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2024-05-04 00:19:56

Gene list

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COG category: Replication, recombination and repair
Organism: Pseudoalteromonas haloplanktis TAC125, TAC125

Number of genes found: 184

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Pseudoalteromonas haloplanktis TAC125, TAC125
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA PSHAa0408 putative orphan protein ; putative transposasechromosome I CDS425674 300 + 0.416667
NA PSHAa2110 putative phage integrasechromosome I CDS2229395 1152 + 0.359375
NA PSHAa0707 conserved protein of unknown functionchromosome I CDS738100 516 - 0.434109
NA PSHAb0224 putative Mini-circle transposase for insertion sequence (IS117)chromosome II CDS264017 303 - 0.366337
NA PSHAa0676 putative transposase (IS492)chromosome I CDS704044 954 - 0.384696
NA PSHAa0421 conserved protein of unknown function ; putative phage integrasechromosome I CDS434383 1155 - 0.428571
NA PSHAb0291 putative ADA regulatory protein (Regulatory protein of adaptative response)chromosome II CDS340959 1365 + 0.423443
NA PSHAa0418 conserved protein of unknown functionchromosome I CDS432912 150 + 0.38
NA PSHAa0419 putative enzyme with RNA-directed DNA polymerase domainchromosome I CDS433092 900 + 0.443333
NA PSHAa2113 putative orphan proteinchromosome I CDS2232636 1626 + 0.400984
NA PSHAa2057 conserved protein of unknown functionchromosome I CDS2173142 975 - 0.43282
NA PSHAa2491 putative orphan proteinchromosome I CDS2641242 681 + 0.408223
NA PSHAa2319 putative lipopolysaccharide kinase familychromosome I CDS2459352 720 + 0.408333
NA PSHAa2399 putative nudix hydrolase family proteinchromosome I CDS2549600 513 + 0.397661
NA PSHAa0409 putative orphan protein ; putative transposase (IS66 family element,Orf2-like)chromosome I CDS425970 348 + 0.393678
NA PSHAa1465 putative mini-circle transposase for IS117chromosome I CDS1543034 1263 - 0.398258
NA PSHAa1201 putative DnaX, DNA polymerase III, gamma/tau subunitschromosome I CDS1245645 2529 + 0.425465
NA PSHAb0076 conserved protein of unknown function ; putative transposase DNA-binding domainchromosome II CDS87906 1176 + 0.479592
NA PSHAa0416 conserved protein of unknown function ; putative transposase (IS408)chromosome I CDS430606 1110 - 0.445045
NA PSHAa2220 conserved protein of unknown functionchromosome I CDS2358347 975 - 0.426667
NA PSHAa1244 conserved protein of unknown functionchromosome I CDS1297105 546 - 0.401099
NA PSHAa0581 putative transposasechromosome I CDS603129 396 - 0.338384
NA PSHAa0677 conserved protein of unknown functionchromosome I CDS705519 1050 + 0.370476
NA PSHAa0402 putative orphan protein ; putative ISSod2, transposase OrfA (partial)chromosome I CDS421985 165 + 0.430303
NA PSHAa0181 conserved protein of unknown functionchromosome I CDS189645 699 + 0.409156
NA PSHAa0659 putative hydrolase with metallo-dependent hydrolase domainchromosome I CDS685050 768 + 0.421875
NA PSHAa2095 putative orphan proteinchromosome I CDS2219761 1086 + 0.357274
NA PSHAb0026 putative transposase IS200-likechromosome II CDS32988 276 - 0.373188
NA PSHAa2601 putative Holliday junction resolvasechromosome I CDS2746486 450 + 0.422222
