQAYAELIPTGDQPAFILFLDLNP
TELDVNVHPAKHEVRFHQARLIHGFILQGVQNALQAQLALTPTDNQTDSV
AETKACYTADNNRAAAGSNIFSSTPYPRYSGATNRPTKTAQQCYAELINT
DKNDNANVAPIIYAEPLTTQATPAITETADPYPHHSQVLALVENKALLLK
EQEHFYVVPLKKLAQLQLTLSLAEKKSQPLLIPLSLSLDQAQAERWQQYQ
AQLLDSGFEIKQKHWQGQTRLSIIAVPQCLRQQNLQQLLLQLFNQHTDDL
ADFFAKNSELMTTYSLPEGTRLIANIEQQAKTQLADLKLAVDFSAYLT
>HD0710 mutM, formamidopyrimidine-DNA glycosylase
MPELPEVETCLRGIEPYLAGQTIQQIVIRTPKLRWPISAELCAMSGAKIL
ALSRRAKYLIIHTERGDILVHLGMSGSLTLLNSSQPTKASKHDHVDLITE
AGIILRYNDPRKFGAWLWAKQAENYPLITKLGPEPLSDTFTSDYLFKKSR
NKTVAVKNFIMNNDIVVGVGNIYASESLFMAGVHPELAAQNLTEKQCVQL
RNVIQAVLTKAIIQGGTTLKDFTQPDGKPGYFAQVLQVYGRKGEECRECG
TLIQAKVIGQRNSYFCPDCQPLPK
>HD2024 mutS, DNA mismatch repair protein MutS
MNKDVSQHTPMMQQYLQLKAQHPDILLFYRMGDFYELFYEDAKKAAVLLD
ISLTKRGASAGEPIPMAGVPYHAVEGYLAKLVALGESVAICEQIGEVGAS
KGPVERKVVRIVTPGTVSDEALLPERQDNLVAAICEQKGVFAIATLDMTS
GRFLISELANKTALMAELQRVMPAEILYPEDFAYIPMLNNYKGLRRRPCW
EFELVTAIQLLNRQFGTQCLDGFGVQQAKVALCAAGCVLHYAQETQRTAL
PHINSIHLSQDSEMVLLDAATRRNLELTQNLAGGTEATLASVLDKCVTPM
GSRLLKRWIHQPIRQLDILKSRQDMIATLQQYEQIEPLQPLLRNVGDMER
ILARIALRSARPRDLTRLRTALAQLPLIAKCTQNLGACLAVLLSKNADFS
ELYTLLEQAIIETPPQLIRDGGVIAEGYHAELDEWRTLSAGATQYLDNLE
IRERESTGIDTLKIGFNAVQGYYIQISQAQAHKAPIHYVRRQTLKNAERY
IIPELKTYEDKVLKAKGAALALEKQLYEQLFDLIMPHLGALQQTAMALSE
LDVLVNLAERAESLHYVRPSFSLQRGINIKAGRHPVVEHVMVEPFIANTV
FLNSQRHLLIVTGPNMGGKSTYMRQTALICLMAYIGSFVPAESAEIGVID
RIFTRIGASDDLASGRSTFMVEMTEMANILHQATAQSVVLIDEIGRGTST
YDGLALACACAEWLANKTQSLTLFATHYFELTSLPSQLKGVANVHLDACE
YNDTIAFMHSVQEGAASKSYGLAVAALAGVPKQVIALAKQRLVHLEEFSQ
QTKMAQQHPQADLLFTVEMPEEEKMAPLAKAESAVELALRAITPDELTPR
QALDELYRLKKLLSSS
>HD1786 mutT, mutator MutT protein
MTKPLIQVAAGIIRNEFGQIYVTQRLAGQDFAQALEFPGGKVALQETPEQ
ALKRELEEEIGIHILGAFPYEHFCFEYPTKVIEFFFYLVEEWVGEPFGRE
GQAGFWITQMDLDEAEFPPANTQLIRRLKSEY
>HD2004 mutY, A/G-specific adenine glycosylase
MPFAQAVLAWFKQYGRHHLPWQQNKTLYSVWLSEVMLQQTQVATVIPYFE
RFMVRFPSVIDLANAEIDEVLHLWTGLGYYARARNLHKAAQQIRDQFAGQ
FPREFDQVLSLAGIGRSTAGAILSSVLDVPYPILDGNVKRVLSRVFLVEG
WSGEKAVENKLWLLTAQVTPNRQVADFNQAMMDLGALVCSRSKPKCAICP
LETQCETARLAVWDKYPAKKPKKQLPERQTYFLVVKSGTRILLQQRAAKG
LWGGLYSFPQFEDFATIKRTISAKNWQISQQLITFRHTFSHFYLDITPIL
VDLEAQDSVQMPPLVAQEPVSDYCQSVSSSENYWYDLHATNEVGLAAPVK
KILDELSLTYKE
>HD1062 nfo, endonuclease IV
MKYIGAHVSAAGGVENAVLRAVEIGGNAFALFTKNQRQWQAATLKAETIE
KFKRFCQVHQFTADQILPHDSYLINLGHPELENRQKSVAAFIDEMQRVNQ
LGLKLLNFHPGSHLNKISERDCLAYIAESINIAIKTVPNVVAVIENTAGQ
GSNMGYRFEHLAEIIEQVEDKSRVGVCLDTCHLFSAGYDISSWQACEKTF
TDFDQIVGYAFLRGMHLNGSKTALGSRVDRHHCLRDGTIGTAVFEYIMQH
HQFDHIPLILETIQPEIWAEEIQFLRDLSAK
>HD1115 nth, endonuclease III, DNA (apurinic or apyrimidinic site) lyase
MNQAKRIEILTRLRQKNPHPTTELHYHNPFELLIAVILSAQATDKGVNKA
TDKLFAVANTPQQIFDLGVDGLKSYIKTIGLFNSKAENIIKTCRDLLDKH
NGEVPQDRDALQALAGVGRKTANVVLNTAFNQPTIAVDTHIFRVSNRTGF
ATGKDVLKVEEKLLKVVPAEFKIDVHHWLILHGRYTCIARKPRCGSCLIE
DLCEYKQKSEI
>HD0598 ntpA, probable dATP pyrophosphohydrolase
MLTTPYKNPNSVLIVIYAQNTKRVLMLQRKDDPSFWQSVTGSLEQQESAL
EAAKREVLEEVGIDITQQKLTIYDCQKSVKFEIFPHFRYKYAPNVTHCCE
HWFLLALPNEQTPTLTEHLTFKWLSADEAIHLTKSPNNAAAIAKYLLNQA
D
>HD0172 nudH, (Di)nucleoside polyphosphate hydrolase
MIDFDGYRPNVGIVICNKVGQVLWARRFGQNSWQFPQGGINEGENIETAM
YRELYEEVGLTKKDVRLLWASKYWLKYKLPKRLVRNDASQPVCIGQKQRW
FLLQLVSDESAVNLKTTKSPEFDGWRWVSFWYPVRQVVSFKRDVYRKVMR
EFAAILLNETRKGETERSVLEASDKREYQRRETRKSARAWNHYPKGK
>HD1077 ogt, methylated-DNA--protein-cysteineS-methyltransferase
MNKNIYYQYYTSPVGQLLLIANQQGLIGVEFEQEQLTRQTVEWQPISSND
