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2024-05-06 02:01:05

Gene list

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COG category: Replication, recombination and repair
Organism: Chromobacterium violaceum ATCC 12472, ATCC 12472

Number of genes found: 148

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Chromobacterium violaceum ATCC 12472, ATCC 12472
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA CV4202 conserved hypothetical proteinchromosome CDS4534180 555 - 0.672072
NA CV0957 probable TIS1421-transposase orfB proteinchromosome CDS991777 567 - 0.573192
NA CV2156 conserved hypothetical proteinchromosome CDS2332955 1788 + 0.654362
NA CV2805 conserved hypothetical proteinchromosome CDS3058795 159 + 0.622642
NA CV2581 hypothetical proteinchromosome CDS2784433 366 - 0.52459
NA CV3831 probable DNA transport competence proteinchromosome CDS4129165 318 - 0.63522
NA CV4072 conserved hypothetical proteinchromosome CDS4404957 882 - 0.68254
NA CV0065 probable SWI/SNF family helicasechromosome CDS72287 2733 - 0.716795
NA CV1112 probable (di)nucleoside polyphosphate hydrolasechromosome CDS1163983 525 + 0.641905
NA CV4390 conserved hypothetical proteinchromosome CDS4735022 249 + 0.742972
NA CV1230 conserved hypothetical proteinchromosome CDS1292860 291 + 0.591065
NA CV2089 probable ATP-dependent RNA helicasechromosome CDS2275515 1689 + 0.67614
NA CV3857 conserved hypothetical proteinchromosome CDS4161249 1731 + 0.696707
NA CV4017 conserved hypothetical proteinchromosome CDS4343550 285 + 0.585965
NA CV1399 conserved hypothetical proteinchromosome CDS1474238 597 - 0.648241
NA CV1923 probable transposasechromosome CDS2093021 1044 - 0.583333
NA CV2946 probable DNA polymerase IIIchromosome CDS3225472 609 + 0.699507
NA CV0005 probable DNA methyltransferasechromosome CDS7173 897 + 0.573021
NA CV1939 hypothetical proteinchromosome CDS2110866 453 - 0.600442
NA CV2274 conserved hypothetical proteinchromosome CDS2462175 1113 - 0.610961
NA CV1586 probable MutT/nudix family proteinchromosome CDS1709998 612 + 0.70098
NA CV0364 hypothetical proteinchromosome CDS381095 192 + 0.677083
NA CV2316 probable transposase proteinchromosome CDS2508189 792 + 0.590909
NA CV2292 hypothetical proteinchromosome CDS2480006 1266 - 0.660348
NA CV0645 conserved hypothetical proteinchromosome CDS676267 282 - 0.641844
NA CV2550 probable mitomycin resistance proteinchromosome CDS2743184 291 - 0.680412
NA CV1228 conserved hypothetical proteinchromosome CDS1291179 627 + 0.673046
NA CV0088 probable methylated-DNA-[protein]-cysteine S-methyltransferasechromosome CDS99993 318 + 0.72327
NA CV1928 hypothetical proteinchromosome CDS2097656 471 - 0.645435
NA CV1229 conserved hypothetical proteinchromosome CDS1291807 1041 + 0.636888
NA CV3401 probable MutT-like proteinchromosome CDS3695511 468 + 0.662393
NA CV0004 probable transposasechromosome CDS5504 1044 - 0.583333
NA CV0220 probable methylated-DNA-[protein]-cysteine S-methyltransferasechromosome CDS230383 876 - 0.736301
NA CV3076 hypothetical proteinchromosome CDS3353192 447 - 0.66443
NA CV3705 probable oxidoreductasechromosome CDS4006140 1194 + 0.707705
NA CV3614 conserved hypothetical proteinchromosome CDS3919108 675 - 0.668148
NA CV0654 conserved hypothetical proteinchromosome CDS684228 339 + 0.684366
NA CV1405 conserved hypothetical proteinchromosome CDS1479951 516 - 0.674419
NA CV2593 hypothetical proteinchromosome CDS2793608 8835 - 0.46146
NA CV1020 probable DNA-directed DNA polymerase III (epsilon subunit)chromosome CDS1062256 1446 + 0.69917
NA CV2488 probable site-specific recombinasechromosome CDS2677194 1995 + 0.673183
NA CV1756 conserved hypothetical proteinchromosome CDS1910267 978 - 0.644172
NA CV1227 conserved hypothetical proteinchromosome CDS1290301 867 + 0.632065
NA CV1767 probable MutT/nudix family proteinchromosome CDS1922648 396 - 0.631313
NA CV1376 probable ATPase associated with chromosome architecturechromosome CDS1451057 1332 - 0.657658