NA PSHAa2360 putative phage integrase familychromosome I CDS2505976 1326 - 0.347662
NA PSHAa0411 putative orphan protein ; putative insertion sequencechromosome I CDS427973 330 - 0.442424
NA PSHAa1800 putative metallo-dependent hydrolasechromosome I CDS1890972 780 - 0.380769
NA PSHAa0414 conserved protein of unknown function ; putative transposasechromosome I CDS429814 474 - 0.417722
NA PSHAb0050 conserved protein of unknown functionchromosome II CDS54614 978 + 0.43047
NA PSHAa0403 putative orphan proteinchromosome I CDS422046 192 + 0.4375
NA PSHAa2345 DNA topoisomerase III (C-terminal part)chromosome I CDS2488468 1497 - 0.40815
NA PSHAa0353 putative enzyme with N-6 Adenine-specific DNA methylase domainchromosome I CDS366612 606 - 0.40099
NA PSHAa1247 conserved protein of unknown functionchromosome I CDS1301085 1272 - 0.409591
NA PSHAa1461 putative integrasechromosome I CDS1540233 927 - 0.374326
NA PSHAa2795 conserved protein of unknown functionchromosome I CDS2972214 1608 + 0.379975
NA PSHAa0415 conserved protein of unknown function ; putative transposasechromosome I CDS430260 318 - 0.427673
NA PSHAa0341 putative transposasechromosome I CDS353505 1167 - 0.387318
NA PSHAa2200 putative deoxyribodipyrimidine photolyasechromosome I CDS2336354 1512 + 0.406085
NA PSHAa0410 putative transposase (IS66)chromosome I CDS426414 1563 + 0.418426
NA PSHAa0027 putative DNA topoisomerase; C4 zinc finger domain proteinchromosome I CDS30253 576 + 0.411458
NA PSHAa1585 conserved protein of unknown functionchromosome I CDS1651148 921 - 0.371336
NA PSHAa1990 DNA polymerase IIchromosome I CDS2099873 2421 - 0.386204
NA PSHAa0407 putative orphan protein ; putative insertion sequence ATP-binding proteinchromosome I CDS425137 486 - 0.438272
NA PSHAa2244 putative 2OG-Fe(II) oxygenase superfamily proteinchromosome I CDS2383155 591 - 0.417936
NA PSHAb0039 putative protein with helicase domainchromosome II CDS43759 4056 + 0.40927
NA PSHAa2361 DNA topoisomerase III (N terminal part)chromosome I CDS2507335 360 - 0.422222
NA PSHAa1897 conserved protein of unknown functionchromosome I CDS2002012 327 - 0.373089
NA PSHAb0040 putative uracil-DNA glycosylase family proteinchromosome II CDS48095 603 - 0.437811
NA PSHAa1523 conserved protein of unknown functionchromosome I CDS1591996 1665 - 0.464865
NA PSHAb0441 conserved protein of unknown functionchromosome II CDS503476 306 + 0.398693
NA PSHAa0582 putative transposase (IS605)chromosome I CDS603563 1227 + 0.414018
NA PSHAb0003 putative DNA helicase with SNF2 domainchromosome II CDS2802 3147 + 0.368605
NA PSHAa0835 conserved protein of unknown function; putative competence proteinchromosome I CDS864531 300 + 0.346667
NA PSHAa0412 putative orphan protein ; putative transposase (partial)chromosome I CDS428295 1017 - 0.453294
NA PSHAa1435 putative DNA polymerase III, epsilon subunitchromosome I CDS1510512 711 + 0.424754
NA PSHAa1926 putative NTP pyrophosphatasechromosome I CDS2036582 924 - 0.417749
NA PSHAa1474 conserved protein of unknown functionchromosome I CDS1552345 999 + 0.361361
NA PSHAb0554 putative site-specific tyrosine integrase/recombinase; may be used for the termination of replication of chromosome 2chromosome II CDS620550 1212 + 0.365512
