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2024-05-15 23:50:16

Gene list

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COG category: Replication, recombination and repair
Organism: Aquifex aeolicus VF5, VF5

Number of genes found: 100

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Aquifex aeolicus VF5, VF5
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
aa05 unknown proteinRecName: Full=Putative transposase aq_aa05; ece1 CDS2254 921 + 0.393051
aa09 integrase proteinRecName: Full=Probable integrase/recombinase aq_aa09; ece1 CDS5877 948 + 0.399789
aa19 putative proteinRecName: Full=Uncharacterized protein aq_aa19; ece1 CDS15620 339 - 0.368732
aa22 putative proteinRecName: Full=Uncharacterized protein aq_aa22; ece1 CDS18282 519 + 0.393064
aa24 putative proteinRecName: Full=Uncharacterized protein aq_aa24; ece1 CDS19683 366 - 0.415301
aa40 putative proteinRecName: Full=Uncharacterized protein aq_1391/aq_1640/aq_aa40; ece1 CDS37072 966 - 0.403727
apfA AP4A hydrolaseSubName: Full=AP4A hydrolase; chromosome CDS96893 405 + 0.427161
aq_041 putative proteinRecName: Full=UPF0102 protein aq_041; chromosome CDS26274 312 - 0.416667
aq_058 putative proteinRecName: Full=Uncharacterized protein aq_058; chromosome CDS37923 351 + 0.393162
aq_1006 hypothetical proteinRecName: Full=Probable DNA double-strand break repair Rad50 ATPase; chromosome CDS695010 2937 + 0.413687
aq_1037 putative proteinSubName: Full=Uncharacterized protein; chromosome CDS719238 444 - 0.391892
aq_1104 putative proteinRecName: Full=Uncharacterized protein aq_1104; chromosome CDS770996 1053 + 0.420703
aq_1106 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS772733 1104 + 0.443841
aq_1137 putative proteinSubName: Full=Uncharacterized protein; chromosome CDS794867 873 + 0.449026
aq_1191 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS838862 984 - 0.397358
aq_1286 putative proteinSubName: Full=Uncharacterized protein; chromosome CDS909166 846 - 0.437352
aq_1356 putative proteinRecName: Full=Uncharacterized protein aq_1356; chromosome CDS963309 435 + 0.402299
aq_1391 hypothetical proteinRecName: Full=Uncharacterized protein aq_1391/aq_1640/aq_aa40; chromosome CDS988669 966 + 0.403727
aq_1498 hypothetical proteinRecName: Full=Putative Holliday junction resolvase; EC=3.1.-.-; chromosome CDS1065593 396 - 0.441919
aq_1526 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1082598 918 + 0.418301
aq_1596 putative proteinSubName: Full=Uncharacterized protein; chromosome CDS1123763 684 - 0.362573
aq_1640 hypothetical proteinRecName: Full=Uncharacterized protein aq_1391/aq_1640/aq_aa40; chromosome CDS1151528 966 - 0.403727
aq_173 putative proteinSubName: Full=Uncharacterized protein; chromosome CDS106547 744 - 0.397849
aq_1761 putative proteinSubName: Full=Uncharacterized protein; chromosome CDS1239007 2037 - 0.418262
aq_1768 hypothetical proteinRecName: Full=Ribonuclease HIII; Short=RNase HIII; EC=3.1.26.4; chromosome CDS1245528 774 + 0.373385
aq_182 putative proteinSubName: Full=Uncharacterized protein; chromosome CDS111355 747 - 0.336011
aq_1909 putative proteinRecName: Full=Uncharacterized protein aq_1909; chromosome CDS1344366 930 + 0.41828
