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2024-05-18 20:11:29

Gene list

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COG category: Replication, recombination and repair
Organism: Shigella flexneri

Number of genes found: 121

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Shigella flexneri
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
S0001 IS2 orf2, fragmentSubName: Full=IS2 orf2; virulence plasmid pWR501 CDS191 303 - 0.49505
S0002 putative resolvase, fragmentSubName: Full=Putative resolvase; virulence plasmid pWR501 CDS485 465 + 0.509677
S0009 IS3 orfB, fragmentSubName: Full=IS3 orfB; virulence plasmid pWR501 CDS5742 423 - 0.536643
S0010 ISEc8 orfSubName: Full=IS600 orfA; SubName: Full=IS600-like, orfA; SubName: Full=ISEc8 orf; virulence plasmid pWR501 CDS6200 303 - 0.458746
S0014 orf, hypotheticalSubName: Full=Orf, hypothetical; virulence plasmid pWR501 CDS10177 375 - 0.528
S0015 orf, hypotheticalSubName: Full=Orf, hypothetical; virulence plasmid pWR501 CDS10377 378 - 0.537037
S0017 IS3 orf2, fragmentSubName: Full=IS3 orf2; virulence plasmid pWR501 CDS11888 120 - 0.441667
S0018 IS21 orf, fragmentSubName: Full=IS21 orf; virulence plasmid pWR501 CDS12158 228 - 0.438596
S0021 putative transposaseSubName: Full=Putative transposase; virulence plasmid pWR501 CDS13334 285 + 0.533333
S0022 IS4 orfSubName: Full=IS4 orf; virulence plasmid pWR501 CDS13629 1347 - 0.539718
S0023 putative IS orf, fragmentSubName: Full=Putative IS orf; virulence plasmid pWR501 CDS15084 336 + 0.547619
S0028 putative transposase, fragmentSubName: Full=Putative transposase; virulence plasmid pWR501 CDS17861 207 + 0.444444
S0033 IS3 putative transposase, fragmentSubName: Full=IS3 putative transposase; virulence plasmid pWR501 CDS21502 585 + 0.528205
S0035 IS100 orfA, fragmentSubName: Full=IS100 orfA; virulence plasmid pWR501 CDS24774 432 + 0.525463
S0036 IS100 orfB, fragmentSubName: Full=IS100 orf; SubName: Full=IS100 orfB; virulence plasmid pWR501 CDS25321 663 + 0.496229
S0037 IS1 InsBSubName: Full=IS1 InsB; virulence plasmid pWR501 CDS25999 390 + 0.520513
S0041 putative transposase, fragmentSubName: Full=Putative transposase; virulence plasmid pWR501 CDS29145 366 + 0.464481
S0042 putative reverse transcriptaseSubName: Full=Putative reverse transcriptase; virulence plasmid pWR501 CDS29915 1218 - 0.481938
S0046 IS3 orfB, fragmentSubName: Full=IS3 orfB; virulence plasmid pWR501 CDS33050 408 - 0.490196
S0048 IS150 orfB, fragmentSubName: Full=IS150 orfB; virulence plasmid pWR501 CDS35074 246 - 0.443089
S0049 IS150 orfASubName: Full=IS150 orfA; virulence plasmid pWR501 CDS35316 522 - 0.45977
S0050 IS100 orfA, fragmentSubName: Full=IS100 orfA; virulence plasmid pWR501 CDS35875 384 + 0.450521
S0052 IS2 orf2, fragmentSubName: Full=IS2 orf2; virulence plasmid pWR501 CDS37531 288 + 0.5
S0055 IS110 orfSubName: Full=IS110 orf; virulence plasmid pWR501 CDS39414 1197 - 0.578112
S0073 putative IS orf, fragmentSubName: Full=Putative IS orf; virulence plasmid pWR501 CDS51722 393 + 0.531807
S0078 IS1650 orfASubName: Full=IS1650 orfA; virulence plasmid pWR501 CDS58473 330 + 0.506061
S0079 IS1650 orfB, fragmentSubName: Full=IS1650 orfB; virulence plasmid pWR501 CDS58682 516 + 0.523256
S0080 IS630 orfSubName: Full=IS630 orf; virulence plasmid pWR501 CDS59312 1032 + 0.531008