NA PSHAa1262 putative orphan proteinchromosome I CDS1319354 408 + 0.387255
NA PSHAa1164 conserved protein of unknown function ; putative NUDIX hydrolase domainchromosome I CDS1209202 576 - 0.414931
NA PSHAa1996 conserved protein of unknown function; putative enzymechromosome I CDS2106298 2193 - 0.391701
NA PSHAa1993 conserved protein of unknown functionchromosome I CDS2105134 609 + 0.380952
NA PSHAb0096 putative ABC transporter ATP-binding proteinchromosome II CDS113073 1959 - 0.370597
NA PSHAb0094 putative orphan proteinchromosome II CDS111838 864 - 0.329861
NA PSHAa2471 putative orphan proteinchromosome I CDS2617747 975 - 0.340513
NA PSHAa0845 conserved protein of unknown functionchromosome I CDS872645 315 + 0.384127
NA PSHAa2523 conserved protein of unknown functionchromosome I CDS2677968 372 + 0.389785
NA PSHAa1276 conserved protein of unknown functionchromosome I CDS1334629 579 + 0.350605
NA PSHAa2177 putative DNA ligase, ATP-dependentchromosome I CDS2313336 843 - 0.408066
NA PSHAa2105 putative RepAchromosome I CDS2225959 963 - 0.371755
NA PSHAa1095 putative orphan proteinchromosome I CDS1139748 2082 + 0.431316
NA PSHAb0119 putative helicase (recQ-like)chromosome II CDS144978 1947 + 0.426297
NA PSHAa0641 putative ATP-dependent RNA helicase(rhlE-like) ; DEAD-box protein familychromosome I CDS660520 1299 + 0.437259
NA PSHAb0027 Peyer's patch-specific virulence factor GipA (transposase)chromosome II CDS33532 1044 + 0.372605
NA PSHAa0589 putative DNA polymerase, exonuclease activitychromosome I CDS616124 624 + 0.405449
NA PSHAa1485 putative Serine/threonine protein kinasechromosome I CDS1564094 1815 + 0.420386
NA PSHAa0405 putative orphan protein ; putative transposase (partial)chromosome I CDS422515 546 + 0.412088
NA PSHAa1883 conserved protein of unknown functionchromosome I CDS1985563 975 - 0.431795
NA PSHAa1369 conserved protein of unknown functionchromosome I CDS1430474 1287 - 0.420357
alyll PSHAa1748 putative chondroitin AC/alginate lyasechromosome I CDS1831286 2217 - 0.40009
dam PSHAa2712 DNA adenine methylasechromosome I CDS2874678 858 - 0.371795
dbpA PSHAa0109 putative ATP-dependent RNA helicase; putative cold-shock protein; could be specific for rRNA foldingchromosome I CDS113841 1389 + 0.416127
deaD PSHAa0990 ATP-dependent RNA helicase, cold shock protein Achromosome I CDS1024855 1851 - 0.43436
dinB PSHAa2389 DNA polymerase IV, devoid of proofreading, damage-inducible protein Pchromosome I CDS2540176 1056 - 0.431818
dinG PSHAa1991 putative ATP-dependent helicase DinGchromosome I CDS2102278 2076 + 0.412813
dnaA PSHAa0001 DNA replication initiator protein, transcriptional regulator of replication and other genes; binds DNA at DnaA boxes, binds cardiolipin and other acidchromosome I CDS118 1425 + 0.386667
dnaB PSHAa2435 replicative DNA helicase; chromosome replication; chain elongationchromosome I CDS2585161 1296 - 0.420525
dnaE PSHAa2015 DNA polymerase III, alpha subunit; the entire polymerase contains 10 subunitschromosome I CDS2126347 3492 - 0.426403
dnaG PSHAa0350 DNA primasechromosome I CDS363807 1752 - 0.414384
dnaN PSHAa0002 DNA polymerase III, beta-subunit; processivity clamp of DNA polymerase IIIchromosome I CDS1556 1104 + 0.394928