PMYAVFSKTCDLLDRYFAGEAVSFSQLDFLAPQGTAFQQAVWQALRHIPY
GKTTSYGKIAVRLGKPKAMRAVGGAVGRNPISILVPCHRVLGKNNSLTGF
GGGLATKRYLLTLEGVKFKDKGTEFVNPKQKKWCP
>HD1587 parC, topoisomerase IV subunit A
MTKEISYEGVEQMPIKRFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRI
IYSMSELGLNASAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSY
RYPLIDGQGNWGAPDDPKSFAAMRYTESKLSKMAEILLNELGQGTVDYQP
NFDGSLAEPQYLPARLPHILLNGTMGIAVGMATDIPPHNINEIAQAGVML
LENPYTTLNELLTVIQGPDYPTEAEIITPKADIVKMYEQGRGSIKMRAVW
KKEENEIVIYALPHQASPSKIIEQIATQMRNKKLPLVEDIRDESDHENPI
RIVLVPRSNRIDFNGLMDHLFATTDLEKSYRVNMNMIGLDGKPAVKNLVT
ILTEWLHFRRTTVVRRLSYRLDKVLNRLHILNGLMTAFLNIDDVIEIIRH
QDEPKAELIERFALTGIQADAILNLRLRHLAKLEEHQLQAEQHQLEHERN
ELQRLLASDRRLNNLIKQEIQQDAKAFVSPRRSPLIERAEAKAIAESDLT
PTEDITVILSEKGWVRCAKGHDIDVQGLSYRAGDGYLAHTRGRSNQPVVF
LDSTGRAYTIDPTTLPSARSQGEPLTSKISLPEGASIQQVLMANPESKML
MASDAGYGFICTFNDLISRNKAGKAVISLPENAKILVPQWIENSDELSIV
AMSTINRMLVFPLTELPTLTKGKGNKIMNIATQAAKEGKELLARLLLIKS
NQSLVFMAGKRKITLKPADIDHYRGERARKGTQLVRGLNVNSTVTIIE
>HD0870 parE, DNA topoisomerase IV subunit B
MSDKRYGADQITVLKDLEPVQLRPGMYTDTSRPNHLAQEVIDNSVDEALS
GFATQIDVILHSDNSLEVIDNGRGMPVDIHSTEQISGVELILTKLHAGGK
FSNKNYTFSGGLHGVGISVVNALSEQVKIKIKRDGNIYQIAFANGAKTEE
LHVVGSCAKKQTGTSVHFYPNPKYFDSPRFSVSRLRHLLRAKAVLCPKLT
INFTDHINHNQESWYYEDGLADYLSEALAETESLPNPPFIGNVTSETEAV
SWALTWLPEGGELLAESYVNLIPTAQGGTHVNGLRNGLLKAIVEFCEIHN
LLLKGIKLTADDVWNRCAYVLSLKMQEPQFAGQTKERLSSRQASSYVDNT
LKNAFSLWLNQNVQVGKSIAEMAIASAQSRLRAAKKVVRKKLVSGPALPG
KLADCTAQDLTRTELFLVEGDSAGGSAKQARDKEYQAILPLRGKILNTWE
VSSDQVLASQEVHDIAVAMGIDPDNDRLDELRYGKICILADADSDGLHIA
TLLCALFLRHFPNLVRQGHVYVAMPPLYRIDIGKDEVHYALDEVEKEAIL
ARLAHKKAKPNVQRFKGLGEMNPSQLRETTMDPSTRRLVQLVLDDSEEDQ
QDDALNTFAIMDMLLAKKRSEDRKQWLQKRGNEAALSV
>HD1236 polA, DNA polymerase I
MAQIAQNPLVLVDGSSYLYRAFHVFNYLTNSGGEPTGAMYGVLNMLRSLV
NQVNPSHIAVVFDAKGKTFRDDLFEQYKSHRPPMPDELRAQIQPLHNIIR
ALGIPLISIEGVEADDVIGTLAVQAAQDGKEVLISTGDKDMAQLVNQHIM
LINTMNDSLLDREGVIEKYGIPPELIIDYLALQGDASDNIPGVKGIGEKT
ALALLQGIGSLQTIYANLDRVATLSVRGAKTLATKLVAEKQAADLSYLLA
TIKTDVALDMTHHQLTPSAQRREELIALFERYEFKRWLNDVMNDINPILK
NVSDNDKKTTLNHSTDLQAVQNTVFDVPNKKIATVKIDRSQYQTITTELQ
LTEWMAKIEQAKLVAVDTETDNVDAMSAHLVGISFSLSNGEACYIPLAHT
QQISVQPQQEDLFAETDNDAITQFQLASNQLNLTACLAQLKPLLENVEIK
KVGQNIKYDLTVFANHGIELQGVAFDTMLESYTLNSTGRHNMDELAERYL
DHKTIAFEDIAGKGKNQLTFDKIAIETATEYAAEDADITMKLHQQLITSL
AKTPSLIKLFNEIEMPLVNVLARVEQNGVLIDSDKLLAQSKEMEQRLAEV
EIAVHTAAGQAFNLASTKQLQEILFEKLALPVLKKTPKGAPSTNEEVLEQ
LAQQGHLVPKLLSEHRALSKLKSTYTDKLPKMINQHTGRVHTSYHQAVTT
TGRLSSSDPNLQNIPIRTEAGRRIRQAFIARDGYKIVAADYSQIELRIMA
HLANDEGMITAFANGQDIHQATAAEIFGLSLAEVTSEQRRSAKAINFGLI
YGMSDFGLANQLAISRDEAKEYMARYFQRYPNVQQFMRDIRESASVKGYV
ETLFGRRLYLPEIKSNNAIRRKAAERLAINAPMQGTAADIIKIAMISIDK
QIRADQNIKMIMQVHDELIFEVKQECIEYYTGLIKTEMEKAIAMKVPLIA
EVGVGANWDEAH
>HD0623 priA, primosomal protein N'
MAVVKGARVQVPFGQQIKVGIVVDLPSTTDIPQSKLKPIHAVLDHQAIFD
PEIWQLLHWAASYYHAAIGEVLASALPVKLRNGDAAEYVENDYFRVTELG
QQRLVSPENKRSKKQYDLLSRLAEIAGFFEKPAGVSPSVWKALLEKGYLA
KVVPTCQRKSWQQSLANRPLVNSQSRLVLNQQQTLVVSRLNACQNFETFL
LNGITGSGKTEVYLQVIEQILKQDKQVLVLVPEIGLTPQMVNRFKTRFNV
EIDVLHSNINETMRLKVWLKAKNGESAIVIGTRSALFTQFQRLGLIIIDE
EHDHSFKQQEGWRYHARDVAIFRAKCLNIPIILGSATPSLESVYNVKNGK
FTQLLLSTRAGNAEIAQQQLIDLKTQRITAGLSDRLLMLMQTHLQKGNQV
MLFLNRRGFAPVLLCHECGWICECDACEKPYTYHQKQRVLRCHHCASQRV
IPRQCGYCGSTNLITTGIGTEQLEQLLSEYFPTYQISRIDRDSTGRKGAL
EHHLNAIQTGKSQILIGTQMLAKGHHFPNVTLVALVNVDSALFSTDFRAE
ERLAQLYLQVAGRAGRAEKTGEVVLQTHYPDHPLLKCLLKDGYNAFAEEA
LKMRQVMALPPFTAQVLFRATGKQSDKVEHLLQNLTAYFQHKSVELGIEG
