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2024-05-03 12:56:08

Gene list

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COG category: Replication, recombination and repair
Organism: Leifsonia xyli subsp. xyli str. CTCB07, CTCB07

Number of genes found: 158

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Leifsonia xyli subsp. xyli str. CTCB07, CTCB07
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA Lxx24100 hypothetical proteinchromosome CDS2469490 198 + 0.641414
NA Lxx01500 phage-related integrasechromosome CDS148962 924 + 0.647186
NA Lxx13462 transposasechromosome CDS1398860 282 + 0.617021
NA Lxx09220 ATP-dependent DNA helicasechromosome CDS938696 3132 + 0.740102
NA Lxx00450 phage-related integrasechromosome CDS46604 1305 - 0.641379
NA Lxx01410 conserved hypothetical proteinchromosome CDS139277 1677 + 0.6935
NA Lxx12040 serine/threonine kinasechromosome CDS1245154 1416 + 0.673729
NA Lxx22840 hypothetical proteinchromosome CDS2358585 738 - 0.688347
NA Lxx05870 conserved hypothetical proteinchromosome CDS595222 3816 + 0.703354
NA Lxx04780 hypothetical proteinchromosome CDS478881 1026 + 0.696881
NA Lxx12955 transposasechromosome CDS1350386 645 + 0.613953
NA Lxx03480 conserved hypothetical proteinchromosome CDS345976 1044 + 0.679119
NA Lxx07450 phage-related integrasechromosome CDS742878 564 + 0.671986
NA Lxx22450 transposase, undefinedchromosome CDS2317088 966 + 0.684265
NA Lxx22380 transposasechromosome CDS2310623 234 - 0.632479
NA Lxx08820 phage-related integrasechromosome CDS894890 732 + 0.620219
NA Lxx05765 phage-related proteinchromosome CDS586105 195 - 0.610256
NA Lxx24810 hypothetical proteinchromosome CDS2533819 144 - 0.645833
NA Lxx17210 transposasechromosome CDS1783163 684 + 0.657895
NA Lxx08670 DNA polymerase Ichromosome CDS876002 1713 + 0.711617
NA Lxx20840 DNA glycosylasechromosome CDS2139972 786 + 0.743003
NA Lxx13040 phage-related integrasechromosome CDS1358120 1209 - 0.669148
NA Lxx20770 ATP-dependent DNA helicasechromosome CDS2131441 2364 - 0.719966
NA Lxx13020 transposasechromosome CDS1356488 174 + 0.632184
NA Lxx11560 electron transport proteinchromosome CDS1191366 366 + 0.661202
NA Lxx03690 transposasechromosome CDS375552 306 + 0.640523
NA Lxx04080 DNA polymerase III, delta prime subunitchromosome CDS410517 1191 + 0.707809
NA Lxx09740 DNA methyltransferasechromosome CDS996379 573 - 0.727749
NA Lxx08850 phage-related integrasechromosome CDS900553 1149 + 0.630113
NA Lxx14270 DNA polymerase IVchromosome CDS1471740 1245 - 0.709237
NA Lxx14028 conserved hypothetical proteinchromosome CDS1452533 291 + 0.618557
NA Lxx11820 DNA polymerase III, epsilon subunitchromosome CDS1216073 684 - 0.69152
NA Lxx13910 transposase, undefinedchromosome CDS1440446 417 - 0.635492
NA Lxx00930 conserved hypothetical proteinchromosome CDS88704 696 - 0.686782
NA Lxx16370 integral membrane proteinchromosome CDS1703382 627 + 0.720893
NA Lxx10605 MutT-like domain proteinchromosome CDS1088437 447 + 0.612975
