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2024-05-21 03:59:38

Gene list

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COG category: Replication, recombination and repair
Organism: Haemophilus ducreyi 35000HP, 35000HP

Number of genes found: 112

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Haemophilus ducreyi 35000HP, 35000HP
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
NA HD0295 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS227282 354 + 0.39548
NA HD0570 putatuve TatD family deoxyribonucleaseSubName: Full=Putatuve TatD family deoxyribonuclease; chromosome CDS438648 753 + 0.38911
NA HD1532 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1267912 963 - 0.460021
NA HD1049 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS834976 744 + 0.372312
NA HD0432 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS340212 543 + 0.292818
NA HD1529 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1266101 1266 - 0.434439
NA HD0356 putative deoxyribonucleaseSubName: Full=Putative deoxyribonuclease; chromosome CDS276603 801 - 0.399501
NA HD0504 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS388412 390 + 0.435897
NA HD0935 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS744962 1446 - 0.459889
NA HD1287 probable ATP-dependent helicaseSubName: Full=Probable ATP-dependent helicase; chromosome CDS1049843 1920 + 0.399479
NA HD1296 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1057641 1341 + 0.41387
NA HD1795 conserved hypothetical proteinRecName: Full=Putative Holliday junction resolvase; EC=3.1.-.-; chromosome CDS1503175 417 + 0.386091
NA HD0291 possible transposaseSubName: Full=Possible transposase; chromosome CDS223368 468 - 0.423077
NA HD0985 converved hypothetical proteinRecName: Full=Ribosomal RNA small subunit methyltransferase D; EC=2.1.1.171; chromosome CDS780561 594 + 0.393939
NA HD1920 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1614444 891 - 0.3367
NA HD0650 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS514212 360 - 0.355556
NA HD0506 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS388850 279 + 0.340502
NA HD0945 conserved possible DNA repair proteinSubName: Full=Conserved possible DNA repair protein; chromosome CDS751351 474 - 0.400844
NA HD1530 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1267353 579 - 0.457686
NA HD1936 putative deoxyribonucleaseSubName: Full=Putative deoxyribonuclease; chromosome CDS1625962 789 + 0.416984
NA HD1616 possible transposaseSubName: Full=Possible transposase; chromosome CDS1334298 1065 + 0.432864
NA HD0897 integrase/recombinaseSubName: Full=Integrase/recombinase; chromosome CDS719286 855 - 0.320468
NA HD1413 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1158472 600 + 0.358333
NA HD0905 IstB homolog, C-terminal fragmentSubName: Full=IstB-like protein, C-terminal; chromosome CDS725682 327 + 0.382263
NA HD0802 conserved hypothetical proteinRecName: Full=UPF0102 protein HD_0802; chromosome CDS635818 381 - 0.404199
NA HD0413 conserved DNA topoisomerase I-related proteinSubName: Full=Conserved DNA topoisomerase I-related protein; chromosome CDS327703 537 + 0.363128
NA HD0841 ADP compounds hydrolase, MutT/nudix familySubName: Full=ADP compounds hydrolase, MutT/nudix family; chromosome CDS669718 546 - 0.371795
NA HD1695 possible transposaseSubName: Full=Possible transposase; chromosome CDS1412935 468 + 0.423077
InsA HD1971 insertion element IS1 1/2/3/5/6 protein InsARecName: Full=Insertion element IS1 protein InsA; chromosome CDS1645790 276 - 0.528986
InsB HD1970 insertion element IS1 1/5/6 protein InsBRecName: Full=Insertion element IS1 protein InsB; chromosome CDS1645368 504 - 0.545635
dam HD0420 DNA adenine methylaseSubName: Full=DNA adenine methylase; chromosome CDS333655 837 - 0.360812