IQISPPFSAIVAKKAGYYRWLLLIQHQSRSAIQQLLNVFDQEKSALNLPA
NIRLSLDVDPYDMS
>HD1046 priB, primosomal replication protein n
MNQRKPANNSLIDNCLTLTGIVTSIVKQSQSPLGIPNYSFWLEHRSNKME
VNLERQVWCKIQVILNGCQFSLITQQIKLGDKVKISGFIHTHKDYNGLSK
LVLHTEQIEFIDQEKPNGTLFPSS
>HD0732 radC, DNA repair protein
MTPSELMPREKLLTYGANALTDQELLAIFLRTGIKGLPVMQLANQVLTTF
GSLRALLTADLNAFCQIKGLGQTQFIQLQASKEMTKRYLAQQMQMCETIN
TPHLAIMYFQTELEFEEREVFMVLFLDNQNRLIKKEKMFYGTINQATVHP
REIIKEALKCNAAAIIVAHNHPSGNCTASQADRQLTQKIKAACHLVEVRF
VDHIIVGKGSYFSFEEERFHQNN
>HD0392 rdgC, recombination associated protein
MFWFKNVMIYRLTNALQLASNELEPLLQQHRFIGCSQSEMSKFGWTAPLA
KTEQLHFCHTKQFLLISHKEDKLLPANVIKAETEERIALLEEKENRKLKK
TEKQAIKDDVIAMLLPRAFSKHQFTAIWLDLDAQLVYVDAASSKRAEASL
ALLRKTLGSLPVVPLSFVQLPAEVMTNWLAKGHTPNWLTLLEEAELKSFE
TESVIRCKKQELESDEICYHLQAGKLVTKLAIEWENHFSCVLNNDATLTR
LKFAGEIIEKNDDILKEDIAQRLDADFLLMTEELRLFTQKLIEEFGGIKE
>HD0410 recA, RecA protein
MAADKKAQKNTATKQIDPEQKEKALAAALAQIEKQFGKGSIMRLGDTQAL
DIEAVSTGSIGLDAALGIGGLPMGRIVEIYGPESSGKTTLTLSVIAQAQR
IGKTCAFIDAEHALDPVYARKLGVDIDALLISQPDNGEQALEICDALVRS
GAVDVIIVDSVAALTPKAEIEGDMGDSYMGLQARLMSQALRKLTANIKAT
NCLVVFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRSGVVKDGD
EVVGSETKVKIVKNKVAPPFREVQFDIMYGEGIARMNELLILAEANGFIQ
KAGAWFSYNGTKIGQGKNNAIKWLKENPEVAEKIEQEIRNLLILTPDQPA
SEKLELDVNDESDFDEAFEEQE
>HD1076 recB, exodeoxyribonuclease V, beta subunit
MNNLDPLALPLNGTSLIEASAGTGKTFTMANLYLRLLLGIGCQPLTVEEI
LVVTFTKAATEELRDRIRRNIKACREFFCDYDPNQIDQNKDNFYSQLYER
VDNLDEAKLRLRIAEREIDLASIFTIHSFCQKILSQFAFDSGIRFDNDWQ
TDESHLLQQLSEEIWREQFYPLSLQECEIIYNELEEPLKALKMVQSFIGI
ELPALSAEQKRIFTPELSTRYLIEYKNFLQQIKQYWQINGNEIVTIINAE
LKKIYKTGEKKALNRTSYQPRYLATYQSELDNWANSMDLTLPKNFERFCQ
DFIASKAQEGAVTTLSHPHFQQNQQWLNIYQQKYSDKKKPFLLYQFLVRL
RAKLADYKITHSEKSFNDMLTLLNQALKSDNGDQLAAKVRCQYPFAMIDE
FQDTDKQQYEIFSKIFMQGEQTNRGFIMIGDPKQSIYQFRGTDIFTYLNA
ANEVQEKRTLPKNWRSLPSIVQAANRLFSFPPESPHSPFLYDEIGFQQAI
AKETDTELKGLAHCIFYLQPKFDFQRAAEHCAYQIQQQLKQMEAGKFGLK
LTDNPAIQPFQAKDIAILVRNKKEANYVKQALANCGIRSVYLSEDRSVYQ
SDLAQDLLWLLYACLNPYQQSTLLTVVGSSLWGLSATEIYQLKHNEIAWD
NLVERFVDYQHIWQRQGILPMLHQLFLCEGLIKRLCANPQTSDRNLTDLL
HLAELLQNAMSSLENESALVRWYEHQLADDNKNEAHQLRLESENQLVQIV
TIHKAKGLQYPIVWLPFIGEERGYTRKKDKNLKLYRDATNQECWLFGHAD
EQTKTLLEKGEHAEDLRLLYVALTRAESQLNVILPQQFTENWNAVHYLLS
DGELFLNKQFNPKTTVDYLDNKQFDDYIKLDEKALVDDWRPTIASQADPI
VRTFDAIIRKEGQITSFTALHHYHQAGYEKQYPARNVLIDTADHDSQQLL
SDLMLEPISEAEQAYSVYNFPHSAKVGTILHYFFEKADFQQALELAQVAT
ICEQLNIEEQWQTVLQQWFTRVFATPFAEQQIALQDISCDQRLNEWGFYL
RLTNEHALKELNELLQKYGSISKDLPELQLPQLAGYVRGSVDCLAKVNGK
FYVIDYKSNFLGSSAQDYSQQNLVKTIGQYRYDLQYLLYSLAVHRYLRSR
LAEHYDYERDFGGAVYLFLRGMNGTANSGVFFDKPSLTLITKMDELFC
>HD0186 recC, exodeoxyribonuclease V, gamma subunit
MFTVYFSQKLSSLAKLFIQLQQSNPNPNPFEAEIVLVQSVGMAQWLQMQI
ANQIGIAGNYEFPFPTSFLWQQYRVLFPELPTENIFERETVTWRLIRLIP
DYLSLPEFQSLQHYLTKDSRQYQLKLYQLAKKVADLFDQYLVYRPHWLVH
WENDRLEIVRDEILNHANLKVKNSEDIWQNLSWQAILWRALINDIKLDCD
ESVFVTSHRAYLQEQYFNKLDNLTEIEKSKLPKRVFIFGISSLPATQLAV
LKKLSEHCQIHLFFLNPSAEYWGDNVEDRVLEKLALKQKMTAKELEALFV
QKNNQLLSMWGKQGRDFLAQILEQEPDQILDVFDACEGDSNLIKLKNAIL
SFDNPQQLLLASQDDSVQFHSCHSIMREVEVLHNRLLQMFAQDPTLAAKD
IIVMSADINQYAPYIEAVFSRYMKEDKRYIPFAFADQKAITVDPILMSFM
SLLNLKESLFDAESLLDLLDVNAIRERFQFQLQDIHIVRHWVNQAGIRFG
LTIDQSEWQNYNAWQNGLTRLLMGISLREENGIWQDSVAFNESYGLSAEL
VGYLANFIEKLSAWHQIIQQKQPIEVWQKQLSLLINDFYQENEESVHAIN
LLNIALAEIIQKITDAKFEQQIDIEIISLLFNEKLNSQQNNLNFLVGKVN
FCTLLPMRAIPFKVVCLLGMNESDFPRAQTVNSFDLMQYASKKGDRARRD
