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# Pseudoalteromonas haloplanktis TAC125, TAC125

>PSHAa1993 conserved protein of unknown function
MHSPAFDKLRQQVATLKQQAEQFDKAKLFSKNRYMQAQPSLFDRAVFSTK
SMNLADYVAEIEDEVSSLPPSEHRHAYTYALERIATQVQAVFNVIKSTPI
WIKENKSHYKPRPKQAVYKQAVQQVIQSSHELYDELKQNHEFERRLLLMI
EERKMQMDKATPAKAQKLNLEILTTHARLGRCRKAISATEEKIQRVEKQQ
LR
>PSHAa2110 putative phage integrase
MLLKTQKIKPPPGVVIRYNSKGEATSFQLTFTYKSVLCREKVPFIPNKQG
LKSAGFFLGQIKNEIAHDTFDYAKHFPKSNKVKLFTTTPNDAKVLDYMNL
YIERGIERGLEKSTIAGYKKAKNGLKPLWDCNISEVESIDVVKLIEKSTV
SRKTLSNRISFLRCCLARAVIDKLIKSNPVQNIRIGEYLPKINNIDSRGA
HKDVYPFTPLEKAKIINGSSGTTRAIVSLVFNTGIRSSEWVALKKADVCL
KTKQVSIYEAIVDGIVKATKTKAGRRKIPISEDVCDLLAIEMKKHDSEYL
FLNSQQRVWDQDSFRKNRWIKLLDSCGVKYRYPYQMRHTFASQLISEGVN
HWKVSKLMGHSSPNTLYQHYGSFIDEYEREHNA
>PSHAa0415 conserved protein of unknown function ; putative transposase
MQNINQQVNNQLSNLKLSGIRDALLQQYEQPNLYVEQSFEERLSLLLEHE
ITQRDQRKVDRLTRQAKFRVGGTLAQLNYGAARQLDKAQIRSLAQGEWLR
LHQTS
>PSHAa0707 conserved protein of unknown function
MFRLVIPCLVLVLSACTTSHVADDVELRATTTVALLPLVNHAQTPLAGER
AEDILASIWQQNKLPTLIRAPRTNNKELPPLDDQYRVNNAMQWLSTQQAD
YIISGSIEEWRYKAGLDGEPVVALTLSLTASGQTTPLWTGTIAKSGWGRD
SIAAVAQDVIADLLSYIEVSE
>PSHAa0402 putative orphan protein ; putative ISSod2, transposase OrfA (partial)
MKKAHFTDSQILAILKQAKSGVPIPELCREHGMGNSTFYKWRAKCVFNDA
HGRA
>PSHAa0411 putative orphan protein ; putative insertion sequence
MDNFTASLPLMLKQLKLSTMLQQWNTLGKKAIEEQWSPQQYLSDLCHIEL
ATRDDKRLQRLLKDAKLPVGKHLSSFDFTLVDGVSKPLVADLINQPDWLK
HGKRLSKCV
>PSHAa1201 putative DnaX, DNA polymerase III, gamma/tau subunits
MSYQVLARKWRPQTFHELVGQSHVKQALVNALTQNRLHHAYLFTGTRGVG
KTTIARIFAKSLNCDEGISANPCGQCSSCKDIEAGRYIDLLEIDAASRTK
VEDTREILDNVQYAPTRGRYKVYLIDEVHMLSKHSFNALLKTLEEPPEHV
KFLLATTDPQKLPVTILSRCLQFNLNALSQSEIKTQLEHVLTHEKLNFDD
DALRIIAKAADGSMRDALSLTDQAIAQTNGDINNQAVQTMLGLMDTHYSQ
SLLAALLAQDGAALMKEVANVASRNPNYVALLDDLIALTHLTQLSQLVPE
AAALDETNADYITHVAQNTNPQQIQIYYQLLLNGKKDLQWAPEPRLGFEM
IMLRLLAFQPIDTQSQQPVAVNTQPVQSNTTKASALRDILNKSKPLPSTA
QNNDTTQPQIIEPKPADVAKLSEPQNVAPDPLNNNSSTTQHVSTTVPAVE
QAVEPTIVSAVPNEAASEQLVTQQHQHTNDVTDEQAQRQSEDEAYLQQSN
LEHSLAAQFDDVISSAVDQGFNPATNTAAQAQQSQATSISEQEARAQSAI
ARILRDRNISGAGKLSNAKETEQQNTANLSSANTRPSRFTANSSNSNEQN
VTTNSDAINHSRANNNAQQTHADNPPPWPNDFAGESEKKPQLPLAGSQNK
AASQAQFESKPERKIDFKAKHQTITENLAPELLEQINPQKVPEVVVAQPS
IPAPDDFQSPISEIRFAHQQDEWAYLIKRMGLGGRMRQFALHSIFTKQGN
NLHIDVDESQKHLDTPMLRQRLDAALSSIYEHNVTLSINFAKGVIDSPYL
IQQKIDAGRHQQAIDVITSDDNIVQFQQLFSAEIDENSIQAL
>PSHAa1244 conserved protein of unknown function
MKNIFIVAALAFLTACTQTADWDYDKSANFANYKTFAWVENADLTKDTNN
YQINALMEKRVRSAISSELNQKMGMSLADPAQADVLVNYHASVDKELDVS
SFNIGYGARWSSWGLGYQNDISAREYEVGTLVIDIIDRESNQLVWRGAED
GRLKKNQSPEQRELSVRKTVAKILNNFPPQK
>PSHAa2113 putative orphan protein
MSVFSFNQQTGYLSLLKHPIDSGFIATTTQLITLIEQSQYCDFEIIAVNI
SKLFAQSKNYQSESLIVAHAINAAITINIDDKNMVAEATIKTAKGGVLLS
MQDAQKALFDAGISKGISPQALDNFLGQQFEHPAGSEYSAIIAHGRNPKK
GLDAKFVRLCSTAQDRVLSPQAKEGGKVDMKNLGAIITVKPGTPLMQRVA
ATLGEDGYTVFGDIILAKPGKEHQLQPFEGTKIDPNNPNILIADCKGVPV
ALPRGMRVDDVLCFDNVDVSTGHINFTGSVIISGDIKDGMHVKANGDITV
LGFVESGTIHSKGAVTIMLGAIGRKREVDEAFSCHIIAQRTICVGYAQYC
HIETAQDLFIERQALHCDLRAKRLIRVGKANNPRGKIIGGNILDALRLET
GELGAPAGTKTKVFLAQHWFELREKQTEIFDFEKLLADKSAVLKNARIKA
NKIPAPAQRQLYLDKIKLNEQHIQTRTAQLQRQKQLIKHKIMQLLATSHL
KVNDLMHPGVELKIAKDTKQFSRIYPPHLVKLSEGKITQTF
>PSHAa2220 conserved protein of unknown function
MAIARKRQVSLVDTKYYHCISRCVRRAFLCGVDNFTNQSYEHRREWVESK
LLALANVFCIDVCAYAVMSNHTHLVLYVDDKKAKRLTDKAIIQRWHRLCK
GTVLTNKYLQGEELSKIEWLFLNETISEYRERLANISWFMRLLNEDIARR
ANKEDNCTGRFWEGRFKSQALLDEAALIACMAYVDLNPIRAKAAATPETS
DHTSVKIRIESATAGKQPKQLLRFSGKPKKQMAKGLPFELKSYLELVELT
GRCIREGKAGYIESSTLPLLQRVNITPENWLKLTTQFSRVFHGAVGRPAS
HEGYCEHLNRKRRANVSNCEKLLA
>PSHAa1800 putative metallo-dependent hydrolase
MIVDSHCHLDRLDFDKLDLNLDQVLDKARAKKVEHFLCVSVTLDQFPNML
DKIKHYDDVSASCGVHPLDQKDALNKQQLIDLASHDKVVAIGETGLDYYY
AKDTHAVQQASFVGHIEVANQLQKPLIIHTRDARSDTINLMKQHNAENCG
GVLHCFTEDWDMAKKAIDMGFYISISGIVTFKNAVELKEVVKQIPLDRLL
IETDSPYLAPVPYRGKTNQPAYVEDVAYYISELKGISFNELAKATTENFY
SLFKLAAKG
>PSHAb0050 conserved protein of unknown function
MAIARKRQVSLVDTKYYHCISRCVRRAFLCGVDNFTNQSYEHRRGWVESK
LLALANVFCIDVCAYAVMSNHTHLVLYVDDKKAKRLTDKAIIQRWHRLCK
GTVLTNKYLQGEELSKIEWLFLNETISEYRERLANISWFMRLLNEDIARR
ANKEDNCTGRFWEGRFKSQALLDEAALIACMAYVDLNPIRAKAAATPETS
EHTSVKIRIESATAGNKQPKQLLRFSGKFKKHMAKGLPFALKSYLELVEL
TGRCIREGKAGYIESSTLPLLQRVNITPENWLKLTTQFSRVFHGAVGRPA
SHEGYCEHLNRKRRTNVSNCEKLLA
>PSHAa0589 putative DNA polymerase, exonuclease activity
MVKRLITRYFKRRQLLAHAALKQRYLVIDLELTGLDAKQHEIVSLAWVVI
ENQCIKMSQSQHLINKEVKNLAQSPVYHGINNDNVAAGQSLHSILEHLSE
HFNDCILVFHNAMLDWGFLKPALKNANITTRPKLILCTLQIEKKRLQHQG
VEIKQDDLTLNECRNRYELPSYHCHHALTDAQATAELFLAQCHQISSGRG
LKVRELV
>PSHAa1485 putative Serine/threonine protein kinase
MQAKEIRNFYINEEQSVYLLSHHDAKKHRQWLNICIKKLTLLGYENVEMI
GSGAFGFVFAGHDDTGLPWVFKFSRITLAQSIRDRLEDEAYMLSQINNPL
VPEFYAFERIKKQGILMMARAMGEDLEKVSLKKGRIGAAKIMMLAVRLRN
VLLDLRNHNTGITAQPIVHGDIKPSNLVWDEASDALSLVDWGSSVYAQID
SDGNPIASNFMDLMSADLSTTNARMGDVYFIGEAQMSGEQSSPRFDEQGV
AATLYALASAQSCRFGVDVIPASSLGLPIELAKVIDGMLSKNKQVRDSAG
DYFMRNITSMAKAYLPELPKKVVKAAIPFWFSYDEEPETVVYSSRKQFLR
QADHKQQLLDVNDAQLDRYYKEFLFDTGDTEKAFLASISRLAKYPAVGGL
SFHWKDESLFVESSLILYNETLAAAFTDAVNNTVMLAQAISQKGLFKCCL
FDARKTIQLERDRTGAFKFESLPELDFETVNVNASDVTRPHSYFEDGKDP
DEQLQLPKKVIKCVFELNQIHHTGCIIFEALPDRLKIHHYYRLLDASKED
EFRRLLNKLMQYAVNITDVGVAGFMKLPYKNTREFSLCEQQGNHYYPKNP
KVTL
>PSHAa1276 conserved protein of unknown function
MSYDGFYDRLKVVNKGDFQYARVNFYISDIGTNEACAIKSGTILTENNEY
PLNYTEQAQLLLPFDKQLDTDKAVIVVQPQNPVHDCQLKLQIEANELEGL
SFTKQSLFTIHTELDELLADLSGFFVSKLMWFLLPEQKGVVVTFKKPMHF
DDESIECKKSVCYFAVADNWQDDTKELADIADVIKVTPWITK
>PSHAa2360 putative phage integrase family
MNYILWTVPSLTIDQKLSKSVNLDTGEISFNFNGKGHDVQDIVLLYQDNG
LPVSVVNNWLIYLKTSQYRKHVNTQAQALLHYFIFLDEIGLEWDEMPITS
RNKPTYKFSKHLKDSVMNGAIARTTANNYLGSIVSFYKFYLNKGYEFINK
PFNYKKIKVNVDGGHEFSRGKFVFVDSTDIRLNLPKDKSNFGMPRELVPL
SEHEWTLVDKICRQGKVNLNSSKGAAFVNLSEEFKLAVALARHTGLRREE
IVTFRSKFIYKPTAEQLHHKYLVHSNGVHISPQEGVETKGSGSRTIEMPS
LLMLQLHRYINSKRYIKRRKLFEVNNSDELNNPPLFISQNGHHYASRTFN
ARWCEVRNTVKNSHPSFNHKFHNLRSTYAVARLKELLNQGIKEGDALDYI
QSVMGHKSRSTLLHYLKFCHQTLKANEVYEQALELVLKGEE
>PSHAa0582 putative transposase (IS605)
MKKTLRYNYRLNPTPEQEAKLVEFGATARGIWNLLLSENMRRYEHDKTFL
FYKDMASLLKDIKTFEEFNWIKAFDSAAAQQVARDLELALKNAFTKGRLQ
RFPKHKISYKKKKLHNDSFRAVNNSNCIRIENGAISIPKVGKIPIILHRK
LASKIKTVTIQYHHGKWGCSITQEVECKTAKQVLKTITGFDINSKQTVVG
SDGFVVDNPKFLKQSKTKLNQLQRQLARRTKGSNRWQKTKQRINKLHGKI
SRQRLDFAHKISRQITNENDILVFEDLNVKGMQKFNGSMVADNVMGLITQ
LSKYKTELEGKLYHEIGRFEKSTGVCSECGQHHVLTLNDRYFTCTACETY
QSRDLSAAKSIAKTGELDLIAAGIVARVTPTSQQKSAIKTKVFELSKFAV
GTEKKEAA
>PSHAa1883 conserved protein of unknown function
MAIARKRQVSLVDTKYYHCISRCVRRAFLCGVDNFTNQSYEHRRGWVESK
LLALANVFCIDVCAYAVMSNHTHLVLYVDDKKAKRLTDKAIIQRWHRLCK
GTVLTNKYLQGQELSKIEWLFLNETISEYRERLANISWFMRLLNEDIARR
ANKEDNCTGRFWEGRFKSQALLDEAALIACMAYVDLNPIRAKAAATPETS
EHTSVKIRIESATAGKQPKQLLRFSGKPKKQMAKGLPFELKSYLELVELT
GRCIREGKAGYIESSTLPLLQRVNITPENWLKLTTQFSRVFHGAVGRPAS
HGGYCEHLNRKRRANVSNCEKLLA
>PSHAa0414 conserved protein of unknown function ; putative transposase
MASSSPNILITGATGCGKTYLACALGQNHCQQGSSVYYFRFKELLEKMFL
AQADGGYRKLINKLSSANLLILDDWGLEPLTAQQRSDLLELIDARYDTKS
TLIASQLPIENWYEMIGESTHADAILDRLVHGAIKLELKGESMRKKLNFL
TDADHSS
>PSHAa2057 conserved protein of unknown function
MAIARKRQVSLVDTKYYHCISRCVRRAFLCGVDNFTNQSYEHRRGWVESK
LLALANVFCIDVCAYAVMSNHTHLVLYVDDKKAKRLTDKAIIQRWHRLCK
GTVLTNKYLQGEELSKIEWLFLNETISEYRERLANISWFMRLLNEDIARR
ANKEDNCTGRFWEGRFKSQALLDEAALIACMAYVDLNPIRAKAAATPETS
EHTSVKIRIESATAGKQPKQLLRFSGKPKKHMAKGLPFELKSYLELVELT
GRCIREGKAGYIESSTLPLLQRVNITPENWLKLTTQFSRVFHGAVGRPAS
HEGYCEHLNRKRRTNVSNCEKLLA
>PSHAb0040 putative uracil-DNA glycosylase family protein
MSEKQSKKIELNELVAQVSKCVICEPQLPLGARPVIQFNPNARILIAGQA
PGIKVHQSGIPFNDQSGERLRQWLGLTNDQFYDANNIAILPMGFCYPGKG
KSGDLPPRKECAPAWRAQLLAALPNLQLTIVLGKYAQAYHLPDTKKLPLT
ELVKSWRDYWPSHLVLPHPSPRNNIWLKKNPWFEQEVLPELKKRVAEVLL
>PSHAa0677 conserved protein of unknown function
MLTFFLKKKPTKSTFILLAFISVLGCQTTKPQKQPTARCEIEVAGERSEE
LSKKVKSLVGEDITQIESSYSSPPNKDRPLSSRALIVANIYHYSVYGNLS
KMSIEALNGKKQMLIEARSEIEKLKTNYEETLLHSQSGDCIFGYPSAYKK
AEKHVDFLSRVIEYSIPALSALVDVAITNKRKEIEEEKHRVTALKKQEDY
DKYRANQYRIYKGAIYKDEGVIIQLEDFDGMRIIFSVKNLSKRKIIKLDM
KYSHSYENELGGVSWYQSPKMSLRDGYGNKLRILNPHNSHDSSDREDKLM
PSEKKTFAVYVDDKIIKDSSLELYFPVYSVGQSEAFTIKFPSHITPLYF
>PSHAa0353 putative enzyme with N-6 Adenine-specific DNA methylase domain
MRKKTTQNKVTSKSSDGFIRVISGQFRGRKLPVKDVQGLRPTTDRIKETV
FNWLMQDTREANVLDCFAGSGGLGFEALSRFAKSATFVELDAAAAKQIEL
NISTLKLQNAHVKHTNTLAFLEQINSNEPFNLVFVDPPFRKNLAQSSADL
LENNQWLSSDALIYIEVESELSTFTAPINWLLIKEKKAGQVFCRLYQRQV
N
>PSHAa1465 putative mini-circle transposase for IS117
MKAYNVDNFAVLIGIDWADKKHDICEHPTGTNKYHYTVIKHTPEALHEWA
MDIKQRYPEQKIAIVCELKKGPLIYALAKYDHLTLFTVNPCAVAKYRQAF
TPSGAKDDPSDAFVQVEILTLHMNKLSVIEPEPAAMRTLSQLVEYRRSLV
QDSVDLSNKITATLKNYYPQALEWFKEKDTYIFCDFIQKWPSLTAVKKAR
KQTLLDFFESHNSHYCTVNNARLDSIKNSMPLTLDEGVIVPNQMLVEVLI
MQFKVLLKGIEKLDKAIKSAYKAQQDKKIFDSLPGAGPQLAPRLLVAFGS
NRARYNDAAELQKYAGIAPVIERSGQKMWTHWRYSCPTFLRQTFVEWAGF
SIRYSFWAKAYYEQQKAKGKPHNSIIRSLAFKWIRIVFRCWKTNKPYDES
TYLAALKRRGSPLLKFAINS
>PSHAa0418 conserved protein of unknown function
MFIPKEDGSERGLSIICLEDKIVQQAMVQVLNQIYETDFLGISYGFRPE
>PSHAa2471 putative orphan protein
MSRPLRIEYENAFYHVMNRGRGRENTFLSDDDFKYFLYCIEQASLRFNIE
VHSYCLMTNHYHLLIKTPDANLGRAMKHINGLYTQYFNRAHNTDGALFRG
RYKAVLVDADNYLLHVSRYIHRNPIETSTPLVDVLIDYKWSSYSAFIKKT
ATPKWLVRDFIFSLQGKNRKYAAYKQFVEYENNKEVSTFYGAKKLLSVLG
CDAFIEKIKGYIAIPDSERSIVIKKRSTDDVIDYLAKYFCIDTHDIVTVK
KGRKEKNLPRMFAIKLCQDLTGQNLKALAVIFNVQHYSAISQTVCRLNKL
IIEDDKVKLQFEKLRDSLMCEVKI
>PSHAa0659 putative hydrolase with metallo-dependent hydrolase domain
MQFIDSHCHLDFTEFDSNRESLISECVAKGVEQFVVPGISLAQSRALLEF
KINFAGVKIAAGLHPYFLNQHQESHIELLFTFATANKNQLVAIGECGLDR
SIENLSKQTFLFEQQIALANQLGLPLIVHHRQSHDLIAQSFKRCKPKYGG
VIHAFSGSLQQAQYYIKQGFKLGVGGVISYPRAVKTRDVIANINTSHLVL
ETDSPSMPLCGYQGEINTPLQIVRVFDVLCELKPKQHKEQLATELYDSCC
DVFCI
>PSHAa1435 putative DNA polymerase III, epsilon subunit
MSKQKQAIVDWSLRYQQLANSSENALLQQFYASAFNQPAAAIADVPFVAM
DFETTGLDSEADDIVSVGLVPFNLQRIYCKHSRHWVVQPRRNLHEESIII
HGITHSEVDDAPDFNRIIEPLLAALSGKVVVVHYAAIERPFLNNALLLRL
HEGIEFALVDTMDIEKRALTARQGLIGRLFNSKIGSLRLNDCRKRYSLPA
YNNHNALTDALATAELLQAQLSHHYRLDTPIDDLWI
>PSHAa0845 conserved protein of unknown function
MTTDNQKSLKCSEQSCLKKPSIWYLYIVQTRYGHWYTGITTNVEQRLATH
QAGNGAKNLKGKGPLLLIHQHSVGNKSAASKLEYQVKKLSRAKKEAYVAS
FKTG
>PSHAb0441 conserved protein of unknown function
MEIDKETLIYTVIGSIPKGQVASYGQVAAIAGYPQNARLVGRLLKLMPND
STIPWHRVVNSQGKISFPIGSNKYQEQRQKLLLEGIAFKNERVNMRVYQW
Q
>PSHAa0407 putative orphan protein ; putative insertion sequence ATP-binding protein
MSDAICRTFTKHGGNILLFGASGLGKTHIASSIGYGLIEQGHKVKFVAAS
AIVQQLQQAKRHLRLQDELVKLDKYSLLIVDDVGYVRKTEQETSVLFELI
AHRYERHSMIITSNKSFEQWDELFEDSTMTVAAIDRLVHHATIIHCEGDS
YRRKTALNKSK
>PSHAa0403 putative orphan protein
MYQSLSYVVNMVWVTQPFINGALNASLMTRMEELEDENRRLKKMYAEERL
KSEVIQEAMAKKW
>PSHAb0554 putative site-specific tyrosine integrase/recombinase; may be used for the termination of replication of chromosome 2
MLVALVDTLKQLRYQIAHLEDNTLNSEYPELATFIQQVGLTVTESKQDLT
FLYQFLYVYGRKSEATYSRFRSELERFYLWAWLVAEKSVFDLKREDIEGY
VDFVVEPDKAWATTSVQWRYKDEQGIRRLNTNWRPFIQKESIASQQTLSA
MFTALNVFYKFAILEEKTFANFVPVVKKNSPYLVVQSQIQIPDTLSDIQW
EYVFGVTRDLCEQQPDLERNLFTLACLKGLYLRISELSERPQWSPVMSHF