NA Lxx09210 conserved hypothetical proteinchromosome CDS938373 231 - 0.683983
NA Lxx22830 fragment of phage proteinchromosome CDS2357667 909 + 0.706271
NA Lxx05670 integrasechromosome CDS577677 906 + 0.715232
NA Lxx11910 UvrA-like proteinchromosome CDS1225553 2391 + 0.674195
NA Lxx08780 DNA glycosylasechromosome CDS888898 993 + 0.672709
NA Lxx08340 ATP-dependent RNA helicasechromosome CDS838765 2436 + 0.676108
NA Lxx19510 DNA-binding proteinchromosome CDS2009897 339 + 0.737463
NA Lxx03570 phage-related integrasechromosome CDS358429 1305 - 0.641379
NA Lxx09260 ATP-dependent DNA helicase IIchromosome CDS948188 1713 + 0.708114
NA Lxx08650 MutT-like domain proteinchromosome CDS874916 486 - 0.687243
NA Lxx10920 conserved hypothetical proteinchromosome CDS1115378 468 + 0.666667
NA Lxx07490 ATP-dependent RNA helicasechromosome CDS748683 2166 + 0.683287
NA Lxx10870 ATPase related to the helicase subunitchromosome CDS1109786 1341 + 0.696495
NA Lxx14720 DNA polymerase III, delta subunitchromosome CDS1527708 1041 - 0.68684
NA Lxx12825 single-strand DNA-binding proteinchromosome CDS1335053 441 - 0.673469
NA Lxx21555 phage-related integrasechromosome CDS2217969 939 - 0.594249
NA Lxx09230 ATP-dependent DNA helicasechromosome CDS941854 3378 + 0.711368
NA Lxx17510 sec-independent protein TadDchromosome CDS1818188 942 - 0.720807
NA Lxx08825 integrasechromosome CDS895734 315 + 0.577778
NA Lxx02510 DNA methyltransferasechromosome CDS250083 1224 + 0.635621
NA Lxx19030 serine/threonine kinasechromosome CDS1964172 1191 + 0.723762
NA Lxx24970 DNA-binding HU proteinchromosome CDS2551842 285 - 0.698246
NA Lxx22660 transposasechromosome CDS2335510 225 + 0.622222
NA Lxx14785 conserved hypothetical proteinchromosome CDS1540320 357 - 0.666667
NA Lxx24280 phage-related integrase/recombinasechromosome CDS2489276 771 + 0.679637
NA Lxx04460 exodeoxyribonuclease IIIchromosome CDS447490 837 - 0.707288
NA Lxx12980 transposase-truncatedchromosome CDS1353209 237 + 0.632911
NA Lxx18910 hypothetical proteinchromosome CDS1949807 993 - 0.731118
NA Lxx11930 conserved hypothetical proteinchromosome CDS1231426 1788 + 0.704698
NA Lxx24805 integrasechromosome CDS2533048 768 - 0.678385
NA Lxx16640 DNA polymerase III, epsilon subunitchromosome CDS1730151 579 + 0.704663
NA Lxx02410 transposasechromosome CDS240436 396 + 0.636364
NA Lxx03710 chromosome pseudo377904 237 + 0.632911
35 Lxx23910 phage recombination proteinchromosome CDS2456456 786 + 0.645038
47 Lxx23900 phage recombination proteinchromosome CDS2455440 996 + 0.659639
ada Lxx07100 methylated-DNA-protein-cysteineS-methyltransferasechromosome CDS709019 498 - 0.698795
alkA Lxx06100 DNA-3-methyladenine glycosylase IIchromosome CDS621730 642 + 0.747664
deaD Lxx22100 ATP-dependent RNA helicasechromosome CDS2280433 1200 - 0.700833
deaD Lxx13450 ATP-dependent RNA helicasechromosome CDS1396913 1770 - 0.692655
dnaA Lxx00010 chromosomal replication initiator proteinchromosome CDS225 1422 + 0.600563
dnaB Lxx25140 replicative DNA helicasechromosome CDS2565710 1374 - 0.639738
