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2024-05-03 11:26:38

Gene list

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COG category: Replication, recombination and repair
Organism: Staphylococcus epidermidis ATCC 12228, ATCC 12228

Number of genes found: 189

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Staphylococcus epidermidis ATCC 12228, ATCC 12228
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA SE1276 ComEAchromosome CDS1307559 675 - 0.265185
NA SE1245 ATP-dependent RNA helicasechromosome CDS1274433 1347 - 0.310319
NA SE_p203 replication initiator proteinpSE-12228-02 CDS1769 921 + 0.298588
NA SE1244 endonuclease IVchromosome CDS1273533 891 - 0.337823
NA SE1302 deoxyribonucleasechromosome CDS1329460 2433 - 0.325524
NA SE1273 conserved hypothetical proteinchromosome CDS1303779 975 - 0.266667
NA SE1183 ADP-ribose pyrophosphatasechromosome CDS1218672 543 - 0.327808
NA SE1366 formamidopyrimidine-DNA glycosylasechromosome CDS1395022 873 - 0.310424
NA SE_p506 putative Tn552 DNA-invertase bin3pSE-12228-05 CDS6442 516 - 0.313953
NA SE_p411 resolvase/integrasepSE-12228-04 CDS9800 480 - 0.333333
NA SE_p502 conserved hypothetical proteinpSE-12228-05 CDS509 1719 + 0.283886
NA SE1170 probable ATP-dependent DNA helicase RecQchromosome CDS1207687 1380 - 0.315217
NA SE1249 DNA primasechromosome CDS1279125 1797 - 0.293267
NA SE1455 transposasechromosome CDS1503714 1014 - 0.333333
NA SE1203 exodeoxyribonuclease, small subunitchromosome CDS1241150 231 - 0.30303
NA SE1325 holliday junction DNA helicasechromosome CDS1357300 603 - 0.321725
NA SE1453 conserved hypothetical proteinchromosome CDS1501935 1014 + 0.331361
NA SE1319 truncated transposasechromosome CDS1350920 117 + 0.316239
NA SE1309 conserved hypothetical proteinchromosome CDS1337251 1281 + 0.346604
NA SE1359 chromosome replication initiation/membrane attachment proteinchromosome CDS1390165 1371 - 0.30124
NA SE1318 single-strand DNA-specific exonucleasechromosome CDS1348171 2274 - 0.318382
NA SE1336 DNA repair protein RadC-like proteinchromosome CDS1363755 681 - 0.30837
NA SE1292 IS605/IS200-like transposasechromosome CDS1320239 600 - 0.298333
NA SE1363 truncated transposasechromosome CDS1393654 150 - 0.24
NA SE1200 DNA repair proteinchromosome CDS1237832 1677 - 0.323792
NA SE1340 DNA-3-methyladenine glycosidasechromosome CDS1369575 561 + 0.308378
NA SE1324 holliday junction DNA helicasechromosome CDS1356282 1005 - 0.373134
NA SE_p305 hypothetical proteinpSE-12228-03 CDS5519 450 + 0.351111
NA SE1378 DNA polymerase III alpha chainchromosome CDS1412437 3198 - 0.315822
NA SE_p509 DNA-invertasepSE-12228-05 CDS10706 492 + 0.347561
NA SE_p307 hypothetical proteinpSE-12228-03 CDS7001 684 + 0.394737
NA SE_p303 recombinasepSE-12228-03 CDS4215 645 + 0.36124
NA SE_p608 replication proteinpSE-12228-06 CDS4425 825 + 0.265455
NA SE1358 primosomal proteinchromosome CDS1389245 921 - 0.311618
NA SE1181 site-specific recombinasechromosome CDS1217188 888 - 0.333333
NA SE_p510 Tn552 transposasepSE-12228-05 CDS11169 1443 + 0.310464
NA SE1253 DNA repair protein RecOchromosome CDS1284405 762 - 0.309711
NA SE_p410 recombinasepSE-12228-04 CDS9094 612 - 0.323529
NA SE1388 conserved hypothetical proteinchromosome CDS1424562 948 - 0.333333
NA SE_p416 putative resolvasepSE-12228-04 CDS16576 549 + 0.275046
NA SE1219 truncated transposasechromosome CDS1254038 270 - 0.27037
