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2024-05-17 06:52:26

Gene list

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COG category: Replication, recombination and repair
Organism: Buchnera aphidicola str. Bp (Baizongia pistaciae), Bp (Baizongia pistaciae)

Number of genes found: 37

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Buchnera aphidicola str. Bp (Baizongia pistaciae), Bp (Baizongia pistaciae)
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
deaD bbp335 ATP-dependent RNA helicaseRecName: Full=ATP-dependent RNA helicase DeaD; EC=3.6.4.13; AltName: Full=Cold-shock DEAD box protein A; chromosome CDS390346 1809 - 0.305694
dnaA bbp012 chromosomal replication initiator protein DnaARecName: Full=Chromosomal replication initiator protein DnaA; chromosome CDS13114 1374 - 0.229985
dnaB bbp489 replicative DNA helicaseRecName: Full=Replicative DNA helicase; EC=3.6.4.12; chromosome CDS550628 1392 + 0.289512
dnaC bbp024 putative DNA replication proteinRecName: Full=DNA replication protein DnaC; chromosome CDS23630 741 - 0.303644
dnaE bbp220 DNA polymerase III alpha subunitRecName: Full=DNA polymerase III subunit alpha; EC=2.7.7.7; chromosome CDS255887 3234 + 0.25572
dnaG bbp053 DNA primaseRecName: Full=DNA primase; EC=2.7.7.-; chromosome CDS60380 1737 - 0.238918
dnaN bbp011 putative DNA polymerase III beta chainRecName: Full=DNA polymerase III subunit beta; EC=2.7.7.7; chromosome CDS11994 1116 - 0.25
dnaQ bbp230 putative DNA polymerase III epsilon chainRecName: Full=DNA polymerase III subunit epsilon; EC=2.7.7.7; chromosome CDS270064 738 + 0.242547
dnaX bbp425 DNA polymerase III subunit gammaRecName: Full=DNA polymerase III subunit gamma; EC=2.7.7.7; chromosome CDS499709 1113 + 0.261456
endA bbp369 endonuclease IRecName: Full=Endonuclease-1; EC=3.1.21.1; AltName: Full=Endonuclease I; Short=Endo I; chromosome CDS426182 738 + 0.247967
gyrA bbp169 DNA gyrase subunit ARecName: Full=DNA gyrase subunit A; EC=5.99.1.3; chromosome CDS192634 2544 - 0.283019
gyrB bbp010 putative DNA gyrase subunit bRecName: Full=DNA gyrase subunit B; EC=5.99.1.3; chromosome CDS9397 2415 - 0.269151
holA bbp396 DNA polymerase III delta subunitRecName: Full=DNA polymerase III subunit delta; EC=2.7.7.7; chromosome CDS459348 999 + 0.193193
holB bbp324 DNA polymerase III delta' subunitRecName: Full=DNA polymerase III subunit delta; EC=2.7.7.7; chromosome CDS374650 1011 + 0.225519
hupA bbp033 DNA-binding protein HURecName: Full=DNA-binding protein HU; chromosome CDS37493 279 - 0.265233
lig bbp062 DNA ligaseRecName: Full=DNA ligase; EC=6.5.1.2; AltName: Full=Polydeoxyribonucleotide synthase [NAD(+)]; chromosome CDS71142 2019 + 0.243685
mfd bbp275 transcription-repair coupling factorRecName: Full=Transcription-repair-coupling factor; Short=TRCF; EC=3.6.4.-; chromosome CDS316434 2094 - 0.25979
mutH bbp018 MutHRecName: Full=DNA mismatch repair protein MutH; AltName: Full=Methyl-directed mismatch repair protein; chromosome CDS18848 663 + 0.263952
mutL bbp515 DNA mismatch repair protein MutLRecName: Full=DNA mismatch repair protein MutL; chromosome CDS575584 1794 - 0.240245