S0082 iso-IS1-insASubName: Full=Iso-IS1-insA; virulence plasmid pWR501 CDS60525 285 + 0.484211
S0083 iso-IS1-insB, fragmentSubName: Full=Iso-IS1-insB; virulence plasmid pWR501 CDS60935 183 + 0.546448
S0089 orf, hypotheticalSubName: Full=Orf, hypothetical; virulence plasmid pWR501 CDS67364 234 - 0.495726
S0090 orf, hypotheticalSubName: Full=Orf, hypothetical; virulence plasmid pWR501 CDS67638 504 - 0.541667
S0094 IS100 orfSubName: Full=IS100 orf; SubName: Full=IS100 orfB; virulence plasmid pWR501 CDS69698 663 + 0.496229
S0099 orf, hypotheticalSubName: Full=Orf, hypothetical; virulence plasmid pWR501 CDS76494 300 - 0.53
S0101 IS1650 orfBSubName: Full=IS1650 orfB; virulence plasmid pWR501 CDS77379 516 - 0.525194
S0102 IS1650 orfASubName: Full=IS1650 orfA; virulence plasmid pWR501 CDS77774 540 - 0.507407
S0108 IS600 orfBSubName: Full=IS600 orfB; virulence plasmid pWR501 CDS81597 819 - 0.510379
S0109 IS600 orfASubName: Full=IS600 orfA; SubName: Full=IS600-like; virulence plasmid pWR501 CDS82451 303 - 0.462046
S0117 putative IS orfSubName: Full=Putative IS orf; virulence plasmid pWR501 CDS86376 573 - 0.507853
S0118 putative IS orfSubName: Full=Putative IS orf; virulence plasmid pWR501 CDS86945 351 - 0.547009
S0125 IS1353 orfSubName: Full=IS1353 orf; virulence plasmid pWR501 CDS91521 243 + 0.497942
S0126 IS1353 orfSubName: Full=IS1353 orf; virulence plasmid pWR501 CDS91818 282 + 0.521277
S0128 putative transposase for IS110SubName: Full=Putative transposase for IS110; virulence plasmid pWR501 CDS93347 1197 - 0.579783
S0129 IS100 orfASubName: Full=IS100 orfA; virulence plasmid pWR501 CDS94735 1005 - 0.526368
S0168 IS600-like, orfBSubName: Full=IS600-like, orfB; virulence plasmid pWR501 CDS129282 750 - 0.521333
S0169 IS600-like, orfBSubName: Full=IS600-like, orfB; virulence plasmid pWR501 CDS130043 819 - 0.512821
S0170 IS600-likeSubName: Full=IS600 orfA; SubName: Full=IS600-like; virulence plasmid pWR501 CDS130897 303 - 0.462046
S0171 IS600-like, orfASubName: Full=IS600 orfA; SubName: Full=IS600-like, orfA; SubName: Full=ISEc8 orf; virulence plasmid pWR501 CDS131310 303 - 0.458746
S0172 IS600-like, orfB, fragmentSubName: Full=IS600-like, orfB; virulence plasmid pWR501 CDS131698 189 + 0.455026
S0174 IS3 orf, fragmentSubName: Full=IS3 orf; virulence plasmid pWR501 CDS133589 366 - 0.565574
S0183 putative transposase, fragmentSubName: Full=Putative transposase; virulence plasmid pWR501 CDS138720 231 - 0.463203
S0186 putative reverse transcriptase, fragmentSubName: Full=Putative reverse transcriptase; virulence plasmid pWR501 CDS140636 240 - 0.520833
S0187 putative reverse transcriptase, fragmentSubName: Full=Putative reverse transcriptase; virulence plasmid pWR501 CDS140907 201 - 0.557214
S0188 IS3 putative transposase, fragmentSubName: Full=IS3 putative transposase; virulence plasmid pWR501 CDS141022 243 - 0.559671
S0200 putative reverse transcriptase, fragmentSubName: Full=Putative reverse transcriptase; virulence plasmid pWR501 CDS152066 804 - 0.549751
S0201 putative reverse transcriptase, fragmentSubName: Full=Putative reverse transcriptase; virulence plasmid pWR501 CDS152882 201 - 0.532338
S0203 IS1650 orfBSubName: Full=IS1650 orfB; virulence plasmid pWR501 CDS154397 516 - 0.517442