DDRYLFLEALLSAQQFFYISYIGQSNINNKQHLPSVMVSQLLDYFAEYLA
PQSLALVSPQGKFSEQHFFAEMVQQHPLTVFSLNNFSETNYAYDREWLTM
TQTEKMQEFCPGEFNSNAELPTEIQLEQLIKFVVNPVQYFFNQHLGIYFR
DNNKQIEESEKFVLNALDRYKLRDKLVCLDDDLIQQMFEQEKLKGNLPAA
NFAQLAQQKIVASVNIIKDELVGYLTESEILEVDQTFLINGIELRVVGNI
CHRFGDEIVFWKVSGLKDKDYIRYWLYYLFLRIQSQPLKLKIIYLDENKK
KVFQFNEISQDDAEKQLRIYLTDYLSSFSCLKWAMFEGLDDYFKNLNKAE
NIEHYCQENLEKLIGKEFFNSRYLKRILNQSVMLDYGSIHSTTLQWFELM
QTSKKSPHSKENE
>HD0626 recD, exodeoxyribonuclease V, alpha subunit
MHMLTLLHALKNRNLIAELDYQFAKMIDQKQQVYAYTPLEKNLAVLLAAL
ISFNIMQGHTALRLDSSLANNPFGLNVKEEASLWQEILQKIEQIPPVKWP
EILKDHIAFSHSPTQTAPLIFQNGLLYFYRYWQAEYNVATYLKEAVETTV
ANQDLATDKKILDRLFPEPTTQIDWQKIAVATALRKKFSLISGGPGTGKT
TTVSKLLAALQEKQLHSTKGSLKIALVAPTGKAAARLKESITQSLAHLKL
TFDIPTPVSTIHRLLVMRPLQDKPFYHKQNPLHLDLLIVDEASMIDLFMI
EKLMNALKPTTRLIMLGDKDQLASVEAGAIMGELGHFMTQGYSTAHCTAL
NELTGYQLNMMNQVPTICDSLCHLQKSYRFDANSGIGALAKKVNQQQADE
SWQTFLNPQFTDLEKIEYPNKNQFTETHLWTQECVNLIVKKAVQCYQHYL
TLVKQREKDPASVSVDAIFIAFQRIRFLSALRIGELGADRLNQRIAEALK
KAKLINFINSRDRYLGKPILITQNSPENNIYSGDIGIILPDENGMLRVYF
DTKLESTHLSVSLSRIPESEPAYVMTVHKSQGSEFEQTFLIMPLNNAPVV
TKELIYTAITRAKKQFTVFCNKKNWYQGIQTNIQRQSGLKEQLINIFC
>HD0849 recF, DNA replication and repair protein RecF
MPLSRLLINNFRNLQAIDLELSPDFNFIVGHNGSGKTSLLEAIFYLGHGR
SFKSHISNRIIHHHAENFVLHSKIDETQHQWSVGLQKNRAGDTLLKINGE
DGKKIADLAHLLPMQVITPEGLTLLNGGPSYRRAFLDWGLFHQHLEFYSY
WANLKRLLKQRNAALPQVKSYSELKAWDIELVRLAHLVTKMRTEYAEALR
PEIEKTCRFFLPELPIRVSFHQGWENGADYADVLRQGFERDQNIGYTMVG
PQKADFRFKANGLPVEDVLSRGQLKLLMCALRLAQGEYLVTQKKRQCLFL
IDDFASELDPMKRELLAHRLRETGSQVFVTAITAEQLNQMHWQEYAQDKL
FHLKEGKLKT
>HD1921 recG, ATP-dependent DNA helicase RecG
MEKQLLNDIPLISLAGVGTAIAEKLHRLAIYNVQDLLFHLPIRYEDRTRI
TAIADVRPAHFVTIEGQVQLTEVEYSRRAILAVVLSDGTSKIMLKFFNFN
AGMKNGFAVGVRVKAFGEIKRGRFMAEIHHPEYQIIRHNQPLTLAESLTP
IYTTTEGLKQNSLRKLTEQALALLNKIQIAELLPAQYNPYQYNLTEALQL
LHCPPPNISAETLAQGEHPAQKRLIFEELLAHNLAMQQLRLGVKQLYATP
LHYQTELKTRFLANLAFQPTPAQTRVTAEIENDLAQAVPMMRLVQGDVGS
GKTLVAALAALLAIDNGKQVALMAPTEILAEQHATNFTQWLKPFDINVGW
LAGKIKGKARTAQLTAIEQGEVQMIIGTHALFQESVAFHDLALVIIDEQH
RFGVHQRLTLRAKGAKTINGQEIYPHQLIMTATPIPRTLAMTVYADLDTS
LIDQLPPGRTPIKTIVIAEERRAEVVQRVYHACKNEGRQAYWVCTLIDES
EVLEAQAAAAIAEDLQGALPDLRIGLVHGRMKPQEKQTIMAAFKAATLDL
LVATTVIEVGVDVPNASLMIIENSERLGLAQLHQLRGRVGRGATASHCVL
MYKPPLGKISSKRLQVMRDSQDGFYIAEKDLEIRGTGEILGTKQTGMAEF
KVANLMRDRKLIPLVQHSAKQIISEHPALAEALIARWLNQKADYCNA
>HD1342 recJ, single-stranded-DNA-specific exonuclease RecJ
MQKLIKQRPQLTTLTLSANPLLNRLYQSRNIATLHDLERGLEYLHRPQLL
ANIDQAVALLIEAFQTDMRIVIVGDFDADGATSTALTILALRQLGFAKVD
YLIPDRFSQGYGLSLAVAEAVLAKGADLVITVDNGISSFEGVELLKSQGI
KVLVTDHHLPAEKLPDADALINPNLVNCDFPSKALAGVGVAFYVMLALRS
RMRELALFKVAEPNLAELLDLVALGTVADVVPFDHNNRILVHQGLNRIRS
GCCRPGIRALADIAKRDLSSLQAADLGFAIAPRLNAAGRLENMSLGVELL
ITDNIALAHQLAFELDSLNQKRKAFEQEMKAEALAICAKLPSLMQKEQAH
GIVLYQADWHQGVIGILASRIKDQFHRPVIAFAQESEDSVYLKGSARSIA
GLHMRDVLERIDSTYPNLIVKFGGHAMAAGLTIHQDDFSTFQTVFDEIVD
QFISPEQLQGVIYTDGELQADEMTLEIAELLQSAGPWGQHFPEPLFEGQC
RILQQRILAGKHLKLMIQFNDRFELYDAIWFNVDLRTFPDLSIKHAQIVY
KLDINEFRGNKNIQLRVESLIPL
>HD0815 recN, DNA repair protein
MLNQLTINNFAIVHHLTLDLNEGMSVITGETGAGKSIAIDALSLCLGYRS
ESSMIRNGANKADIIATFSMQPASPAYLWLKQHELLDEDNPQECILRRMI
NQEGRSKAFVNNRPLPISQLRELGQYLIHLNGQHAPQLLLKNEYQLEVLD
NYTGLHSLLNQMSTQYLAWKKLHKQVKTFHQQCQENESRKQLLQYQVDEL
NEFAIKQGEFEEMEETHNRLSNAEQLTNLSQTVTALLNENELNVEQMLYK
AVRHLENLVEMDTQYQSALMMLNEALIQVQEANSEVSVLANKIEQDPERL
SILDERISKTIQLARKHYVTPENLWRQHNTLQTELEKLINVEENEAQLIL
AEENAYQQCLTLADTIYQQRLASAEKLAEQVTKQLKHLSMENGQFFINIQ