NA CV2396 probable integrase/recombinase proteinchromosome CDS2579083 1089 - 0.685032
NA CV3385 conserved hypothetical proteinchromosome CDS3679366 519 - 0.657033
NA CV3671 probable methylated-DNA-[protein]-cysteine S-methyltransferasechromosome CDS3973018 465 - 0.709677
NA CV2905 probable NAD diphosphatasechromosome CDS3182301 798 + 0.68797
NA CV1248 probable transposasechromosome CDS1313679 1044 - 0.583333
NA CV3849 probable serine/threonine kinasechromosome CDS4153704 897 - 0.647715
NA CV3910 conserved hypothetical proteinchromosome CDS4224299 414 + 0.681159
NA CV3851 probable prophage integrasechromosome CDS4155884 1272 + 0.647799
NA CV2556 probable transposasechromosome CDS2750616 1005 + 0.583085
NA CV2667 conserved hypothetical proteinchromosome CDS2880726 531 - 0.564972
NA CV3454 probable DNA-directed DNA polymerase, bacteriophage-typechromosome CDS3750716 843 + 0.676157
NA CV2211 conserved hypothetical proteinchromosome CDS2381580 504 + 0.684524
NA CV2751 probable exonucleasechromosome CDS2987133 624 - 0.684295
NA CV2111 probable methyltransferasechromosome CDS2300705 777 - 0.554698
NA CV2359 probable uracil-DNA glycosylasechromosome CDS2545838 582 + 0.689003
NA CV0328 conserved hypothetical proteinchromosome CDS346244 513 + 0.680312
NA CV3869 probable DNA-binding protein hu-betachromosome CDS4173849 270 + 0.625926
NA CV2224 probable transposasechromosome CDS2399187 1044 + 0.583333
NA CV0628 probable deoxyribonucleasechromosome CDS658590 789 - 0.707224
NA CV0126 conserved hypothetical proteinchromosome CDS138791 534 + 0.559925
NA CV3720 conserved hypothetical proteinchromosome CDS4019276 771 - 0.662776
ADA CV0391 methylated-DNA-[protein]-cysteineS-methyltransfe rasechromosome CDS405512 1059 + 0.612842
alkA CV3195 DNA-3-methyladenine glycosidase IIchromosome CDS3479397 894 - 0.732662
alkB CV3196 alkylated DNA repair protein, AlkB proteinchromosome CDS3480294 648 - 0.722222
alkD CV0164 DNA alkylation repair enzymechromosome CDS173742 690 + 0.688406
dbpA CV2853 ATP-dependent RNA helicase dbpAchromosome CDS3109783 1383 + 0.671005
dinG CV1991 ATP-dependent DNA helicasechromosome CDS2169184 2124 - 0.661959
dinP CV4363 DNA-damage-inducible protein Pchromosome CDS4706267 1491 - 0.701543
dnaA CV0001 chromosomal replication iniciator protein DnaAchromosome CDS245 1404 + 0.641026
dnaB CV2502 replicative DNA helicasechromosome CDS2693681 1407 - 0.668799
dnaE CV0911 DNA-directed DNA polymerase III, alpha subunitchromosome CDS940091 3435 - 0.65182
dnaG CV3763 DNA primasechromosome CDS4062014 1797 - 0.652198
dnaN CV0002 DNA-directed DNA polymerase, beta subunitchromosome CDS1691 1110 + 0.624324
dnaQ CV1257 DNA-directed DNA polymerase, epsilon chainchromosome CDS1322170 720 + 0.651389
dnaX CV1610 DNA polymerase subunits gamma and tauchromosome CDS1737175 1920 + 0.699479
endA CV1988 deoxyribonuclease Ichromosome CDS2166685 663 + 0.653092
exoA CV4247 exodeoxyribonuclease IIIchromosome CDS4584103 777 - 0.642214
fis CV0545 DNA-binding protein Fischromosome CDS583599 237 + 0.57384
gyrA CV2298 DNA gyrase, subunit Achromosome CDS2485398 2601 + 0.655133
gyrB CV0003 DNA gyrase subunit Bchromosome CDS3006 2316 + 0.623489
himD CV3045 integration host factor beta-subunitchromosome CDS3322686 315 - 0.6
holA CV0507 DNA-directed DNA polymerase, delta subunitchromosome CDS533461 942 + 0.704883
holB CV3722 DNA-directed DNA polymerase III, delta subunitchromosome CDS4020502 1005 - 0.700498
holC CV2913 DNA polymerase III, chi subunitchromosome CDS3192227 426 - 0.607981
hrpA CV1516 ATP-dependent helicase hrpAchromosome CDS1619553 3936 - 0.655996
hupB1 CV2554 DNA-binding protein hu-betachromosome CDS2747507 270 - 0.607407
hupB2 CV2163 DNA-binding protein hu-betachromosome CDS2337863 273 + 0.652015
ihfA CV1354 integration host factor alpha-subunitchromosome CDS1427104 303 + 0.554455
intB CV0651 prophage CP4-like integrasechromosome CDS680663 1194 - 0.59464
lig CV3903 DNA ligasechromosome CDS4213148 2466 - 0.702352
mfd CV1146 transcription-repair coupling factorchromosome CDS1201342 3393 - 0.681403