WQDNDGFWFLRIMGKGNKLRDVTLSDDFVEYLKRYRLYRGLPALPRVDES
EPLVHKIRGQGGMTVRQIRRLVQQSFDLAQQSLLDDGFKDDSEQLEAATA
HWLRHTGATHDAQTRPLKHLSEDLGHAKIATTDQIYIQTNIKERAKSGLK
RKI
>PSHAa2200 putative deoxyribodipyrimidine photolyase
MKINIVWFKRDLRLSDHQPLKNAFSNGLPTLLLYNFEPLMLEDTHYNERH
WRFVYQSIVELNNQLTRFNACVYIFNLNMGDLLESLKTQFEIVNIFSHQE
IGLNNTFERDKAIKVWCQHNHINWQESQTGAVIRGKKNRNNWNERWQQTM
QAPIAVPNWKSIKTITLNNYQAPELPSAYTQNHDSFQQGGPLQARTVLQS
FFAERGKGYQKGISSPSLSQVHCSRLSPYLAWGNISLRQVYQMAFDEYHS
KHPDKRGWKRPLAAFVSRLHWHCHFMQKFESECSMEFLALNPGYHVFPYR
DDEHVKSDIERWVQGQTGIPIIDACMRCLKATGYINFRMRAMLVSFVTHH
LNISWQQASFPLANYFLDFEPGIHYPQIQMQASVTGINTIRHYNPIKQSE
DQDPTGSFIKKWCPELEKLPIEYLHQPWQQTPMEALFNDFKLGEDYPEPM
LDLTAASKAARERLWQYRERADVKRAIGSILKKHVAITPKTSQVKNKTTN
DGS
>PSHAa0409 putative orphan protein ; putative transposase (IS66 family element,Orf2-like)
MKMFVEPSEVFLHRDFVDFRKSINGLVSIVEDELVRDAYTGTLFVFCNKA
KDKLKILYWDKTGFALWYKRLEKQKFKWPSKLSSQEFELTYQQLSWLLSG
YDVLGHEPLHYQSPI
>PSHAa0408 putative orphan protein ; putative transposase
MRIMRSPEQWRTIIHEQQSSGLTIIDYCRQHQLSMTSFYAVRKKLGLSSN
NFVRAKITQQVEIVDEQSSITLTVGKANVSLPATTSATYLSQLLREFVQ
>PSHAa1897 conserved protein of unknown function
MAIIRCPKCAKSISDKHAQCPHCESNVADLNNEQVQQLQREQRIKKQQMF
ITHSFLALILFLGGFFCLYFLQPQEKTPQWYAYTIAIGVGCIWYLINRII
LVTLKKKK
>PSHAa1474 conserved protein of unknown function
MTRARKSLIDLSATPYYHLIARCVRRAFLCGDDKYSGKNFDHRREWLVKR
MKLLSDVFAIDIAAYAIMSNHYHVVVKVNKNKALDWSVEEVIRRWYKLYK
QGDSLVERFLNGEKLNEASLYIFSEIIATWRARLYDISWYMKNLNEYIAR
QANKEDNCTGKYWEGRYKSQALLDDKAILSCMAYVDLNPIRAKIATELEN
SDFTSIQERIHKYKNTPKNSKQPAQKSELFEHKSQPMQLLKLGSNAEPDT
IPFRLIDYLELVSWSSRYFTCNKQREVSKNVPNILAKLNIEEAEWLNAIQ
HFRRQYANFAGSKVRLMNLAAQNQAKWYKGVG
>PSHAa0676 putative transposase (IS492)
MNTLNNQNEINVGVDTGKTQLDIYIRPLDIYFTVENNDGGIKHAIKTLKK
HPITRVTIEATGRLEHPFIMVCAQANIPFVVANPVNIKRFAGAIGQKAKT
DKLDAQLIAHFGEAIKPPLSCLKPEQMRLMSDLLSRRRQLMDMQTMEKNR
SQIMPKTISSLIKPILTALKNQIEKVDLKLQKLIKECGEYKVKNDIIQSV
PGVGNVVAFNLLSDMPELRCVNNKEAASLVGVAPFNRESGAYHGKRMIRG
GRPKIRTAMYMAMMSAIQCNPKFKAIYHRLVAAGKPKKVAIIACIRKLIV
IINSMVRDGVMWDPTMV
>PSHAa0421 conserved protein of unknown function ; putative phage integrase
MAHIRIRPNGRIQFDLHIYGQRFREGTKLMATPVNIKKANATLKKINAEI
DLDTFQYRDYFPESKKVAKFEALQRAKDPDRLYPFFNDYANEWFDRQKAK
WKSSYQSVVRNTLDRYLIPEFGNILVNEIKLANVDYFRESLMVCDTKGAR
KLSNKRINGILWPFVAILSLAAEEHEFTYPLRRYKTLKEERANSLPLTAD
EVQRFLECTPTQWRDYFTVRFWTGMRSCEIHGLRWEDIDFNHRLIRIRHN
WVNGELGDVKTPKSRRDLKMCNTLFSLFKRLQKQTTSEFVFTHKGKPLDT
HFVSTQLWYPTLNKAGLARRRPYETRHTAAVLHIAAHENPLYISHMLGHS
DTRLLFDVYAPYVANASRQDGFAFNEMMIERGIA
>PSHAa2177 putative DNA ligase, ATP-dependent
MFYIKLITLITAVLFSSIVNATLPKVLLAKVYDETKHSDVSNYLVSEKFD
GVRAIWTGKQFVTRQGNVINAPEWFTAPLPKVWLDGELWTKHQHFAVLSG
IVRTKTPNNHDWQSITYQVFDMPDANVPFSQRYSNYSHLVAGLNSPHIKA
IKQHQFTNNQLLTNYFKNITAQGGEGVMLHLASAKHADGRSDALLKLKPY
LDAEAIVIAYLPGKGKYQGMLGALRVKTAQGQLFSIGTGFSDAERESPPA
LGSTITYRFHGLTKNGLPRFASFLRVRESL
>PSHAb0094 putative orphan protein
MNERSDIEFPVWRKKVDNSFLNEKVTPIPKWLWSVWEIEETFNNVNTTKD
HASEVDIIFAGETYKGNVFFSSRASGKMCRFSFEQKLHSILKEQFLMSYM
RSLEGKIRKAVGSKSDIEKEIPFWEFLDIEFNAESKLFKFICHYNQQPIF
PELFKQLVSSPAIKAVDDFMNKKEANRIYKQNWKPRSEYKNEVGAENVIY
TLIDTENKLIYIGEAKKLIARFDSNSHTVIPKWNFYKYNVLPKSLEDYRL
TLERMAIRDMANFLENEADIPKIEISAYKLVNRKIDK
>PSHAa0027 putative DNA topoisomerase; C4 zinc finger domain protein
MSKIDHSLFSANKHALEKEYEICPQCGSELVIRNSKSGPFLGCASYPKCD
FIRPLAHHDSSEIKVLEDSACPQCSKQLVVKNGRYGMFIGCTGYPECHYI
ANENEAKQNEEPLPSCPKCKKGRLVSRSNKFGKIFYSCDCYPSCKYTLNN
KPVEQSCPECNWPLLIERKMANSTVLQCPQKSCMHKLAATE
>PSHAa1585 conserved protein of unknown function
MCGDDKYTGKNFDHRREWLVERIKLLSSVFAIEIAAYAIMSNHYHLVVNV
NRKQALDWANSEVIERWYRLYNGHALVDSYLKGEQLDNASLVCFNEIIAK
WRERLYDISWYMKNLNEYIAREANKEDSCTGKYWEGRYKSQALLDETALL
SCMAYVDLNPIRANMAGTLEDSDFTSIQERIAQLTAFTKNTVQTNNPSKQ
KDSVQDQSQPSQLKPFCANNIKHTIPFALLDYLELVDWSGRQISPNKKGY
INKAIPKVLVTLNIEEAQWLESIQRFRHKYSNFAGSKQRLKQQAANNDVK
WYKGAG
>PSHAb0076 conserved protein of unknown function ; putative transposase DNA-binding domain
MFILEPLNEGRALLTFYEKASKKPARMFSIKLDYEPDQLAKQFRISRQGR
RFYLSGSYNDGVESATNEELLKGFVAQSLSDDELLSQITGIDRGVKLPIA
TSDGLRKAYSPETTERLKRLVQKKARYQRILARKKRQNNNKNTRRVESNE
QQKLADKIANFDAKTARIRHDFLHQTSKEVVLSAKSIIALEDLKLKNMTK
RAKPKRGKHGRGYARNNANAKSSLNRSLLNVALGKLGDFIKYKANDYGKA
VVEVSPAGTSQTCHMCGEKNTIRPQQDTLICLNGCGTFHADDNASIVVAQ
RAVPYIQESTFAQKAKTRKKTAVRKKAVTPPLGSELASTEKSGELETAST
DVSLVCSRTQADVRPSSTASLVQRNSLTTMDASVTGVLETR
>PSHAa1262 putative orphan protein
MTTITFKNQYSNYNSSSVNKAASPSEVAATNPPIDEKAGDVKGINSAPKE
QSFLEKAQEALVYQRLGVNKDKIDELKAAIEELTKELQAQGADLDVIADK
INELEKMLEQEYQQGRDRMDMKPQHEPGKIIFALI
>PSHAa2399 putative nudix hydrolase family protein
MRPLKTLIHPSINIEQGSQFTRITARAIAMHKQHILLMYTKRYDDFSLPG
GGVDEHESIEQGLIRELQEETGAQNIVIKKEFGLYEEYRPWYKDDFDIIH
IKSYCYVCNIDQKLGQTQLEHYEQQNGMVAKWVDINEAIEHNERTLATSD
KQGLSIIRETYLLKEIAKQL
>PSHAa2491 putative orphan protein
MKTHLGRRPFSAMELHTLYTGYIYGDMRVVREQAKHWHFWLPLIAYYTGA
YSDEIGCLTLDDLTVEQNILCFSFHTHGKIKPRLIPVHQALINAGFNDYL
AFIKSQNQQRLMFDLPAKTGRYSEKVRIWFSGEGERAGYLQKCAIPNIDQ
LGMKTAISSLRLNFEQQVRIYALQANSKDAFNYLMGFNEYPHPNYSNVAV
LNSIIGQIRVINSQLHWQRFINRDSH
>PSHAa1247 conserved protein of unknown function
MIPAKKLLNTLSEHWGVLELLFKRFKMADFSIKDLQNAIKQKQPTWHNER
IYKETNRLLNQDIIIPLAKSSQLEINRAIADFATFLLQEEHLGLAQEISV
LVEDLARLGDRLANAGEVEDFDDLRRFSRIMDDRVRKIMKLYAHNENAIL
NIVEQAKSNNAVQSLQKRYKAVIEAFDEYIEPMLEMVDIRGDFHACFNLI
EQQISTQIEHIEQSGKAYTDKRMLEQLRTRILEMHLIGRESLRKSADMLM
PLREELRRNNLITRQAAKVLGLVRKNGVDNMLTAVQPHFVSDAQRYSLGQ
QRHIVAYMASLVEFEHQEYQLPDQQDVPPFQTPNIPDYNDVKSSFAKRFN
TKRKKPQPLLQFLDESYPDLDAEEMLFLYQKLVSDNELEKSQSDEKARFK
IAGQYFSLYPYNSQPQTPSKADE
>PSHAa1926 putative NTP pyrophosphatase
MLHYSNMPLDRGSNFRNDPAWLKAHMSAQSKWVLVKNNQTLFIKDTPKVS
YLSYQQVAHLDLTNAIFVGLNNAKDGVFALDVSKLDTSILDPLIDGAQFV
DIRQYGPQVTIKYASIAALARGLCYWHATHSFCGRCGSKNHLVEAGHSRV
CENENCKHPTFPRTDPAVIMVVTKVFADGVERCLLGRQAAWASGMYSSLA
GFVDPGETLEQAVAREVKEEAGIEVNNVRYVASQPWPFPSSIMLGFFAEA
VTEDINVDKNELDDAKWFSREELRQFGNWHDEGDHLKLPRTDSISRYLIE
YWLNNKD
>PSHAb0291 putative ADA regulatory protein (Regulatory protein of adaptative response)
MNDKHWQKARQSRDPRFDGLFYVAVKSTGIYCRPICPAPTANEINVTYYQ
YAHNAAKAGFRPCMRCRPDSAPGSFAWQGVKTTALRAKQLIDQGAYYDCE
KLAARLGISSRYLRRLFTQHFGISITQYRLFNQCHFAKKLIQETTLPLTH
IAFAAGFNSIRRFNDAFLQQLNIAPSKLRSSDKAPSSIVNSTLNLTLPFR
PPYNWPAMQQFLAKRLIAPMEWITATSYGRTFSDEHCKGSFNAEFIAQKN
HFKVAITINNTHCLQQVITNIRRVLDLDADINLITMHIQDNINNAFAVSE
GLRLPGIWSSFEAGIRAVLGQQVSVTAAHNLVTKLVSELGEQCNGAVYFP
TPQQLVNSDFAFFKMPQARKNALYNLAQFCTLNPQCDDLDLWLNLKGIGP
WTVNYAKLRGQSQPDILLDGDLGVKKAQAAVAVFSSDNCAPFRSYLTFQL
WQQL
>PSHAa0405 putative orphan protein ; putative transposase (partial)
MRIKPRKRLNRDKPEPLAVPETINECWSMDFMHDQLADGRACRLFNVIDD
FNREGLTIDADLSLPAERVIRSLNQIIEWRGKPKAIRCDNGPEYISKQLA
QWALNNDIELRFIQPGNPQQNAYIERFNRTVRYDWLSHYIYSDISELQDR
ATDWLWTYNNERPNMGLGGITPIQKLEKLNN
>PSHAa2345 DNA topoisomerase III (C-terminal part)
MRSNREFIPLSVSALARSRADWLFGMNLTRAYTLAGQKAGFGNVLSVGRV
QTPILGLVVNRDNDIANFVSKPFYEVLAHLVTPEKQSFSAKWIPSKACEP
YQDEEGRVLNKALAENVASRITQQNAELTALEQKQKKQTAPLPYNLSALQ
IDAAKAFAMPAQKVLDICQTLYERHKLITYPRSDNRYLPNDHHQDASVIL
KAISTNGGQGVELVKAADSKKRSKCFNDSKVAAHHAIVPTAKQLKSASLG
SDETKVYQLICRHYLIQFYPDYIYNETKAEITIAGGLFKANAKQDVSLGF
KVLMGKSELKDEATLPLLTKGMLLFCSQGEVVEKYTSPPAHFSDATLLAA
MTGISRYVQDPQIKKVLKDTDGLGTEATRAGIIELLFKRRFLKREGKLIK
ATETGSALISVLPQGLVRPDLTAKWESSLGDIAQQVMSYQQFLQPLLADL
NSFVQQAANCDSNVFAKLPKTSAKKRFVKRGQKTPYKKSSYKKSSVTG
>PSHAb0026 putative transposase IS200-like
MCKDFEVDLVEFNGEQDHVHLLIEYPPKVQLSKLINSLKGVSSRLMRKEF
TEIHRNLWNGALWSPSYFAGSCCGASLDVLTAYIEQQNRAK
>PSHAa2095 putative orphan protein
MKKEEVDAHVRSVVDKLIEQMQENLGEWIAPWHNGFLEPKNAITHHLFSG
MNATLLWMSSLDNTFQSDEWATLKQWNTKKAKVKIRSKGTRLFRPIYAKK
NKPSDEDYIIYFKPYTVFNADQVNNYNPAHPDLFADDMPIDPSADKFIAR
CKANITHGNTDAFYRVYEDKIYLPFPTNFVDSSHGSKQHNYYATAIHELI
HWSGHDTRMRRNLANNSTEQYAYEELVAELGAAIICTRLENTITPRTDHA
AYLKSWIKHLKDDFHYLFKAVDDAKKAVHFLYELTGIENAEVDCEDKEFE
QLNDNEAVEPEKIILTGFVSTLKVSTCCNHCHESYSVTLTRYENLSFCEQ
CSKPNKHLIEW
>PSHAa0835 conserved protein of unknown function; putative competence protein
MKKLKYSILAAAFCMLPVTLTYANVDTSAITQQVKQAALNINTADVSQLS
KLPGIGKKKAQAIIDYREAKGNFTSLEDLKMVKGIGKKLAAKLEGKVSF
>PSHAa1461 putative integrase
MYSKRYAKSTIEAYLFWIAAYIRFNNMQHPSSMGDTQVELYLNHLVNSQN
VAQGTQAQALNALSFLYKEIIKSPLSLSLDFVKSERPRKLPIVLTQTEVS
ALFKHCITKHYLACALLYGSGMRLMEVLRLRIQDIDFDYNCVRIWDGKGG
KNRVVTLAGELIPQIRTQIQLVDNYLQLDLNNPLFCGVYMPHLLRKKYPN
HNKQLGWQYLFPSYKLSIDPESKQLRRHHIDEKQLQRAVKKAAFNAHINK
HVTPHTLRHSFATHLLQSGADIRTVQTQLGHSDIRTTQIYTHVLQQGANG
VISPFSRL
>PSHAb0224 putative Mini-circle transposase for insertion sequence (IS117)
MNTPSENFKGVCLISKFLRQKFVEWAGLSVRYSFWAKAYYRQQEAKGKPH
NTIIRSLAFKWIRILFRCWKTHTPYDESTYLIALKSKGSPLLKFAVESEL
>PSHAa2795 conserved protein of unknown function
MFKLAHNGNVLLDIGKHSPPSAAFIIEALEESNFCDCKIDYDSINNFFKS
KNPEPILVVATKHDAILSVTISDDKMLAIGELTLAQGGNVLSLDDAKMQL
VKARVARGYKQAFLEKLLQKQFEMPAGSSTKGILAKGRLPIDGQDTKFNT
LVKTLKDRLKTPKLKDDGSVDMRDFGKLASVSPGETLIRQQPATPGKEGF
NVLGDLLPAKSGEILSLVSGEGTEISKSNPLELVSTIAGVPVEINNGMRV
DDIFTISEVTVKSGHIDFNGSVIVSGNIEPGMRVKAKGDITIFGTVESAQ
LTADGNITVKQGIIGHYKPEDKSLSCTLNCKGDIYISHAQYSYLEATNIL
IERQASHCSIKAVNLLQVGQAELPKGRLFGGEVLNATTLIAGEIGNESGA
KMVINLAASGAEITADTDNCFQDLANTDKQLDTLQAALEKADLLKDIEKK
NMLIGKIGATQQHYCQQAEQLEKRLSNLENNLHDLLNNANLAVNSVLHSG
VVIHIFDKVLKTTRTYPPCSVKLQNNKIEVEFKTH
>PSHAb0096 putative ABC transporter ATP-binding protein
MIIKQLTLENFGIYQGRHEVNLSTSANKPIILFGGLNGGGKTTFLDALQL
VLYGKHAKCSNRGHQSYGNYLISTKNRYVGNDDTVEISLTFTHTTDTTTN
EFVIVRSWKTNTKDVKDKVVVYCNQQEDSHLSQYWDEFVNEFIPLSLSDL
FFFDGEKIENLAHPDRSADLIKTGIENLLGLDLLSQLQIDLNNVERKRKS
ENLDTTVVAKVEALEAEITEQTTIVTGFKTDIANLEKRASDTNLSINKAR
QKVRSAGAHLIEERDIIKFELGAIEEKLKANLAERVKLDAGCGPLGLIPN
LISSTKAQIKKEEQAVQANVIQSAITEYEATITQTLVNENVPETALSALS
NKMATLAKEREELASTECYIASNIAIFNGLDEKIANDKLERSNLLKARVE
LFEQQALFNKKLESIPDYETVQHLLSELAGLEVELKNSFVLIKQKQQLLQ
QAQARDEVLNTRYANLLTQQSKDTFEQKRSIQVADHIGKLKNTMKSFADE
LIRENVTGLEEHIAAKFFDLSRKNNLITGVKICPDSFKLTLLDNNKNPMS
PSRLSAGERQLLAIAILWGLAEASGKEIPTVIDTPLGRLDGKHRSKLINN
YFPKASSQVILLSTDEEITGQYYTQLKPAICREYHISYNEHEQTSTFTEG
YF
>PSHAa1164 conserved protein of unknown function ; putative NUDIX hydrolase domain
MNSEHIIARFQLSPTAAPDQGIDTPKKRASAVMLPLIDVDDHAHILLCKR
PIYLHHHPGEICLPGGKFEASDITLRTTALRELHEELNITPSNVKVFGQL
PLYSTLTGFNISPFVGMLNKHTIWENDHNEVQASFLLPLRDLTNEANWQP
LPFQRFGKTIILYGYNTPHGLLWGATASIIKNFTKQLALPV
>PSHAa1996 conserved protein of unknown function; putative enzyme
MLDTVFIYSHGNVMKKELPAKYYLAHFRELIEFVTSKCMHLLEPKHSEFI
NKINQLDEQSQCMLARVYSRKPYLVQAQSLTYEEIISPHQAIYTLKKAGI
LFEPNEQHYSQLLAHLTKPALLELLSNYSDQISYKKSAAKGALVDSAREF
FKSCPHELAPLYSQYVINNRSDYYEYFEFLFAGKLSSGDVNHQNRFVMRD
LGLTATREGHSESLSRFETKAEAQSNYLLNRYRLAFKNITDESDYVALAP
QVLVQAAHGAIAVTLKNKLLVQLFKQLKNTNSELAFSLLEECVDDSEAHE
IQIREQYRLGNKQWVKARLEAIIENPLTDDLLYFADDFLMRKFNKQTRSR
LSTMLADTQCVLEIDELYRGEVEQGVNDYYTGQGMQVFNTENTLWQSLFG
LVFWHELFIDTPYPPCNEFDIYPQVLRLGNFYAAQPAQINERLAQCQTPQ
ALLKLVCKNAAQYFDQPNGLFKWHNELLQPLEALILNSPIEALITHLTNM
SKHYLQLKDGYPDLMVIHNGKVHFEEVKAPGDKLRRNQLTTIDNLKSSGF
EVHIAVVKWFIDPNRIYSVVDLETTGALKGGNKITEIGLVKVQHGKVIDT
WTTLVNPQRHIPGFITSLTGISDSMVSNAPVFADIVKPLMAKLAGSIFVA
HNVNFDYGFIKKECEMAKVPFKMPKLCTVVESRKAFAGLKSYSLGNLSKH
FNLNLTSHHRALADATATAQLLLLIQKSQS
>PSHAa0416 conserved protein of unknown function ; putative transposase (IS408)
MDYCGPTMSIVDTSTGECRTAQVFVAVMGASNYTYAEATYSQKLEDWVMS
HARCFEFLGGVSELIIPDNLKSAVTKPCRYEPDLNPTYQQLATHYDTVIV
PARPYKPKDKAKAEVGVQIIERWIMARLRNETFFSLRQLNLKIQALLVNL