dnaE Lxx15160 DNA polymerase III, alpha subunitchromosome CDS1575846 3516 - 0.650171
dnaG Lxx08520 DNA primasechromosome CDS860957 1863 + 0.690284
dnaN Lxx00020 DNA polymerase III, beta subunitchromosome CDS2083 1146 + 0.602094
dnaZ Lxx03430 DNA polymerase III, gamma and tau subunitchromosome CDS338721 2370 + 0.732068
gyrA Lxx10360 DNA gyrase subunit Achromosome CDS1058029 2472 - 0.693366
gyrA Lxx00070 DNA gyrase subunit Achromosome CDS7949 2577 + 0.637175
gyrB Lxx00060 DNA gyrase subunit Bchromosome CDS5914 1992 + 0.62751
gyrB Lxx10320 DNA gyrase subunit Bchromosome CDS1055878 2085 + 0.657554
int Lxx21600 integrasechromosome CDS2219734 207 - 0.599034
ligA Lxx14380 DNA ligasechromosome CDS1483761 2244 - 0.69697
mfd Lxx17280 transcription-repair coupling factorchromosome CDS1791299 3615 - 0.690733
mut Lxx00440 MutT-like domain proteinchromosome CDS46023 351 + 0.57265
mutM Lxx09800 formamidopyrimidine-DNA glycosylasechromosome CDS1001513 894 + 0.673378
mutM Lxx00140 formamidopyrimidine-DNA glycosylasechromosome CDS13624 864 - 0.657407
mutT Lxx05660 NUDIX hydrolasechromosome CDS577036 645 + 0.724031
mutT3 Lxx08660 MutT/nudix family proteinchromosome CDS875457 480 + 0.685417
nth Lxx07190 adenine glycosylasechromosome CDS721323 870 - 0.743678
nudC Lxx09250 NADH pyrophosphatasechromosome CDS947172 1020 + 0.722549
phrB Lxx09540 DNA photolyasechromosome CDS978027 1401 - 0.713776
pknA Lxx00220 serine/threonine kinasechromosome CDS21267 1722 - 0.678281
pknB Lxx00210 serine/threonine kinasechromosome CDS19497 1698 - 0.6649
pknK Lxx24920 serine/threonine kinasechromosome CDS2541873 2925 - 0.727521
polA Lxx11410 DNA polymerase Ichromosome CDS1169741 2688 + 0.677083
priA Lxx11160 primosomal proteinchromosome CDS1143441 1974 + 0.75228
recA Lxx16030 recombination repairing proteinchromosome CDS1667787 1125 - 0.646222
recF Lxx00040 DNA replication and repair protein RecFchromosome CDS4160 1158 + 0.634715
recG Lxx09750 ATP-dependent DNA helicase RecGchromosome CDS997029 2220 + 0.711712
recN Lxx05640 DNA repair protein RecNchromosome CDS570666 1740 + 0.743103
recO Lxx14470 single-stranded DNA binding proteinchromosome CDS1499991 750 - 0.701333
recQ Lxx21830 ATP-dependent DNA helicasechromosome CDS2246845 1896 - 0.728376
recR Lxx03440 recombination protein RecRchromosome CDS341094 597 + 0.686767
rhlE Lxx09180 ATP-dependent RNA helicasechromosome CDS935641 1476 - 0.687669
rhlE Lxx20780 ATP-dependent RNA helicasechromosome CDS2133858 1596 + 0.739975
rin Lxx22255 DNA invertasechromosome CDS2297404 381 - 0.656168
rnhB Lxx14810 ribonuclease HIIchromosome CDS1541158 681 - 0.688693
ruvA Lxx10780 holliday junction DNA helicasechromosome CDS1099269 624 + 0.713141
ruvB Lxx10770 holliday junction DNA helicasechromosome CDS1099889 1044 + 0.707854
ruvC Lxx10760 holliday juction resolvasechromosome CDS1098646 627 + 0.746412
smf Lxx14770 DNA processing factorchromosome CDS1537083 1236 - 0.692557
ssb Lxx25170 single-strand DNA-binding proteinchromosome CDS2568398 513 - 0.654971