deaD HD1590 cold-shock DEAD box protein-ARecName: Full=ATP-dependent RNA helicase DeaD; EC=3.6.4.13; AltName: Full=Cold-shock DEAD box protein A; chromosome CDS1311864 1821 + 0.403624
dnaA HD0851 chromosomal replication initiator proteinRecName: Full=Chromosomal replication initiator protein DnaA; chromosome CDS678427 1347 - 0.368968
dnaB1 HD0973 replicative DNA helicaseSubName: Full=Replicative DNA helicase; chromosome CDS766159 1377 - 0.433551
dnaB2 HD1372 replicative DNA helicaseSubName: Full=Replicative DNA helicase; chromosome CDS1120452 1437 + 0.388309
dnaE HD0551 DNA polymerase III alpha subunitSubName: Full=DNA polymerase III alpha subunit; chromosome CDS419178 3477 - 0.405522
dnaG HD0690 DNA primaseRecName: Full=DNA primase; EC=2.7.7.-; chromosome CDS544816 1740 + 0.421839
dnaN HD0850 DNA polymerase III beta chainRecName: Full=DNA polymerase III subunit beta; EC=2.7.7.7; chromosome CDS677306 1104 - 0.391304
dnaQ HD0223 DNA polymerase III epsilon chainSubName: Full=DNA polymerase III epsilon chain; chromosome CDS161456 771 - 0.394293
dnaX HD1819 DNA polymerase III subunits gamma and tauSubName: Full=DNA polymerase III subunits gamma and tau; chromosome CDS1524362 2064 + 0.380814
fis HD0449 DNA-binding proteinRecName: Full=DNA-binding protein Fis; chromosome CDS355260 297 + 0.377104
gcr HD0678 site-specific recombinaseSubName: Full=Site-specific recombinase; chromosome CDS535390 1971 + 0.390665
gyrA HD1748 DNA gyrase subunit ARecName: Full=DNA gyrase subunit A; EC=5.99.1.3; chromosome CDS1458547 2703 - 0.409545
gyrB HD1643 DNA gyrase subunit BRecName: Full=DNA gyrase subunit B; EC=5.99.1.3; chromosome CDS1362720 2433 - 0.382655
hepA HD1764 RNA polymerase associated proteinRecName: Full=RNA polymerase-associated protein RapA; EC=3.6.4.-; AltName: Full=ATP-dependent helicase HepA; chromosome CDS1473426 2922 - 0.393224
holA HD1130 DNA polymerase III delta subunitSubName: Full=DNA polymerase III delta subunit; chromosome CDS897099 1026 - 0.355751
holB HD1935 DNA polymerase III delta' subunitSubName: Full=DNA polymerase III delta subunit; chromosome CDS1624937 987 + 0.381966
holC HD0667 DNA polymerase III chi subunitSubName: Full=DNA polymerase III chi subunit; chromosome CDS527767 462 + 0.409091
holD HD0211 DNA polymerase III psi subunit proteinRecName: Full=DNA polymerase III subunit psi; chromosome CDS152892 405 + 0.382716
hupA HD1004 DNA-binding protein HUSubName: Full=DNA-binding protein HU; chromosome CDS797905 273 + 0.395604
ihfA HD1482 integration host factor, alpha chainRecName: Full=Integration host factor subunit alpha; Short=IHF-alpha; chromosome CDS1218059 297 - 0.390572
ihfB HD1353 integration host factor, beta subunitRecName: Full=Integration host factor subunit beta; Short=IHF-beta; chromosome CDS1107771 282 + 0.368794
kdkA HD1101 3-deoxy-D-mannooctulosonic acid kinaseRecName: Full=3-deoxy-D-manno-octulosonic acid kinase; Short=Kdo kinase; EC=2.7.1.166; chromosome CDS878056 729 - 0.374486
ligA HD0830 DNA ligaseRecName: Full=DNA ligase; EC=6.5.1.2; AltName: Full=Polydeoxyribonucleotide synthase [NAD(+)]; chromosome CDS659456 2061 - 0.414362
mfd HD0975 transcription repair coupling factorRecName: Full=Transcription-repair-coupling factor; Short=TRCF; EC=3.6.4.-; chromosome CDS768923 3483 - 0.38731
mutH HD0544 DNA mismatch repair proteinRecName: Full=DNA mismatch repair protein MutH; AltName: Full=Methyl-directed mismatch repair protein; chromosome CDS413865 681 - 0.403818
mutL HD0743 DNA mismatch repair protein MutLRecName: Full=DNA mismatch repair protein MutL; chromosome CDS583842 1797 - 0.423484
mutM HD0710 formamidopyrimidine-DNA glycosylaseRecName: Full=Formamidopyrimidine-DNA glycosylase; Short=Fapy-DNA glycosylase; EC=3.2.2.23; AltName: Full=DNA-(apurinic or apyrimidinic site) lyase MutM; Short=AP lyase MutM; EC=4.2.99.18; chromosome CDS563452 825 + 0.403636
mutS HD2024 DNA mismatch repair protein MutSRecName: Full=DNA mismatch repair protein MutS; chromosome CDS1683966 2601 - 0.421376