NA SE1299 conserved hypothetical proteinchromosome CDS1325747 429 - 0.337995
NA SE_p415 hypothetical proteinpSE-12228-04 CDS13765 1836 + 0.245098
NA SE1454 truncated transposasechromosome CDS1503178 117 - 0.358974
NA SE1204 exodeoxyribonuclease large subunitchromosome CDS1241373 1338 - 0.310912
NA SE_p412 resolvasepSE-12228-04 CDS10848 588 - 0.256803
NA SE1367 DNA polymerase Ichromosome CDS1395910 2712 - 0.311947
SE0001 chromosomal replication initiator proteinchromosome CDS362 1356 + 0.337021
SE0002 DNA polymerase III beta subunitchromosome CDS2026 1134 + 0.318342
SE0003 DNA repair and genetic recombination proteinchromosome CDS3822 1116 + 0.344982
SE0004 DNA gyrase subunit Bchromosome CDS4948 1932 + 0.36853
SE0005 DNA gyrase subunit Achromosome CDS6916 2682 + 0.367263
SE0015 replicative DNA helicasechromosome CDS20889 1401 + 0.394718
SE0036 cassette chromosome recombinase Bchromosome CDS42441 1629 - 0.344997
SE0037 cassette chromosome recombinase Achromosome CDS44091 1350 - 0.345926
SE0038 conserved hypothetical proteinchromosome CDS45674 1794 - 0.345039
SE0045 truncated transposasechromosome CDS52968 252 - 0.25
SE0051 conserved hypothetical proteinchromosome CDS55611 1014 - 0.330375
SE0056 cassette chromosome recombinase Bchromosome CDS58592 1629 - 0.334561
SE0057 cassette chromosome recombinase Achromosome CDS60217 1362 - 0.331865
SE0064 truncated transposasechromosome CDS67312 177 - 0.276836
SE0065 truncated transposasechromosome CDS67457 123 - 0.276423
SE0067 truncated transposasechromosome CDS67822 171 - 0.321637
SE0071 transposase for IS-like elementchromosome CDS70397 675 + 0.343704
SE0076 truncated transposasechromosome CDS75779 1662 - 0.291817
SE0079 transposase for IS-like elementchromosome CDS80680 675 - 0.345185
SE0090 transposase for IS-like elementchromosome CDS89170 675 - 0.345185
SE0101 transposasechromosome CDS97329 585 + 0.321368
SE0161 transposasechromosome CDS149562 378 - 0.328042
SE0162 transposasechromosome CDS150389 315 - 0.314286
SE0184 Staphopain ,Cysteine Proteinasechromosome CDS173502 1188 - 0.329966
SE0257 truncated transposasechromosome CDS257220 117 + 0.333333
SE0281 triacylglycerol lipase precursorchromosome CDS277291 2067 + 0.344944
SE0282 tansposasechromosome CDS280023 1014 + 0.330375
SE0351 uracil-DNA glycosylasechromosome CDS350478 651 + 0.360983
SE0355 truncated transposasechromosome CDS353650 138 - 0.326087
SE0381 putative endonuclease IIIchromosome CDS377909 636 + 0.309748
SE0453 conserved hypothetical proteinchromosome CDS446379 465 + 0.292473
SE0463 putative deoxyribodipyrimidine photolyasechromosome CDS456638 1374 + 0.290393
SE0483 truncated transposasechromosome CDS474611 117 - 0.316239
SE0495 truncated transposasechromosome CDS485083 117 + 0.290598
SE0497 hypothetical proteinchromosome CDS485621 822 - 0.336983
SE0501 ATP-dependent DNA helicase RecQchromosome CDS490043 1782 + 0.335578
SE0532 comF operon protein 1chromosome CDS525101 903 + 0.326689
SE0541 exinuclease ABC subunit Bchromosome CDS534698 1986 + 0.343404
SE0542 exinuclease ABC subunit Achromosome CDS536691 2835 + 0.351323
SE0568 conserved hypothetical proteinchromosome CDS565718 498 - 0.35743
SE0590 truncated transposasechromosome CDS583325 117 + 0.324786
SE0598 conserved hypothetical proteinchromosome CDS587363 387 + 0.284238
SE0628 conserved hypothetical proteinchromosome CDS613761 1014 + 0.330375
SE0629 truncated transposasechromosome CDS614871 1680 - 0.294643