aq_1953 putative proteinRecName: Full=Crossover junction endodeoxyribonuclease RusA; EC=3.1.22.4; AltName: Full=Holliday junction nuclease RusA; AltName: Full=Holliday junction resolvase; chromosome CDS1373638 459 - 0.396514
aq_2086 putative proteinSubName: Full=Uncharacterized protein; chromosome CDS1468059 357 - 0.361345
aq_2108 putative proteinSubName: Full=Uncharacterized protein; chromosome CDS1485176 633 + 0.418641
aq_251 hypothetical proteinRecName: Full=Probable N-glycosylase/DNA lyase; Includes: RecName: Full=8-oxoguanine DNA glycosylase; EC=3.2.2.-; Includes: RecName: Full=DNA-(apurinic or apyrimidinic site) lyase; Short=AP lyase; EC=4.2.99.18; chromosome CDS160629 681 - 0.431718
aq_369 hypothetical proteinRecName: Full=CRISPR-associated endonuclease Cas1; EC=3.1.-.-; chromosome CDS245338 951 - 0.375394
aq_370 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS246281 534 - 0.410112
aq_373 putative proteinSubName: Full=Uncharacterized protein; chromosome CDS250518 660 - 0.418182
aq_374 putative proteinSubName: Full=Uncharacterized protein; chromosome CDS251158 1074 - 0.39013
aq_378 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS253592 1362 - 0.297357
aq_380 putative proteinSubName: Full=Uncharacterized protein; chromosome CDS254950 1122 - 0.31016
aq_381 putative proteinSubName: Full=Uncharacterized protein; chromosome CDS256087 900 - 0.34
aq_382 putative proteinSubName: Full=Uncharacterized protein; chromosome CDS257019 888 - 0.288288
aq_383 putative proteinSubName: Full=Uncharacterized protein; chromosome CDS257872 744 - 0.336022
aq_384 putative proteinSubName: Full=Uncharacterized protein; chromosome CDS258857 402 - 0.375622
aq_385 putative proteinSubName: Full=Uncharacterized protein; chromosome CDS259248 888 - 0.368243
aq_386 putative proteinSubName: Full=Uncharacterized protein; chromosome CDS260132 978 - 0.311861
aq_388 putative proteinRecName: Full=Uncharacterized protein aq_388; chromosome CDS263585 906 + 0.344371
aq_548 hypothetical proteinRecName: Full=Endonuclease V; EC=3.1.21.7; AltName: Full=Deoxyinosine 3endonuclease; AltName: Full=Deoxyribonuclease V; Short=DNase V; chromosome CDS372081 567 - 0.472663
aq_693 putative proteinRecName: Full=Uncharacterized protein aq_693; Flags: Precursor; chromosome CDS471539 1245 - 0.421687
aq_716 putative proteinSubName: Full=Uncharacterized protein; chromosome CDS489875 1395 - 0.396416
aq_791 putative proteinSubName: Full=Uncharacterized protein; chromosome CDS546645 492 + 0.439024
aq_820 putative proteinRecName: Full=Uncharacterized protein aq_820; chromosome CDS565822 597 - 0.368509
atpG2 ATP synthase F1 gamma subunitSubName: Full=ATP synthase F1 gamma subunit; chromosome CDS122663 1182 + 0.399323
deaD ATP-dependent RNA helicase DeaDSubName: Full=ATP-dependent RNA helicase DeaD; chromosome CDS417224 882 - 0.427438
dinG ATP-dependent helicase (DinG family)SubName: Full=ATP-dependent helicase (DinG family); chromosome CDS234590 1929 + 0.424572
dnaA chromosome replication initiator protein DnaARecName: Full=Chromosomal replication initiator protein DnaA; chromosome CDS208642 1200 - 0.4175