S0204 IS1650 orfASubName: Full=IS1650 orfA; virulence plasmid pWR501 CDS154792 450 - 0.528889
S0205 orf, hypotheticalSubName: Full=Orf, hypothetical; virulence plasmid pWR501 CDS155287 402 - 0.41791
S0215 IS1328 transposase, fragmentSubName: Full=IS1328 transposase; virulence plasmid pWR501 CDS161422 654 - 0.493884
S0217 putative IS orfSubName: Full=Putative IS orf; virulence plasmid pWR501 CDS163173 573 - 0.507853
S0218 putative IS orfSubName: Full=Putative IS orf; virulence plasmid pWR501 CDS163742 351 - 0.547009
S0219 putative IS orfSubName: Full=Putative IS orf; virulence plasmid pWR501 CDS164089 675 - 0.502222
S0230 putative IS orf, fragmentSubName: Full=Putative IS orf; virulence plasmid pWR501 CDS169609 570 + 0.577193
S0231 putative IS orf, fragmentSubName: Full=Putative IS orf; virulence plasmid pWR501 CDS170197 381 + 0.580052
S0243 IS4 orfSubName: Full=IS4 orf; virulence plasmid pWR501 CDS176449 1320 + 0.537121
S0248 IS3 transposase, fragmentSubName: Full=IS3 transposase; virulence plasmid pWR501 CDS179456 219 + 0.579909
S0249 orf, hypotheticalSubName: Full=Orf, hypothetical; virulence plasmid pWR501 CDS179662 2913 - 0.509097
S0254 IS630 orfASubName: Full=IS630 orfA; virulence plasmid pWR501 CDS187108 957 - 0.535005
S0255 IS600 orfBSubName: Full=IS600 orfB; virulence plasmid pWR501 CDS188076 819 - 0.5116
S0256 IS600 orfASubName: Full=IS600 orfA; virulence plasmid pWR501 CDS188930 303 - 0.462046
S0266 IS600 orfBSubName: Full=IS600 orfB; virulence plasmid pWR501 CDS197674 819 - 0.5116
S0267 IS600 orfA, fragmentSubName: Full=IS600 orfA; virulence plasmid pWR501 CDS198528 126 - 0.420635
S0276 conserved plasmid hypothetical protein virulence plasmid pWR501 CDS207312 168 + 0.511905
S0285 IS600 orfASubName: Full=IS600 orfA; SubName: Full=IS600-like, orfA; SubName: Full=ISEc8 orf; virulence plasmid pWR501 CDS216081 303 + 0.458746
S0286 IS600 orfB, fragmentSubName: Full=IS600 orfB; virulence plasmid pWR501 CDS216419 189 + 0.529101
S0288 IS911 orfASubName: Full=IS911 orfA; virulence plasmid pWR501 CDS217023 339 + 0.439528
S0289 IS911 orfBSubName: Full=IS911 orfB; virulence plasmid pWR501 CDS217388 840 + 0.546429
insA IS1 orfBSubName: Full=IS1 orfB; virulence plasmid pWR501 CDS169292 276 - 0.528986
insA iso-IS1 orfASubName: Full=Iso-IS1 orfA; virulence plasmid pWR501 CDS175762 276 - 0.528986
insB IS1 orfBSubName: Full=IS1 orfB; virulence plasmid pWR501 CDS168870 504 - 0.529762
insB iso-IS1 orfBSubName: Full=Iso-IS1 orfB; virulence plasmid pWR501 CDS175340 504 - 0.527778
insB IS1 transposaseSubName: Full=IS1 transposase; virulence plasmid pWR501 CDS38650 504 + 0.529762
ipaB invasion proteinRecName: Full=Invasin IpaB; AltName: Full=62 kDa antigen; virulence plasmid pWR501 CDS104273 1743 - 0.379805
spa32 invasion proteinRecName: Full=Surface presentation of antigens protein SpaN; AltName: Full=Spa32 protein; virulence plasmid pWR501 CDS123962 879 + 0.315131
tnpC IS629 orfSubName: Full=IS629 orf; virulence plasmid pWR501 CDS148540 648 + 0.54321
tnpC IS629 orfSubName: Full=IS629 orf; virulence plasmid pWR501 CDS138070 648 + 0.54784
tnpC IS629 orfSubName: Full=IS629 orf; virulence plasmid pWR501 CDS50368 648 + 0.546296
tnpC IS629 orfSubName: Full=IS629 orf; virulence plasmid pWR501 CDS68114 792 - 0.556818