mutL CV1342 DNA mismatch repair proteinchromosome CDS1412833 1896 - 0.700949
mutM CV4062 DNA-formamidopyrimidine glycosylasechromosome CDS4392630 813 + 0.693727
mutS CV3661 DNA mismatch repair proteinchromosome CDS3960895 2622 + 0.667811
mutT CV1787 ADPribose diphosphatasechromosome CDS1942604 537 + 0.62756
mutY CV3703 A/G-specific DNA glycosylasechromosome CDS4003498 1044 - 0.695402
nth CV3293 endonuclease IIIchromosome CDS3583852 633 + 0.658768
ntpA CV2960 ATP diphosphatasechromosome CDS3239955 450 - 0.695556
ogt CV1423 methylated-DNA-[protein]-cysteineS-methyltransfe rasechromosome CDS1501655 510 - 0.721569
parC CV0075 DNA topoisomerase IV subunit Achromosome CDS86462 2352 - 0.68665
parE CV1113 topoisomerase IV subunit Bchromosome CDS1164622 1968 + 0.672764
phrB CV3481 deoxyribodipyrimidine photo-lyasechromosome CDS3776451 1416 - 0.670198
polA CV0779 DNA-directed DNA polymerase Ichromosome CDS802574 2787 + 0.655185
priA CV1124 primosomal protein N`chromosome CDS1177078 2184 + 0.717491
priB CV3639 primosomal replication proteinchromosome CDS3938359 300 - 0.583333
radC CV3079 DNA repair protein RadCchromosome CDS3354739 675 - 0.638519
rdgC CV3548 recombination associated protein RdgCchromosome CDS3855646 996 + 0.661647
recA CV1607 RecA proteinchromosome CDS1733775 1053 - 0.633428
recB CV4076 exodeoxyribonuclease V, beta subunitchromosome CDS4409925 3591 - 0.717627
recC CV4077 exodeoxyribonuclease V, gamma subunitchromosome CDS4413512 3198 - 0.717636
recD CV4073 exodeoxyribonuclease V, alpha subunitchromosome CDS4405946 1698 - 0.730271
recG CV0933 ATP-dependent DNA helicasechromosome CDS966586 2049 + 0.697901
recJ CV2475 exodeoxyribonuclease VIIchromosome CDS2662565 1689 - 0.674364
recN CV2321 DNA repair protein recNchromosome CDS2511759 1671 - 0.680431
recO CV2069 DNA repair proteinchromosome CDS2255656 738 + 0.716802
recQ CV0477 ATP-dependent DNA helicase recQchromosome CDS498617 1830 + 0.674317
recR CV1612 DNA repair DNA recombination zinc-finger proteinchromosome CDS1739566 597 + 0.666667
rep CV4068 ATP-dependent DNA helicasechromosome CDS4398913 2022 + 0.635015
rhlE1 CV2892 ATP-dependent RNA helicasechromosome CDS3168075 1320 + 0.681061
rhlE2 CV2841 ATP-dependent RNA helicasechromosome CDS3096390 1263 + 0.702296
rhlE3 CV0383 ATP-dependent RNA helicasechromosome CDS396849 1419 + 0.680056
rhlE4 CV1003 ATP-dependent RNA helicasechromosome CDS1042241 1326 + 0.661388
rnhA CV1256 ribonuclease Hchromosome CDS1321674 444 + 0.641892
rnhB CV2210 ribonuclease HIIchromosome CDS2380982 597 + 0.693467
ruvA CV4223 holliday junction DNA helicasechromosome CDS4557480 594 - 0.656566
ruvB CV4215 holliday junction DNA helicase ruvBchromosome CDS4549877 1038 - 0.687861
ruvC CV4225 crossover junction endodeoxyribonucleasechromosome CDS4559440 531 - 0.677966
sbcB CV1329 exodeoxyribonuclease Ichromosome CDS1398832 1419 - 0.689218
smf CV4267 smf proteinchromosome CDS4601094 1080 + 0.742593
ssb CV1889 single-strand DNA-binding proteinchromosome CDS2056169 471 - 0.677282
tag CV1945 DNA-3-methyladenine glycosylase Ichromosome CDS2118007 570 - 0.668421
topA CV4269 DNA topoisomerasechromosome CDS4602812 2310 + 0.643723
umuC CV2612 umuC proteinchromosome CDS2819962 906 + 0.699779
ung CV0232 uracil-DNA glycosylasechromosome CDS241078 717 - 0.714086
uvrA CV1893 excinuclease ABC, subunit Achromosome CDS2059264 2832 + 0.665607
uvrB CV3152 excinuclease ABC subunit Bchromosome CDS3436458 2013 - 0.639841
uvrC CV1305 excinuclease ABC subunit Cchromosome CDS1374848 1806 + 0.649502
uvrD CV0205 DNA helicase IIchromosome CDS215313 2142 + 0.676937
xerC CV2372 integrase/recombinase XerCchromosome CDS2556799 900 - 0.661111
xerD CV3670 integrase/recombinasechromosome CDS3972144 888 - 0.689189
xseA CV3564 exodeoxyribonuclease, VII large subunitchromosome CDS3870572 1365 + 0.695238
xseB CV2690 exodeoxyribonuclease VII, small subunitchromosome CDS2912974 234 + 0.58547
xthA CV0877 exodeoxyribonuclease IIIchromosome CDS905676 774 + 0.669251