mutS bbp380 DNA mismatch repair protein MutSRecName: Full=DNA mismatch repair protein MutS; chromosome CDS437485 2403 - 0.257595
mutY bbp500 A/G-specific adenine glycosylaseRecName: Full=A/G-specific adenine glycosylase; EC=3.2.2.-; chromosome CDS562662 1056 + 0.232008
nfo bbp128 putative endonuclease IVRecName: Full=Probable endonuclease 4; EC=3.1.21.2; AltName: Full=Endodeoxyribonuclease IV; AltName: Full=Endonuclease IV; chromosome CDS141478 837 + 0.274791
nth bbp114 endonuclease IIIRecName: Full=Endonuclease III; EC=4.2.99.18; AltName: Full=DNA-(apurinic or apyrimidinic site) lyase; chromosome CDS124654 648 + 0.259259
phrB bbp278 deoxyribodipyrimidine photolyaseRecName: Full=Deoxyribodipyrimidine photo-lyase; EC=4.1.99.3; AltName: Full=DNA photolyase; AltName: Full=Photoreactivating enzyme; chromosome CDS322294 1437 + 0.255393
polA bbp382 putative 5'-3' exonucleaseRecName: Full=5-3 exonuclease; EC=3.1.11.-; chromosome CDS440900 909 + 0.240924
recB bbp404 exodeoxyribonuclease V beta chainRecName: Full=RecBCD enzyme subunit RecB; EC=3.1.11.5; AltName: Full=Exonuclease V subunit RecB; Short=ExoV subunit RecB; AltName: Full=Helicase/nuclease RecBCD subunit RecB; chromosome CDS470604 3543 + 0.218177
recC bbp403 exodeoxyribonuclease V gamma chainRecName: Full=RecBCD enzyme subunit RecC; EC=3.1.11.5; AltName: Full=Exonuclease V subunit RecC; Short=ExoV subunit RecC; AltName: Full=Helicase/nuclease RecBCD subunit RecC; chromosome CDS467229 3336 + 0.207134
recD bbp405 exodeoxyribonuclease V alpha chainRecName: Full=RecBCD enzyme subunit RecD; EC=3.1.11.5; AltName: Full=Exonuclease V subunit RecD; Short=ExoV subunit RecD; AltName: Full=Helicase/nuclease RecBCD subunit RecD; chromosome CDS474168 1857 + 0.218094
rep bbp540 ATP-dependent DNA helicase RepRecName: Full=ATP-dependent DNA helicase Rep; EC=3.6.4.12; chromosome CDS603522 2013 - 0.240934
rnhA bbp229 ribonuclease HIRecName: Full=Ribonuclease H; Short=RNase H; EC=3.1.26.4; chromosome CDS269553 462 - 0.28355
rnt bbp177 ribonuclease TRecName: Full=Ribonuclease T; EC=3.1.13.-; AltName: Full=Exoribonuclease T; Short=RNase T; chromosome CDS200826 654 - 0.299694
sbcB bbp503 exodeoxyribonuclease IRecName: Full=Exodeoxyribonuclease I; Short=Exonuclease I; EC=3.1.11.1; AltName: Full=DNA deoxyribophosphodiesterase; Short=dRPase; chromosome CDS564892 1446 - 0.238589
ssb bbp488 single-strand binding proteinRecName: Full=Single-stranded DNA-binding protein; Short=SSB; chromosome CDS549120 501 - 0.309381
ung bbp172 uracil-DNA glycosylaseRecName: Full=Uracil-DNA glycosylase; Short=UDG; EC=3.2.2.27; chromosome CDS197551 675 + 0.278519
ycfH bbp325 putative deoxyribonucleaseRecName: Full=Uncharacterized deoxyribonuclease bbp_325; EC=3.1.21.-; chromosome CDS375693 798 + 0.254386
yhhF bbp025 putative methylaseRecName: Full=Ribosomal RNA small subunit methyltransferase D; EC=2.1.1.171; AltName: Full=16S rRNA m2G966 methyltransferase; AltName: Full=rRNA (guanine-N(2)-)-methyltransferase; chromosome CDS24595 591 - 0.241963
yqgF bbp492 hypothetical 16.0 kDa proteinRecName: Full=Putative Holliday junction resolvase; EC=3.1.-.-; chromosome CDS554045 414 + 0.251208