NQRKMKKHPGSRLSQFDAIDRPALKPLPTQPYSYTLVKQVSVHIDYHVEI
EKHYYSVPHTLIKQKLEAHASGKLVTLYHQGIRVAVHPRSYREGAHTTLD
LHMPIAHQKQQQWTPQRFERWASKFGTSTEQFVMQLMQAKKHPEQSYRAC
MGLLRLGKKFSDQRLEAACHRALTTGVTRVKQVKTILEKGLDKQPLPQAQ
GDLLQDIDHKNIRGNHYYH
>PSHAa0412 putative orphan protein ; putative transposase (partial)
MPASGWAYAQVIYGGESFAAFSDGVQNAFKAAGGVPKEVRTDSLSAAYRN
HTNDNDFTERFNELVIHYGFKATRNNRGIAHENGAIESPHGHLKSQLEQA
LKIRGSYDFQTRVVYESFVADIVARRNRRVSDKYAVEQRQLHALPKTMSV
SYTEHYLTVSRTSTVSLKRVTYSVPSRLIGSRLLVRLYDNRLELRYGSDL
VQTLARVYASKGCRARNISYLHVIDALVKKPLAFRYSQLRDDLLPSDNYK
AIWEYVNAHLLADEASYYMVKLLHLAKQSGCERQLGRFVAASITQRQLPA
IRECEAQFLVIASNIPTITIKQHSLSAYSSMIPGGLHG
>PSHAb0119 putative helicase (recQ-like)
MTPSLIQSLEQHFGFNQFRGGQQQTIEQLLNGQSSLAIFPTGSGKSLCYQ
LTALHLPHLTLVVSPLLALMKDQISFLNSKGIYAASLDSSQDQMQSSTVM
NDVRSGKVKVLMVSVERFKNERFREFINQIAVSMLVVDEAHCISEWGHNF
RPDYLKLPRYREELNIPLVLLLTATATKKVKRDMAERFAIAPECIVQTGF
YRANLDLSVLSVKTADKNTELANIISAQNGPGIVYVTLQQSAEQVANMLS
NQGLQAVAYHAGLEDTLRWQIQDDFMGGKINVVVATIAFGMGVDKADIRF
VIHYDLPKSIENYSQEIGRAGRDGNPSQCFTLANLDGLNTVENFVYGDTP
ELSGIEHVINDIRQHHSSQQQWEMQEYSLSSDSNIRQLALKTLLVQLEMQ
GAITPQYAYYADFKYKFLVDKNELLGQFDEQRQAFLTQIFSHTDFKKVWG
TLNFDSLTQAAQVDRKRVVAALDYLAEKQLITLETKRITQVYKVHSEVIN
NPELAQQLHDYFTDKEQAEIKRIAALVRFFELQSCLSYNLARYFDDQNAP
QQCGHCSVCRGHSVKLEYSVQADVVDESVIYQKVDEFLQHLASKGINNVG
VETQCRFLAGMSVPLFARNKVRQLSGFALCEAMRYSDIKAKLLARQLA
>PSHAa2523 conserved protein of unknown function
MSWFKQLWQNSREKGQYYELQAQKYLVSQGLTAIERNYYCPFGELDVIMK
DGNTLVFVEVKFRKNHARGGANYALSIQKQARLKRSIYHYLAAKNLTNQP
LRIDYVAITGEPSMHINWLKNVF
>PSHAa1369 conserved protein of unknown function
MNTLEQLRSGALSGARHLQLVENLTDFPKEIFTLADTLEVLDLSNNNLSD
LPAEFASLTRLKRVFLSFNQFKHIPAVLAQCPALVMIAFKGNQISEVAQH
SLPLTTQWLILTDNCIEQLPASFGELKQLRKLALAGNRLRTLPSSMQQCT
NLELVRLSANNLTHLDNWLFELPKLTWLAFAGNTFNKAQCLTKSSLENKP
LSDYTLQHVIGQGASGVIHLAKAANKAVAIKLFKGAITSDGYPLDEVNCC
LQAKEHANLIKVLAYIEQGSQLGLVMELIDNSFSNLGLPPSLQTCTRDTF
ADGCNYSSQAIYKIVQQMASTLQHLHANKVSHGDVYAHNTMVNQDADVLF
GDFGAATNLAMLSEYQRQQMQLIEVRALGCLIDDLLSVCSDNNAIAVKLA
QLAKQCMTTDILQRPTLSQLSTQLTTQL
>PSHAa0581 putative transposase
MEYETKSHCKYLIALHLILVVKYRKQLLKGDVGDFVKQKITEIAERSEFN
IEEIEVDKDHIHILLTISPNISVASYVRRIKQSTTQSLWSRFKWFKKQFW
VKKTFWSDGYFVCSVGNAAADTIRKYIQEQG
>PSHAa2244 putative 2OG-Fe(II) oxygenase superfamily protein
MQRPNANPQLLPNGFSYQSRALSAQKSLDLFYYLQQNLCWQQPNVTVYNK
TGPIPRLQCFISENNIEYGYSHSKLIVEPWPDVLLAMRKRLERHLNQPLN
SLLVNYYRDGNDTMGWHSDDEAELGHQPTIVCISLGAERVLKLKHKASNK
VTNLKLHSGSCLIMSGNSQRDYQHAIAKQTTLAHPRISLTFRLIKR
>PSHAa1990 DNA polymerase II
MSSIACDDYLKYVYNYSVYIKWDRTLTQAIYQGFILSRQQYSSKNRQGLT
LCYWLSSEYGPIKVVVENQQAVFFIAQQQQPLAQTLLAKAKIKVSFKAVN
MRHFSGVDCTACYFNDSSSLYKARAQLEEQINIYEGDIRHSDRFLMERFI
KGGVWVTGEALQKNGFIEITQAKLKANPEYTPQLASLSLDIECNAEGVLF
SVGLVGNGLDCVLMIGEPQPHSKAFNIDWCVDEINLLQKLQCYITSNDPD
VIVGWNVIEFDFSVLNARAEALGLVLNLGRDQQPLTIRTGHYTRLTLPGR
SVIDGIDTLKNATYHFDSYSLANISHKVLGESKLIQADNRLSEIIRQFNH
DKLALAAYNRQDCILVNRIFVKLKLFEFAIVRTQLTGLELERMGGSVAAF
TNLYLPLLHRSGYVAPNLGDHGLSFESPGGYVMESTPGLYKNVLVLDFKS
LYPSIMRTFCIDPLGLIEGLNSPEKAVAGFNDALFSRELHHLPKLIKHLT
RTRQKAKDTNQPMLSQAIKIIMNSLYGVLGSKGCRFYDPRLSSSITLRGH
EIMQTTRKWIEELGYEVIYGDTDSIFVKVNERLNATQCNEIGNDVMQVIN
KRWSDSIKTRFSLTSYLEIEFETHYSPFFMPTIRGKKIGSKKRYVGQIDK
NNAKQLIFKGMETVRSDWTQFAQEFQTELFKTLFDQQFEIEQLNNIIKSY
TKKLYAGEFDKKLIYRKRLGQNLSDYVKNIPPHVQAVKKFKANNPDFDVK
RGQIIEYVYAINGAEIYNANNTLNYPLYIQRQLEPVADMILSALGVQPNS
TQSTLF
>PSHAa1095 putative orphan protein
MKLAKAFIRNFRRLEEVEVDFEKSETVFVGPNNSGKTSATSIFRCFLSSR
DFKIHDFSIQRISEIDHYSPEGDITLPSIELDLWFDFDPENISFGRAFAL
LSSVSIETYEVGIRCKYAVDDISKLWAEYDTIFPIDDDGKRKRSLSHFLG
LDGNFKNHFSVQYSSLSRLDNDEIEETILKLSDGKRILNSLVRADFVDAQ
RNMNDDEEASRSSKLSTAFASFYRNNLDQVDINDAAIQIIDENNEKLTEH
YDEHFGSLMGVLNNLGVPAAHERRLKIISSISADVALRGSTDLIYIDAET
AHELPEAYNGLGFKNLVLMAIQIRDFQLQWLQTLENRPLCHLIFIEEPEV
HLHAQVQQTFIGNIWNILNNLDEDGIGSPQLVITTHSSHVLNSVDFEKVR
YFRRCHRSEEDPTVSQILRVSEIHNLRDFQASAVSTDGGEVDADAALDFL
KRYLALIHCDLFFSDAAILIEGTVERLLLPQMITKTSPNLNTKYLATLEV
GGAYAHRFAELMTFLHIPYLVITDIDSVKPPEGGGRAKACCAVDAGAITS
NASLKDMFVGKLLISDFNEIPAQDQSQADLDRFVAFQRPVEVDFLDERIT
VHGRTLEEAFIYENIQAFGGGEAFKGVVLPAEAKELNQSIYELIRESSFK
KTDFALTVLSSDDWQVPLYIRQGLEWLERRLQSQEQAIEEVSK
>PSHAa0341 putative transposase
MVQYAGNCRFLWNKALAINLFKLQNKQKICYYQELDFFSKLWKKSEEYGF
LTLSPAQTIQQTLKQLERAFKDAFDKNQPLKRMPTFKKKGEVNSFNFPQG
FKIDKNGKRIFLPKIGWVNVRKSQAILGKAKNVTVSQKGKHWFVSIQVEQ
EVAPPKHSSNAMIGGDLGVKRLITLSDGSFVEPIDTSKQTIRIKRLQKQL
ARKVKFSSNWKKLKAKITTFHTKVANIRHDKLHKISTQLSKSHAIIVLED
LKIRNMTKNSKGSSEQHGKMVKQKSGLNRVILNQGWGMFKEMLKYKQDWL
GGQVIFVDPKHTSQTCPACGHQSKDNRLTQSKFECAKCGYQDNADHVGAL
NILARGHRVLACGEIDISQLVEAGTCLMSDHKAPMVLN
>PSHAb0027 Peyer's patch-specific virulence factor GipA (transposase)
MLTHTFGCVRFAYNSALGYSKEQYDLGNKTNYNDWSKNLTQLKKNPDFAW
LKDVSSVPLQQALKHLDKGFKSFFKSGFGYPKFKNKHGNQSVSYMSNGFK
WEADKQSLTLAKMKQPLKIKWSRSFTGKPSSLTVSKTKSGKYFISILVKE
DIKKRPVANKTVGLDVGIKDLAICSDGTKFNNPRLTNKYASKLAKAQRKL
AKKKKGSNNFNKQKRVVARIHEKIANSRKDFTQKMTTKLVNENQVIGIES
LKVKNMVKNRKLSKHIHDANFGEIVRQLEYKADWYGRKVSAISQWFPSSK
MCNECGSLYSGKWSLAIRTWSCECGAIHDRDHNAAINIHNEGLRLIA
>PSHAa1523 conserved protein of unknown function
MHPAVQRFNRLPSTGSELSWQNASETARKKAQSRAVLVRHLLTQEGGLPK
AFELLVTNYRANLAPSTLMVAIEVLGKLPGRATIYNWCNAYKDNGINGLL
PNHKGKAQTQYSWLARSLELYHSPNSPSFAQVSDQLNKEGYKAQHHQVRR
FINALPHELGPQSPYRMGAKLYREKHKDHLLRSTDNIKPGVMYNGDGHTI
DVYLAHPKTGKPYRAELTAFQDVASRCIVGWELGYAESTIDTLAAISRAI
KVHNNVPAMFYLDNGSGYKNKLMNDDTTGFYAQFEIDVIFAIPGNARAKW
IERFFLHMEDRVGKKFSTYCGRHHNDRHKQLVLKEAKQGKRKLPSVDEWI
AEFKAFLNDYHNSEHPEVKGKTRQQVWDENVDRVPPVEGDFVMLPRETVN
IRRGRFRLHQRDYSADFLHQFNGQELIAAYDMHDDSYTKLYKLNGEFLMV
ANLKSKTHAIPSSRVEQAQQKRLTGREKRLQVHLQEVRAQEASTRIIDID
AVTELAAPVNAITEQLTPVNIFDFDVAPAVPQHEIDLNELLDQPLLRKEH
SYEL
>PSHAa0181 conserved protein of unknown function
MEKFNDIYQRAVERKGSTQMLQQLLAKPASKRQLVALSDDDWLEEFTRKV
FQSGFYWSVINSKWAGFREVFWQFSVEKLLMMPPDMLEQKASDERIVRNY
KKVKTIPENAFMIHEVTQQHGSFSQFIADWPSEDIIGLWAYLKKHGARLG
GNTGPYTLRALGKDTFLLSRDVESYLRAHKIIDGGLQTKKSLTAAQAFFN
ELQQQSGLSMQELSLIIAYSVGDNRVGISQQQ
>PSHAa2601 putative Holliday junction resolvase
MTKKNFKPQGQRTVMGFDFGTKSIGIAIGQELTGSASSLKAVKAQDGIPN
WDDIAVQVNEWQPDLMVVGLPLNMDGTAQEVTFKAKKFANRLHNHYAIPV
ETQDERLTTADAKARLFEQGGYKNLGKGKVDNMSAVIILESFFETSYGE
>PSHAa2361 DNA topoisomerase III (N terminal part)
MKLYIAEKPSLGRAIADALPKPHKKHDGYIEVANGDCVSWCIGHLLEQAE
PDDYDERFKKWQFEHLPIIPEQWQLKAKTKTRKQLTVLKKLIKQATALVH
AGDPDRALLRYFNENSLLQ
>PSHAa2319 putative lipopolysaccharide kinase family
MFKQHVQGKHTLLSHPSYENQVNLNWFNADYWQQQNKIVGAKKGRAMAWF
FKNNELTAVLRHYWRGGLVGKLLSDQYLYLGFEQTRVYKEFALMAQLIEL
GLNVPTPIAAKVTRSGLIYRGDIITEAVTGAKSVLDILVERALTESELTS
IATTIALFHRKGVYHADLNINNILFNDTGQIYIIDFDRGEIKTPALQWQQ
SNMERLKRSFLKEQGRNPVFNWQASDWQALYVCYTKLKR
>PSHAa0641 putative ATP-dependent RNA helicase(rhlE-like) ; DEAD-box protein family
MSEYEYNSALCHFKAKPMSATTFSSLNLDPLLLTAIEQNNYTQPTAIQIK
TIPPILAGSDVMGSAQTGTGKTAAFVLPLLHKLLNTPKKDEPGVARVVIL
TPTRELAQQVFASFEKYAQGTNIKGALAYGGASIGPQIKALKDAQVIVAT
PGRLLDHIVKGSVVLSSVDSLVFDEADRMLDMGFIDEIKRILRHIPGDRQ
TLLFSATFDDSVFALSKKLLKNPELVEVDKRNSAAVEVEQVIYSVDEDRK
RELVSHMIGMKNWRQVLIFTRTKQMADQLAKEMCKDGLKTESIHGDKSQG
ARDRALQNFKEGITRVLVATDVAARGLDIPTLRFVINFELPYIAEDYVHR
IGRTGRAGEQGLAMSLVSIDEQWLLEEIEVLLDTRLTPQWLAGYEPDPNK
KPKDNRKNTNKSRKDRDKKRITGQREPSRRRK
>PSHAb0039 putative protein with helicase domain
MSLSTFAPVTTIDDQKKLCVLLSLLLSSSSYSYQNSPQLFSKLLFNHFIN
GYSFSLAEVKKITRELEEQSLVWEQPFRQNHKLSIDAIVYAIVSLLEYCP
GLIKNFLTQITTIYRFNDSALMFMFELFNSIEKSEGSPLASSAEPEIDHH
FINLLAQSKYSKQLWLALPAQWQQICLEHFIRGEFFNLTAEHSWPSIVKS
TATAIEPSKRIYLNESLATLLQQPDYNELLIDKSHSNLAIFSQANSLAID
GTHLELALQQFKTGLTLYRKTFVKGSYPCEISGLLYMVCLYASGTEADLK
QLKTHKNWYNKQLGELSSTTQAIEFLLLAPEQVISFEQRLLHDTIANLQA
NPNALAPLFCLLLALIKHGSEEQINTLRDNSKLLSQLIHSSQQHQHWLGE
QCTHLANWLTHDTPLPDTGLLQHFKRVPQWQRWLNEISKIDTPAQNERLV
WQLDLTHLDLPLIQAKVQKHNSKGEWTKGRKVNIYDLDDDQYRHLLSPAD
HNLVQVISNHAGFGYSEVQATSAVLQALINFKGLEDIKGNLVTLNKGEFI
IEIGQNINDCYQLIIQPKITDIDGDFLLTHSHANSYQVFVVDDKQHKLNS
LLAQQPNNLTEEKLPQLNAALEALSEDHYISSSRSEFSAVNNVRQGLVDL
AAVIKLTPMGIDVNFYTMPFGVDGPWVEPAIGAITLAYSDNEQADNSVVK
RDLKAEKRALKNLLSNLAGVFADQEHPQYNSAHQQFYLPEDISQAIIQLE
AAQKDNALVLSWDENAQGMKVANSKHLSLNLNDDNDWLSVSGKLSLPDGQ
IIALQTLLKAPRRGSIIEFDENNSLLLDQRLTNLLNRLEGMQSKTKNAPD
DQLRIANARALPLYHSAAELSDVSFGANWQQRLAKFERPSEPVLPAHLVN
ILRDYQVVGVKWLMQLANWGLNACLADDMGLGKTLQTLNVLQMRSALGAS
LVIAPKSVCHNWQVEAARFTPTLNIKTIDNAAATDEVLAGATANDLVIVS
YGLLPLIGDQLAAYEFANIVLDEAQAIKNPLSLRAKAAFALNGQFKVALS
GTPIENHLGELWSLFNFLMPGFLHSLAEFKKRFGNADKNQQQADTLKTLI
APFILRRNKKTVLTELPDKTEINLTFALSDKEQALYEATRLNALEQASQE
DSQYITILASLTKLRRACIAPQLLIENSKLPSSKLDTAEAIIEELLENDH
QALIFSQFVDVLKLVEQRLKKRGIAYCYLDGSMSSNKRKQQVDKFQAGEA
PLFLISLKAGGTGLNLTAADYVLHLDPWWNPAVEQQASDRAHRLGQTRPV
TVYRLIAQNTIEEKILQLHEHKQALADKVLSGSSNTGQLSKDQLLSLLQN
Q
>PSHAa0419 putative enzyme with RNA-directed DNA polymerase domain
MAIMKRKVNWVLDLDISKFFDTVEHDWLIKFIEHRIGDKRIIRLIRQWIK
VGTVDSHGHRQQSTIGTPQGAVISPLLANIYLHYSFDLWLNKQRKYARGN
VTIIRYADDAVLGFQKHQDAIDCQRALTQRLLCFGLKVHPNKTKLIRFGR
FAPTQYRENPSRGKPGTFDFLGFTHYIGKKLSGEVIVKRKTKRNRQITQL
KRIKQALRKRLHDKPWETGRWLRRVIQGHINYYGVPYNAHKIGQFVEEVK
KLWLKSLRRRSQRHRMTWERFKYYVRYWLPKPRIVHPYPEQRFYAKYPR
>PSHAa0410 putative transposase (IS66)
MKIDTHSLPDDPEQLKQMLLELQAKTTQELAEKDKIISEQAIQINQFIER
YEIAKRKQFGKSSEQLPGARETFNEAEEIIDEADKTLLAAADSHNKITIK
NKPTRKPLPKELPRKVVTIDVSIDEKMCDCCQGKLHKIGETRSEKLEFVP
AYIKVIETVRPKYACKKCEQTGTENSIKVAPVPATPIPKGIATSSLQSQI
ISAKYQYGLPLYRQEKMFNEYGIELSRKTMSDWIIRCSELLMPLVNELKA
ALLSQAVIHADETPLKVIKADNSSSYMWVYCCGSDSVTANSLPNIILYDY
HNSRAAACVVDYLGDYDGYLQVDGYAAYGKTDAILAGCMAHARRKFIDAK
TVQTKNKTGKADVALSLIRKLYGIEASLKDKTAAERYQARQESSKPIIDK
LHHWIIENKDKVPPKSKLGEAITYWCNQEHKLITYLKDGRINIDNNRAER
AVKPFVIGRKNWLFSNTARGATASAVLYSIIETAKANGLLVDNYLQTCQD
ELAKKPESVEHLLPWNVNQG
>PSHAb0003 putative DNA helicase with SNF2 domain
MSANLSKTDLMAIFEEIKNEQATQFPLSERFIKKLFKPAVLAKGKAYYKN
GQISWLEHNSDFSVVDSTVRGDKGISFNQRIEISKVPTGYSVDTHCTCNV
KTKCRHLAAILLKLKIEHSGEYGEDYFINDWFTELGALKNSTEQPPSQVL
LFVLDVENNKVFLTPKIANYDENQSYALGRNLTEQQLNSFVTPSDLLESD
FRLFSWIRSQNAVGNIELKGQWGFNALQQLIATERLFLQRSRVSIKAQTG
QALSFSWQQVKDLTQLKVNLENSKNWTLIKTTPPTYLDLDTYKVGRIRTP
LSADEIAHLQTIPALHDTNFDRIYKQLADNFGSGVIPHPTNEKNNTSKLS
SNAVLKVTMSAEGLTLSLLFKYKNKNYFAGTAPETLVNSAFENTVKNELI
NLGFDFCKGGLQSEFIFNKQSPIHLHWLVYEVFPSFVQRGWKVSVSKVNA
VNPQSQVALHVHRTAGHQMQCKIILNDAKATLLFNQTDAHYESLNRQSEL
FYYYPIGREFGAINKAALHLLNEFKQRFEFIKTRDEFNIPLSYLPELVSH
TAINVELHDESLSRYLEELNSNDQSRPTTLIQGLNDSVVLREYQQQGVAW
LNFLKRHQLGGILADDMGLGKTLQVIAYLTSSYNNAQAGPTLIVCPTSLV
SNWEKEITKFAKNLKVTTIFGAQRNELLQNVAQAQCILTTYPLLKRDIAY
YSPLYFENIILDEAQYIKNDTAQVSRLVKRLNADFKLCLSGTPIENNLFE
LKSLLDFAMPSLLGSQTHFKTHFQTPIERESNAERAQQLKDLIMPFILRR
TKAQVAQELPLKTELIKEFEFEPKQKEMYHSITQALEEKLTDLFSEQGMQ
KSKLAFLEALLKLRQICCHPKLIEPTTQAGSAKLEWLSNRLPLMLSLGRK
VIIFSQFTSALDLIAERLKEININFSLLTGQTRQRDKVIDEFTSGATSVF
LISLKAGGTGLNLTQADTVIHYDPWWNPAVEKQATDRAYRIGQTNPVFVY
KLIMANSIEEKVFKMQQDKQALVDALFTEKSMSFTQFDEQQMLSLIKD
>PSHAa2105 putative RepA
MSSKNSPKIVFANKLLHAGYSLEINEQRLINLALSKINSKKSNPGQIVIY
PTEYAKCFGLRKSSVYEQLSSAVESLKDKFVSILDDKGEAVSIPWVSNAT
YEKLKNQGSFITLEFSKEIEPYIFNIEKNFTRLFFHNTVKLNSLASFRLY
ALLNRVRNYHNYKRKGEVVVNFQLPEMKQKLFLSESYGAWRDFKNRVLLP
AIEKINAHTDICVTFKPKKMGNCITAIEFAYSTQCPSKSEHIARPNLFRR
PRVKKRSAKEGEWARANLTLLRTYELLKQNQNPTFKLKKADVRRCVEYAK
ILGDDESKIFYSKQLNKKQP
>PSHAa1748 alyll, putative chondroitin AC/alginate lyase
MYLLKCQTRFKTVAIAVSTLFLSLGAHAAHPNLVITTDDVKHMRQAISSN
SSGKFATAFELLKAQVDEQIAHPITVPVPKDGGGGYTHERHKKNYQLMYN
AGIIYQLSQDDKYANYVRDMLLDYAKLYPTLDVHPKRKVDSQNPGKFFWQ