mutT HD1786 mutator MutT proteinSubName: Full=Mutator MutT protein; chromosome CDS1496301 399 - 0.388471
mutY HD2004 A/G-specific adenine glycosylaseSubName: Full=A/G-specific adenine glycosylase; chromosome CDS1667582 1089 - 0.408632
nfo HD1062 endonuclease IVRecName: Full=Probable endonuclease 4; EC=3.1.21.2; AltName: Full=Endodeoxyribonuclease IV; AltName: Full=Endonuclease IV; chromosome CDS844116 846 + 0.387707
nth HD1115 endonuclease III, DNA (apurinic or apyrimidinic site) lyaseRecName: Full=Endonuclease III; EC=4.2.99.18; AltName: Full=DNA-(apurinic or apyrimidinic site) lyase; chromosome CDS888520 636 - 0.371069
ntpA HD0598 probable dATP pyrophosphohydrolaseSubName: Full=Probable dATP pyrophosphohydrolase; chromosome CDS458348 456 - 0.357456
nudH HD0172 (Di)nucleoside polyphosphate hydrolaseRecName: Full=RNA pyrophosphohydrolase; EC=3.6.1.-; AltName: Full=(Di)nucleoside polyphosphate hydrolase; chromosome CDS115108 594 + 0.410774
ogt HD1077 methylated-DNA--protein-cysteineS-methyltransferaseRecName: Full=Methylated-DNA--protein-cysteine methyltransferase; EC=2.1.1.63; AltName: Full=6-O-methylguanine-DNA methyltransferase; AltName: Full=O-6-methylguanine-DNA-alkyltransferase; chromosome CDS858836 558 - 0.403226
parC HD1587 topoisomerase IV subunit ARecName: Full=DNA topoisomerase 4 subunit A; EC=5.99.1.3; AltName: Full=Topoisomerase IV subunit A; chromosome CDS1305968 2247 - 0.384068
parE HD0870 DNA topoisomerase IV subunit BRecName: Full=DNA topoisomerase 4 subunit B; EC=5.99.1.3; AltName: Full=Topoisomerase IV subunit B; chromosome CDS694332 1917 - 0.400626
polA HD1236 DNA polymerase ISubName: Full=DNA polymerase I; chromosome CDS1001515 2889 + 0.386293
priA HD0623 primosomal protein N'SubName: Full=Primosomal protein N; chromosome CDS483603 2145 + 0.394406
priB HD1046 primosomal replication protein nRecName: Full=Primosomal replication protein n; chromosome CDS833673 375 + 0.336
radC HD0732 DNA repair proteinRecName: Full=UPF0758 protein HD_0732; chromosome CDS576722 672 - 0.386905
rdgC HD0392 recombination associated proteinSubName: Full=Recombination associated protein; chromosome CDS310898 903 + 0.366556
recA HD0410 RecA proteinRecName: Full=Protein RecA; AltName: Full=Recombinase A; chromosome CDS325753 1119 + 0.393208
recB HD1076 exodeoxyribonuclease V, beta subunitSubName: Full=Exodeoxyribonuclease V, beta subunit; chromosome CDS855164 3597 + 0.3603
recC HD0186 exodeoxyribonuclease V, gamma subunitSubName: Full=Exodeoxyribonuclease V, gamma subunit; chromosome CDS124536 3342 + 0.327648
recD HD0626 exodeoxyribonuclease V, alpha subunitSubName: Full=Exodeoxyribonuclease V, alpha subunit; chromosome CDS487021 1947 + 0.363636
recF HD0849 DNA replication and repair protein RecFRecName: Full=DNA replication and repair protein RecF; chromosome CDS676162 1083 - 0.372115
recG HD1921 ATP-dependent DNA helicase RecGSubName: Full=ATP-dependent DNA helicase RecG; chromosome CDS1615543 2094 + 0.423591
recJ HD1342 single-stranded-DNA-specific exonuclease RecJSubName: Full=Single-stranded-DNA-specific exonuclease RecJ; chromosome CDS1098531 1722 + 0.391405
recN HD0815 DNA repair proteinRecName: Full=DNA repair protein RecN; AltName: Full=Recombination protein N; chromosome CDS646402 1680 - 0.369643
recO HD1604 DNA repair protein RecORecName: Full=DNA repair protein RecO; AltName: Full=Recombination protein O; chromosome CDS1325435 723 - 0.387275
recQ HD0475 ATP-dependent DNA helicaseSubName: Full=ATP-dependent DNA helicase; chromosome CDS373282 1806 + 0.37763
recR HD0325 recombination DNA repair proteinRecName: Full=Recombination protein RecR; chromosome CDS258535 606 - 0.40099
rep HD0571 ATP-dependent DNA helicaseSubName: Full=ATP-dependent DNA helicase; chromosome CDS439517 2019 - 0.367509