HDPQKLSVNGADFVTFNLQSNLGQPPQPLAKIASGGELSRISLAVQVLTA
NKLSTPTIIFDEVDVGISGPTATTVGKLLRQLGQKCQVLCVTHLPQVASY
GNHHFNVQKVVENNQTETKMTLLTQAERVQSLARLLGSSQITDTALANAQ
EMLDLATLP
>HD1604 recO, DNA repair protein RecO
MIEQWQRGFVLHRREYRETSLLVDFFTEQHGRITLLAKGAKRVRSPLKAV
LQPFTPLLLRWSGKGDLKVLTKAEPAALTLPMHHTALYSGLYVNEILIRV
LENQTAYTALFQHYLQCITQLATQPEKLQVTLRTFEFHLLKALGYGVNFS
ICAATGQPIDAGMYYQFSENKGFFASLLRNHYTFCGKDLLAFEKGDFSDT
DTLQAAKRFTRIALRPYLGSQPLKSRELFQAILPHKLKSS
>HD0475 recQ, ATP-dependent DNA helicase
MQELFSKAKDVLNNIFGYQHFRNGQQEVIEAVLTGQDCLVIMTTGGGKSL
CYQVPALCLEGITLVISPLISLMKDQVDQLLTYGIEAGYINCSQTFEEQQ
RVEQKALSGQLKLLYLSPEKVMTQAFFSFIFHCKISLIVVDEAHCVSQWG
HDFRPEYALLGRLRKTFVGIPLMALTATADPTTRKDILQHLCLTNPYTYL
GSFDRPNIRYTVQQKFKPLEQLTQFILRQQGKSGIIYCNSRKKVEEISEK
LAARKISVMGYHAGMPVQQREMVQEAFQRDNIQIVVATIAFGMGINKSNV
RFVVHFDLPRSIEAYYQETGRAGRDDLPSEAVLFYNPSDYAWMEKTLLEE
PETDQRQIKQHKLQAIGAFAESQTCRRLVLLNYFGESRQAPCQNCDICLN
PPRQYDGTLDAQKVLSVIYRTGQMFGVQHIIAVLRGMNNQRIREFNHDQL
SVYGIGKDQSAPYWLSIIHQLIHLGLIKQNITNHSSLQLTEEARPVLRSQ
KLALAMPRLTFSANAYIQKQASVRYDKDLFARLRFLRKQIADKENIPPYV
VFNDATLQEMAEYLPLSNVEMLEINGVGERKLERFGGAFLNLIKEHCQNR
K
>HD0325 recR, recombination DNA repair protein
MQTSPLLENLIDALRALPGIGPKSAQRMAYHLLQRNRNGGLNLAKALNEA
MTHIGHCNACRTFTEEEECTICKNPRRQISGQLCIVEMPEDIQAIEQTGQ
FSGRYFVLMGHLSPLDGIGPREIGLDLLQQRLEQESFHEIILATNPTIEG
DATANYIAEICHLYNVKVTRIAHGIPVGGSLEMVDGTTLSHSFAGRRDFL
L
>HD0571 rep, ATP-dependent DNA helicase
MKLNQQQQQAVEYVNGACLVLAGAGSGKTRVIINKIAYLIAHCNYTPKQI
AAVTFTNKAAREIRERVAHSIGKENSKGLTISTFHTLGFEILKREYKLLG
FKAGMTLFDEHDQMALLKHLLPEKVTEDKDLLKALMSQISYWKNDLLSPE
MVINHCHSERDRIFSNFYQLYQNQLKAYNALDFDDLIMLPVLLFRQYPEV
KARWQQKIRYLLVDEYQDTNTSQYELIKLIVGQNGHFTVVGDDDQSIYSW
RGAKPENMQRLRDDFDLNVIKLEQNYRSSQRILHSANILIDNNDHLFQKR
LFSTLAEGEKLNVIEAKNEEHEAERVVGELIAHRFANKTQYKDYAILYRG
NHQSRLLEKTLMQNRIPYKISGGTSFFARVEIKDMMAYLRLIVNQNDDAA
FLRIVNTPKREIGAATLEKLGQLANEKHISLFDTIFDFELIQRITPKAYQ
ALQNFANWIVMIADQAERADPLEAVKQLLANIQYEAYLYEHATTPKAAEM
QSRNVQTLFEWVQNMLEGDELNEPMNLIQVVNRLTLRDMLERGEDDDEAD
QVQLMTLHASKGLEFPHVFLIGMEEGILPHQTSIDEDNVEEERRLAYVGI
TRAQQTLTFSLCKERRQYGEIIKPEASRFLMELPQDNLVWERDRPKISEE
QKIAKVSNNVANLMAMLKANQK
>HD1206 rnhA, ribonuclease H
MKSVNIFTDGSCLGNPGPGGIGVVLRYNQHQKKVSQGYFQTTNNRMELRA
VIEGLSMLKEACNVTLYSDSQYMKNGITKWIFKWKKSNWKTANGKAVKNK
DLWLLLDEKIQIHYIEWKWVKGHSGHYENEICDELAKLGANNPTLEDVGY
QPA
>HD1026 rnhB, ribonuclease HII
MRTNFIYHNANLIAGVDEVGRGPLVGAVVTAAVILDPQQPILGLADSKKL
SEKKRILLATEIKQKALCWSLGRAEAEEIDQLNILHATMLAMQRAINALT
IQPDFVLVDGNRIPSLNMPAQAIVKGDSLVAEISAASILAKVARDHEMQI
LDQQFPEYGFAQHKGYPTKLHIEKLAQFGATPFHRKSFAPVRKILGL
>HD0611 rnt, ribonuclease T
MTEQVTDHNLLKHRFRGYLPVIIDVETAGLNAKTDALLELAAITVKMDQQ
GYLVPDQKCHFHIQPFENANINADSLKFNGIDIHNPLRGAVAEAIAIPEM
FKMVRRAIKEQGCQRAVIVAHNATFDQAFLQAAVKRINAKRDPFHPFAMF
DTASLAGLMYGQTVLVKACQIANIAFDGKQAHSALYDTEKTTELFCAMVN
RLKDLGGFPLLNPK
>HD1758 ruvA, Holliday junction DNA helicase RuvA
MIGRLYGKIIEKQPPEMVIDVQGIGYEVLLPMTSFYHLPQVGEEATIFTH
LVVREDAHLLFGFAQKQDRTLFRELIKTNGVGPKLALAILSAMSVVQFAN
AVENEELVKLTKIPGVGRKTAERLLVELKGKFKGIAQTDFFVEHSHETMV
ATYEIDASEEARDALLALGYKLTDAEKMIKKVHKSGATSEQLIRDALKAS
L
>HD1757 ruvB, Holliday junction DNA helicase RuvB
MIEADRIISASPQREEEVVDRAIRPKLLTDYVGQPSVREQMEIFIKAAKL
RHEALDHLLIFGPPGLGKTTLANIVANEMGVNIRTTSGPVLEKAGDLAAM
LTNLEPYDILFIDEIHRLSPAIEEVLYPAMEDYQLDIMIGEGPAARSIKL
DLPPFTLVGATTRAGSLTSPLRDRFGIVQRLEFYNVDDLTSIVKRSAACL
NLNLSADGAYEVARRSRGTPRIANRLLRRVRDYADVRNNGVITSEIAKQA
LVMLDVDPQGFDFMDIKLLQAIVERFDGGPVGLDNLAAAIGEERETIEDV