SLNEAMWLVYTIQAYDLVYDSLNAANIKTIENDLLRPVSLFTSVGQPSTF
NKVHNHGTWATAGVGMAGYVLGEPEWVEKSLYDLEKSGKGGFIKQLEMLF
SPQGYYNEGPYYQRFALLPFVTFAKAIENNEPQRKIFEYRDGILLKAIDT
TIQLSYNGLFFPINDAIKSKGIDTIELVHGVTTAYGLTNDAGYLDIAKQQ
EQIILSGDGLKVAQALDSDMAKPYSFKSVAFGDGNDGKQGALVVMRTQVG
GDQALLFKPAAQGLGHGHFDKLTWQFYDHGNEIVSDYGAARFLNVEAKYG
GRYLPENETYAKHTVAHNTVVVDETTHFNANVDVGNNNHPTLNFFETNEF
GTVSSGEISTAYKGVELERTLALINLPELESSIALDVFNVAADNAHQFDL
PLHYKGQLIDTSFELKASTTQLAALGSKNGYQHLWLKGQAQPQNGLAKVT
WLNDNGRFYTQTSLVKGDESFLFTQIGANDPQFNLRNENGFIRRVNAQKQ
HTFISVLEPHGEYNPSKEYTLEAVSRVSALKYTEQDDLVLVQLSIKGKSY
LVAINKAHSTIKNTFKFQNKVFTLNSRLGVYAMNNNQE
>PSHAa2712 dam, DNA adenine methylase
MQQKSRAFLKWAGGKYSLVEDINARLKQASQQADTLVEPFVGAGSVFLNS
DFKHYILNDINADLINLYKELKNSPDEFISDAKKLFVDLNNHPDAYYEYR
VQFNQSSDIYERAMLFLYMNRHGYNGLCRYNLKGIFNVPFGKYKKPYFPE
KEMYFFAKKAQQATFTCLDYDDIFKLVPKNAVIYCDPPYVPLSKTASFTS
YAKGGFNLDDQANLANLAEQAAFENDTPVLISNHDTVWTRKIYSQATLDQ
IQVKRTISPKGGSRNKVSELMAMYLAPKQQSRKSK
>PSHAa0109 dbpA, putative ATP-dependent RNA helicase; putative cold-shock protein; could be specific for rRNA folding
MTTTAFSSLALPSGLVDNLSTLGYTHMTPVQAQSLPPVLAGKDIIAQAKT
GSGKTAAFSLGVLAKLNVKRFRIQSLVLCPTRELAEQVAVEMRKLARGIH
NIKILTLCGGVSIGPQIGSLEHGAHIIVGTPGRVDDHIRKGTLRLDDVET
LVLDEADQMLDMGFQDTLDAIIERIPTNRQTLLFSATFPRAIEAVAKRVL
SNPVMVKVEEEQAKSTIKQYFYKMDNNKQRYPTLKLLLLKFTPQSCVVFC
NTKVETQQLCDDLVDEGFSAVSLHGDLEQRDRERTLIHFSNKSASILVAT
DVAARGLDIDDMDMVINYHLAHDTQTHVHRIGRTGRAGKKGIACSIYGEA
EAFKIAQIGDHYERDVIPEPMPSFSLLEKPPYKPEMVTLMLDSGKKQKVR
AGDILGALTGKDGIAGRQVGKINVLDNVAFVAVERNSSKPALRKLTEGNI
KGRKIRARRLTC
>PSHAa0990 deaD, ATP-dependent RNA helicase, cold shock protein A
MSEPVTFESLNLSPAILKAVEELGYKTPSEIQAQCIPLLLERKDVLGLAQ
TGTGKTAAFALPLLNNIDPSVKQPQILVLTPTRELAIQVAEAFEQYAKHV
RGIEVLALYGGQSYSIQLSALRRGAQVIVATPGRLIDHINRGTIKFDALQ
ALVLDEADEMLRMGFIDDVESIMEKTPREKQTCLFSATMPKQIQNISSKY
MNNPEQVHISARNSTVSSVEQVFWNASIHKNKAIVRFLEAEQYEGAIVFV
RTRNDTVQLAELLEREGFSAAPLNGDMNQQARERTVERLKSGMLNVVIAT
DVAARGLDVDRLSLVINYDIPQDSEAYVHRIGRTGRAGRTGKAILFVKHN
ERYLLKNIIRHTNSDIAQVELPTAKIVEEKRIEALQAKLTLALENKDITF
FNEVAANMAQKLELSAEDLAGALLCLAQQQSPIKVEEVKIQPRERNERND
RNPRSNDRGDRGRRNERGGERGGERAERKPRERNSRDAGPMDTYRIEVGR
EHGVQVKNIVGAIANEADISSKFIGDIRLHDNHSTVQLPKNMPKDVLDHF
QKVFICKRPMGLTITADQGPAEPRGERSERPAGGEKRSFNKDDSARGDKR
SGPRKERRPVSFTTPK
>PSHAa2389 dinB, DNA polymerase IV, devoid of proofreading, damage-inducible protein P
MKKFIHIDMDCFYAAVEMRDNPKLANVPLAIGGNSRRGVLSTANYIAREY
GVRSAMSNYHAKQLCPDLVIVPGRMAVYKDVSTQIRAVFSRYTDLIEPLS
LDEAYLDVTHSEQCKGSATLIAQQIRADIYNATGLTASAGIAPIKFIAKI
ASDENKPNGQFVVLPDQVDAFLAQLPLGKIPGVGKVTLEKLNLKGLYTGQ
DVRKKGVNWMQQHVGNFGVSLYQKCAGEHIGRVSTERVRKSLSVEHTYEY
NKNSLQECLEQLPSLLEELTTRLNKQQLQNQVNKLSVKVKFANFVVTSAD
QAHQQLNSDIFSELLAKAYQRGLQQPVRLLGIGVGIKNQPQHNLQLSILD
M
>PSHAa1991 dinG, putative ATP-dependent helicase DinG
MLSSSLKKTIRQVHQHVANNLSDYRPRSSQNYLVAEIAKTLAGEYHKKQR
ICVIEAGTGTGKSLAYCLGALPLALAQKKKLVISTATVALQEQLIAKELP
FFKKHSGLSFKFDLVKGRQRYICAHKLHNAVNGDSQTQMEFMPTLSSPLS
VMETKCLNELYTAYTTKKWQGDRDSWADTVPDKVWGLIACDKHSCQRQMK
AHQTCPFQLARQQLMQMDVLVINHSLLLADLDLGGGKILPEPDNTIYVID
EAHHLAHITRDFSSAAATIKGTIEWLDKLTKFSGKMAKVIVGQKAIGQNF
KLCDSINDANKDLKVVRDILDNADFEYSKDDTYRFENGEIPQSLHSKAKD
ISEATQDALRCLSKMHDTLTQDVSDGDIKPYVADPILGESGQYINRLEQL
NKLWFSYANKGEGTPHARWIKRLEYKNHHDHLLSDCPIEVGYYLKDKLWS
ECAGAVLCSATLSALGSFDHFAYETGLAKEEGVKFIKVPSPFDYPNQATL
RIPVSKIEPTDKAFSDHLANTLPEYLDTKKANLVLFASYWQMDHVSKFLR
TKGFNLLVQGEMSREAMLKLHTKNIDEGKGSILFGTQSLSEGLDLPGKYL
ENLIITKIPFAVPTSPIEEAQAEFVQSKGGNPFLSITVPDAAKKLVQSCG
RLLRKESDAGCITILDRRLITKRYGKAMLDTLPPFKRQIDY
>PSHAa0001 dnaA, DNA replication initiator protein, transcriptional regulator of replication and other genes; binds DNA at DnaA boxes, binds cardiolipin and other acid
MMCGNKNYISGSLTVYLSVWQSCLYVLQDELPSQQFSMWVRPLQAESTED
TLTIYAPNRFVLDWVREKYLNRINELLVEICGVEAPELRFDVGSKPLLNA
QPVSVAGTQSAPTTQAKQQSRQPKPVVEPAPKSEYKSNIKENYTFDSFVE
GKSNQLAKAAATQVADNPGAAFNPVFIYGGTGLGKTHLLHAVGNGILANK
PDAKIVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALMIDDIQFFANK
ERSQEEFFHTFNALLEGNQQIILTSDRYPKEIEGVEDRLKSRFGWGLTIA
IEPPELETRVAILMKKAQQSKINLPHEVAFFIAKKLRSNVRELEGALNRV
IANANFTGRPISIDFVKEALRDLLALQDKLVTIDNIQRTVAEYYRIRISD
LLSKRRSRSIARPRQVAMALSKELTNHSLPEIGDAFGGRDHTTVLHACRK
VKSLRDESHEIKEDYQNLIRTLSS
>PSHAa2435 dnaB, replicative DNA helicase; chromosome replication; chain elongation
MLDNQAFDRVAELVVSQDFYTRTHKLIFEAMTTLAEIGDPIDLITISESL
EKNNKLAGIGGFAYLAEIAKNTPSAANIDAYASIVRERAVVREMIGVANE
IAEAGFNTEGRTSHDLLDFAESKVFKIAEQRTKNNEGPQSIHSILEKTVD
KIEELYQSPQDGVTGVSTGYADLDKMTTGLQPSDLIIVAARPSMGKTTFA
MNLAEHAAMTQDKPVLIYSLEMPSEQIMMRMLASLGRINQTKVRTGQLDD
DDWARLSSTMGLLMEKGKMYVDDASGLTPTDVRSRARRIARDHGGISMIM
VDYLQLMRVPSLADNRTLEIAEISRSLKALAKELKCPVVALSQLNRTLEQ
RADKRPINSDLRESGSIEQDADLIMFIYRDEVYNEDSTDKGIAEIIIGKQ
RNGPIGKVRLTFQGQFSRFDNYAGPAVDDDY
>PSHAa2015 dnaE, DNA polymerase III, alpha subunit; the entire polymerase contains 10 subunits
MAAPDFVHLRVHSDFSMVDGLAKTKPIVAKAQELQMPAIAITDQMNLCGL
VRFYETAHSTGIKPIVGADFWLRSPEFENEPSRITILAKDNQGYKNLTLL
ISKAYQRGHVFHRPVIDRDWLIELKAGLIILSGAKDGDLGKALLKNNPSV
IESVVSFYKQHFSDNYYLELVRTNRPLEEDYLHMAVELAAKEQLPVVATN
EVVFLKPENFEAHEIRVAIFDGYTLDDKRRPKRFSEEQYLKTPEQMAELF
SDIPEALQNTVEIAKRCNVTVQLGTYFLPDYPTGSLKIEDFLVKVSQDGL
EERLQFLFPDEQERKEKRVEYDERLDIELGVINEMGFPGYFLIVMEFIQW
SKDNNIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERISMP
DFDVDFCMDRRDEVIDHVSALYGRNAVSQIITFGTMAAKAVIRDVGRVLG
HPYGFVDRISKMIPGDPGMTLAKAFDIEPRLQEAYDGDNEVKDLIDMCRI
LEGCTRNAGKHAGGVVISPTTITDFAALYCDDEGKFPVTQFDKNDVETAG
LVKFDFLGLRTLTILQWALDMTNERLARTGKEPVDINTIPLDDKKSIELL
LRAETTAVFQLESRGMKDLVRRLKPDSFEDMIALVALFRPGPLQSGMVDN
FIDRKLGREEISYPDAQYQHESLKPILEPTYGIILYQEQVMQIAQVLAGY
TLGGADMLRRAMGKKKPEEMAKQRSTFEDGARNNGIDGELAIKIFDLVEK
FAGYGFNKSHSAAYALVSYQTLWMKTHHPAEFMAAVMSADMDNTDKIVIL
VDECENMKLTLLPPDVNAGEFKFTVNLQGEIVYGIGAIKGVGEAPVEAIL
EARAKGGPFKDLFDFCARVDLKRLNKRVTEKLIYSGALDQLGPEKTQSGR
ATLLASLKSAMRAADQHNKAELLGQSDLFGLLATEPDEVEQAFIKATGLT
DNEWLDGEKETLGLYLTGHPINQYRRELKYYTSGKLVDLQPTNRDVVSTA
AGLVISARVLINKKGNRWALITLDDKSARIDVRLYSDEFEKYQDMLQVNN
ILVISGQVSFDNFSGGITMTAREINTIAQAREKRIKAIKMTLNMVQVEAG
FFDKLQKVLEPYKMGTCPIKVYYQRPDALAQLTLGIEWCVTPSDDLIHKL
SLMAAQDVELEFN
>PSHAa0350 dnaG, DNA primase
MAGKIPRNFIDDLLARTDIVDLIDSKVGLKKAGKDYQACCPFHNEKSPSF
TVSQDKQFYHCFGCGVNGNAISFVMEYEKLEFVDAIEELASLLNLEVPRE
QGSGSAPERTAAQKRSDYDLMLHTARFYQHQLKHHSNSAAVIEYVKGRGL
SGEIVKKFMIGYAPSEWDGLCLQLGRNKEQKEQLVELKLASEKTPGRQFD
FFRDRLMFPIRDKRGRVVAFGGRVMQADQGPKYLNSPETRIFHKGFELYG
LYEAKQAHKKLDHVLIVEGYMDVVALAEQGIEYAVAALGTATTSEHMHTL
FRTTDKVICCYDGDRAGRDAAWRALENALPYLNDGKALNFVFLPDGEDPD
SLVQAEGKDKFEQRLNAADDFTKVLFNKLSLEIDLTLDSGKAKLLSAALP
LIEKIPSEFYQENILEQLGRLIGRTREQLNNRLKTPKQQHSIERKFKITP
MRQAIGILIQHPQMAKSVPYLPDLAQMNIAGIGLLLRLQHQALQKEDVTT
AQLLEFFRGTDDYDPLTKLATWQHQINEERLETVFQNTFKFIEDQCLNYR
LETLLIKDKTQGLNSDERLECHLLMTALKATNS
>PSHAa0002 dnaN, DNA polymerase III, beta-subunit; processivity clamp of DNA polymerase III
MQITISRQQFLKPLVQVSGAIERKHTLPILSNVLLAVENGQLSMTGTDLE
IELVASVFVGDDIADTKLTLPAKKLLDICKSLPDGSDLTLSLQEHQLLLT
SGKSRFSLTTLAAEDFPNLEQWDGEVEFQLTRLELRKLLESTHFSMANQD
VRYYLNGMSFEVDNTDIKTVATDGHRLAIAQKQLKQSLNTQRQLIIPRKG
VQEIMRLMVADEELVTIQFGANHIRIIDIEFTFTSKLVDGRFPDYRRVLP
RGGDKVITANREWLRSAFQRVSILSNEKFRGVRLNLSNGLLKITANNPEQ
EQAEEVVEVGYEGADLEIGFNVSYVLDVLNTLKTEDVLFTLADSNSSALI
EGAGDEEAMYVVMPMRL
>PSHAa1963 dnaQ, DNA polymerase III: epsilon subunit, 3-5 exonucleolytic proofreading function
MARRQIVLDTETTGIDPKQGHRIIEIGCVELVNRRLTGNNFHVYINPQRN
SEEEAIDVHGITNEFLRDKPLFHQIAQEFFDYIKGAELVIHNAPFDIGHM
DNEFSLLNQGYPKTATFCQVLDTLKMARDLHPGQKNNLDALCRRYDVDNA
KRTLHGALLDSEILADVYLAMTGGQVKLNLNQNKNDDTDQQKGGIRRLSA
QRAPLVVLSASEAEQAAHEARLDIVNNEGGHCIWRAD
>PSHAa2879 endA, Endonuclease I Precursor (Endo I)
MTRFILALLAFFVCFSLSAEEFTRFSTAKRHLIKTLPSNAKSIYCGCDIK
KQGKKLVPDPTNCGYVPRNTHTRSGNVNARALRIEWEHIVPAWEFGHQLQ
CWQDGGRKNCRKVSAKFRKMEADINNLAPAIGEINADRSNYRFGMLSESA
TQYGRCEVKVNFKQRVIEPPFYARKQIADAYAYMQKTYGLKISNKQQQLF
NAWQQQAYAAQTNTKKL
>PSHAa0346 fis, DNA-binding protein for site-specific recombination and inversion, transcription of rRNA and tRNA operons, and DNA replication
MFEQNVTSPFITNPHVQAHEKPQPLRDAVKKAVHHYLKQLNGQDVQDVYD
LVLSELEAPLLEEVMTYTRGNQTRAAILLGINRGTLRKKLKKYGMN
>PSHAa1421 gyrA, DNA gyrase, subunit A, type II topoisomerase
MTDLAHGILPVNIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLF
AMNELSNDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRY
MLVDGQGNFGSVDGDSAAAMRYTEVRMAKMSHELLADLEKETVDFVPNYD
GTEQIPDVLPTRVPNLLVNGSSGIAVGMATNIPPHNLTEVVNGCLALIQN
PELSILELMDYIPGPDFPTAAIINGKKGIEQAYLTGRGKVYMRARAEIEV
DEKTHRETIIVHEIPYQVNKARLIEKIAELVKDKKIEGISALRDESDKDG
MRIVIEIKRGDVGEVILNNLYAQTQLQTVFGMNMVALINNQPKCFNLKEM
LEEFIIHRREVVTRRTVFDLRKARDRAHMLEGLAIALANIDPIIELIRNS
PTPAEAKVALTARSWELGNVKAMLDKAGEDNVARPDWLAAELGIRDGQYF
ISEQQAQAILDLRLHKLTGLEHEKILTEYQSLLDLIAELLHILATPERLM
EVIRDELVEIKAQYGDERRTEINAAAHDISLEDLITEENVVVTLSHEGYV
KYQALSDYEAQRRGGKGKSATKMKDEDFIERLLVANTHDTILCFSTAGRL
YWLKVYQLPLASRAARGKPIVNLLPLEADERITAILPVREYAEDKYIFMA
TAFGTVKKTPLTAYSRQRASGIIAVNLNEGDSLIGVDVTDGSNEIMLFTD
AGKVVRFKEAEETTVVDENGNPVLDEEGNPEIRFKGVRPMGRTATGVRGI
KMPEGQRVVSLIVPKTDGAILTVTENGYGKRTLLEDYPAKSRATQGVVSI
KVSERNGAVVGAVQVDDNDEIMIISNRGTLVRTRVNEVSTVGRNTQGVIL
IRTIDEEQVVGLQRIEEIEVTESDLIDIEDVETVDTVIDEVADDNPPSE
>PSHAa0004 gyrB, DNA gyrase, subunit B (type II topoisomerase)
MSENYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDE
ALAGHCDDIFVTIHLDGSVSVRDNGRGIPTSIHEEEGVSAAEVIMTVLHA
GGKFDDNSYKVSGGLHGVGVSVVNALSEKLKLTIRREGKLHEQTYSHGVP
DAPLAVIGDADTTGTELRFWPSDQTFTNLDFHYDILAKRLRELSFLNSGV
SIILNDEREENKSDHFKYEGGIRAFVEYLNRNKTPIHKGVFHFTHTREED
GIVVEVSMQWNDAYQENIYCFTNNIPQRDGGTHLAGFRSALTRTLNNYME
KEGFNKKAKTTSNATGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVK
SAVEQAMAEKFTEFLLEHPTDAKIVVGKIIDASRAREAARKAREMTRRKG
AMDLAGLPGKLADCQEKDPAQSELYIVEGDSAGGSAKQGRNRKNQAILPL
KGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPEKLRYHRIIIM
TDADVDGSHIRTLLLTFFYRQMPEIVERGYIYIAQPPLYKVKKGKQERYI
KDDPALVEYLTTLALNNATLYTSTDASGIEGEALEKIVHDYQNTVKVIER
LKRKFPNTVMNRLIYQSELKKEDLSDEAKVIAWTKELVDDLIDRDEDATI
FQAATEHDTERNLYYPVVKIRQHGVDKAHVLHYDFIASRDYQRIAVTGVN
IANIITEGAYIQRGEKTQPVDNFVDALEWLIAESKRGLYIQRYKGLGEMN
PSQLWETTMDPDARRMLQVTVEDAVAADQLFATLMGDQVEPRREFIEQNA
LRVVNLDV
>PSHAa1905 hda, putative regulatory factor involved in inactivation of DnaA
MALPVTLPDDETFTSYFGGEDSLEVSHLKDSFSKLSQSFQYTYLCGLGDS
GKSHLLYATCIQAQERGLSNMLLSMREVIDFGPMVLEGLEALDVLCIDDV
HLVAGDDAWEKALFNFFNRFNEPKKMLVVTADLLPDMLNISLPDLESRLK
WGTTLQIRSMSDDDKAQALVKRTKMRGLELSDECARFLLTRLSRDMRTLL
DVLDKLDHASMAAQRKLTIPFIKSTLKL
>PSHAa1890 helD, putative helicase IV
MAQYFATPSWLGRFFTRIKLLSIEQESLVIEFKNATKQSFLIKDFNDFSQ
LQNRIFSAQINLTLGENSAHTTISFLNKAQAKALNIAINQYFSQALEHKI
NNAKALLKRTALDEYLRDSNTTILSAEVFSLSKRYQQNHNVWQGYLPSNS
SQFLSVLASAKNKNDAIAQLRNKYERKQLAQRADFYNNVESNPLTNEQRL
AVIRNNDKNLVLAAAGTGKTSVMVAKTLDLIATKQAMPEQILVLAYNKTA
AQELKTRFIKRAQQAKLSSKSPEVLTFHALGLQLLQQAGKGCNISPFVSD
FGALSSWLTSWLSEQVQAQPVLLSAFIAMLDKPLVSCDTHKSKFNATQVL
AILKDSGQLKHEVDKYLKCLAAIRAEQLTDSEITQRLKRQNNQLNTVQLS
TNQLNTSQVNSNQKSTNHHSAAAQLLIAMHRAYKTQLIAQNCIDFDDMIL
QATQAVNKQQVNVPWQHILVDEFQDISAARMALLNSLIKHGHKVRFTAVG
DDWQSIYRFSGGNLALTTRFNELVGSHSLTLLQKTFRYNNSISDVAGRFV
MQNPEQYKKLIITHTQVAEPQVILLDDVYQGKKSLELKTQQTINTIQKHH
ANASIAVLSRYRYTLNKVQQHLASQQKSANVAFLTLHSAKGLEADYCIII
GLEQGKFGFPSSQQNNPLLEALLPSQDTFAYSEERRLLYVGLTRAKHKAY
LIADAKQPSLFVKELINDNYPIHIASTLFSK
>PSHAa2624 hepA, RNA polymerase associated protein (ATP-dependent helicase HepA)