dnaB replicative DNA helicaseSubName: Full=Replicative DNA helicase; chromosome CDS1049037 1407 + 0.453447
dnaC DNA replication protein DnaCSubName: Full=DNA replication protein DnaC; chromosome CDS627868 708 - 0.443503
dnaE DNA polymerase III alpha subunitRecName: Full=DNA polymerase III subunit alpha; EC=2.7.7.7; chromosome CDS697943 3486 - 0.465003
dnaG DNA primaseRecName: Full=DNA primase; EC=2.7.7.-; chromosome CDS1062135 1497 - 0.420174
dnaN DNA polymerase III beta chainRecName: Full=DNA polymerase III subunit beta; EC=2.7.7.7; chromosome CDS1325853 1092 + 0.462454
dnaQ DNA polymerase III epsilon subunitRecName: Full=DNA polymerase III subunit epsilon; EC=2.7.7.7; chromosome CDS643713 609 - 0.426929
dnaX DNA polymerase III gamma subunitSubName: Full=DNA polymerase III gamma subunit; chromosome CDS1303882 1422 + 0.443038
dpbF DNA polymerase beta familySubName: Full=DNA polymerase beta family; chromosome CDS1012941 1746 - 0.45819
dplF N-terminus of phage SPO1 DNA polymeraseSubName: Full=N-terminus of phage SPO1 DNA polymerase; chromosome CDS1189596 588 + 0.420068
gyrA DNA gyrase A subunitRecName: Full=DNA gyrase subunit A; EC=5.99.1.3; chromosome CDS677905 2235 + 0.447427
gyrB gyrase BRecName: Full=DNA gyrase subunit B; EC=5.99.1.3; chromosome CDS710781 2379 - 0.469105
helX DNA helicaseSubName: Full=DNA helicase; chromosome CDS1448818 1593 - 0.396108
himA DNA binding protein HURecName: Full=DNA-binding protein HU; chromosome CDS1057616 285 - 0.364912
ihfB integration host factor beta subunitSubName: Full=Integration host factor beta subunit; chromosome CDS1530746 303 + 0.409241
lig DNA ligase (ATP dependent)RecName: Full=Probable DNA ligase; EC=6.5.1.1; AltName: Full=Polydeoxyribonucleotide synthase [ATP]; chromosome CDS990701 1758 - 0.465301
ligA DNA ligase (NAD dependent)RecName: Full=DNA ligase; EC=6.5.1.2; AltName: Full=Polydeoxyribonucleotide synthase [NAD(+)]; chromosome CDS433166 2163 + 0.443828
mutL DNA mismatch repair protein MutLRecName: Full=DNA mismatch repair protein MutL; chromosome CDS1113601 1278 + 0.437402
mutS1 DNA mismatch repair protein MutSRecName: Full=DNA mismatch repair protein MutS; chromosome CDS200713 2580 + 0.443023
mutS2 DNA mismatch repair protein MutSRecName: Full=Endonuclease MutS2; EC=3.1.-.-; chromosome CDS875699 2289 - 0.436435
mutY1 endonuclease IIIRecName: Full=Endonuclease III; EC=4.2.99.18; AltName: Full=DNA-(apurinic or apyrimidinic site) lyase; chromosome CDS183890 642 + 0.422118
mutY2 endonuclease IIIRecName: Full=Endonuclease III; EC=4.2.99.18; chromosome CDS105912 663 - 0.374057
mutY3 endonuclease IIIRecName: Full=Endonuclease III; EC=4.2.99.18; AltName: Full=DNA-(apurinic or apyrimidinic site) lyase; chromosome CDS333390 699 + 0.420601
nfo deoxyribonuclease IVRecName: Full=Probable endonuclease 4; EC=3.1.21.2; AltName: Full=Endodeoxyribonuclease IV; AltName: Full=Endonuclease IV; chromosome CDS1142009 849 - 0.424028
npr neutral proteaseSubName: Full=Neutral protease; chromosome CDS1040657 1749 - 0.399085
nrdF ribonucleotide reductase beta chainRecName: Full=Ribonucleoside-diphosphate reductase subunit beta; EC=1.17.4.1; AltName: Full=Ribonucleotide reductase small subunit; Contains: RecName: Full=Aae NrdB intein; AltName: Full=Aae RIR2 intein; chromosome CDS1070796 2091 - 0.423242