LEPYLIQQGFLQRTPRGRIATTRTYAHLGISLSE
>HD0593 ruvC, crossover junction endodeoxyribonuclease
MPIILGIDPGSRITGYGIIRQQGRQLEYLGSGAIRINASDLPSRLKHIYA
GVTEIITQFQPDMFAIEQVFMAKNADSALKLGQARGTAIVAAVNHDLPVF
EYAARLVKQTVTGIGSADKLQVQDMVTRMLQLSAKPQVDAADALAIAITH
AHSIQHSLIVAKQNNPSITTHKEQILALMKTRYSRGRFRLKG
>HD1412 sbcB, exonuclease I
MNNDFTFFFYDYESFGINPATDRPAQFAGIRTDREFNIIGEPVMFYCKQT
NDYLPSAEAVMVTGIAPQLCNEKGLSEPEFAQRIHHEFSQPNTCIIGYNN
IRYDDEMTRYTFFRNFYDPYEYCWKNGNSRWDLLDLVRACYALRPSGIEW
PKNEKDEPSFKLEHLTKANAIAHQNAHDAMADVYATIEIAKLIKQKQRKL
FDFFFENRSKKALEKLIDPAELTPLVHVSGMLGNYRGNTALIVPLAWHPT
NQNAVVVCDLSSDIQGLLNDTAEVLKQRLYTKRDALAEHESPVPLKLVHL
NKCPILAPAKTLLAENAMRLAIDRSQCLLNLAKLQAQKAVVREKVIEIFN
DERIFAPSNNVETTLYDSFFSNGDKNNLAILRTLKPEQLAEHGLKFADKR
VEPLLFHYRARHFPNTLTRAEQIKWQKYCHQQIDAKTEQFSQEIANLFER
YADHADKVKLLEDLTAYATQLSQYTLPLPSAAQKNQLMAELNKVAEQQID
KAIKLDLLKTLIK
>HD1270 seqA, DNA replication inhibitor protein
MKTIEVDDELYHYIASRTQAIGESASDILRRLLRLPSSPQPFVLVQPNIA
EELNASTKSTNQAKKQTNIEKTVQKFERVLKSDTFVNETKNVRRFLMLLS
ALHISDQQGFANATAVVTGTERTYFATNEDMLLRCGNGVKAKKIPDSPFW
VVTNNSTARKGLILTAVMQSMQMPSHLIDRVRVLFA
>HD1888 smf, smf protein
MKQLALLKLLQIPQLGPQRIARLLNQIDFAEFCQYSKKELQQMGWNDKQI
QCWFQPEMRWIDRAITWAEQPNQRLVTLFDKDYPFLLQQISTAPPLLFVR
GSVASLTLPQIAIVGSRDYSPYGEYWASYFTRELIEQGFAVTSGLAIGID
GFCHKQAVKQQAVTIAVLGSGLDQVYPARHKKLAEQIIANGGALVSEFFP
DQPPLAEHFPRRNRIISGLSLGTLVVEATINSGSLITARYALEQGREVFA
LPNTAQNPYAVGCHQLIKEGAILTESIADILQAIQHQYRPSAKLVNANSM
NNPPNIANQQLTIPLTDKILPDLTACQQQIMQNISFTPIAIDDLAKATDI
AVEILLVELLGLELLGMIKQVCGGYVVTQA
>HD0213 srmB, ATP-dependent RNA helicase protein
MTTENNIVTFAELDLAPALLKALAKKGYTRPTSVQAETIPYALAGRDLLG
SAPTGTGKTAAFLLPAIQHLLDYPRRKPGAPRILILTPTRELAMQVAEEA
QAFAAFTTLSIATITGGVAYQNHGEVFNSNQDIVVATPGRLMQYIKEENF
DCRAVEVLILDEADRMLQMGFGQDVEKIVAETRWRKYTWLFSATLEGELL
TDFSERILTDPLHINADPSRRERKKIQQWYYHADNVEHKTKLLARIITTI
EMEKVIVFVRRREDVRTLSDTLRKRAIRSTYLEGDMAQTQRNQAITRLKE
GGVNVLVATDVAARGIDIDEVDYVINFDLPYSEDTYLHRIGRTARAGKKG
SAISLVEAHDYKLLGKIKRYTQEALKPRIVEGLEPRTKAPKDGELNSTSK
KAKARLKKRKEAKKIEAKTKLKVRHKESKNIGKRRKVATTNA
>HD1285 ssb, single stranded DNA binding protein
MAGINKVIIVGNLGNDPEMRTMPNGEAVANISVATSESWTDKNTGERREV
TEWHRIVFYRRQAEVAGQYLRKGSQVYVEGRLKTRKWQDQNGQDRYTTEI
QGDVLQMLGGRNQAGDVATHQNQAGWNAPASTQNNYNQGASNYNPNQTQA
YSAPQTNRTKPAAESVMDNFDDDIPF
>HD0962 ssb2, single-stranded DNA-binding protein
MAGVNKVTILGNLGSDPDIRAMPNGDLTATVSVATSRQWKDQTTGETKEL
VEWHRIAFFRRLAEIVEQYLHKGSKIYVEGYLRTRKWTDDNGIDRWTTEI
IGEELQMLDSKPKDGHAANKSSKKSTTQQPEVDDDIPF
>HD0908 tnpR, transposon gamma-delta resolvase
MRLFGYARVSTAQQDLTIQVQTLKDAGVEEHRIFTDKRSGKDLKRDGLEL
LKLKVEPGDMILVKNLDRLGRDAADMLNLVKYFNQLNVYIKFLDNGFSSE
GTTGLLLITILAGVAQSERARILERTNEGRLAAMASGVKFGRKRKVPRDK
IIKLFEEGKKPMEISRLLNVSKSMVYLVLKESSNKANWEKENRV
>HD1385 topA, DNA topoisomerase I
MGKSLVIVESPAKAKTINKYLGSDYIVKSSVGHIRDLPKSGSEKAEKVKP
ISTKGLTAEQKAKVKADKARAALVKRMGIDPYHDWKANYQILPDKDKVVS
ELKSLAKKADHIYLATDLDREGEAIAWHLREVIGGKEEHFSRVVFNEITK
NAIQKAFEKPEQLNLDRVNAQQTRRFLDRIVGFMVSPLLWKKVARGLSAG
RVQSVAVKLLVEREREIKAFQPEEYWDILANTLAENGRLPLALTSYKGKK
FVAKNQTEADNAVKALQCCEFVVSDIDKKPTSSKANAPFITSTLQQTAST
RLSFGVKKTMMLAQRLYEAGYITYMRTDSTNLSQDALTMVREYVENHFGT
DYLPAKPNFYSSKENAQEAHEAIRPSDVRVKMSDLKGMEKDAERLYDLIW
RRFVACQMPPARYDSTSLTITAGDYELKAKGRVLRFDGWTKVLPIQGKTA
EDQELPAVMLNEKLTLAEIIPSQHFTKPPAHFSEAALVKELEKRGIGRPS
TYATIISTIQERGYVRTENRRFYAEKMGEIVTDRLDESFSDLMNYDFTAN
MEETLDQIAKGNKNWKEALNSFFSDFSEQLSKAELDELEGGMKPNSLVVT
DIDCPTCARKMAIRTASTGVFLGCTGYALPPKERCKTTMNLILEAELFNV