MNFSLGQRWISDTESDLGLGTVVAIEGRQVSILFPASGESRVYSWAEAPV
TRVSFNPGDVIKSVEEWELEVESIEVQGELLCYHGTRVDNGEAAKLKETF
LDHFIKFNKPQDRLFAGQVDRFDRYTLRYQTWLHKFEREQSPIKGLIGQR
ANLIPHQLYIAQEVGKRFAPRVLLSDEVGLGKTIEAGMILHQQIISGRAS
RVLIVVPENLQHQWLVEMLRRFNLRFSIFDEDRCDEAFADSPNVFDTEQL
VLTSLEFLTKKKRWFEQATLADWDLLVIDEAHHLSINNGKPSSEYQRMAE
LSQDIPGLILLTATPDQLGHSSHFARLQLLDPDRFYDYDVFKEEEANYKD
VAEAANQLLQEQGLDESAKATLIELLKETDITDILAKAQQGDLPARKEIL
NMLLDRHGTGRILFRNSRSGIDGYPSRILHAYPMPLPKQYKTAMTVLGNM
SGIQNPELSAQRALFPEKIFQEFEGESASWGAFDPRVDWLIDTLKTLKRE
KVLLICAKAETAISLEQILREREAIKASVFHEGMSIIERDRAAAFFADEY
DNAQILLCSEIGSEGRNFQFSHHLVLFDLPLNPDLLEQRIGRLDRIGQTQ
DVNIHVPYFENTAQEVLLRWYNEGLDAFESTSSTGQMLYKEFRDDLLDYI
AAHNCDEDELDPLLEQVAQKNAVLRKQMESGRDRLLELHSSGQGAADSLV
ADIEKLDNQFELPSYMINVFDTFGVSQEDKGENTIILKPTEHMLNASFPA
LREDGMTVTFDRDTALSQEDVHFISWDHPMVQGTLDMICDDDFGSASVAL
LKNKKLPPGTFFVELIFVAEAMAPKVLQVGRFLPPTPIRILLDKAGNNLG
ENVAFDGFNQQLSAVGRQTASKLAGALQSAIHPMISTAKDMAQEKLEVIR
AASLAKMQTSLSEEQQRLVALKQINPNIRQEEITFYDKQRTDLTTYIEKT
QLKLDAIRLIVVSH
>PSHAa1029 holA, Putative DNA polymerase III, delta subunit, probably ATP hydrolase
MRCYANQLPSELKKGLKPFYLVFGEEPFQEAQCVQQIRAIAKEQGFDEVI
KFTLMQGFDWQEIIAQYQSMSLFSARTIIELDLNQQKPGIIGSNTFKKII
ELINPDTILIIKGAKASQDVQRSAWFKALDKHGLFVPCYPLTGTHVKRWL
DEQCQRLSLNMQNEAKLSLISATEGNLLACFQELEKLSLLHANALITQQL
VMQGLLNQAKFDIFDLSDALLNGQAKQAIKVLNKLASDNTEVVSILWAIT
KELNTLIDVQIGLLNGEPIANLFKQKAIWKNQQAPVQSAINRLSIHTLEQ
ISSELAIFDASYKQGNLIAPYQALAHICIKFCQPLNISLPCHPVN
>PSHAa1802 holB, putative DNA polymerase III delta' subunit
MTLPWLHDIEQRLTQSFKAQRFHHAQLFSGPIGVGKFAFASQLANALLCN
NIAEQVAAKKSVLSACGQCKSCLLIKAGTHPDKRLTQVDGQSIGVDDIRG
ISDFMHHSAAQNGNKVAIIENCEKMTTAAANALLKTLEEPSQSRFLILTS
SQATQLPATVLSRCAKTDVKVTNLALAQQWLESLEITNYTWLPLFYSQPL
QVKYWQEQNQLQNINTLYKFATEFKQSHNFTELVAIINKQPELIRIFTLF
LSEQLKQQLMQGMSFDAYQNVQHALNEFLQNNTKILGLNLPLAVSRLASV
LRNN
>PSHAa2424 holC, DNA polymerase III, chi subunit
MNMNAQFFVLKQQDESLAKPDDHLALAAQIAADQYRLGQRVFICVDNENT
AFAIDETLWAFDPDSFVPHNLQGEGPKGGAPVEIGTTPPVGNRKVLINLA
NNLPDFIRRFNQVFDFVPVEAVAKQAARERFKKLRQLGANITTQDINN
>PSHAa1144 hrpA, helicase, ATP-dependent
MRVVNLGQLFGELKTCLKKDQFIFKKRLHGVKKITDENKHANALEKIAAD
ITRSQALRAQRLAALPKVTYPEQLPVSQKKDVIKNAIANNQVVIIAGETG
SGKTTQIPKMCLELGRGVDGLIGHTQPRRLAARTVANRIAEEMQCELGQQ
VGFKIRFSDQVSNNTYIKLMTDGILLAEIQQDRFLNQYDTIIIDEAHERS
LNIDFILGYLKNLLPKRPDLKIIITSATIDPERFSKHFDDAPIIEVSGRT
FPVDVRYNPVTEINKEDMEAEGDQLQGIFDAVDELCAEGPGDILIFLNGE
REIRDTADALSKRNLKHTDILPLYSRLSNAEQNRIFAPHSRRHIILSTNV
AETSLTVPGIRYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRMGRC
GRVEAGICIRLYAEDDFLSRPEFTDPEILRTNLASVILQMLALGLGDMAQ
FPFVQAPDSRNISDGLTLLEELQAVHPTKRNNKTALTQSGRELSRLPVDP
RLAKMVLTAHKLGALREVIIIVAALSIQDPRERPQEKRAAANEKHGRFDD
PDSDFIAFLNLWNYLEEQQSELTNSQFRKLCQKDFLAYMRLREWQDIVYQ
ISTVCNEMGMKATSNAADGEQVHKALLSGMLSHIGFKDEKQIYKGARNSQ
FHIFPGSGLFKKSPKWLMSAELVETSKLYARTNAKIDINWVEPLAQHLVK
RSYTEPHWEKKPGAVIAFEQQTLYGLLIVNKRRCVYSNIDPKVSRELFIR
TALVEQELGLNESFLEFNRELIEDIQVLENKSRRRDILVDEQTLFEFYDK
KIPKEINNRAAFLKWYKTQKQQNKHYLQMSRDDLMQHGASSITEFDYPDT
WQQDNLILPLAYHFDPGQAVDGVAVQIPVALLNQVQESGFDWHIPAFRHE
LISGLIKSLPKSLRRNFVPAPNYADAVLAAIEPLQGSLIDALSNRLLKMT
GVRVDPDAWDLSALAAHLRLQFEVRGDNDKLLARGLDLAKLKAQLQGEVT
QTLSKVADKGIEKADLTQWDFGELPNSYVKKQGQYEIKAYPALVDKKSTA
AIELFDNEVKAQVAHQQGLRRLVLLNVPSPIKYLQQNLPNKAKLGLYFNP
FGKIADLIDDCIAAGVDSLLLKYGDIRTSDAFENVKEHIRGELGDAVVEI
ATQVEQVLSIAHALHKKMKGRVDLTMITAHGDIKSQLESLVFKGFVSQHG
ATKLSDLIRYLKAIQKRLEKLPIDPNRDRLCVLELDKVAQEYKKQANKTP
KGMPIPKEVEAIFWMQQELRVSLFAQTLGTPYPISAKRVLNAIKEIE
>PSHAa2216 hrpB, ATP-dependent helicase
MLPVQNIYQQLVITLQSNPITLLQAPPGAGKSTWLPLQLMRDGHFKRIVM
LEPRRLAARNIASYLAKCQNESVGQSVGLRIRGESKVSVNTRLEIVTEGM
LTRMLQNDPELSDVDLLIFDEFHERSIAADTSLAFALETQSALREDLTIM
LMSATLDTQRYTEFFACPVIQSNGRSYPIDEVYIPIKDESRWLDAIPTII
KQALSEQTGSALVFLPGQHEILRVQQALTDLPNNCIVATLFGEQDKANQQ
AAIAPAPEGMRKVVLTTNVAETSLTIEGIRIVIDSGKHRAATFNLKTGVT
ELTTQSISRSSAVQRAGRAGRIEPGVVYRLGSKQTFERRNSHDNPEILTS
DISQLMLEAKQWGASIEELTLLDKPTEQQGIQASNLLSMLEAIDSKGKLT
PLGSKMLGFGADIRLAHMLLKAQALEQALPGIYRLAIYLVALLESRVNTA
NELSLALHSQQQRPHPVFKQQLKYWQSRLKVKESNGDLNTEHLSLLVALA
YPDRIAKKRGSGYLLANGAGAELNRDYWHNDDYLAIATMGGHKGGRIFSA
TSLSPFELQAYLPHLFSMQTRCEFDEKTARFIHQDEVKLGAITLTSQPSA
QKLDKSERAKAWLNLFTKHGFALFNEQKDAEQLLIRMSLASKLMSEKFPK
INEQQLIQTAPQWLGVFLQDIKTLEQLKKFNYFEALQNCFDWQQQSALKS
LLPLRLTVASGSNIRIEYQLEGPAKLSVRMQEVYGMTSTPLLAQGKLPLL
MELLSPGKRSLQLTQDLAHFWNTSYRDVQKEMKGRYPKHFWPDSPATSIA
TNKVKSKM
>PSHAa1287 hupA, DNA-binding protein HU-alpha (HU-2), likely to play a role in DNA replication and in rpo translation
MNKAQLVTAMAQKSELTKKDAQAALTSLQKVITKSLAEGDQVQINGFGTF
ALSYYPARTGRNPQTGASIEIEGANKAVFKASKALKDVL
>PSHAb0462 hupB, DNA-binding protein HU-beta (NS1) (HU-1)
MNKAQLVEKIATDAEISKAAATRALDAFTGAVTSSLKEGDSVALVGFGTF
SVKERAARTGRNPQTGAEIQIAAATIPSFKAGKGLKDQVNL
>PSHAa2059 hupB, DNA-binding protein HU-beta (NS1) (HU-1)
MNKSQLIDQIAADADISKAAAGRALDSFIESVTGALKEGDSVALVGFGTF
SVRDRAARSGRNPQTGETIQIAAATIPAFKAGKALKDAVN
>PSHAa1902 ihfA, integration host factor (IHF), alpha subunit, DNA-bending protein, DNA replication
MALTKADIAEHLFEKLGINKKDAKDLVEAFFEEIRSALEKGEQIKLSGFG
NFDLRDKKERPGRNPKTGEDIPISARRVVTFRPGQKLKTRVEVGTSKAK
>PSHAa1426 ihfB, putative integration host factor (iHF), beta subunit, site-specific recombination
MTKSELIETLAQQHAHVPVKDVENAVKEILEQMAGSLSSSDRIEIRGFGS
FSLHYRAPRTGRNPKTGETVELDGKHVPHFKPGKELRDRVNESIA
>PSHAa1083 ligA, NAD-dependent DNA ligase
MASSISEQINHLRSTLEQHSYNYYVLDTPSIPDAEYDRLLQQLSALETQH
PELITADSPTQKVGGAALSKFEQVAHQVPMLSLDNAFSEDEFIAFNRRIK
ERLMSTEELTFCCEPKLDGLAVSIIYRDGVLVQAATRGDGLTGENVTQNV
KTIRNVPLKLRGSDYPAELEVRGEVFMDNAGFEKFNIEAEKRGEKVFVNP
RNAAAGSLRQLDSKITAKRPLMFYAYSTGLVADGSIAEDHYQQLEKLTDW
GLPLCPETKLVEGPQAALAYYTDILTRRGELKYEIDGVVIKINQKALQER
LGFVARAPRWAIAYKFPAQEEITKLLDVEFQVGRTGAITPVARLEPVFVG
GVTVSNATLHNGDEIARLGVKVGDTVIIRRAGDVIPQITQVVLERRPDDA
RDIEFPVTCPICDSHVEKVEGEAVARCTGGLVCPAQRKQAIKHFASRKAL
DIDGLGDKIVDQLVDRELIKTPADLFILKQGHFESLERMGPKSAKNLVTA
LQDAKATTLAKFLYSLGIREAGEATTQNLANHFLTLENVINASIDSLTQV
SDVGEIVATHVRSFFAEQHNLDVVNALVEQGINWPELTPPSAQEQPLAGL
VYVLTGTLNTLNRNDAKARLQQLGAKVSGSVSAKTDALVAGEKAGSKLTK
AQDLGIDVLTEEDLINLLEQHNG
>PSHAa1836 mfd, transcription-repair ATP-dependent coupling factor
MAFEQWAALPWVKSQKDKIQWGQLSGSGLSIAIAEGVKQQDNLVLIVTPD
TPSALRLETELEYLLPDNPVMIFPDWETLPYDHFSPHQDIISARLATLNT
LKNEQQSVLIVPVSTLMLRTAPASFIYGSTINFKVGDKLDTHNFRNNLEQ
AGYLNVQQVMEHGEYAIRGSIVDLYPMGSPHPFRLDFFDDELDSIRLFDV
ETQRSDEKVDKIELLPAHEFPTNEADIERFRIAYREKFGASAQQDSVYMQ
VSKGNWPAGIEYYMPLFFEQLATIFDYLPETTTVMQLGDLEHAADNFWHD
VNVRYENRRVDPLRPLLEPSALYQPINELFANLGNYARIRLSQAKLGTKA
GNKNLTVSELPVIRIDHKQSEPYGAFINYVAAQKKHKGRILLSVESDGRR
ESLLGVLKPSGLKFKEFTSFEQFTKSQSDVGLIVSPLEQSVVLGTKPSLS
IITEQELLGIKVSQRRRRKHKYQASQDALIRNLAELKEGQPIVHLDHGVG
RYQGLQTIDAAGIITEFVTITYASEAKLYVPVSALHMLSRYSGGEEASAP
LHKLGSDAWDKAKKRAAEKVRDVAAELLDIYAQRQAKPGNKFTLDAPAYR
QFSDSFPFEETDDQRNAIEAVLGDMQSKQAMDRLVCGDVGFGKTEVAMRA
AFVAVNDNKQVAILVPTTLLAQQHFENFKDRFADFPIEVGVLSRFNSPKE
QKDTLEKMANGKLDIVIGTHKLIQADIIFNDLGLLIVDEEHRFGVRQKEK
IKALRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAKRLAVKTFVR
QRDVELIREAVLREIKRGGQVYFLHNNVETIERVAQEISEWVPEASVTSA
HGQMREQELEQIMADFYHQKYNVLVCTTIIETGIDIPTANTIIMDRADKL
GLAQLHQLRGRVGRSHHQAYAYLLTGDPKALSKDASKRLQAIESLEDLGA
GFALATHDLEIRGAGELLGDDQSGQMQTIGFSLYMEMLEQAVKALREGKE
PTLENLLQKQTEVDLKLPALLPDDYIYDVNARLGMYKRVASCANVADMDE
LQVELIDRFGLLPDAAKNLFSLQQLKMRASDLGITKIEANPKGGYFEFSQ
NTKVNPSFIIGLIQSAPRVYKMDGANKLRFVISEANARERLKMVTAMLAD
FEKKVSH
>PSHAa0743 mutH, methyl-directed mismatch repair protein with restriction endonuclease-like domain
MRPIKPHSINDLMQRVNNIAGLTLGQLANEYNFKTPDDLLREKGWTGQLI
EYVLGATAGSKPLPDFEDLGIELKTLPISYKGKPLETTFVSVTPLINVTG
MTWHASSVRKKLNHVLWLPILSERDIAPFDRTIGSGFLWQPTPEQDALLQ
RDWEEQMELIALGRIDEISGHLGDAIQIRPKAAHSKIVTDAIGPNGKIIK
TLPRGFYLKTSFTGEILKQQFQL
>PSHAa0269 mutL, Enzyme in GATC methyl-directed mismatch repair, stimulates binding of Vsr and MutS to heteroduplex DNA
MSIEILPARLANQIAAGEVVERPASVVKELVENSLDAGATRIQIDIERGG
HKLIRIRDNGAGIAQDELTLALSRHATSKLKSLDDLENICSLGFRGEALA
SISSVSRLTLSSKTKHQEAAWQAFAQGRDMAVQVKPVAHPDGTTIEVKDL
FFNTPARRKFLRTEKTEFSHIDELIKRIALSRFDVSITLTHNEKVVRQYR
AKTDPSQAIARVAQVAGKAFAEQGLHIQSGEGGLQLHGWVLPVGSANTVQ
YTYVNNRMMRDKLILHAIRQAFEEVSGAQELPGFVIYIDIDPRQVDVNVH
PAKHEVRFHQGRLVHDFILQAIKQVVVPLQGEFTNEPLNNLADTAFSQTD
TARSPTGNFESGEVFDYPKSQLQPSHSVSSGGASLGSRSAGGSGGAYRAT
PSTNHHDINAFYQGVSEQHAAHFDQGAHVSVGVNQSHAVEQAVALKTVAI
ISINEGVCVFSSEQQLYCSHFKYALVDDWHEQIKEQGSLEGKALLLPVRV
NLSKQDCELIAAQQSWFTLLGFELIIEKQFVMVKKLPACLYLLDVTSAVE
SLLEACKAPLENIESWLAWQMQHTPARFYSSNIFLAQQARMQNNPQTIER
LRVKAVKIDIEHYLMQLD
>PSHAa0447 mutM, formamidopyrimidine DNA glycosylase
MGITPHVLNQVVTKVNIHNGSMRWPVPDDVYQLTGLTVTGVERRAKYLLL
HCALGSTILHLGMSGNLRVVSANEPLKKHDHIEFIFANGKALRLNDPRRF
GCCLWQAPGSVHKLLAKLGPEPLTDEFFAKQVYQQSRNKKVPVKQFIMNN
AIVVGVGNIYANESLFKAGIDPRREAGKVSLKSFEALIPIIKDTLAAAIT
QGGTTLKDFAQSDGKPGYFAQQLLVYGRKGQPCLVCKSELQEVRLGQRST
VFCGKCQK
>PSHAa0692 mutS, methyl-directed mismatch repair ATP-binding protein, dimer/tetramer, associates to MutL, triggers MutH activity on hemimethylated GATC
MSFDLYAPHTIKQQTPMMQQYLKIKSEHRDILLFYRMGDFYELFFDDAKR
AAQLLDISQTQRGKAGGDPIPMAGVPYHAVENYLARLVQMGESVAICEQV
GDPATSKGPVDRKVVRIVTPGTISDEALLQERQDNLLTSVWQSKNGTYGI
AYLDINSGRFNVVEVNTDEAFTSTIQRLAPAELLYSESFENVHLIEHIKG
ARRRPEWEFDLDTAQHLLCEQFGTKDLVGFGVDKAHCALVAAGCLMQYVK
DTQRIALPHIRAITLEHNEHAVILDAATRKNLELTVNLSGGFENTLAQVL
DKTATPMGSRLLKRRIHTPVRNKDELNSRLNAISAILDVQLCGELHESLR
EIGDVERVIARLALCTARPRDLTRLRSALQALAPLHTLLNDASDPRIASI
IKQSPELPDLQALLERAVIENPPVLIRDGGVIAPGYNSELDEWRNLSKGA
TDVLDQLELRERARTGISTLKIGYNRVHGFFIEVSRANAHLVPADYIRRQ
TLKNNERYIIPELKEHEDKVLGSQSKALALEKQLYEELFRFIAPHIEQLQ
IMAAALADLDVLNNLAERALTLNYAKPILCDNDNISIKQGRHPVVEQVMK
EPFIANPVELNAQRKMLIITGPNMGGKSTYMRQTALIVLMAHIGSYVPAD
SAKIGNIDRIFTRIGASDDLASGRSTFMVEMTETATILNNATAQSLVLMD
EIGRGTSTYDGLSLAYATADHLASKISAKTLFATHYFELTELAEQTPGLV
NVHLDAIEHNDTIAFMHTVLDGAASKSFGLQVAALAGVPRSVINQAKQKL
KLLENHQSVTAPNIEQQAFTFNNQAQQISPSEVELQLTAIDPDNLSPRQA
HDLLYKLKALL
>PSHAa2744 mutT, 7,8-dihydro-8-oxoguanine-triphosphatase, prefers dGTP
MTSIIVNVAVGVIKKNNALFICKRANDQHQGGLWEFPGGKIEAGESVFRA
LKRELQEEIGITIFSSSELLTIKHDYDDKTVKLNVHVVSNFSGEAHGAEG
QDNAWVSIDELDNYEFPAANVDIISAIKAKYI
>PSHAa0554 mutY, A/G-specific adenine glycosylase
MDLNKQQSDWFSNQVVDWYHLHGRKTLPWQLAKTPYKVWVSEVMLQQTQV
VTVIPYFERFMQSFPDIIALANADEDQVLHHWTGLGYYARARNLHKTAKI
VRDKYQGQFPTTLEEVIDLPGIGRSTAGAVLSLSLGQHHPILDGNVKRVL
ARFFMVEGWYGVKKVESQLWHLSEQLTPKNNVTEFNQAMMDLGSSLCSRS
RFDCPACPLSSRCGAFKTQQVKTFPHSKPKKAVPKKSCHQLIIKHDDKVL
MEKRPNSGIWGGLFGFFEFNELSELEVFIAQQGLTADLVALEPFTHIFSH
FELTINPHVLNIVQIPDVINDRQLVWYPLAQSIEVGLAAPTKKLVKQIAP
IG
>PSHAa1099 nth, endonuclease III; DNA glycosylase/apyrimidinic (AP) lyase, acts on 5-formyluracil and 5-hydroxymethyluracil
MRLSNMNKEKRHQILTRLRDDNPHPETELEYSSPFELLVAVTLSAQATDV
GVNKATRKLFPVANTPQAILDLGHDTLRDYIKTIGLFNSKAANVYKMCQI
LVDEHNSIVPENREALEALPGVGRKTANVVLNTAFGWPVIAVDTHIFRVS
NRTKLAMGKDVVAVEQKLEKVVPKEFKVDVHHWLILHGRYTCVARKPKCG
SCIIEDLCEFKEKTEE
>PSHAa0127 nudE, ADP compounds hydrolase nudE
MIKHNCHDSKLTPMTQKKHPIPPQILSNKVVAKSRLFTVESLELKFSNNE
ERQYERIRGGGRGAVMIVPLTKDNELLLVREYCAGTNDYQLGFPKGLIDP
GETPEQAANRELKEEVGFGADYLKRLKAVSIAPSHFNTTMHIMVAKQLYS
QTLPGDEPEPLVVVKWPLTDWRSLLTQDDFTEARSVAALLLLDQYLASGV
IDE
>PSHAa2591 nudF, ADP-ribose pyrophosphatase (ADP-ribose diphosphatase) (Adenosine diphosphoribose pyrophosphatase) (ADPR-PPase) (ADP-ribose phosphohydrolase) (ASPPase)
MTNKKLIEFTHQDVRLKPITNLYDGFFKINLYQFEHALFAGGESQLISRE