nucI thermococcal nuclease homologSubName: Full=Thermococcal nuclease homolog; chromosome CDS486617 519 - 0.423892
ogt O-6-methylguanine-DNA-alkyltransferaseSubName: Full=O-6-methylguanine-DNA-alkyltransferase; chromosome CDS1064073 606 - 0.349835
pol DNA polymerase I 3'-5' exo domainRecName: Full=5-3 exonuclease; EC=3.1.11.-; chromosome CDS1141158 870 + 0.391954
polA DNA polymerase I (PolI)RecName: Full=DNA polymerase I; Short=POL I; EC=2.7.7.7; chromosome CDS1384011 1725 + 0.445797
radC DNA repair protein RadCRecName: Full=UPF0758 protein aq_1610; chromosome CDS1131408 696 - 0.445402
recA recombination protein RecARecName: Full=Protein RecA; AltName: Full=Recombinase A; chromosome CDS1515870 1038 + 0.44027
recG ATP-dependent DNA helicase RecGRecName: Full=ATP-dependent DNA helicase RecG; EC=3.6.4.12; chromosome CDS1442417 2379 - 0.430853
recJ single-strand-DNA-specific exonuclease RecJSubName: Full=Single-strand-DNA-specific exonuclease RecJ; chromosome CDS1519140 1617 + 0.431664
recN recombination protein RecNRecName: Full=DNA repair protein RecN; AltName: Full=Recombination protein N; chromosome CDS381742 1563 - 0.415867
recR recombination protein RecRRecName: Full=Recombination protein RecR; chromosome CDS1054026 636 - 0.444969
rep ATP-dependent DNA helicase REPSubName: Full=ATP-dependent DNA helicase REP; chromosome CDS547898 2010 - 0.433333
rnhB RNase HIIRecName: Full=Ribonuclease HII; Short=RNase HII; EC=3.1.26.4; chromosome CDS1374521 591 + 0.445008
rpsS ribosomal protein S19RecName: Full=30S ribosomal protein S19; chromosome CDS6340 561 + 0.45098
sbcD ATP-dependent dsDNA exonucleaseSubName: Full=ATP-dependent dsDNA exonuclease; chromosome CDS1327901 1140 + 0.436842
ssb single stranded DNA-binding proteinRecName: Full=Single-stranded DNA-binding protein; Short=SSB; chromosome CDS40735 444 + 0.432432
stpK ser/thr protein kinaseSubName: Full=Ser/thr protein kinase; chromosome CDS392044 816 - 0.447304
topA topoisomerase IRecName: Full=DNA topoisomerase 1; EC=5.99.1.2; AltName: Full=DNA topoisomerase I; AltName: Full=Omega-protein; AltName: Full=Relaxing enzyme; AltName: Full=Swivelase; AltName: Full=Untwisting enzyme; chromosome CDS448782 1623 + 0.436845
topG1 reverse gyraseRecName: Full=Reverse gyrase 2; Includes: RecName: Full=Helicase; EC=3.6.4.12; Includes: RecName: Full=Topoisomerase; EC=5.99.1.3; chromosome CDS814948 3534 + 0.447368
topG2 reverse gyraseRecName: Full=Reverse gyrase 1; Includes: RecName: Full=Helicase; EC=3.6.4.12; Includes: RecName: Full=Topoisomerase; EC=5.99.1.3; chromosome CDS610406 3441 - 0.456553
uvrA repair excision nuclease subunit ARecName: Full=UvrABC system protein A; Short=UvrA protein; AltName: Full=Excinuclease ABC subunit A; chromosome CDS465627 2781 + 0.480403
uvrB repair excision nuclease subunit BRecName: Full=UvrABC system protein B; Short=Protein UvrB; AltName: Full=Excinuclease ABC subunit B; chromosome CDS1305589 1992 + 0.443775
uvrC repair excision nuclease subunit CRecName: Full=UvrABC system protein C; Short=Protein UvrC; AltName: Full=Excinuclease ABC subunit C; chromosome CDS1497725 1701 + 0.43739