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2024-05-17 09:30:46

Gene list

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COG category: Replication, recombination and repair
Organism: Prochlorococcus marinus subsp. marinus str. CCMP1375, CCMP1375; SS120

Number of genes found: 87

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Prochlorococcus marinus subsp. marinus str. CCMP1375, CCMP1375; SS120
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
NA Pro0065 Predicted N6-adenine-specific DNA methylaseSubName: Full=Predicted N6-adenine-specific DNA methylase; chromosome CDS75660 1149 + 0.332463
NA Pro1016 Uracil-DNA glycosylaseSubName: Full=Uracil-DNA glycosylase; chromosome CDS933636 609 - 0.348112
NA Pro1127 DNA helicase related to phage enzymeSubName: Full=DNA helicase related to phage enzyme; chromosome CDS1055744 1440 - 0.370139
NA Pro0722 Uncharacterized proteinSubName: Full=Uncharacterized protein; chromosome CDS657874 378 - 0.277778
NA Pro0245 Mismatch repair ATPase (MutS family)RecName: Full=Endonuclease MutS2; EC=3.1.-.-; chromosome CDS241674 2418 + 0.394955
NA Pro1056 Uncharacterized proteinSubName: Full=Uncharacterized protein; chromosome CDS974080 351 + 0.378917
NA Pro1601 Uncharacterized membrane proteinSubName: Full=Uncharacterized membrane protein; chromosome CDS1458214 1101 - 0.409628
NA Pro0113 Predicted proteinSubName: Full=Uncharacterized protein; chromosome CDS119846 330 - 0.309091
NA Pro0548 Uncharacterized proteinSubName: Full=Uncharacterized protein; chromosome CDS522339 774 + 0.447028
NA Pro1274 DNA helicaseSubName: Full=DNA helicase; chromosome CDS1174866 1935 + 0.320413
NA Pro1621 Superfamily II RNA helicaseSubName: Full=Superfamily II RNA helicase; chromosome CDS1474361 2778 - 0.396328
NA Pro0070 Uncharacterized conserved proteinSubName: Full=Uncharacterized conserved protein; chromosome CDS78441 381 + 0.404199
NA Pro1411 Uncharacterized proteinSubName: Full=Uncharacterized protein; chromosome CDS1310635 321 - 0.34891
NA Pro0629 DNA helicase, predicted restriction/modification system component, ortholog of BS_yeeBSubName: Full=DNA helicase; chromosome CDS589776 2064 - 0.362888
NA Pro1555 Uncharacterized conserved proteinSubName: Full=Uncharacterized conserved protein; chromosome CDS1419086 297 - 0.377104
NA Pro1141 N6-adenine-specific methylaseSubName: Full=N6-adenine-specific methylase; chromosome CDS1072868 603 + 0.331675
NA Pro0478 cyanobacteria-specific proteinSubName: Full=Cyanobacteria-specific protein; chromosome CDS456362 519 + 0.396917
NA Pro0612 Retron-type reverse transcriptaseSubName: Full=Retron-type reverse transcriptase; chromosome CDS571900 1419 - 0.360113
NA Pro0524 XisA-like site specific recombinase from phage integrase familySubName: Full=XisA-like site specific recombinase from phage integrase family; chromosome CDS500108 1161 - 0.352283
NA Pro0867 Predicted endonucleaseRecName: Full=Putative Holliday junction resolvase; EC=3.1.-.-; chromosome CDS790024 462 - 0.396104
NA Pro0317 NUDIX/MutT family pyrophosphohydrolaseSubName: Full=NUDIX/MutT family pyrophosphohydrolase; chromosome CDS308737 561 - 0.4082