dnaQ PSHAa1963 DNA polymerase III: epsilon subunit, 3-5 exonucleolytic proofreading functionchromosome I CDS2067731 714 - 0.42437
endA PSHAa2879 Endonuclease I Precursor (Endo I)chromosome I CDS3050691 654 + 0.406728
fis PSHAa0346 DNA-binding protein for site-specific recombination and inversion, transcription of rRNA and tRNA operons, and DNA replicationchromosome I CDS359309 291 - 0.415808
gyrA PSHAa1421 DNA gyrase, subunit A, type II topoisomerasechromosome I CDS1494052 2700 + 0.411111
gyrB PSHAa0004 DNA gyrase, subunit B (type II topoisomerase)chromosome I CDS3782 2427 + 0.400082
hda PSHAa1905 putative regulatory factor involved in inactivation of DnaAchromosome I CDS2011794 687 - 0.401747
helD PSHAa1890 putative helicase IVchromosome I CDS1991844 2196 - 0.387067
hepA PSHAa2624 RNA polymerase associated protein (ATP-dependent helicase HepA)chromosome I CDS2775671 2895 + 0.433161
holA PSHAa1029 Putative DNA polymerase III, delta subunit, probably ATP hydrolasechromosome I CDS1064793 1038 - 0.38343
holB PSHAa1802 putative DNA polymerase III delta' subunitchromosome I CDS1892098 915 - 0.383607
holC PSHAa2424 DNA polymerase III, chi subunitchromosome I CDS2574827 447 + 0.436242
hrpA PSHAa1144 helicase, ATP-dependentchromosome I CDS1187248 3894 + 0.422958
hrpB PSHAa2216 ATP-dependent helicasechromosome I CDS2354016 2427 - 0.452822
hupA PSHAa1287 DNA-binding protein HU-alpha (HU-2), likely to play a role in DNA replication and in rpo translationchromosome I CDS1345041 270 + 0.388889
hupB PSHAa2059 DNA-binding protein HU-beta (NS1) (HU-1)chromosome I CDS2176431 273 - 0.432234
hupB PSHAb0462 DNA-binding protein HU-beta (NS1) (HU-1)chromosome II CDS520113 276 + 0.42029
ihfA PSHAa1902 integration host factor (IHF), alpha subunit, DNA-bending protein, DNA replicationchromosome I CDS2008024 300 - 0.413333
ihfB PSHAa1426 putative integration host factor (iHF), beta subunit, site-specific recombinationchromosome I CDS1502078 288 + 0.413194
ligA PSHAa1083 NAD-dependent DNA ligasechromosome I CDS1121252 2022 + 0.440158
mfd PSHAa1836 transcription-repair ATP-dependent coupling factorchromosome I CDS1928141 3474 + 0.434945
mutH PSHAa0743 methyl-directed mismatch repair protein with restriction endonuclease-like domainchromosome I CDS778909 672 - 0.433036
mutL PSHAa0269 Enzyme in GATC methyl-directed mismatch repair, stimulates binding of Vsr and MutS to heteroduplex DNAchromosome I CDS282222 1857 + 0.446419
mutM PSHAa0447 formamidopyrimidine DNA glycosylasechromosome I CDS467259 777 + 0.449163
mutS PSHAa0692 methyl-directed mismatch repair ATP-binding protein, dimer/tetramer, associates to MutL, triggers MutH activity on hemimethylated GATCchromosome I CDS717186 2586 - 0.438515
mutT PSHAa2744 7,8-dihydro-8-oxoguanine-triphosphatase, prefers dGTPchromosome I CDS2915136 399 + 0.383459
mutY PSHAa0554 A/G-specific adenine glycosylasechromosome I CDS569838 1059 + 0.412653
nth PSHAa1099 endonuclease III; DNA glycosylase/apyrimidinic (AP) lyase, acts on 5-formyluracil and 5-hydroxymethyluracilchromosome I CDS1144554 651 - 0.44086
nudE PSHAa0127 ADP compounds hydrolase nudEchromosome I CDS135981 612 + 0.406863
nudF PSHAa2591 ADP-ribose pyrophosphatase (ADP-ribose diphosphatase) (Adenosine diphosphoribose pyrophosphatase) (ADPR-PPase) (ADP-ribose phosphohydrolase) (ASPPase)chromosome I CDS2735804 627 - 0.409888