tagI Lxx07090 DNA-3-methyladenine glycosydase Ichromosome CDS708405 618 - 0.697411
tnp Lxx22430 transposase, undefinedchromosome CDS2314172 687 + 0.620087
tnp Lxx14930 transposase, ISlxx5chromosome CDS1550882 1212 + 0.633663
tnp Lxx22290 transposase, undefinedchromosome CDS2301247 579 - 0.626943
tnp Lxx07770 transposase, ISlxx5chromosome CDS781177 1212 + 0.633663
tnp Lxx13790 transposase, undefinedchromosome CDS1429810 591 - 0.62775
tnp Lxx22590 transposase, undefinedchromosome CDS2327614 1203 - 0.65586
tnp Lxx18760 transposase, ISlxx5chromosome CDS1937178 1212 - 0.633663
tnp Lxx22540 transposase, ISlxx5chromosome CDS2322653 1212 + 0.633663
tnp Lxx20610 transposase, ISlxx5chromosome CDS2108480 1212 - 0.633663
tnp Lxx21160 transposase, ISlxx5chromosome CDS2172615 1212 + 0.633663
tnp Lxx04320 transposase, ISlxx5chromosome CDS434868 1212 + 0.633663
tnp Lxx09390 transposase, ISlxx5chromosome CDS961837 1212 + 0.633663
tnp Lxx15810 transposase, ISlxx5chromosome CDS1644326 1212 + 0.633663
tnp Lxx04280 transposase, undefinedchromosome CDS432431 681 + 0.631424
tnp Lxx05430 transposase, ISlxx5chromosome CDS547250 1212 + 0.633663
tnp Lxx10070 transposase, ISlxx5chromosome CDS1028337 1212 + 0.633663
tnp Lxx05960 transposase, ISlxx5chromosome CDS605571 1212 + 0.633663
tnp Lxx00570 transposase, ISlxx5chromosome CDS57113 1212 + 0.633663
tnp Lxx13770 transposase, ISlxx5chromosome CDS1425682 1212 - 0.633663
tnp Lxx14430 transposase, ISlxx5chromosome CDS1489552 1212 + 0.633663
tnp Lxx13030 transposase, IS1245chromosome CDS1356788 816 + 0.659314
topA Lxx04060 DNA topoisomerase Ichromosome CDS406905 2943 + 0.678219
tpase Lxx13780 transposase, ISlxx2chromosome CDS1428633 1110 + 0.644144
tpase Lxx03700 transposase, ISlxx2chromosome CDS376712 1110 + 0.644144
tpase Lxx12970 transposase, ISlxx2chromosome CDS1352017 1110 + 0.644144
tpase Lxx22390 transposase, ISlxx2chromosome CDS2310939 1110 - 0.644144
tpase1 Lxx22700 transposase, ISlxx1chromosome CDS2341541 810 + 0.617284
tpase1 Lxx13880 transposase, ISlxx1-degeneratedchromosome CDS1438256 1068 + 0.670412
tpase2 Lxx13900 transposase, ISlxx1-degeneratedchromosome CDS1439713 663 + 0.613876
tpase2 Lxx05530 transposase, ISlxx1chromosome CDS559248 810 - 0.617284
ung Lxx18890 uracil-DNA glycosylasechromosome CDS1948410 693 - 0.727273
uvrA Lxx11470 UvrA-like proteinchromosome CDS1180186 2991 + 0.665329
uvrB Lxx11450 excinuclease ABC subunit Bchromosome CDS1176755 2067 + 0.663764
uvrC Lxx11480 excinuclease ABC subunit Cchromosome CDS1183187 1971 + 0.687468
uvrD Lxx19740 ATP-dependent DNA helicase IIchromosome CDS2035110 2502 - 0.670264
xbaIM Lxx01520 DNA methyltransferasechromosome CDS150188 858 + 0.679487
xpbC Lxx17950 DNA repair helicasechromosome CDS1859018 1641 + 0.700792
xseA Lxx16750 exodeoxyribonuclease VII large subunitchromosome CDS1743008 1380 + 0.718841
xseB Lxx16770 exodeoxyribonuclease VII small subunitchromosome CDS1744389 279 + 0.727599
xthA Lxx23390 exodeoxyribonuclease IIIchromosome CDS2406200 843 + 0.691578