tnpC IS629 orfSubName: Full=IS629 orf; virulence plasmid pWR501 CDS31835 669 - 0.542601
tnpC IS629 orfSubName: Full=IS629 orf; virulence plasmid pWR501 CDS43125 669 + 0.544096
tnpC IS629 orfSubName: Full=IS629 orf; virulence plasmid pWR501 CDS178315 669 + 0.544096
tnpC IS629 orf, fragmentSubName: Full=IS629 orf; virulence plasmid pWR501 CDS216647 366 - 0.521858
tnpC IS629 orf, fragmentSubName: Full=IS629 orf; virulence plasmid pWR501 CDS141237 564 - 0.562057
tnpD IS629 orfSubName: Full=IS629 orf; virulence plasmid pWR501 CDS137834 354 + 0.550847
tnpD IS629 orfSubName: Full=IS629 orf; virulence plasmid pWR501 CDS178100 354 + 0.550847
tnpE IS629 orfASubName: Full=IS629 orf; SubName: Full=IS629 orfA; virulence plasmid pWR501 CDS65652 327 + 0.535168
tnpE IS629 orfSubName: Full=IS629 orf; SubName: Full=IS629 orfA; virulence plasmid pWR501 CDS177774 327 + 0.535168
tnpE IS629 orfSubName: Full=IS629 orf; SubName: Full=IS629 orfA; virulence plasmid pWR501 CDS137508 327 + 0.535168
tnpE IS629 orfSubName: Full=IS629 orf; SubName: Full=IS629 orfA; virulence plasmid pWR501 CDS42689 327 + 0.535168
tnpE IS629 orfSubName: Full=IS629 orf; virulence plasmid pWR501 CDS69120 327 - 0.541284
tnpE IS629 orfSubName: Full=IS629 orf; virulence plasmid pWR501 CDS147978 327 + 0.544343
tnpE IS629 orfSubName: Full=IS629 orf; virulence plasmid pWR501 CDS32718 327 - 0.541284
tnpE IS629 orfSubName: Full=IS629 orf; virulence plasmid pWR501 CDS49911 327 + 0.544343
tnpF IS2 orf2SubName: Full=IS2 orf2; virulence plasmid pWR501 CDS165520 456 - 0.495614
tnpF IS2 orf2SubName: Full=IS2 orf2; virulence plasmid pWR501 CDS80254 906 - 0.551876
tnpF IS2 orf2SubName: Full=IS2 orf2; virulence plasmid pWR501 CDS165950 906 - 0.549669
tnpG IS2 orf1SubName: Full=IS2 orf1; SubName: Full=IS2, orf1; virulence plasmid pWR501 CDS166813 411 - 0.506083
tnpG IS2 orf1SubName: Full=IS2 orf1; virulence plasmid pWR501 CDS164711 852 - 0.552817
tnpG IS2 orf1, fragmentSubName: Full=IS2 orf1; virulence plasmid pWR501 CDS167327 219 - 0.420091
tnpG IS2, orf1SubName: Full=IS2 orf1; SubName: Full=IS2, orf1; virulence plasmid pWR501 CDS81117 411 - 0.508516
tnpI IS600 orfBSubName: Full=IS600 orfB; virulence plasmid pWR501 CDS90686 711 + 0.513361
tnpI IS600 orfB, fragmentSubName: Full=IS600 orfB; virulence plasmid pWR501 CDS43833 189 - 0.529101
tnpJ IS600 orfASubName: Full=IS600 orfA; SubName: Full=IS600-like, orfA; SubName: Full=ISEc8 orf; virulence plasmid pWR501 CDS44057 303 - 0.458746
tnpJ IS600 orfASubName: Full=IS600 orfA; virulence plasmid pWR501 CDS90332 303 + 0.462046
tnpR Tn501 transposition resolvaseSubName: Full=Tn501 transposition resolvase; virulence plasmid pWR501 CDS203504 561 + 0.655971
traI oriT nicking and unwinding protein, fragmentSubName: Full=OriT nicking and unwinding protein; virulence plasmid pWR501 CDS190564 4872 + 0.598933
traI oriT nicking and unwinding protein, fragmentSubName: Full=OriT nicking and unwinding protein; virulence plasmid pWR501 CDS190151 393 + 0.562341
ycdA orf, hypotheticalSubName: Full=Orf, hypothetical; virulence plasmid pWR501 CDS158917 684 + 0.559942
yigB orf, hypothetical, fragmentSubName: Full=Orf, hypothetical; virulence plasmid pWR501 CDS197451 195 + 0.482051
yihA conserved plasmid hypothetical proteinSubName: Full=Uncharacterized protein; virulence plasmid pWR501 CDS207773 591 + 0.494078