SE0651 truncated transposasechromosome CDS635887 273 + 0.326007
SE0652 truncated transposasechromosome CDS636213 285 + 0.294737
SE0663 ATP-dependent nuclease subunit Bchromosome CDS647127 3480 + 0.311494
SE0664 ATP-dependent nuclease subunit Achromosome CDS650575 3675 + 0.317551
SE0667 transposasechromosome CDS656620 1014 + 0.330375
SE0668 truncated transposasechromosome CDS658052 117 + 0.324786
SE0675 conserved hypothetical proteinchromosome CDS666519 1014 + 0.332347
SE0687 conserved hypothetical proteinchromosome CDS678864 1014 - 0.331361
SE0706 UVRA-like proteinchromosome CDS696399 243 + 0.312757
SE0707 exinuclease ABC subunit Achromosome CDS696644 2013 + 0.326379
SE0710 recombinase Sinchromosome CDS699986 216 + 0.37037
SE0711 IS605/IS200-like transposasechromosome CDS700275 225 + 0.315556
SE0790 conserved hypothetical proteinchromosome CDS782198 627 + 0.275917
SE0808 truncated transposasechromosome CDS801301 273 + 0.322344
SE0809 truncated transposasechromosome CDS801627 348 + 0.295977
SE0823 conserved hypothetical proteinchromosome CDS815612 543 + 0.324125
SE0833 putative ribonuclease HIIIchromosome CDS827033 927 - 0.325782
SE0837 MutS-like proteinchromosome CDS830802 2349 + 0.340145
SE0839 excinuclease ABC subunit Cchromosome CDS833803 1803 + 0.33888
SE0888 PriA ,primosomal proteinchromosome CDS883754 2409 + 0.335824
SE0902 ATP-dependent DNA helicasechromosome CDS898608 2049 + 0.332845
SE0922 RNase HIIchromosome CDS921364 771 + 0.338521
SE0925 DNA processing Smf proteinchromosome CDS925144 873 + 0.331042
SE0926 DNA topoisomerase I topA-like proteinchromosome CDS926199 2070 + 0.348309
SE0928 xerC proteinchromosome CDS929825 891 + 0.301908
SE0940 DNA polymerase III, alpha chain PolC-typechromosome CDS942392 4329 + 0.340032
SE0963 RecA proteinchromosome CDS969196 1050 + 0.366667
SE0974 DNA mismatch repair proteinchromosome CDS980552 2622 + 0.322654
SE0975 DNA mismatch repair proteinchromosome CDS983188 1938 + 0.320949
SE0988 integrase XerD family proteinchromosome CDS998429 246 - 0.329268
SE1004 thermonucleasechromosome CDS1009484 546 + 0.331502
SE1005 truncated transposasechromosome CDS1010531 144 + 0.263889
SE1013 IS605/IS200-like transposasechromosome CDS1018572 600 + 0.293333
SE1028 exonuclease SbcDchromosome CDS1031283 1125 + 0.293333
SE1029 exonuclease SbcCchromosome CDS1032411 3030 + 0.266337
SE1036 topoisomerase IV subunit Bchromosome CDS1042879 2001 + 0.345827
SE1037 topoisomerase IV subunit Achromosome CDS1044876 2403 + 0.33042
SE1044 truncated transposasechromosome CDS1056099 117 - 0.324786
SE1046 DNA-damage repair proteinchromosome CDS1056833 1263 + 0.327791
SE1127 cell wall enzyme EbsBchromosome CDS1134905 396 + 0.320707
SE1130 putative 5'-3' exonucleasechromosome CDS1166265 879 - 0.321957
SE1133 conserved hypothetical proteinchromosome CDS1171783 1137 - 0.359719
SE1136 conserved hypothetical proteinchromosome CDS1174492 333 - 0.273273
SE1140 endonuclease-like proteinchromosome CDS1178549 660 - 0.328788
SE1141 chromosome replication initiation protein dnaDchromosome CDS1179198 687 - 0.299854
SE1143 dinG proteinchromosome CDS1181390 2709 - 0.29199
SE1160 DNA-binding protein IIchromosome CDS1198471 273 - 0.358974
SE1461 conserved hypothetical proteinchromosome CDS1511369 477 - 0.32914
SE1467 integrasechromosome CDS1516857 333 + 0.291291
SE1472 integrasechromosome CDS1518948 495 + 0.286869