ILERGDAIAVLPYDPVTDTVLLIEQIRIGAIKSKHSPWLLECIAGMTDGS
EDYAAVVKKEAYEEAGLNLTELEFMLSYLSSPGGTTERLHLYLARADLSQ
VNSGVYGLETEGEDIKTHILTLDDALARLNSGEIDNAATVICLQWLALNR
DGMINKWA
>PSHAa0745 nudH, (Di)nucleoside polyphosphate hydrolase (Ap5A pyrophosphatase)
MIDAEGFRANVGIVICNNQGQVFWARRYGQHSWQFPQGGVDDGETPEQTM
YRELHEEVGLRPEDVEIVASSKHWLRYKLPKRLIRRDSSPVCIGQKQKWF
LLKLRCKDEDVNLLKTHHPEFDDWRWVSYWYPVRQVVSFKRDVYRRVMKE
FAPFAMPFNKREQQKDHWRNKR
>PSHAb0293 ogt, putative Methylated-DNA-[protein]-cysteine S-methyltransferase; O6-methylguanine-DNA methyltransferase
MIIQTLLPSPIDDIIIQGSEKGVSYVGFYPPKNYSITALSEVTNDAILCA
AAQLNEYFAKQRTTFTVPLDTQGTVFQQSVWQALLNVPYGELKTYGDIAK
VLNNPKAVRAVGAANGKNPISIIVPCHRIIGANAKLTGYAGGLARKQWLL
QHETG
>PSHAa2585 parC, DNA topoisomerase IV, subunit A
MSDTDTLLMQGIEQQTMGRFTEDAYLNYSMYVIMDRALPHVGDGLKPVQR
RIIYAMSELGLSANAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPF
SYRYPLVDGQGNWGAADDPKSFAAMRYTEARLSKFSEILLKELGQGTVDW
TPNFDGTMDEPVVLPSRLPHILLNGITGIAVGMATDIPPHNVREVASACC
LLLDKPKTELEELLTLVHAPDYPTDAEIITPKADIHKIYKTGRGSIKMRA
VYTQEQGDIVITALPHQCSGGKVLEQIAAQMNAKKLPMVADLRDESDHEN
PTRIVIIPRSNRIKAEPLMAHLFATTDLEKSYRVNLNMLGLDGRPQVKNL
LTILTEWLVFRRETVRRRLQYRLDKVLARLHILEGLLAAFLNIDEVIEII
RSEDKPKPVLMERFDLTDIQAEAILELKLRHLAKLEEFKIRGEQDELAKE
RDKLQQTLGSDRRMSTLLKKEIQEAAEIYGDDRRSPVVERLEAKALNEKD
LIPSESVTVVLSDKGWARVGKGHDLDVQGLSYRAGDAYRASARGKSNQPA
VFLDSAGRAFATDAHSLPSARSQGEPMTGRFNLSAGANFEHVVMGEDNQV
LLMASDAGYGFITDFKDLVSKNKNGKALVSVPKGGLLLSPIRVNEVASDY
CMAISNEGRMLLFPLRDLPKLGKGKGNKIISIPGAKVQAREEFVKVLAVV
PEGSSVTLHAGKRKLTLKPSDLEHYYGERGRRGNKLPRGLQRVDEAVVEF
SPQNDEPIENAIDE
>PSHAa2587 parE, DNA topoisomerase IV, subunit B
MSQQNYNAEAIEVLNGLDPVKRRPGMYTDTSRPNHLGQEVIDNSVDEAMA
GHATRIDVILHEDNSLEVSDDGRGMPIDIHPEEGIPGVELIFTKLHAGGK
FSNKNYQFSGGLHGVGISVVNALSTRVEVTVRRDAQQYRMAFENGEKVED
LSVIGVVGKRNTGTTVRFWPDVSYFDSPNYSITKLNHLLKAKAVLCPGLR
IKFVNKQTKETQEWFYETGLKDYLIEAIKGYETLPDVPFVGEFSSSIEGA
DWALIWLPEGGESIAESYVNLIPTAQGGTHVNGLRQGLLEAMREFCEFRN
LLPRGVKLTPDDIWERCSYVLSVKMQDPQFAGQTKEKLSSRSCAAFVSGV
VKDSFSLWLNEHTDIAEQLSELCISNAQRRLRAAKKVIRKRVTAGPALPG
KLTDCSAADNDRTELFLVEGDSAGGSAKQARDREFQAIMPLRGKILNTWE
VDSGQILASQEVHDISVALGIDPDSDDLTALRYNKICILADADSDGLHIA
TLLCALFVRHFKPLVKAGHVYVAMPPLFRIDIGKDVYYALDEDEKTGILA
RIEAEKKRGKVNVQRFKGLGEMNPLQLRETTMDPNTRRLVQLTLDEEELT
MEMMDMLLAKKRSADRRQWLEDHGNKAQV
>PSHAb0453 phr, putative deoxyribodipyrimidine photolyase
MNTLFWFRRDLRLFSNEALIQALNNGANHAIFFICEKQWQQHQAAPIQID
LLKRRITYLHQQLADHGITLHIIDAPYFADCETQLIDFCKANNVKHVIAN
TEYELNEVNRDKAILAKCDELSITFTLYEGDLIAPVGSVKNQSNEMYKVF
TPFKRAWLKQYIEVHFSLPQWPVEHVSGGAQLSKNETNLLKGDSSSEKWP
VDDKTLATVVDNFICDKLTSYDDHRDIPSIKGTSGLSPYLALGIISTKQL
LINIQQRYPDILSTSKSKTFTWVNELIWREFYRHLIAQFPKLSRGDNFNE
KYNAVVWRSSDDDFKAWCEGRTGYPLVDAAMRQLLQTGWMHNRLRMVVAS
FLTKHLLIDWRKGERFFMQHLIDGDLASNNGGWQWAASTGCDAQPYFRVF
NPIRQSERFDPNGEFIRKYIPELENVPDKHIHFPHSYLASLGQSDSCYWP
AIVDHKAARERALAAFKV
>PSHAa2757 polA, multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal); 3'->5' polymerase; 3'->5' exonuclease (C-terminal)
MAQIPENPLILVDGSSYLFRAYHSPPHLTNSKGEATGAIYGVINMLKSLI
RQYDPSHMVVIFDAKGKTFRNDMYSEYKANRPPMPDDLRTQIAPIHRIIK
AMGFPLISIEGVEADDVIGTFARIASEQKRHVLVSTGDKDMAQLVNEHVT
LINTMTDSISDPVTVVEKFGVGPELIIDYLALMGDKVDNIPGVEGCGPKT
AVKWLEKYGSLQGVMDNASEIKGKIGEKLAAALDHLPLSYQLATIKCDVE
VESDLDTFKLQEPNKDELIALYGECEFRRWLAELLDNPKDTETHLAVPTE
ANEVPKVAEAQYETILTESQFDALIEQLNDAELFAFDTETTSLDYMQAQL
VGMSFAVKAGEAAYLPVAHDYPGAPEQLSLEFVMQKLGPILADAKKAKVG
QNLKYDKSVLANAGYQLNGIKFDTMLESYVLNSVGTRHDMDSLALKFLGH
KNISFEDIAGKGKKQLTFNQVELDKAGPYAAEDADITLRLHQVLWPKLAA
DEKLKSVFEDIEMPLVNVISDIERTGVAIDSKMLAAHSQRLGERLLELEK
EAYEIAGEPFNLSSPKQLQVLLFEKLELPIIKKTPKGAPSTAEEVLQELA
HDYPLPKVIIEHRGLSKLKSTYTDKLPLMVNEKTQRVHTSYHQAVTATGR
LSSTDPNLQNIPIRSEEGRRIREAFIAADGYKIVAADYSQIELRIMAHLS
QDKGLLSAFANGLDVHSATAAEVFGVSLEEVTSDMRRKAKAVNFGLIYGM
SAFGLARQLDVPRHEAQHYIDKYFERFPGVLEYMETTREKAAESGYVETI
FGRRLYLPEIKAQNGARRKGAERAAINAPMQGTAADIIKKAMLSVHSWVY
EQAPNTVKLLMQVHDELVFEIKTDCVDAYTKHICELMSQAATLDVPLIVE
ADEGDNWEQAH
>PSHAa2728 priA, Primosome factor Y, also called protein n'; ATP-dependent DNA helicase activity required for recA-dependent stable DNA replication mode; also involved
MYFVEVAIKVPLPRTFDYKVDSQLGEASAPLKPGMRVLVPFGNQRKVAVV
LALKTTTEVPENKIKAIFEIIDDTPILSAEHIELLRFTARYYCYPLGETI
HIALPSALRQGESPDKTSINMVALTEKGALLPSLKAKTQLNLLKQLSQSG
KSSLTELKALGFSKKTIDSLIDKALITQSIEHDNHWQSVAPTVGSKPTLN
KEQAVACTTINQSSGFSSFLLEGVTGSGKTEVYLQCLEEVLKRGEQALVL
VPEIGLTPQTVNRFRRRFPDTPIMLWHSALTDNERLQTWRFCEKASCAIV
IGTRSSIFLPFLKLGMIVVDEEHDSSFKQQDTLRYHARDLAAYRAYQHKI
PLILGSATPALETLHKAINNKYQLLSLTERAQTATDNQFKLLDMKGQPDQ
AGIAHASLATMRQHLKRGKQVMVFLNRRGFSPTLICHECGWLSECKRCST
SATFHKAIGQMICHHCGDQYHVPHQCPDCGSTQIFPNGKGTEQIEEFLSS
EFPQTPVTRIDRDSTRRKGSLEKALDEINLGGARILVGTQMLAKGHHFAD
VSLVVILDVDSGLYSCDFRATEHLAQLVTQVAGRAGRSGEAGQVLLQTHF
PEHPLLQDLVNNGYQDFARFALREREDADLPPITNMAIVRAQGHNIKQVV
DFLTDLVPVSGVTGIQLLGPIPAPLEKVAGMYRFQLHIQAQDRRVLHQYL
AQMVDYLSTSKLAQKVRWSLDVDPIDMI
>PSHAa2441 priB, primosomal replication protein N
MNQLVLSGVVCKTPKLSQSPAGIPHCIFVIEHKSMQTEADLNRNSYVRLQ
VVASGKQMQQQTQHLHVGQALQVSGFLNRHEGRNGLSQLVLHAQHIERII
>PSHAa2643 radC, associated with replication fork DNA repair protein
MQLTSLPNSQRPREKLIEKGAKALSDAELLAIFLRTGLPGMNVIELAQHL
LNENKTLHNLFNASMEEFCAQKGLGTAKYVQLQAVLELSQRYMQERCQRD
AIFNSPNAVYDYLTLQMRGLQQEVFMVLYLDSQNRLIKDEILFYGTINSA
SVYPREVVKAALKNNAAAVIFAHNHPSGIAEPSQADKLITNKLQQALQLV
DINVLDHIIVGGETCVSFAERGLI
>PSHAa1714 rarA, putative polynucleotide enzyme with nucleotide triphosphate hydrolase domain
MSNLGFNFGPDVRPLAARMRPTTLDEYIGQQHLLSADKPLHQAIVAGRCH
SLILWGPPGVGKTTLAQIIANHADAALIQMSAVTAGVKDIRDSVTQAREN
LQSRGQRTLMFVDEVHRFNKSQQDAFLPHIEDGTFIFVGATTENPSFALN
NAILSRARVYVLKSLANTDLYTVIDRALKQDEQLNQKHIIIADNAKKALC
QASGGDARKVLNLLEQAVDLTTEQNGQYNVDEHVLSQVLPTHLAKYDKGG
DEFYDLISAFHKSVRGSSPDGALYWYCRILAGGGDPLYVARRLLAIATED
IGNADPRAMEVALNAWDIFQRVGPSEGERAIAQATLYLASAPKSNAVYMA
FNQAKADAQNEPSYPVPEHLRNAPTNLMKDLGYGAEYRYAHNEEGAFAAG
EKYLPPEMQGREYYSPSDRGLEQKIKQKLDYLKERDAQSPLKRYEND
>PSHAa2381 rdgC, nucleoid-associated protein
MWFSNLICYRFKQDVSYTQEDFDKALEQDLFRPCTGQELATFGWTKAFGK
HGETLSHFSQKSILVCAKREEKVLPASVINELVAEKVDLIEAEENRPVKK
KEKDELKENILHTLLPQAFKKSSLQFAFIDQENGWVVVNSGSFNKAEELL
ALLRKSLGTLPVVPAFANYDLDVFLTDWLTNFSTPEGFAIGSDAELEEAD
DSGAQVKLKGHDLSCDEVKSHLETGKRVTKLALDWQERVKFMLQNDGSIK
RLSYSDTLKEENADIPKEDMAVKLDADFILASEEIKQLLEELTQGLGDID
DLA
>PSHAa0694 recA, RecA protein (Recombinase A)
MNDNKQKALDAALSQIERQFGKGSIMKLGDNKALNIESVSTGSLGIDIAL
GIGGLPMGRIVEVYGPESSGKTTLTLQVIAEAQKEGKTCAFIDAEHALDP
VYAQKLGVNIDELFVSQPDTGEQALEICDMLVRSSAVDVVIIDSVAALTP
KAEIEGDMGDSHMGLQARLMSQALRKLTGNIKRSNTLCIFINQIRMKIGV
MFGNPETTTGGNALKFYASVRIDIRRIGSVKEGDEVVGNETRVKIVKNKV
APPFKQAEFIIMYGEGISKQGELIDLGVKHKIVEKAGAWYSYCGNKVGQG
KSNSIKFLKENPEIADEIEGKLREMLLLKATIEPDDGEDKLGDEADL
>PSHAa1858 recB, exonuclease V, beta chain with recC and recD: 5' and 3' nuclease, ATPase, recombinase, helicase
MQALNPLTMPLTGQSLIEASAGTGKTYTITGLYLRYLLGMQIADDANSLL
NKPLSVEQILVVTFTDAATQEIKDRVRNRIITARDALLGQDPKDELIAGV
IAAVDDKHRAFDLLDAAAKSMDEAAIFTIHGFCQRMLKQHAFESGVAFNL
EFILDERDILLETIKDFWRAFVYPLNKEKTDAILGVFAAPEALFGKVSSI
LNKANAQITPQVNLDDVWQARDEYIIRVPAFKKAVLEQEFIAAIKGSGLS
GSKTPGRKGSLAALEAFCLGGDLFFEFGTSKYSFEVWSSENLSDISNYKK
NQPLFTHPLLTEFDQLAALNNTINQGLAIAVVQHAAKWVKAAVIKRKQEQ
SVITPDDLLSNLHSALNNEQGNVLAQKIAQLFPVAMIDEFQDTDPIQYGI
FSKIYQQEHTTLAMIGDPKQAIYGFRGADIFTYIGAKEAVQKQQQFTLGT
NFRSSSDVVSSVNSLFGKHANSFIYNDAIPFNAVAAKGKKADESFLIDGQ
PATAFEFCVFSDTAADEKNKPTGKAIGQQHLATFFANKIVTLLTQAEQGR
ACIGEKPVSAADICILVRDRVEAQIMKKALSTAKIASVYLSRESVFSQEL
SHHLLNFLTALHGQYDESLLRGVLAGPLFCLSYNEIYALADDEAQWQEHL
NFFAQLSHIWNKQGAMAMLERLMSHNQLSAKWQGLGYNVERWLTDFRHLG
EILQQKQIELEGTLRLLRWFAQKVSQQDGETVQVRLESDANLVKIVTMHA
SKGLEYPLVFMPFASGYRETKEALYHNNGALIYDLSKGDDALQKAEQERL
AEDLRLLYVALTRAVHFCAIGMYNIGQGQSSRLAIQSSALGHVLFAGLEI
TSSQIWRNHLADFCSEHTGMDYQQFTSEDLLAQGTLSFNNSADAQQTLSI
NNVTANIERNWRATSFSALSFKKHIDHLAPGRSDEDHEKDEFAVQEGEAP
SVYSFPKGAKPGSCLHEIFEQIDFTSPIEHPVNKEHNLAEVIKRSLEKYH
ISEHWQDITEQWILDVLACPLNDDSNANINTSGNDTSANSSSVNSNGLSL
SQLAPSDCLVEMEFNLPLKSLSAPQLNEILIKHFGFEHSKLEFSHVKGLL
KGFIDLIFCHQGKYYILDYKSNYLGSNAADYEHDMLEQAMSSHQYHLQYL
IYTVALHRLLKQRIADYSVETHLGGVYYTFLRGMPAGQGVYFKKLTTEQV
TILDGLFSQGAML
>PSHAa1859 recC, exonuclease V, gamma chain with recB and recD: 5' and 3' nuclease, ATPase, recombinase, helicase
MLNIIQSNRMEALQAQFHQLLKTNPLASPFDKEVVLVQSPGMSQWLKIGL
SENLGVAAQVDFPLPSSFIWQLYQQLLPNVPKESAFNKPNLAWKLFAILP
SCIDEPLYLPLKTYLEGDIDGQKTFALCEKIADVYDQYLMYRPHWIATWD
SGIDELDDVDVTIAPWQPDLWRRIVQLSLELGQSQFHRANMQGQLLAALE
TMDNSLLPQRISLFGISAIASSQLEVFTALSEKTEVFLFFFNPSEHYWGD
IIDEKTAAKISAKYAKMPLVEAQQKKQTNPDEEYYFIGNPLLSSWGKLGR
DYFEQLVQLDARWIDGFIDVFDDTLLGQIQSEIYQLAFKGESLTDNKEWF
INDEGKLPISATDTSITLSDCHTPLREVERLHDYLLNLFNQNPALTPKDI
IVMMPDVGTYSPYIEAVFGGAQGSRFIPYALADLAIEQENPVLSSFASLA
NLPFSRFGVSDILDLLQVTQIAEKFGLEAHEYEQIQYWLERVGVKWGINA
DHKSSFDLPAIDLNTWQHGLNRLLLGIAMRDEQCPFNGIYSADEVEGMAL
DTLNKLVHFIDVLQSFKEQLTPDDTLTNKAHVLSELLSAIYESESDDSWD
LLVLQNVLEELQKHHNNGDYSKAVSQRIVSYLIKQGIQEKGVGQRFLVGQ
VNFCTLMPMRAVPFKVVCMLGLNDADYPRNVQPIGFDLVPYSKKQKGDRS
RKLDDRYLFLEALLSARDNLYMSYIGRSCFDNQPRMPSTLVSELLEYIGR
SFALSDDSEKTLPECLISQQHLQPFNSHYYLANEQANTVLSNHSYNPIWL
PSESITPQVVSALNATPPEQLELDVFIRSVCNAQESFYQQSLGLRLPQFN
EVVKDEEPFSLDALRRYFYLDEILEANINELPLSTEQILQRGELPQANVG
SLIFESMQHRVDALAGQVKEQIKGGKSDPIEVALELENTKIEGWLNHIYL
QKQVFYRSASIKAKDLIKGFIYHLVAQSMEQQVETLILGLDKQVTFAPIS
KTDADALLVDWFELYKALRNEPVAFFPVSGYEYVKSGGDIAKAMSKFSPQ
YIGRGEGENPYIRLTVQSLNDCQDEFIQWSDKLLAPLFAHAKESDHASA
>PSHAa1857 recD, exonuclease V, alpha chain with recC and recD: 5' and 3' nuclease, ATPase, recombinase, helicase
MSELNNQPGLFDQEFEQGLDQELELNEQNPTLSTAVPLLTYLLSENRIRI
VDVKLAEMLSKSNSDSENTHNEMFYLVLLLCLSQQSQHSCLTLSEVDWSN
PFNLRRSDFSKTQGSVPDKLSPFSEGFNYEQVLSYLQNHTSVGANKPLQL
FNQRLYFARLAGYEQTLASRLITMSERTLNINNELLAALLNEYFTPDANI
ATDWQKVACAIAATKGFSVITGGPGTGKTTTVTKLLAILQSLYKTAPLSI
KLVAPTGKAAARLSESILGAKDKLTNIPADIRTLIPESAQTIHRLLGVKP
FTNKFRHNKANPLHLDVLIIDEASMVDLSLMAKLIEALPAHARLILLGDK
DQLASVDTGSVMSDLCQGLVLGQTPGYSPARCDELNNLCFNGEAKLIAQS
NSAFKLADCIAFLQHSYRFDAQSGIGQLALAVNTNNTGVLNYVEQESVEG
RFKDVILDYDFIAKPIEKLVKSAASKYTHYLSLIAQGASVAEVHKAFASY
QLLAAVREGDYGVNSLNQRIERVLQQQGLITLSPNQRHYTGMPIMVSQND
YQLKLFNGDIGILMPDESGQLKALFIDEQGNQRAFSPARLPAHDKVYVMT
IHKSQGSEFSYTAMVLPPLKQARMGINRQLVYTGITRAKNTFELVADKKV
LLLAMNKSVSRASGLYERLVN
>PSHAa0003 recF, gap repair protein with nucleoside triP hydrolase domain, part of RecFOR complex that targets RecA to ssDNA-dsDNA junction
MSLSHLSLKYFRNIEALTLEPVNGVNIIYGENGSGKTSLLEAIYYLSHGK
SFRTSKHKSIIAHQQEQFVIHGRKAIHDLSIPIGISKTQAGETNLKIQGK
ASRKISELAQLMPVQIITPESYSLFFGGPKERRKFLDLGLFHVEHEFFFL
WQSFNKVLKQRNALLKSKPKNYFDQIKFWDKEFVRLAEQINKLRMAYISR
FKQQFFDKMCAELTLIRDLEISFNAGWKESESLSDALELNFERDARQGFT
SKGPHKADFSFSVAGSSVENIFSRGQLKLLLYALKVTQNSLIESETDKQS
ILLIDDLPSELSEDTKEKVGQLLAHCSSQIFISSILSESISAVVEPMQRE
LQMFHVKHGNLITR
>PSHAa2799 recG, ATP-dependent DNA helicase recG
MAERLLKLGISTVQDMLFHLPLRYEDRTRLYTINELSLHSHVSVEATIET
SQITFGKRRMLVCQINDGTGRLTLRFFNFTAAQKNALSAGKIIRCFGEVR
RGRVGFEMNHPEYSISDTPNEQPTATTLTPVYSTTEGLKQLSIRALSDQA
INLLQKYSVEELLPAQWQPSNLGLSDALLLLHRPPKDIDVIALEQGTHPA
QQRLVFEELLAQNLSLLKIRQQGQQVKAVSLNSNNALESQFLAQLPFDPT
NAQSRVVAEIKGDLQQPYPMMRLVQGDVGSGKTLVAALSALTAIAQGFQV
ALMAPTEILSEQHGINFNNWFNQLGITVAWLGGKTKGRERVATLEKIASG
EAQMIVGTHALFQDEVKFHNLVLIIIDEQHRFGVHQRLSLREKGRFGDCY
PHQLVMTATPIPRTLAMTAYADLETSVIDELPPGRTPITTVALPDTRRGD
IIKRVKLACHEQGRQVYWVCTLIDESEVLQCQAAEDSAQQLKEALPELNV
SLIHGRMKATEKQAIMSEFKAGNIHVLVATTVIEVGVDVPNASLIIIENP