NA Pro0883 Predicted proteinSubName: Full=Uncharacterized protein; chromosome CDS803155 282 - 0.287234
NA Pro0812 Predicted proteinSubName: Full=Uncharacterized protein; chromosome CDS735265 510 - 0.360784
NA Pro0279 Predicted endonucleaseSubName: Full=Predicted endonuclease; chromosome CDS273455 438 + 0.317352
NA Pro0887 Zn-ribbon proteinSubName: Full=Zn-ribbon protein; chromosome CDS806335 204 + 0.313726
NA Pro1276 Predicted proteinSubName: Full=Uncharacterized protein; chromosome CDS1177675 552 + 0.336957
NA Pro0848 Uncharacterized membrane proteinSubName: Full=Uncharacterized membrane protein; chromosome CDS775100 300 - 0.386667
NA Pro0344 Predicted proteinSubName: Full=Uncharacterized protein; chromosome CDS331924 189 - 0.380952
alkB Pro0802 Alkylated DNA repair proteinSubName: Full=Alkylated DNA repair protein; chromosome CDS726553 564 + 0.320922
cpeT Pro0342 CpeT homologRecName: Full=Chromophore lyase CpcT/CpeT; EC=4.-.-.-; chromosome CDS330805 588 - 0.294218
dinG Pro1718 Rad3-related DNA helicaseSubName: Full=Rad3-related DNA helicase; chromosome CDS1569396 1431 - 0.396925
dinP Pro0759 Nucleotidyltransferase/DNA polymeraseSubName: Full=Nucleotidyltransferase/DNA polymerase; chromosome CDS690057 1272 - 0.382075
dnaA Pro0567 ATPaseRecName: Full=Chromosomal replication initiator protein DnaA; chromosome CDS537957 1386 + 0.393939
dnaB Pro1835 Replicative DNA helicaseSubName: Full=Replicative DNA helicase; chromosome CDS1692385 1416 + 0.388418
dnaE Pro0751 DNA polymerase III alpha subunitSubName: Full=DNA polymerase III alpha subunit; chromosome CDS681024 3507 + 0.356145
dnaG Pro0757 DNA primaseRecName: Full=DNA primase; EC=2.7.7.-; chromosome CDS687410 2061 + 0.402232
dnaN Pro0001 DNA polymerase III beta subunitRecName: Full=DNA polymerase III subunit beta; EC=2.7.7.7; chromosome CDS174 1158 + 0.309154
dnaQ Pro0777 DNA polymerase III epsilon subunitSubName: Full=DNA polymerase III epsilon subunit; chromosome CDS703846 711 + 0.412096
dnaX Pro1818 DNA polymerase III gamma/tau subunitSubName: Full=DNA polymerase III gamma/tau subunit; chromosome CDS1675533 1680 + 0.335119
gyrA Pro1137 DNA gyrase A subunitRecName: Full=DNA gyrase subunit A; EC=5.99.1.3; chromosome CDS1067068 2628 - 0.378615
gyrA Pro0005 Type IIA topoisomerase, A subunit, ParCSubName: Full=Type IIA topoisomerase, A subunit, ParC; chromosome CDS5992 2487 - 0.315239
gyrB Pro1796 DNA gyrase B subunitRecName: Full=DNA gyrase subunit B; EC=5.99.1.3; chromosome CDS1647189 1977 - 0.368741
hepA Pro0047 Superfamily II DNA/RNA helicases, SNF2 familySubName: Full=Superfamily II DNA/RNA helicases, SNF2 family; chromosome CDS46600 3189 - 0.368768
himA Pro1401 Bacterial nucleoid DNA-binding proteinSubName: Full=Bacterial nucleoid DNA-binding protein; chromosome CDS1300942 276 - 0.438406
holA Pro1807 DNA polymerase III delta subunitSubName: Full=DNA polymerase III delta subunit; chromosome CDS1660814 1017 + 0.343166
holB Pro0151 ATPase involved in DNA replicationSubName: Full=ATPase involved in DNA replication; chromosome CDS151418 951 - 0.299685