SE1482 DNA topoisomerase III topBchromosome CDS1528014 2157 - 0.275846
SE1483 conserved hypothetical proteinchromosome CDS1530212 1305 - 0.224521
SE1484 hypothetical proteinchromosome CDS1531521 351 - 0.222222
SE1497 hypothetical proteinchromosome CDS1543862 2247 - 0.228304
SE1509 integrasechromosome CDS1556778 1080 + 0.265741
SE1525 conserved hypothetical proteinchromosome CDS1574590 1197 - 0.309942
SE1539 truncated transposasechromosome CDS1586509 117 - 0.350427
SE1552 A/G-specific adenine glycosylasechromosome CDS1607727 1044 - 0.337165
SE1579 DNA polymerase III, alpha chain PolC-typechromosome CDS1630940 555 + 0.327928
SE1580 DNA-damage inducible protein Pchromosome CDS1631525 1071 - 0.331466
SE1589 DNA ligasechromosome CDS1642880 1998 - 0.343343
SE1590 ATP-depentend DNA helicasechromosome CDS1644881 2190 - 0.33379
SE1612 transposition regulatory protein tnpBchromosome CDS1667568 2028 - 0.271203
SE1613 transposition regulatory protein tnpAchromosome CDS1669634 1152 - 0.258681
SE1649 DNA mismatch repair protein MutSchromosome CDS1703204 1617 + 0.296228
SE1679 ATP-dependent RNA helicasechromosome CDS1735734 1530 - 0.352941
SE1695 single strand DNA binding proteinchromosome CDS1750312 396 - 0.287879
SE1721 transposasechromosome CDS1772750 1014 - 0.332347
SE1828 DNA topoisomerase III topBchromosome CDS1869648 2136 - 0.303839
SE1832 conserved hypothetical proteinchromosome CDS1875001 171 + 0.280702
SE1839 truncated transposasechromosome CDS1883622 105 + 0.304762
SE1899 truncated transposasechromosome CDS1936165 117 - 0.333333
SE1900 transposasechromosome CDS1936700 1014 - 0.330375
SE1919 DNA-3-methyladenine glycosidasechromosome CDS1954147 618 + 0.357605
SE1983 transposasechromosome CDS2020021 1014 - 0.330375
SE1990 truncated transposasechromosome CDS2027402 147 + 0.312925
SE2039 conserved hypothetical proteinchromosome CDS2078976 2568 - 0.265187
SE2040 mutator protein mutTchromosome CDS2081836 408 - 0.308824
SE2079 transposasechromosome CDS2124060 1014 - 0.331361
SE2111 methylated-DNA--protein-cysteineS-methyltransferasechromosome CDS2155026 519 - 0.348748
SE2134 truncated transposasechromosome CDS2180208 117 - 0.324786
SE2150 conserved hypothetical proteinchromosome CDS2196733 432 + 0.289352
SE2153 truncated transposasechromosome CDS2199054 150 - 0.326667
SE2203 truncated transposasechromosome CDS2256022 168 + 0.303571
SE2205 hypothetical proteinchromosome CDS2259574 153 + 0.313726
SE2208 IS605/IS200-like transposasechromosome CDS2260642 600 - 0.3
SE2260 conserved hypothetical proteinchromosome CDS2327717 1014 - 0.330375
SE2280 transcription-repair coupling factorchromosome CDS2353479 3510 - 0.344444
SE2291 conserved hypothetical proteinchromosome CDS2365817 546 - 0.333333
SE2292 putative deoxyribonucleasechromosome CDS2366569 771 - 0.360571
SE2295 conserved hypothetical proteinchromosome CDS2370388 249 - 0.305221
SE2299 DNA polymerase III delta' subunitchromosome CDS2372619 927 - 0.296656
SE2305 recombination proteinchromosome CDS2382901 597 - 0.373534
SE2307 DNA polymerase III gamma and tau subunitschromosome CDS2383910 1707 - 0.335677
SE2316 conserved hypothetical proteinchromosome CDS2399129 387 - 0.346253
SE2345 integrase-like proteinchromosome CDS2425928 528 + 0.318182
SE2360 conserved hypothetical proteinchromosome CDS2441796 624 + 0.294872
SE2371 single-strand DNA-binding protein of phage phi PVLchromosome CDS2446584 510 - 0.388235