LDEESEAKALLARKRCPKCGSAMDSYIIDPTRKLHICGNNPNCDGHIVEQ
GSFKIKGYDGPIVECDKCGADMHLKLGRFGKYMACTACDNTSKILKNGEV
APPREEPTHFPELKCEKSDAYFVLRDGASGVFMSAHNFPKSRETRAPKVA
ELALYRDRLPAKLQYLADAPQQDPEGNQAIIRFSRKEKRQYVTSEKEGKA
TKWIVDFIDGKWLERHK
>HD0954 topB1, DNA topoisomerase III
MRLFLCEKPSQGNDIAKVLGATKRGDGCLSSGNGQVFVTWGIGHLVEQLN
PEQYHPEWKKWSLETLPIIPGQWQLAPKKETKKQYNIVIKLIKQASEVII
ATDIDREGETIARELLELAGFKGKIQRLWLSALDDASIRKALALLKPNHE
TLPLYYAGLGRSRADWLIGMNFSRLFTLLAQQQGYQGKPLSVGRVQSPTL
ALVVNRDREIQNFVPKNHFTLSALLYSGQQNFTAQYVIPEQYCDEDGLCL
SQQTIQAVNQQVQQAGVMKVESVETKREKQSAPLLFALSDLQSEANRLYG
LGAQQVLDIAQSLYETHKATTYPRTDCGYLPESQLAEAPQVIKSLISSDS
RLQPLTSKLNLTQKSRAWNDKKITAHHGIIPTAVKVDIGKMSEEEFRLYD
LIRRRYLAQFLPVSQSDKTQIVLKCGVHTFISRGNVLIATGWKMLCGAPM
TKRNGKNGQFWGCTAYPDCQHIENIGKSTARRKGTANSQNISQQIANLRK
LVQ
>HD1276 topB2, DNA topoisomerase III
MMRVFLAEKPSLARAIAEVLPKPHIRGDGYIQCGEHDYVTWCIGHLLEQA
EPDAYDERFKTWRMEHLPIIPQQWKLIAKKQTAKQLKVVEKLVKKAEILV
NAGDPDREGQLLVDEVFNYLNVPASKKSQIQRCLVSDLNPTAVSKAINKL
QNNCDFIPLATSALARARADWLYGINMTRAYTLQGRWVGYQGVLSVGRVQ
TPVLGLIVRRDLEIEHFTPKDYFEVLAHIIVPTTQERFTAHWQPSKACED
YQDEEGRVLSRALVENVVKRISDQTACVTDYQDKTESEIAPLPYSLSALQ
IDAARRYGLSAQAVLDICQTLYETHKLITYPRSDNRYLPNEHYNERFNVV
AAIAHHLTEYQQKPEVVNLALRGRCWNDKKIEAHHAIIPTARQGNLRLTE
NEKRIYRLIACQYLMQFCPDAEYSKRKITLDIAGGTFIAQARNLVTAGWK
ALLGKEDCDEMIEPLLPAVQKAQRLHCEKREIISKKTQLPRHFTDASLLS
AMTGIARFVQDKQLKKILRETDGLGTEATRAGIIELLFKRGFVTKKGRNI
QSTETGRVLISALPDIATQPDMTAQWEMQLKQISQKQVSYQQFMHQLTTK
LPELLHTDRQKLQKLNIITPLKLPAKRTHTKASIMADEK
>HD0917 traC, probable DNA primase
MKKYIQPQPKDLYQQITDQIIDELKTGTMPWIRPWDNSSPPMVIPCNGET
GRHYSGINILLLWMSTMRQKFTQRKWVTFQGAQHLGGKVRVGEKSTVIIF
YKQTQLEETDDEGNVVFDENGEPKMKTSIFIQGHHVFNIEQCDGLEKCHE
TFPEHKPNPNKVARPELDELPINMGMQVYNRLQSKACYIPARDCIIMPDF
KKFHSADDYYATLLHECGHATGHKDRLDRDGVTRFDKFGSEQYAFEELIA
ELTSAFTCANVGVANNISQNAAYIDHWIQMLKSDKKAIFRASSQAREATQ
YLLDIFHNEEQLVA
>HD1066 ung, uracil-DNA glycosylase
MNSWTEAIGEEKVQPYFQQLLQQVYQARASGKIIYPPQHEVFSAFALTDF
KAVKVVILGQDPYHGPNQAHGLAFSVKPSVVPPPSLVNIYKELAQDIAGF
QVPSHGYLIDWAKQGVLLLNTVLTVQQGMAHSHATLGWEIFTDKVIAQLN
DHRENLVFLLWGSHAQKKGQFINRSRHCVLTAPHPSPLSAHRGFFGCQHF
SKANAYLQSKGIATINWQLPLVV
>HD1286 uvrA, excinuclease ABC subunit A
MKSIDIRGARTHNLKNINLILPRDKLIVITGLSGSGKSSLAFDTLYAEGQ
RRYVESLSAYARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGT
ITEIHDYLRLLFARVGEPRCPKHDLPLVAQTISQMVDRVMQEPEGKRLML
LAPVVRNRKGEHVKLLENLTASGYIRARINGEICDLSDPPVLELQKKHTI
EVVVDRFKVRSDMMSRLAESFETALELSGSTAIIADMDDPGAPEMVFSAS
FACSECGYSLPELEPRLFSFNNPAGACPTCDGLGVEQYFDPAKVVQNPDV
SLASGAIKGWDRRSLYYFSLLTAVASYYAFDIDTPFAQLPAKIQQIILYG
SSDEIEFFYINDRDDKIQRKHTFEGVLNNMARRYKETESNAVRDELAKYI
NNRACLACQGSRLRQEARNVFIEQANLPEIAEKSIGEALTFFEQLELNGQ
RAQIAEKILKEIRERLQFLVNVGLNYLSLSRSAETLSGGEAQRIRLASQI
GAGLVGVMYVLDEPSIGLHQRDNERLLNTLIHLRDLGNTVIVVEHDEDAI
RAADHIVDIGPGAGVHGGQVIAQGSATEIMQIEASITGQYLAGKQKIEIP
TERIPYDANKLLILSGASGNNLKHVELVIPVGLFTCITGVSGSGKSTLIN
DTLFPLAQNALNRAERTDVAPYQAIDGLAHFDKVIDIDQSPIGRTPRSNP
ATYTGLFTPIRELFAGTQEARARGYNVGRFSFNVRGGRCEACQGDGVIKV
EMHFLPDVYVPCDHCKGKRYNRETLEVRYKGKTIHQVLEMTVEEAREFFD
AIPAIARKLQTLIDVGLSYIRLGQSSTTLSGGEAQRVKLATELSKRDTGK
TLYILDEPTTGLHFADIKQLLAVLHKLRDQGNTIVVIEHNLDVIKTADWI
VDLGPEGGAGGGQIIAQGTPEDVAQQPGSHTARFLTQILAKG
>HD1416 uvrB, excinuclease ABC subunit B
MSKPGKPFILNSPFAPSGDQPSAIKKLTEGLQDGLAHQTLLGVTGSGKTF
TIANVIAQLNRPAMLLAPNKTLAAQLYAEMKAFFPENAVEYFVSYYDYYQ
PEAYVPASDTFIEKDASINEQIEQMRLSATKSFLERRDTIVVASVSAIYG
LGDVNAYMQMMLHLQVGAIINQRDILARLAELQYTRNDQAFQRSTFRVRG