ERLGLAQLHQLRGRVGRGATASHCVLLYHAPLSHTAQKRLGVLRDSNDGF
VIAERDLEIRGPGEVLGTKQTGLAEFKIADLTRDKHTLNQVRPIAQQMLI
QHPKQVDALISRWLGNKSNYALA
>PSHAa0516 recJ, Single-stranded-DNA-specific exonuclease, 5'--> 3'-specific
MKKTIQTRENVDDSHLPSHLHPVIKQIYATRNVSHADELNNSAATLHDFK
LFKDMDKACDLLIEALHAQSHILIVGDFDADGATSTATLMQGLAMFGFAH
LDYLVPDRFSLGYGLSPALAAQIVQLKPDLVITVDNGISCIAGIDIVKAA
NIKVLVTDHHLQGETLPNADAIVNPNRHDCSFPSKSIAGVGVAFYLLIAL
RSTLREQNHFAQQPMPNLADLLDIVALGTVADVVALDANNRTLVHQGLAR
IRSGKTRPGITALIEVANRNASRLSASDFGFSLAPRLNAAGRLDDMSLGI
ACLLSTDINQARRIASELDSLNFARREIEQGMQHEAQAVLDKLAFNDDNI
PDAICLYQEDWHQGVIGILAGRLKEKYHRPTVIFAGGENGEIKGSCRSIE
GLHIRDLLEGLSTADPHLISKFGGHAMAAGLSINEQQFSEFKHAFDTAVS
AQLSEESKRCIVFTDGELPNECFTMDFAQQLKQAGPWGQQFPEPVFEHTF
ELIQQRIVGEKHLKLVLKHQSGRLVDAIAFGIDVKEWPDNNAQFVKAAYQ
LDINEFRGKFTLQLIIRELEKAS
>PSHAa1218 recN, DNA repair protein recN
MLIGLEIKNFAIVSNLSTEWQNGMTAITGETGAGKSIAIDALSLCLGERA
EASAVRPNTDKAEVCAQFDLSNLPLAHAFLEQNMLSNADNECLLRRVVCK
NGRSKSYINGSAVTAAQLKELGQYLISIHGQHAHQHLLKAEHQLQLLDAY
AGHHNLVSGVSQSYKQFANLQKEFKHLQQQQQQQAAQKQLLEYQVAELNE
FALQEGEFEQIEAEHYKLSNSQTILETCQRELQHLYESDEQNACSLLQHS
AQQFSELAQYDETLASVATLLAEAAVQVEEASREVRSYTEQADLDPARLV
EVENRLSGAMDLARKHHIKPQALVEFHQAISQELESISNNSSRLEQLESE
IENTLSHYQHASEQLSQSRREYANTLNRLISNSMANLSMENGIFEIALTQ
ETERAPNSLGYDNVSFLVSTNPGQPLQPLAKVASGGELSRISLAIQVIIA
QKVTTPTLIFDEVDVGISGPTASAVGKLLRQLGKSTQVICVTHLPQVASS
AHQQFFVAKEIANGETFTHMQPLNKDGRVNEIARLLGGDNISKTAKANAK
ELIMAHA
>PSHAa0734 recO, DNA repair protein recO (Recombination protein O)
MDSDFYRAYLLHRRPYSDSQVMLDMLVEGVGQLRMLARISGRQATKHKAQ
LQPFQALLVHYNGKYDLKYINKFELHGTPLFLKGDELYCGFYLNELTNRI
VPINEPIDQVFQLYNTHLKNLNSGANLQAVLRSYEFQLLELLGYGVDFSF
DASGEPIDEKRTYSYFAEVGFLVQDDPRSGFSGLQLNAIANHDFSQADVL
YMAKQLSRYLLKPLLGNKPLKSRELFAASQ
>PSHAa2572 recQ, ATP-dependent DNA helicase
MNTLTPPSSSLVRTPEAVLKQVFGYSEFRDGQKTVIDAAINGQDSLVLLP
TGGGKSVCYQIPALVLEGVTIVISPLISLMQDQVTQLQALGVKAAYINNS
LAREEQQQVYQQLHQGLIKLLYVAPEKVLQREFLERLSHLKISLFAIDEA
HCVSHWGHDFRPHYFRLSELKQRFAHVPMMALTATADKATRFDIVEQLKL
QQPYIHTGSFDRPNIRYTIEEKFKPMVQLLRYLKEQKSQSGIIYCTSRKR
VDDIAEKLADAGLNAAAYHAGMSNEQRQFVQTGFARDDIQIVVATVAFGM
GINKPNVRFVLHYDIPKSIESYYQETGRAGRDGLAAEAIMYFDPADIGRV
RRFFEDIDDEQRRRVEEQRFNAMASFAEAQTCRRQILLNYFSEYQREPCG
NCDICLNPPKSFDGTLVAQQALSCVYRAEQRFGLGYIVELLRGANTSRIR
DNNHHQLSTYGIGKDKSSEFWLSILRQLIHQGLLSQDITQGASLRLTEAA
RAILKSEYALQLAEPRLQAKHVYQDKLAQFNYDKKLFARLRALRKELADA
DDVPPYVVFNDKTLAEMAQLMPTNDSEFLKVSGVGFTKLNKYGGEFLTAI
RNYLATN
>PSHAa1203 recR, recombination protein recR
MQLSASLTQLIEALRCQPGIGPKSAQRIAFHLLERDRKGGTQLGNALTKA
MTAVGHCESCRTFCEQSQCDICLSTKRQDSGILCVVESPSDVLAIEQTGQ
YLGLYFVLMGHLSPIDGIGPKEIGLDVLETKLAQSGISEVILATNPTVEG
ETTAHYIAQLCHKYKVGASRIAHGIPVGGELDLVDGTTLMHAFSGRRAVT
QD
>PSHAa2762 rep, Rep helicase, a single-stranded DNA-dependent ATPase
MLAGAGSGKTRVITNKIAYLVKKCEYKARNIAAVTFTNKAAKEMRERVLQ
TLGKQDAKGLWVSTFHTLGLEIIKKELSTLGFKPGFSLFDDQDTNQLLND
LTEDELKNDKDLLKLLKMAIGSWKNELILPEQAIREAREPQKALFAQLYG
RYQNQLRAYNALDFDDLIMIPTLLLTNNATSRMRWQQRFKYLLVDEYQDT
NTSQYQLVKLLVGERARFTVVGDDDQSIYSWRGARPQNLVLLSKDFPGLR
LIKLEQNYRSAGRILKAANILIANNPHDIEKKLFSELGYGEPIKVIGCRD
EEHESERVVAEIISHKFMKRTSYKDYAILYRGNHQARGFEKSLMSNRIPY
KISGGMSFFSRSEIKDIMAYLRLLVNQDDDNAFLRIVNTPRREIGTVTLE
KLGTLANEKHMSLFATCFDNDLGYRLKGRGLNALTGFARWVVELSDNAVR
GDTLEAVKDLVRNINYEAYLYESSPSAKAAEMRMKNVSELYRWITDMLTG
DADNEPMTLAEVVSKLTLRDMLERNEEEDEADAVQLSTLHASKGLEYPYV
FMVGMEEGLLPHQVSIDEDNVDEERRLAYVGITRAQQELTLTYAKIRRQF
GETSQTELSRFVQELPQDDLAFENKKAPNSQAERMEKGQARVANLRAMLK
KPE
>PSHAa0114 rhlB, ATP-dependent RNA helicase with nucleoside triP hydrolase domain, putative cold-shock protein
MTDKKFSDFAIAPEVVAGLTESGFEYCTPIQAKCLPFICEGRDIAGQAQT
GTGKTLAFLTATCHRLLQSSKAPSKHPRALIMAPTRELAIQIHKDAKILA
PHCNLNLGLVYGGEDYEKQRAQLEKGVDILIGTTGRLIDLYKQGCYTLNE
IEVVVLDEADRMFDLGFIKDIRYMFHRMPDTSKRLNLLFSATLSYRVQEL
AFEHMTNPEHVQIEPDVKTGKRIQEELFHPSQEDKIKLLLTLIEEEWPEK
AIIFANTKHSCETVYAWLKADGHRVGMLTGDVNQKKRQSILAEFSKGDLD
FLVATDVAARGLHIPEVSHVFNFDLPDDCEDYVHRIGRTARAGASGHAIS
FACEQYAYNLHEIEEYIDHSIPLSHYDKTALLDDLTKPTIHRKRNFSTGP
RNRSNNSGRRPNNSYQKGRS
>PSHAa1930 rhlE, putative ATP-dependent RNA helicase with P-loop hydrolase domain
MSFEGLGLSQSLVNAVLEKGYETPTPIQAQAIPAIIERRDVMAAAQTGTG
KTAGFTLPLIERLSSGPKAKSNHVRALILTPTRELALQVSENVEEYAKHS
NVSSFVVYGGVKINPQMQRLRKGVDILVATPGRLIDLHNQNAVKFDSVEV
LVLDEADRMLDMGFIHDIKRLIAKMPAKRQNLMFSATFSDEIRALAKGLI
NDPVEISVAAKNTTAKSVTQCVYAVDKPRKTALLSHLIRTNDWQQVLVFS
RTKHGANRLVKQLERDDIVGAAIHGNKSQGARVKALDGFKSGEVRVLVAT
DIVARGLDIVELPHVVNYDLPNVYEDYVHRIGRTGRAGASGHAISFVTTE
DAVDLYGIERFIGELIPRATEEGFEPVNPVPERDLDARPIAPKKAKKTNQ
PFNKPKSDSSKPNNKKPNNGGNGTGARRGGSKKPVAKTDDKAQSPWAKRE
SVGGNTQRRRRPSNND
>PSHAa2983 rhlE, DEAD-box protein family; putative ATP-dependent RNA helicase with P-loop hydrolase domain
MTSATSPSTFSELGLIPELLARLTDLEYTQPTPIQAKAIPSVLAGSDLIA
GANTGSGKTATFALPILQKMFLEQGSKSAASKGNFVTGLILVPTRELATQ
VADSVKSYSANFNGAIKTIAVFGGVSVNTQMQALRGGADIIVATPGRLLD
LISSNAIKLDKLNTLVLDEADRMLSLGFTEELAELLALMPAKKQTMLFSA
TFPEQVKLLTQDLLNDPVEIQVQSKDESTLVQRVFSVNKGEKTTVLAHLI
KTHKWRQALIFVNAKKDCEHLAQKLEKRGVNAQVFHGDKGQSERTRVIEK
FKAGEIEVLIATDIAARGLDIEKLPVVINFNLPRSPADYMHRIGRSGRAG
EVGLALSLVDYEDLHHFKIIEKKNKLRLEREQVAGFAVNQANVDAAQALK
NEKPMAKPEGTGKKKNKKADLEDDVWAGWRGKSK
>PSHAb0411 rhlE, putative ATP-dependent RNA helicase with P-loop hydrolase domain; DEAD-box protein family
MNFKSFSFAPELVQALDELNYHTLTPIQRAAIPAVRKGKDVLASAQTGTG
KTAAFALPIIQKLFESEVSTTNAPHALVLAPTRELAEQIANNFKDFAKHT
SLKVVSLFGGVNTAGQANALKEGVDIVVATPGRLLDHIRLGNLSLASVKH
LVLDEADRMLDMGFIEEMQGVIKSCADDRQILLFSATFPAAIKQFASKVL
KQPEIVRVDQTNSTASTVAHVVYPVEERRKQELLSELIGKKNWQQVLVFV
NMKETADELVTELNLDGIPAAVCHGDKSQGNRRRALREFKEGKVRVLVAT
EVAARGIDIDGLPRVINIDLPWLAEDYVHRIGRTGRAGKEGQAISFVSRE
EENMLFEIETLIGQKIKRVYLEGYAVSNREVLIDKIGKKPAHLRRTRANK
PSGQATGEARAVNRSRISKIRKSLKGEKLSLKK
>PSHAa1964 rnhA, RNase HI, degrades RNA of DNA-RNA hybrids
MEKTVEIYTDGSCLGNPGPGGYGIFMIYNEHEKKLSQGYKLTTNNRMEML
GAIVALEVLTRPCVINITTDSQYVKQGIESWITNWKKRGWLTSAKKPVKN
VDLWKRLDLACAKHTVTWKWVKGHSGHKYNEIVDDLARDAAGSKDLLDDV
GYQP
>PSHAa2016 rnhB, RNAse HII
MQIERPNVALIAGVDEVGRGPLVGDVVTAAVILDPSKPIAGLADSKKLTD
KKRQALAIEIQEKALCYAYGRCSPTEIDELNILHATMLAMTRAVEGLSTQ
PEFVFIDGNRLPKLTMPAQAIVKGDSLVAEISAASILAKVARDNEMVELD
KRHPEYGFAGHKGYPTKAHFAALEQYGAIKEHRKSFKPVQRVLAQAKGEA
>PSHAa2114 rnt, RNase T, degrades tRNA, has exonuclease and ssDNAse activity
MANTEQTLFAKRFRGFFPVVIDVETGGFNKDTDALLEIAVSVLKMDDEGL
LSIDHTVHFHVEPFADANIEQAAIEFNGIDPFSALRGAVPEEHAIKEICK
VVRKAQKAAGCQRSVVVAHNAAFDHGFLNAAIERNNIKRTPFHPFVSFDT
TSLAGLALGQTVLAKACRAAGIEFDNSQAHSALYDTERTAELYCLIVNRW
QQLGGWPLAPLENTDTELQVDDIDSDDAKTSE
>PSHAa1876 ruvA, Holliday junction helicase, subunit A
MIGRLNGILVEKQPPEILLEVSGVGYEVQMPMTCFYDLPKVGESAIVYTH
FVVREDAQLLFGFNNKVERALFRELLKANGVGPKLGLAILSGMSAQQFVS
CVNNEDSTSLVKLPGVGKKTAERLVLEMKDRLKNWGNDLFTPFSDSAVIE
PFSDATIANNAADDAVSALVSLGYKLPQAQKAVKSVSKPDMSTEVLIKES
LKSML
>PSHAa1875 ruvB, Holliday junction helicase, subunit B
MIEADRLIDATEKPNEDSIDRAIRPKLLADYRGQPHVKQQMEIFIEAARS
RGEALDHLLIFGPPGLGKTTLANIVANELQVNIKATSGPVLEKAGDLAAL
LTNLEEGDVLFIDEIHRLSPQVEEILYPAMEDYQLDIMIGEGPAARSIKL
DLPSFTLIGATTRAGSLTSPLRDRFGIVQRLEFYSVEDLSYIVGRSAHFL
DLEMCDEGAVEIAKRSRGTPRIANRLLRRVRDYTQVKSDGTVNAEVAELA
LNMIDVDKSGFDYMDRKYLLAIIEKFMGGPVGLDNIAAAIGEEKETIEDV
IEPFLIQQGFIQRTPRGRIVSDNAYHHFGLLPKQD
>PSHAa1877 ruvC, Holliday junction nuclease
MAIILGIDPGSRLTGYGVVAHQGSKFTYLGSGCIKLADHEFHIRLKMIYQ
GITQLIEQFSPETFAIEKVFMAHNPDSALKLGQARGAAIVGAAMADLPVF
EYSARQIKQAVVGNGGADKTQVQHMVKNILKLPGTPQADAADALAIAICH
AHSEQNLIKLAGSASKTVRGRLRK
>PSHAa1255 sbcB, exodeoxyribonuclease I
MAYQEQNQATIYWHDYETWGASPQKDKPSQFAGVRTDLDLNIIGEPLIEY
CKPQADYLPHPEACLITGITPQVAMKKGLVEAEFIAKIHAQFSVPNTCVA
GYNSIRFDDEVSRYSFYRNFYDPYEREYKNNNSRWDIIDLVRACYALRPE
GIEWPLKEDGSPSFKLEHLTVANGIEHAAAHDALSDVTATIALAKLIKDK
QPKLYNFFFSLRGKKALAELVDVFNMTPLVHTSSRIPATQGCTSWVAPMS
FHPVNKNAVICFDLTQSPQVLIDLSVEQLRKRLYTKRIDLAEDELPVGLK
LVHLNKCPILAPAKTLLPENAARLGIDREQCLKNLAVLKANSELRDKVTE
VFNEQGDYSATTNVDYLLYDGFTSHADKAKFAIIRDAKPEDLADLKLDFE
NKKFNTLLFRYRARNWPQTLNQQELDQWRQYCQNKLMHGEDQPSINAQDF
MITLENLAHEHDDSEKNLTILKALYNYAQSM
>PSHAb0054 sbcC, exonuclease sbcCD subunit C
MKITAVRIHNLASIVDAEIDFLAAPLKDAGLFAITGDTGAGKSTILDAIC
LALYAKTARLGGDRGNKVEFQGDSIRLNDARNLLRRGTSNGYAEVDFVGQ
DKESYRACWSVNRSRGKSDGNLQAAQHTLHLLPDDTLISSDKSKTVKQIE
AKIGLTFDQFSRAVLLAQHEFAAFLKATGDERAQLLECLTGTDKFSRIGV
RIFERNKELKEKFELLQASLASYTLLSEDELAAKQTSLNELKLQIEHTKK
TLTTTEQNLNWYKQANTLEQALKQAQQNQQQAQNELNAIAQQSEQAKQAQ
SALEIKDNRSRFKSLTAQNIELNTKVSDLKSIDHTAIITAHANTLSKHQE
ILQTAKEQKQTAEPIIAKARELDSQLAIQAQTIANLTQQSEKEQLQLNDL
QQQFKQSQSVLDEATKLSAQHQQWLTTHTQLKPLANDWNYYQHSFNQFLN
ATEQLKTTAHQNQKLVAEQAKQATLLTAQNAKVESQEQLLASEQKNLNQL
NEQQRQFNIEQCDAKLKNIDYLKDQRERYKQFNHELKYSTQQQTRVAEKL
IQSEQAQNALLQNLASCEQTLKHNEYTLSQARLRASENVEHLRTQLAPNE
PCLVCGATEHPYASTQNQQLNNLIADFETAYNNAKQQRDSAQTQLHQHQT
QHAVLVAEQTQHSQAIQIAQAKQLEIKTTMQDARTELNDLTTEKLDETYK
QLSEQKTQYFAVQTQLRTLQEKVNQQLNALKTEQHAQQQLQNQHVELTNQ
LNQLSSKHNELSVQINELSAALNAQFEHSDFWQQLQSESLTLSDLNKQVE
QYQQTLTQLEQSQKQLDSANQQLQQLTPLITKSDHALKALNDDLAKAQQQ
QNITQSQRLALFNNEQISASDYQTKLAMQLEQCQTQLNASQQAHDNAIKQ
RDEHAITLKNVEQRLQEHAQELTSLEARYLEWFTDFKAQHSDASHEQVTI
LLTLSSEQIKAHLKQFEQVSQTLTDTNAALKQQQKSYTEHQNTDKPSKNH
DELTEQLNVLNTQQTELQNSLLATNTAIEQHNQNAKTLKGKQAELTTLKT
QVDQWHLLNKVLGDATGKTMRNLAQTQTLKILLHYANSHLKTLNKRYELT
AIEHSLDIAIIDRDMADEQRSVNTLSGGESFLVSLALALGLASLSSNKVQ
INSLFIDEGFGTLDSETLSVAMDALDSLQAQGRKVGVISHVSEMSERVAT
QVHVAKKPGGYSSVEIV
>PSHAb0055 sbcD, exonuclease sbcCD subunit D
MKVLHTSDWHLGQQFYEYDRRHEHLAFFTWLLATLVEQQIDLLLVAGDIY
HTATPSASAENQLYQFIKDAKKQCPNLHVVIIAGNHDSANRILAAQPLLA
QFDTHVVGRFEATAAADTVITINTNKKRAVIVAMPFLRASDVTTLSQTKS
GPSYAQGVKKAYELALEHAATLQSENTPLIVMGHLHAKGGDISSDSERNL
VIGGEEAISANVFGKQAHYVALGHLHKAQQVAKNECIRYSGTPIPMSFSE
RNYSHQVNVVEFNSDEKQQISVTVNPLYIPRLADVIVLPKGECVPLAELC
EEIKALDTTANTIAPYLRVKLKSSDTDTTFREQIEQALEGKHIRFCGIER
VREQAANNEGGAVFEDLTEVEMLNPLNLLEQAFANDKDMHGESVPDALKN
LLNDVINELEEQQQL
>PSHAa1635 seqA, SeqA protein, recognizes hemimethylated GATC motifs; negative modulator of replication initiation; SeqA foci required for chromosome segregation
MKQIDIDDELYQYIASNTQSIGESASTILRRLLNLSGEKIQTANVELNQN
NQTTTTLPKVPPVAEQTPALAAKPSAVAEKSVQQKNANVFNVLNKEELAM
QKGVVGRFLFILSAFYRTHKTDFRAVLDIKGRDRVYFATSKEDLVNSGSS
MNPKNITDSEYWVMTNSNTTRKKMMLHEVALCLGYSTEQAEKIRDYL
>PSHAa0025 smf, conserved protein of unknown function ; Smf protein
MDQSSGKLAHWLAFYMCKGLGIKTLLALSKNHSLESLFGLSHQQLLQLGL
SANQATNLLHTNWQQITHYEQLILHNNITVISIFDAAYPEDLKQIASAPL
LLFCKGDVSFLTSPQIAIVGSRNATPTGLEIAAEFAYQLTLAGITITSGM
ARGIDGAAHKGALAGSGKTIAVLGTGVDIYYPKQHKLLTNQVLEQGLLVS
EFLPGTAANAHNFPRRNRIISGLSLGVLIVEAEIKSGSLITVRYALEQNK
EVFAVPGSIKNPLAQASHFLIKQGAKLVENVSDILDEVSFAYQSGFLTPE
QSTQTNKDSQCEVLNSIGFEVTSVDDIVRRAQWPIDKVQARLLDLELDDQ
IERVLDGYIRVC
>PSHAa1432 srmB, ATP-dependent RNA helicase, DEAD box family
MHFTDLGIDNRLETQLAHQGITQPTDIQAHAVPTALAGHDIFAQSKTGSG
KTLAFLLPAVQRVMKQKALSKRDPRVLIVAPTRELATQVFTQLRLLIAGT
NIKAVKILGGENFNDQIKALRNDPQFVVATPGRLADHLTKRTLQLSGLEL
LIFDEADRILDLGFTEQLKMINDLADHRLRQTLLFSATLDHAQVDALSRN
LLKKPKQIMLSAANEQHSDIKQSLYLADHLDHKEALLEHFLNQDDVGQCI
IFTATRADTSRLSEALCAKGFKAQPLAGDLAQNKRLDIMDAFSRENFKIL
ITTDVASRGLDLLSVTHVINFDLPKHAEEYVHRIGRTGRAGFKGSALSLV
GPKDWPSYLAIKAFLNDELKFDSVDGLKAKFKGIKEKKPVAVLATEKTVA
AKKPVFKRKAKPKKPSAPIKAPINIDGDTPMRRRKKPEQE
>PSHAa0510 srmB, ATP-dependent RNA helicase
MQFSEFDLDNKLLDAINKMGYETPTSIQQQAIPEALQGRDILASAPTGTG
KTAAFLIPAIQYLLDFPRRDPGFARVLVMTPTRELAYQIHEQCELLAKRT
NLKIGVVTGGINYGTHKEIFEKNNDILIATPGRLMEYLETENFHAEHVEM