lig Pro1841 NAD-dependent DNA ligaseRecName: Full=DNA ligase; EC=6.5.1.2; AltName: Full=Polydeoxyribonucleotide synthase [NAD(+)]; chromosome CDS1698178 2058 + 0.36103
mGS1 Pro0091 ATPaseSubName: Full=ATPase; chromosome CDS102410 1341 + 0.389262
mfd Pro1000 Transcription-repair coupling factorRecName: Full=Transcription-repair-coupling factor; Short=TRCF; EC=3.6.4.-; chromosome CDS916759 3513 + 0.325648
mpg Pro0263 3-methyladenine DNA glycosylaseRecName: Full=Putative 3-methyladenine DNA glycosylase; EC=3.2.2.-; chromosome CDS259376 663 - 0.371041
mutS Pro1805 Mismatch repair ATPaseRecName: Full=DNA mismatch repair protein MutS; chromosome CDS1657339 2745 + 0.351184
mutY Pro1789 A/G-specific DNA glycosylaseSubName: Full=A/G-specific DNA glycosylase; chromosome CDS1641463 1203 - 0.354115
nei Pro0370 Formamidopyrimidine-DNA glycosylaseRecName: Full=Formamidopyrimidine-DNA glycosylase; Short=Fapy-DNA glycosylase; EC=3.2.2.23; AltName: Full=DNA-(apurinic or apyrimidinic site) lyase MutM; Short=AP lyase MutM; EC=4.2.99.18; chromosome CDS358620 852 - 0.357981
nth Pro0880 Endonuclease IIIRecName: Full=Endonuclease III; EC=4.2.99.18; AltName: Full=DNA-(apurinic or apyrimidinic site) lyase; chromosome CDS800525 654 - 0.345566
polA Pro1234 DNA polymerase I 3'-5' exonuclease and polymerase domainsSubName: Full=DNA polymerase I 3-5 exonuclease and polymerase domains; chromosome CDS1136320 2958 + 0.375592
priA Pro0497 Primosomal protein N' (replication factor Y)-superfamily II helicaseSubName: Full=Primosomal protein N (Replication factor Y)-superfamily II helicase; chromosome CDS473544 2259 + 0.419212
psb28 Pro0771 Photosystem II reaction centre W proteinRecName: Full=Photosystem II reaction center Psb28 protein; AltName: Full=Photosystem II 13 kDa protein; AltName: Full=Photosystem II reaction center W protein; chromosome CDS699968 354 - 0.384181
recA Pro1716 RecA recombinaseRecName: Full=Protein RecA; AltName: Full=Recombinase A; chromosome CDS1567932 1140 + 0.421053
recB Pro1092 ATP-dependent exoDNAse beta subunitSubName: Full=ATP-dependent exoDNAse beta subunit; chromosome CDS1014658 3771 + 0.366216
recC Pro1090 Exonuclease V gamma subunitSubName: Full=Exonuclease V gamma subunit; chromosome CDS1010770 3312 + 0.356884
recD Pro1093 ATP-dependent exoDNAse alpha subunitSubName: Full=ATP-dependent exoDNAse alpha subunit; chromosome CDS1018431 1695 + 0.345723
recF Pro1728 Recombinational DNA repair ATPase (RecF pathway)RecName: Full=DNA replication and repair protein RecF; chromosome CDS1579064 1068 - 0.404494
recG Pro0828 RecG-like helicaseSubName: Full=RecG-like helicase; chromosome CDS750391 2526 + 0.35867
recJ Pro0984 Single-stranded DNA-specific exonucleaseSubName: Full=Single-stranded DNA-specific exonuclease; chromosome CDS901954 1881 + 0.320574
recN Pro1882 ATPaseRecName: Full=DNA repair protein RecN; AltName: Full=Recombination protein N; chromosome CDS1745611 1689 - 0.322084
recO Pro0395 Recombinational DNA repair protein RecORecName: Full=DNA repair protein RecO; AltName: Full=Recombination protein O; chromosome CDS379491 771 - 0.402075
recR Pro1098 Recombinational DNA repair proteinRecName: Full=Recombination protein RecR; chromosome CDS1024995 510 + 0.378431