rnhA HD1206 ribonuclease HRecName: Full=Ribonuclease HI; Short=RNase HI; EC=3.1.26.4; chromosome CDS981501 462 + 0.354978
rnhB HD1026 ribonuclease HIIRecName: Full=Ribonuclease HII; Short=RNase HII; EC=3.1.26.4; chromosome CDS816071 594 - 0.402357
rnt HD0611 ribonuclease TRecName: Full=Ribonuclease T; EC=3.1.13.-; AltName: Full=Exoribonuclease T; Short=RNase T; chromosome CDS470479 645 + 0.392248
ruvA HD1758 Holliday junction DNA helicase RuvARecName: Full=Holliday junction ATP-dependent DNA helicase RuvA; EC=3.6.4.12; chromosome CDS1469533 606 - 0.39604
ruvB HD1757 Holliday junction DNA helicase RuvBRecName: Full=Holliday junction ATP-dependent DNA helicase RuvB; EC=3.6.4.12; chromosome CDS1468473 1005 - 0.429851
ruvC HD0593 crossover junction endodeoxyribonucleaseRecName: Full=Crossover junction endodeoxyribonuclease RuvC; EC=3.1.22.4; AltName: Full=Holliday junction nuclease RuvC; AltName: Full=Holliday junction resolvase RuvC; chromosome CDS456253 579 - 0.404145
sbcB HD1412 exonuclease ISubName: Full=Exonuclease I; chromosome CDS1156909 1542 + 0.373541
seqA HD1270 DNA replication inhibitor proteinRecName: Full=Negative modulator of initiation of replication; chromosome CDS1030863 561 + 0.363636
smf HD1888 smf proteinSubName: Full=Smf protein; chromosome CDS1586846 1143 - 0.392826
srmB HD0213 ATP-dependent RNA helicase proteinRecName: Full=ATP-dependent RNA helicase SrmB; EC=3.6.4.13; chromosome CDS153787 1329 + 0.410083
ssb HD1285 single stranded DNA binding proteinRecName: Full=Single-stranded DNA-binding protein; Short=SSB; chromosome CDS1046317 531 - 0.423729
ssb2 HD0962 single-stranded DNA-binding proteinRecName: Full=Single-stranded DNA-binding protein; chromosome CDS760133 417 - 0.429257
tnpR HD0908 transposon gamma-delta resolvaseSubName: Full=Transposon gamma-delta resolvase; chromosome CDS727649 585 + 0.369231
topA HD1385 DNA topoisomerase IRecName: Full=DNA topoisomerase 1; EC=5.99.1.2; AltName: Full=DNA topoisomerase I; chromosome CDS1132309 2604 + 0.390553
topB1 HD0954 DNA topoisomerase IIIRecName: Full=DNA topoisomerase; EC=5.99.1.2; chromosome CDS755180 1512 - 0.433201
topB2 HD1276 DNA topoisomerase IIIRecName: Full=DNA topoisomerase 3; EC=5.99.1.2; AltName: Full=DNA topoisomerase III; chromosome CDS1038166 1920 + 0.394792
traC HD0917 probable DNA primaseSubName: Full=Probable DNA primase; chromosome CDS732982 945 - 0.392593
ung HD1066 uracil-DNA glycosylaseRecName: Full=Uracil-DNA glycosylase; Short=UDG; EC=3.2.2.27; chromosome CDS846314 672 + 0.418155
uvrA HD1286 excinuclease ABC subunit ARecName: Full=UvrABC system protein A; Short=UvrA protein; AltName: Full=Excinuclease ABC subunit A; chromosome CDS1046994 2829 + 0.417462
uvrB HD1416 excinuclease ABC subunit BRecName: Full=UvrABC system protein B; Short=Protein UvrB; AltName: Full=Excinuclease ABC subunit B; chromosome CDS1159958 2028 + 0.386095
uvrC HD1812 excinuclease ABC, subunit CRecName: Full=UvrABC system protein C; Short=Protein UvrC; AltName: Full=Excinuclease ABC subunit C; chromosome CDS1518134 1839 - 0.378467
uvrD HD1032 DNA helicase IISubName: Full=DNA helicase II; chromosome CDS821593 2190 + 0.4
xerC HD1940 integrase/recombinase XerCRecName: Full=Tyrosine recombinase XerC; chromosome CDS1628667 915 - 0.415301
xerD HD0013 integrase/recombinase XerDRecName: Full=Tyrosine recombinase XerD; chromosome CDS16486 894 + 0.370246
xseB HD1323 exodeoxyribonuclease small subunitRecName: Full=Exodeoxyribonuclease 7 small subunit; EC=3.1.11.6; AltName: Full=Exodeoxyribonuclease VII small subunit; Short=Exonuclease VII small subunit; chromosome CDS1078211 225 - 0.395556
xthA HD1718 exodeoxyribonuclease IIISubName: Full=Exodeoxyribonuclease III; chromosome CDS1432567 804 + 0.374378
yfgE HD0785 conserved probable chromosomal replication initiator proteinSubName: Full=Conserved probable chromosomal replication initiator protein; chromosome CDS622394 711 + 0.320675