EVIDIFPAESDEIALRIELFDDEIDNLSLFDPLTGHSFGKIPRYTIYPKT
HYVTPRERILTAIDQIKNELTGRQDYFIKEHKLLEEQRITQRTQFDIEMI
NELGYCSGIENYSRYLSGRQEGEPPPTLFDYMPADGLLIIDESHVTVPQI
GGMYRGDRARKETLVQYGFRLPSALDNRPLKFEEFERLSPQTIYVSATPG
NYELEKSNGDIIDQVVRPTGLLDPIIEVRPVASQVDDVLSEIQQRVALDE
RVLITTLTKKMAEDLTDYLDEHGVRVRYLHSDIDTVERVEIIHDLRIGMF
DVLVGINLLREGLDMPEVALVAILDADKEGFLRSESSLIQTIGRAARNLN
GKAILYADRITHSMQKAITETERRREKQQKYNQEHNIIPQALNKKVRELL
DIGQTDKQKKGKQAVKIAEQSASYTPNAPKSRQALEKELKQLTQQMQKLA
KDLEFEKAAAVRDKIGQLKMALLEV
>HD1812 uvrC, excinuclease ABC, subunit C
MSQFNAKAFLADVPHLPGVYRMYDANQAIIYVGKAKDLKKRLASYFRSQV
ASKKIEALVGNIHHIDTTITHSETEALLLEHNYIKQHQPKYNVLLRDDKS
YPYLLLTKHQHPRLTAFRGSKKVAGEYFGPYPNVSAVRESLNLLQKIFPI
RQCEDNYYKNRSRPCLQHQIGRCLAPCVTGYCSQQEYDNQVKWVRLFLQG
KDSQVIDYLMQKMEIAASELDFETAARFRDQIQSVRAVQEKQFVANQRLD
DLDIISIAYQSGLACAHILFIRQGKVLGNRAYFPKVPSHTDLTELADTFI
GQFYLQLNQHRSIPNQIILDQPLTESNALAQLLTEQAGHKVTIITNHVRG
DKSRYLALAQTNARAALSLQLKQSTTIHKRYDALKILLKLPTIKRMECFD
ISHTMGSQTVASCVVFDENGPLKSDYRRFNIEGITGGDDYAGMEQALVKR
YDKPLPIEKIPDIIFIDGGKGQLNRALQVFEKLTVAWDKHKPLLIGVAKG
AERKAGLETLIIGRLKKEIHLPIDSPALHLIQHIRDESHHHAISGHRKKR
QKAFVESGLESIAGVGAKRRQALLKYLGGMQGVKSATLAEIESVPGISKT
LAGVIFDTLHNS
>HD1032 uvrD, DNA helicase II
MDFSLLLDGLNDKQRQAVSAPLGNYLVLAGAGSGKTRVLTHRIAWLMRVE
HISEASILAVTFTNKAAAEMRNRIEYTLSMSSQHRLFGMWVGTFHSIAHR
LLRSHYLDANLPQDFQIMDTEDQLRLLKRLLKLHNFDEKYFPPKQVAWYI
NAQKDKGMRAKDINHHNDANEKKLIQIYQIYQEACDRAGLLDFAELLIRA
YELFKNNRVILERYQHRFQQILIDEFQDTNHIQYDLIQLLAGKTGNVVIV
GDDDQSIYGWRGAQVENIQRFLQDYRQAQTIRLEQNYRSTGHILASANQL
IANNNDRLGKNLWTDKGDGDPVDIYCAFNELDEARFVASQIKQWKEEQGS
LNDCAILYRSNSQSRVIEEALIQANIPYRIYGGMRFFERQEIKDALAYLR
LISNRDDDAAFERVINTPPRGIGDRTLEGLRQLTRSRQVTLWQAVQIAIQ
EQHLSARAASALLRFVELINALEQETTQMSLCEQTDFVIKTSGLYEMYKQ
EKGEKGEVRIENLAELVTATKEFCKPDDAIELSDLTAFLTHASLEAGENQ
ASLHQDYVELMTLHAAKGLEFPRVFIVGMEEGLFPSGISFDEGRLPEERR
LAYVGITRAKQRLTISYAELRRLYGKEERHIASRFIAELPAEHIREVRLR
GSINRAASFTQSGAHSIKTTANCLADSEWQMGQKVNHAKFGQGTVINVEG
SGDATRLQIAFAGNGIKWLIAKMANLVKL
>HD1940 xerC, integrase/recombinase XerC
MLNKQNKLYLQAQAYWDFLRIEKQVSPHTLTNYQRQLLAISEMLIAAQID
DWQAVDASVVRWILTQSHKQGLGAKSIGLRLVVLRQWFAYLVQRHYVKVN
PAVGIKAPKVARHLPKNIDAERMGQLLDVEVDEPADIRDLAMMELMYSSG
LRLAELQRLDLGDMDLIDAEVRLLGKGNKERIVPIGSRALTALQAWLTVR
PSFNPQDNALFLNKRGGRLSHRSIQLAMQKWGERQGLATRLHPHKLRHSF
ATHLLEASTDLRAVQELLGHSSLSTTQIYTHLDFQHLAKIYDASHPRARR
KRED
>HD0013 xerD, integrase/recombinase XerD
MKKLDPIIEQFLDTLWLEQSLSHNTLLSYRLDLELFSAWLVEPRAFLTLT
HTDLQLFLGDRLDKGYKSSSSARIISCLRKFFRFLCLEKYRLDDPTSMLI
SPRKRVQLPKSLSEEQVMDLLDAPNPLDPIELRDKAMLELLYATGLRVTE
LISLTIDNLNLRQGVVRVIGKGDKERLVPIGEEASYWIQEFFDYGRMILL
SDQQSDVLFPSRRAKQMTRQTFWHRIKYYAILAGIDAEKLSPHVLRHAFA
THLINHGADLRVVQMLLGHSDLSTTQIYTHVAKTRLKSIHKQFHPRG
>HD1323 xseB, exodeoxyribonuclease small subunit
MAKKPTQNFETTLQELESIVNHLEAGDLPLEQALTEFETAIKLVQQGQQR
LQQAEQRIQILLNKDEQAELADYE
>HD1718 xthA, exodeoxyribonuclease III
MKFISFNINGLRARPHQLEAIINKHQPDVIGLQEIKVADEDFPHQLVEHL
GYHVFYHGQKGHYGVALLTKKQPLTIRKGFPNDTADAQKRMIMAEINTDF
GILTVLNGYFPQGENRQHETKFPAKAKFYADLQHYLETALTAYNPIIIMG
DMNICSTDLDIGIGEANRKRWLREGKCSFLPEEREWLDRLYHYGLVDTFR
AMHPTTTDQFSWFDYRSKGFNDNRGLRIDLILASTTLANHCVETGIDLEI
RAMEKPSDHAPIWAVFK
>HD0785 yfgE, conserved probable chromosomal replication initiator protein
MQLLLPIHQIDDETLDSFYSENSLLLLDSLRQNFIDVQQPFFYIWGAKSC
GKSHLLKAVSNQYLLSQKTASYIPLTKSHYFSPLVLDNIEQMDVICLDDL
QAIANNEEWELAIFDLFNKIREQQSLFNQGHKTLLLISANCSPHQLKIKL
PDLKSRLTWGEVYQLYDLTDDQKIVILQRKAYQKGIELSEEVANFLLKRL
DRDLPVLLAELDKLDRASLQAKRKLTMPFVKEIIGL