rnhA Pro0226 Ribonuclease HIRecName: Full=Ribonuclease H; Short=RNase H; EC=3.1.26.4; chromosome CDS224331 498 - 0.385542
rnhB Pro1658 Ribonuclease HIIRecName: Full=Ribonuclease HII; Short=RNase HII; EC=3.1.26.4; chromosome CDS1520802 576 + 0.385417
ruvA Pro0754 Holliday junction resolvasome DNA-binding subunitRecName: Full=Holliday junction ATP-dependent DNA helicase RuvA; EC=3.6.4.12; chromosome CDS685286 669 - 0.339312
ruvB Pro1775 Holliday junction resolvasome helicase subunitRecName: Full=Holliday junction ATP-dependent DNA helicase RuvB; EC=3.6.4.12; chromosome CDS1629988 1071 - 0.394958
ruvC Pro1147 Holliday junction resolvasome endonuclease subunitRecName: Full=Crossover junction endodeoxyribonuclease RuvC; EC=3.1.22.4; AltName: Full=Holliday junction nuclease RuvC; AltName: Full=Holliday junction resolvase RuvC; chromosome CDS1077035 468 + 0.384615
sbcC Pro0702 ATPaseSubName: Full=ATPase; chromosome CDS642819 2715 - 0.353591
sbcD Pro0703 DNA repair exonucleaseSubName: Full=DNA repair exonuclease; chromosome CDS645540 1185 - 0.4
srmB Pro1094 Superfamily II DNA/RNA helicaseRecName: Full=ATP-dependent RNA helicase DeaD; EC=3.6.4.13; AltName: Full=Cold-shock DEAD box protein A; chromosome CDS1020284 1812 + 0.379139
ssb Pro1784 Single-stranded DNA-binding proteinRecName: Full=Single-stranded DNA-binding protein; chromosome CDS1637412 390 + 0.348718
ssb Pro0502 Single-stranded DNA-binding proteinSubName: Full=Single-stranded DNA-binding protein; chromosome CDS478656 459 - 0.418301
tatD Pro1641 Mg-dependent DNaseSubName: Full=Mg-dependent DNase; chromosome CDS1499696 789 - 0.395437
topA Pro0432 Topoisomerase IARecName: Full=DNA topoisomerase 1; EC=5.99.1.2; AltName: Full=DNA topoisomerase I; chromosome CDS414514 2619 + 0.39328
ubiC Pro1837 Predicted chorismate lyaseSubName: Full=Predicted chorismate lyase; chromosome CDS1695924 507 + 0.400394
uvrA Pro1881 Excinuclease ATPase subunitRecName: Full=UvrABC system protein A; Short=UvrA protein; AltName: Full=Excinuclease ABC subunit A; chromosome CDS1742609 2955 - 0.361083
uvrB Pro1809 Helicase subunit of the DNA excision repair complexRecName: Full=UvrABC system protein B; Short=Protein UvrB; AltName: Full=Excinuclease ABC subunit B; chromosome CDS1663657 2034 - 0.343166
uvrC Pro0954 Nuclease subunit of the excinuclease complexRecName: Full=UvrABC system protein C; Short=Protein UvrC; AltName: Full=Excinuclease ABC subunit C; chromosome CDS870346 1923 + 0.312533
uvrD Pro0335 Superfamily I DNA/RNA helicaseSubName: Full=Superfamily I DNA/RNA helicase; chromosome CDS323818 2424 - 0.370875
xseA Pro0111 Exonuclease VII, large subunitRecName: Full=Exodeoxyribonuclease 7 large subunit; EC=3.1.11.6; AltName: Full=Exodeoxyribonuclease VII large subunit; chromosome CDS118373 1155 + 0.369697
xseB Pro0112 Exodeoxyribonuclease VII small subunitRecName: Full=Exodeoxyribonuclease 7 small subunit; EC=3.1.11.6; AltName: Full=Exodeoxyribonuclease VII small subunit; chromosome CDS119561 285 + 0.252632
xthA Pro0483 Exonuclease IIISubName: Full=Exonuclease III; chromosome CDS460386 831 - 0.371841