LIIDEADRMLDMGFKKEMSRICDEAKNRRQCFLFSATLEGDSVERFAETT
LNDPALLEAESSRKEKAKIHQWVHLADDYHHKLELLVNTLNGPDVTKAIV
FVKTRERLETLIGELTTNDVKAAWLRGEMPQDKRMKAMENFHSGKTRILV
ATDVAARGIDVADISHVINFDLPRTADIYVHRIGRTGRAGKKGIAISLVE
AHDIGILYKIERYIEQKLKRRVIKGLEPKHKEAKPPAKKRKDPVKMKAKK
KAKVKKKK
>PSHAa2705 ssb, Single-strand binding protein (SSB) (Helix-destabilizing protein)
MARGVNKVILVGNLGQDPEVRYMPNGNGVANITLATSDSYKDKNTGQMVD
KTEWHRVVFFGKLAEIVGEYCRKGSQIYVEGKLQTRKWTDPQGQEKYTTE
IVVDGFTGQMQMLGSRGGDQQGGQQSGGYQGNQSQGGQQSGGYQNNQSQG
GQQSGGYQSNQGQNNQQQGGYTPQQQSAPAAQPQSAPAPQQNNQYQQPQG
GFAPQQSSAPQQQGGFAPKPQNAPQGGASNPMEPTIDFDDDIPF
>PSHAa0788 tag, putative 3-methyl-adenine DNA glycosylase I
MTKQTRCSWLDTSKPDYVAYHDNEWGVPVYDDKKLFEFLTLESAQAGLSW
YTILKKRNGYKNAFADFDVRKVAAFTEQDIERLMLDAGIVRNRLKIAATV
NNAKCFIKIQQEFGSFSNYQWQFVGNKPQVSNLNSADNAPAITPTSSAFA
KDLKKRGFKFLGPTTVYAHMQACGMVNDHSNNCFRKEEVMRLGARG
>PSHAa2933 tatD, putative metal-dependent hydrolase, possibly deoxyribonuclease, TatD family
MPYSLIDAGVNLTNHQFDKQHQDIIARANAAGVKHMLIIGCDVAASEQSL
ELAIAHQQFSTAGVHPHDAKSATDELETQLTQLASHKQVIAIGECGLDYN
RDFSPRDVQRSVLRRQLALAEQLNLPVYLHERDASEDMLSILKEFNVRGV
LHCFTGNAQALKSYLALGLYIGITGWVCDERRGKELQQLIPSIPLNKLLI
ETDAPFLIPRTVSPKPKSRRNEPALLTYVCETIAQLYNLTPEAIAQQTTL
NFYNVFGLKAK
>PSHAa1348 topA, DNA topoisomerase type I, omega protein
MGKSLVIVESPAKAKTINKYLGNDFIVKSSIGHVRDLPTSGSGKNKVPAT
KTPAEVRKLPPEEKAAYKKQRDYSNLVARMGIDPDKGWEPHYEILPGKEK
VVQELKKLAENADQIYLATDLDREGEAIAWHLQEIIGGEPAKYKRVVFNE
ITKNAIQQAFETPGELNTDMVYAQQTRRFLDRVVGFMVSPLLWAKVARGL
SAGRVQSVAVRLLVEREREIKAFIPEEFWDIHADVKNAESELRLEVAKQA
DKPFKPVNEAQASAAVKSLENAEYKVISVDEKPSKSRPSAPLITSTMQQA
ASTRLGYGVKKTMMLAQRLYEGGYITYMRTDSTNLSKDAVAMCREYVTEQ
FGEKYLPKDPINYSSKGNAQEAHEAIRPSSVTVLSGHIEGVDADAKKLYE
LIWRQFVACQMVPAEYDLTTLTVAANDFQLKAKGRVLRFDGWTKVQPAIR
KKNEEDQSLPAVTVGETLTLIELDPKQHFTKPPARFSEASLVKELEKRGI
GRPSTYASIISTIQDRGYVRVENRRFFAEKMGEIVTDRLVENFEDLMNFD
FTAKMEGRLDDIAEGERIWTEVLDKFYADFSTQLTVAKDEPENGGMRLNE
MVETDIECPTCSRKMGIRTASTGVFLGCTGYNLPPKERCTTTMNLVSGDE
AVAADSADAEDLETETLMQMKRCPICETAMDSYLIDETRKLHVCGNNPAC
SGHVVEQGTFKIKGYDGPLIECDKCGADMELKSGRFGKYFGCNNDECKNT
RKLLKNGEAAPPKEDPVHITELECEKSDAYFVLRDGAAGIFLAANTFPKS
RETRAPKVEELQRFRDRISPKFYYLADAPAQDPDGNLAVVRYSRKNKEQY
VMTEVDGKATGWTAHYVAGKWVEEAKKKAAPKKKAAAKKAPAKTKAKAKT
KKDDE
>PSHAa2356 topB, DNA topoisomerase III
MLPKPHKKSDGFITAGNGDVVTWCIGHLLEQAEPEAYNPDYKKWAVEHLP
IVPNEWKLVVKSKTRKQFTVVKTLIKKADTLVNMGDPDRVGQILIDEVIN
HCGVSKAKKTQVLRCLISDLNPAAVKKALNNLRKNTDFIPLATSALARAR
ADWLYGINMTRLCTLQGRQSGYNGVLSIGRVQTPVLGLIVHRDLEIANFV
SKPFYEVICTLLTSKGEAYQAKWRPSKACEPYMDEDNRVLSKPLALNVIS
KVQNKAGKVVNVTQAKKATPPPLPYSLSALQIDAAKRFGMSAQSVLDTCQ
QLYERHKLITYPRSDCRYLPKEHLNDVKQVVGAIGKSCSALSDAANNANL
SLKNKAWNDSKVSAHHAIIPTSKSTDLSRLSPAENNIYELVARQYLIQFY
PPFEYVDKQIDTEVSGGLFISKQKDVVSQGWKALFPSKQKSQAESEFSAV
SLPNVSKGDEVHCQQADLIEKQTTPPKYFTDATLLSAMTGIARYVTDASI
KKVLRDTDGLGTEATRAGIIELLFKRQFLTRKGKDIRATDVGTQLICSLP
ERMTIPDMTAHWESQLEAISQKEIKYAHFMDPITQSIDTLIAEVKTVTFN
GLKGKGTPYKSKKYFKTKTKVNKKNVERL
>PSHAb0536 umuC, component of DNA polymerase V with UmuD
MAFYASAEKVFDPAIRSKPVVVLTNNDGCICAVCPIARRLNIPKFAPYFK
VKQLLAQNNVVIRSSNYELYADLSDKMMNVIGRFCDVQHVYSIDESFLHF
NGYTPVINDWFAYGHTIRRTVWRETKLPVGVGFGSTATLAKAANHAAKKL
SGFNGVAVINCEASRKAILQRMSCQDIWGIGKRLAKKLKVMNIHTAWQLA
QQNPNSMRRAFSVVVERTVNELNGIPCLNWDEVRQDKREIFSTRSFGERI
YEPTALKTALINHVTVVASKLRKQKSLTKQLYIFAASSSHENVFYKKSYM
YTFASPTNDTCVMASAVSQVFEQIYQPGIRYYKCGVGALELIAQQFQQDD
LFNERTDNPPLMNCLDAINKRYGKGMLSLASSKLNEGWHMNRNFLSPQYT
TRWRDIPKIYCE
>PSHAa2561 ung, uracil-DNA-glycosylase
MSDWTAFLKQELQQAYMQQTLDYVAKRRSEGVAVYPPKDQVFSAFTATQL
SDIRVVILGQDPYHGEGQAHGLCFSVLPEVKKLPPSLKNIYKELASDIND
FVIPTHGYLQSWAEQGVFLLNTVLTVEQGQAHSHKHLGWEQFTDKVITHI
NTHCEGVIFILWGAHAQKKGKGIDSARQHILAGPHPSPLSAHRGFFGCRH
FSATNALLQSQGKTPINWQV
>PSHAa2707 uvrA, DNA excision repair enzyme subunit, with UvrBC
MENIEVRGARTHNLKDISLTIPRDKLIVITGLSGSGKSSLAFDTLYAEGQ
RRYVESLSAYARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGT
ITEIYDYLRLMFARVGEPRCPTHDLPLAAQTISQMVDTVLALPEGSKLML
LAPVIKERKGEHVKLLEQLASQGYIRARIDGEVCDLSDPPPLDLHKKHTI
EVVVDRFKVKDGQQQRLAESFEAALEMSGGVANIAYMDDSSAEEMLFSAN
FACPTCGYAMTELEPRLFSFNNPAGACQSCDGLGVRQYFDPNRVVQNPEL
SLAGGAIKGWDKRSFYYYQMLQAVAQHYNFDLDVPYQDLDKASQKIILEG
SDTTKIAFSYRNDRGDLITRNHEFEGVLNNMYRRYRETESNSVREELAKY
QTSQACPSCHGSRLRQESRHVFIGQTNLPTITHMSIGEAMDFFEGLKLTG
QRGQIAEKILKEIRDRLSFLINVGLNYLSLDRSADTLSGGEAQRIRLASQ
IGAGLVGVMYVLDEPSIGLHQRDNDRLLKTLVHLRDLGNTVIVVEHDEDA
IRAADHIIDIGPGAGVHGGHIIAQGTRDDILACKESVTGQFLSGVRRIEI
PKLRHPTNDKWLELFGATGNNLKNVDLKIPFGLMTCVTGVSGSGKSTLIN
DTLFKLAHTELNGATTAEAAAYKSISGLEHFDKVIDIDQSPIGRTPRSNP
ATYTGIFTGIRELFAGTQESRSRGYKVGRFSFNVKGGRCEACQGDGVIKV
EMHFLPDVYVPCDVCKGKRYNRETLEVLYKGKNIHQVLDMTVEDAHDYFD
KIPAIARKLKTLMDVGLSYIRLGQAATTLSGGEAQRVKLARELSKRDTGK
TLYILDEPTTGLHFADIEQLLVVLHRLRDHGNTIVVIEHNLDVIKTADWV
IDLGPEGGAGGGEILIAGTPEQVAECERSHTGRYLKELLK
>PSHAa1110 uvrB, ATP-dependent DNA excision repair enzyme UvrAC
MSDHFQLKSHFKPAGDQPTAIAQLCEGLEAGLAHQTLLGATGTGKTFTMA
NIINDLNRPTIIMAHNKTLAAQLYGEMKEFFPKNAVEYFVSYYDYYQPEA
YVVSSDTFIEKDASINEHIEQMRLSATKALLERRDTIIVASVSAIYGLGD
PKSYMKMMLLLKVGEKVDQRDMLRRLAEIQYTRNDVDFSRGTYRVRGEVV
DIFPAESSTFAIRVEMFDDEIERLSIFDPLTGAIEKHIVRTTIYPKTHYV
TPREKILGAIEKIQEELKDRRAQLLSANKLVEEQRVTQRTQYDIEMMREL
GYCSGIENYSRYLSGRTPGDPPPTLLDYLPDDALMIIDESHVTVSQIGAM
YKGDRSRKENLVEYGFRMPSAMDNRPLRFEEFEAISPQTIYVSATPGDFE
LDRCVGAIAEQVIRPTGLLDPLIEVRPVGDQVDDLLSEIYKSVEKGERVL
VTTLTKRMSEDLTDYLSEHNVKVRYLHSDIDTVERVEIIRDLRAGVFDVL
VGINLLREGLDMPEVALVAILDADKEGFLRSARSIIQTVGRAARHLEGRA
ILYGDRITKSMAKAMDETARRREIQHAYNIEHGIEPHSLAKKILDSMDVG
EEAGPKDNLRLIRKESKKVLSAKEITVQIKQLDSKMHAYASDLEFEKAAS
VRDEIHELQQQLIN
>PSHAa1915 uvrC, DNA repair enzyme together with UvrAB; incision nuclease subunit C; repair of UV damage to DNA
MLDSDNQVIYVGKAKHLKKRVSSYFRSNITDSKTRVLVSNICNVEVTLTN
TETEALLLENNLIKKYQPRYNILLRDDKSYPYILLTNHKHPRLAFHRGSR
KVKGEYFGPFPSAGAVSESLRLMQKIFPIRQCEDVYYRARSRPCLQYQLK
RCSAPCVNKVSDEDYTEQVDYVRKFLTGKSHEVIADLIKKMEAASQQLNF
ELAAKVRDQIMLLRKMQEQQSISGNFAEMDVVGFAHLNGLNGIHLLMIRD
HKVLGSKTYFPKVPKDSSEQEILTSFLGQYYLAPGATGRIAKEIILPFEI
QESDVLGQALTQISERKVTLKVVTRGERAQYLQLANKNALNSITVKQSTQ
DSINKRYAQLKATLRLDDITRMECFDISHTMGENTVASCVVFDSQGPNTK
EYRRYNVTGITGGDDYAAMEFALNKRYNKLVDEDKIPDVIFIDGGKGQLG
RAEQYFATWPHAKMPLLVGVAKGTSRKPGLETLLIDGGRKTIPMDSDAPA
LHLIQHIRDESHRFAIAGHRNKRQKQRTQSLLEEINGVGAKRRQTLLKYL
GGMQGVKAANIEQLKKVPGISPDMADKIFNHLHDKG
>PSHAa0122 uvrD, DNA-dependent ATPase I and helicase II; highly similar to PSHA_1_2804
MDVSQLLDGLNDKQRDAVAAPLQNMLVLAGAGSGKTRVLVHRIAWLMQVE
QASTYSIFAVTFTNKAAKEMRTRVEETLKAPVGGMWIGTFHGLSHRILRA
HHREAKLPEAFQILDSDDQLRMIKRLLKSMNIDDKKWPAKQFGWYISAKK
DEALRPKDIQAYDINEQMMLRVYAAYQEACDRAGLVDFAEILLRSYEVLK
NNPTLLRHYQQRFAHMLVDEFQDTNTIQYAWLKLLAGDSNSIMIVGDDDQ
SIYGWRGAKIENIKRFLTDFSAETIRLEQNYRSTATILKASNALIQNNSE
RMGKSLWTDGNEGEPISIYAAFNELDEARFVSSKLRSWLNAGNALQDAAI
LYRSNAQSRVLEEAMLQEGLKYRIYGGMRFFERQEIKDALSYLRIIGNRQ
DDAAFERVINTPARGIGDKTLSHIRDCARAESLPLWYAAKAIVEQQHLSG
RASGAVSKFVELVEHIEDKISDLTLHEQAKYVIQTSGLMAMYQAEKGEKG
RARVENLEELISACDQYELPEEEEYSSPLQGFLAHTSLESGEGQAEEHED
AVQMMTLHSAKGLEFPLVFMVGVEEGMFPSQQSNEESGRLEEERRLCYVG
MTRAMDKLYISHAESRRLYGQEKYHTPSRFLREIPEDCVEEIRIKTQVSR
PPAAGRFSASVSHAAFEDSGFNLGQRVLHAKFGIGTVLNYEGAGAQSRVQ
VNFDDLGSKWLVTAYARLQAI
>PSHAa1096 uvrD, DNA helicase II.
MTKLFKPTTADKEIEECLVAAQSFSVVAGAGSGKTTSLVTALNFLRDKVG
SDLRKNGQKIVCITYTKRATAVIEERLGFDELYLVSTIHSFLWSSISRFT
KDIRVALRDSLIPNHIAKAREKDNGRNSQSAQRARARIVELTEELELLDQ
VTTFKYDESQFSSFSKGQIGHDDVIDLAAYLISESLILQRGFGFQFPYIF
VDEAQDTFDSVIAAFNTICSGEGLPMVAYFGDPMQQIYDNGVGVFDGPEG
FRLIEKEENFRSATSIVALTNKLRNDIQQMPAGDSALNVGSVLLTLIETE
APAGPRGRYTPEQLDLSLSKFDEALQYIGWQENKEAKRLFLVRQMIARRL
GFSSLQNLFTGVYASNKAQDEYIDGDHFLVKPFIKSLCPLIVSMQNGNKK
QIVGILREETPAFDILGINKDRPLKEMLDIAKDLVNELSEMWVERPIGDI
LRYAKENRLCTISERLAATLDREPRVEAYDNAIHAEEKSDWLADEFLSMS
TNELLPYYGFVSDHTALSTQHGSKGEEYEDVLVVFDDIEASWNMYSFNKL
LTPAAAGDGTEGQLARSRKLAYVCFSRARMNLRIFLYCQDAKAARAELVG
SELLDSEQIEILPSR
>PSHAa0090 xerC, site-specific recombinase
MSDNPAPNISDLSDNWRTPITLFSDYLKFERQYSAHTVNQYVSQLGFAAL
YFSKLCDDWFSVQGEHIRRYSMALRSKQLSGRTISLKLSCIRSLYKFLKA
KNIAKQAHYHNPAVGIKGPKFAKPLPKNLDVDQMARLLEIPDDEPLAIRD
KAMMELMYSSGLRISELVGANLQDISAANGEILVRGKGNKERLIPVGSKA
LNALKKWLIIRPQFANPDEVAVFLSSKKNRISVRQVRLRMQEWGIKQGIS
SQVHPHKLRHSFASHILESSGDLRAVQELLGHSSLSATQVYTHLDFQHLA
KVYDNTHPRAKKRTD
>PSHAa0514 xerD, site-specific tyrosine recombinase XerD
MTTLADDFSEPSTAPKSNNDYLETFLDCLYLEQGVSENTLSAYRSDLDKF
CQFLKGKNLMTVTGLDVESYLAHRVDLGLKPRSTARSISALKRFYQYFVR
EKLISDSPMLNIAQPKAGQSLPKTLSEAEVEALLSAPNTDEPMGLRDKAM
LELLYATGLRVSELVGLRIEQINLRQAVVFVKGKGNKERLVPLGEEAMYW
LEQFLKVGRAQMIKHATDFVFPSKRGVGMTRQTFWHRVKHYAILASIESS
LSPHTLRHAFATHLLNHGADLRVVQMMLGHSDLSTTQIYTHVANERLKSV
HAQHHPRA
>PSHAb0468 xni, putative exonuclease IX, 5'-3' exonuclease
MKPHLLLIDALNLIRRIYAVDANQKHHSDEQMLKASCARVAHACSKLLSS
TKATHAIAVFDGDKSWRYHFYKDYKHSRAPMPQILKDALVQFKAAIEETG
IVVFEPINDEADDIIATLANKASHNNISSVIVSTDKGFLPFLNEHIAVYD
YFKKHYLDQDSIKQRFGVEQKKLVEFWAFAGDKTNDIPGVKGIGTKSAQL
LVNNYSSVEDALNDDALSASLRKKLTENMDMYVISKQLVSLRTDINLGFS
LKQLRLN
>PSHAa0647 xseA, exonuclease VII, large subunit
MFSKPLQTIYTVSRLNREIRALLEQGFASLVLTGEISNFITPASGHWYFS
LKDDKAQIKAAMWRGNNRNQSYRPINGAQVTVKARVSLYEPRGDYQLIVE
HMEPAGEGQFKQEFDALKMRLAAEGLFSSVYKKPLPQNINRIGVITSATG
AAIKDILTVLKRRAPQLEVIIYPAMVQGKDAHLQLIKQIELANIRSEVDV
LILGRGGGSLEDLWCFNHEQLARAIFNSQLPIVSAVGHEIDTTISDYVAD
VRAATPSAAAELVSPNTQELHNKVTQLVNRLANAFKHDMSEKRAQALQLQ
HRLNLCHPRNQLNQKAQRLDELSIALQQAMRNSLYQQERTLNNLTPRLMR
QSPDKKLTQASHQLAQLQTRLNQAIQQQLQQANNSLALQASRLDSVSPLN
VLARGYSITKTDKQKVVKSVADVKVGDTLITELVDGTLHSQVLS
>PSHAa2364 xseB, exonuclease VII small subunit
MATKKPENLSFEQALEELTTIVSEMEQGDLSLEQSLKQFERGIALAGASS
SKLQQAEQKVAILMGKDEKSVLTDFDNDME
>PSHAa1339 xthA, exonuclease III
MKVISFNINGLRARLHQLQAIIDKHQPDIIGLQEIKVHDEAFPLEDVQKM
GYHVYYHGQKAHYGVAMLCKKEPKSVFKGFATDTEESQKRMISVTVEQDN
GRDLTVMNGYFPQGENINHETKFPYKRQFYKDLMTHLQTNHTPDEDVIVM
GDINISPTNLDIGIGEVNAKRWLKTGKCSFQPIEREWLATLLNWGFKDTF
REQNPETSDQYSWFDYRSKGFLDNRGLRIDVVLATHELAARCIDTGIDYE
LRGIEKPSDHAPIWSEFK
>PSHAa1985 yejH, putative ATP-dependent helicase with nucleoside triP hydrolase domain
MIVLPTGAGKSLVIAELARIAKQKILVLAHVKELVEQNSQKYKSFGLEAS
IFSAGLKEKSLNHQVTFASVQSLSRNLDQLNEHYSLLIIDECHRVNGDKK
SQYGKVINALQAHNPQLKVLGLTATPYRLGMGWIYHHHYHGFVRGNKDSP
FKSCIFELPLRYMIKHNYLTPPNEMDTAISHYDFSALTSDAFGRYTNEDM
NALLKNSARATQSILQQVMQYSENRQGIMIFAATVMHAQEILSYLPHQQS
ALITGDTPNSERDKIIKQFKAKQLKYLVNISVLTTGFDAPHVDFIAILRP
TESVSLYQQIVGRGLRLAESKTDCLVIDYAGNGFDLFHPEVGDKKGDSDN
EPVQVLCPGCGFANIYWGKTDSTGKVIEHFGRRCKGLLEDDEGNKEQCDY
RFRFKECDECGAQNDIAARKCHDCGAVMADPDDKLRNALNLKDALVLRCS
GLSVTQLKNEMIKVTYFDEDGASCDEVYDIANKGAAYIFNRQFGKRVGQG
QAPVKFKTAEQVINAQLDLIAPDFVIARKSKKYGWKVADKLFDYKGSFRK
ANQLNP
>PSHAb0497 yoaA, putative ATP-dependent helicase YoaA with nucleotide triphosphate hydrolase domain, SOS repair, DinG family
MIGIIKQLFSATGPLALSLDGYTPRQPQIDMAVAVADALKNSSQLVVEAG
TGTGKTFAYLAPALKSKGKTIISTGSKALQEQLYHRDLPQLVKALSASKK
TALLKGRANYLCTYRLNQHVAHVPTDDSDVMHQLAMVAKFASETQSGDLA
DCIGIEDDAKVLPYVNSTADNCLGKECPDFQACYIRKARLNAADADIVVI
NHHLFFADMAVKDSGFAELMPTADAYIFDEAHQLSKIASDYFGESVSTKK
LVDLINDLRAIYRAEIPDMLQLGKSLNKLETSVADLRLQFGVDGSRGDWR
AKLSDKQICAALHRVISDLDFVYQVLKLCLDRSDKIEHPFERALAFKGQL
ERVFDTTQTGFSYWYETTRRYLTINITPLNVSVKFAKMMADTGAGFVFTS
ATLSVDNQLSHFNASLGLTPKQSMMVDSPFDYPNQALLCLPRYLPESHAD
NMPHAIVKLTLELIKSAKGRCFVLFTSYRMMHLVAEGLTTQIDYPVYMQG
QMSKRIILEKFTRHGNAVLLGTASFWEGVDVRGSTLSCVIIDKLPFAAPD
DPLLQAKMQDCQMQGKDPFAHIQLPQAVIALKQGVGRLIRDSKDKGVLVI
CDNRLVTRQYGQVFLKSLPPMRRTRSLEDANKFLQQIN