nudH PSHAa0745 (Di)nucleoside polyphosphate hydrolase (Ap5A pyrophosphatase)chromosome I CDS780007 519 + 0.416185
ogt PSHAb0293 putative Methylated-DNA-[protein]-cysteine S-methyltransferase; O6-methylguanine-DNA methyltransferasechromosome II CDS343858 468 + 0.429487
parC PSHAa2585 DNA topoisomerase IV, subunit Achromosome I CDS2728571 2295 - 0.437473
parE PSHAa2587 DNA topoisomerase IV, subunit Bchromosome I CDS2732005 1890 - 0.435979
phr PSHAb0453 putative deoxyribodipyrimidine photolyasechromosome II CDS512500 1407 + 0.41791
polA PSHAa2757 multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal); 3'->5' polymerase; 3'->5' exonuclease (C-terminal)chromosome I CDS2927964 2736 - 0.416667
priA PSHAa2728 Primosome factor Y, also called protein n'; ATP-dependent DNA helicase activity required for recA-dependent stable DNA replication mode; also involvedchromosome I CDS2893007 2187 + 0.445359
priB PSHAa2441 primosomal replication protein Nchromosome I CDS2589583 303 - 0.405941
radC PSHAa2643 associated with replication fork DNA repair proteinchromosome I CDS2794302 675 - 0.416296
rarA PSHAa1714 putative polynucleotide enzyme with nucleotide triphosphate hydrolase domainchromosome I CDS1791700 1344 - 0.478423
rdgC PSHAa2381 nucleoid-associated proteinchromosome I CDS2529447 912 + 0.391447
recA PSHAa0694 RecA protein (Recombinase A)chromosome I CDS720349 1044 + 0.398467
recB PSHAa1858 exonuclease V, beta chain with recC and recD: 5' and 3' nuclease, ATPase, recombinase, helicasechromosome I CDS1953791 3642 - 0.424767
recC PSHAa1859 exonuclease V, gamma chain with recB and recD: 5' and 3' nuclease, ATPase, recombinase, helicasechromosome I CDS1957419 3300 - 0.437273
recD PSHAa1857 exonuclease V, alpha chain with recC and recD: 5' and 3' nuclease, ATPase, recombinase, helicasechromosome I CDS1951779 2016 - 0.417659
recF PSHAa0003 gap repair protein with nucleoside triP hydrolase domain, part of RecFOR complex that targets RecA to ssDNA-dsDNA junctionchromosome I CDS2675 1095 + 0.368037
recG PSHAa2799 ATP-dependent DNA helicase recGchromosome I CDS2976417 2022 + 0.433729
recJ PSHAa0516 Single-stranded-DNA-specific exonuclease, 5'--> 3'-specificchromosome I CDS529691 1722 + 0.447735
recN PSHAa1218 DNA repair protein recNchromosome I CDS1264865 1674 - 0.42055
recO PSHAa0734 DNA repair protein recO (Recombination protein O)chromosome I CDS766132 693 + 0.38961
recQ PSHAa2572 ATP-dependent DNA helicasechromosome I CDS2717620 1824 + 0.449561
recR PSHAa1203 recombination protein recRchromosome I CDS1248570 609 + 0.464696
rep PSHAa2762 Rep helicase, a single-stranded DNA-dependent ATPasechromosome I CDS2935591 1962 - 0.424567
rhlB PSHAa0114 ATP-dependent RNA helicase with nucleoside triP hydrolase domain, putative cold-shock proteinchromosome I CDS120724 1263 + 0.4038
rhlE PSHAa1930 putative ATP-dependent RNA helicase with P-loop hydrolase domainchromosome I CDS2039821 1401 - 0.441114
rhlE PSHAb0411 putative ATP-dependent RNA helicase with P-loop hydrolase domain; DEAD-box protein familychromosome II CDS467541 1302 + 0.417051
rhlE PSHAa2983 DEAD-box protein family; putative ATP-dependent RNA helicase with P-loop hydrolase domainchromosome I CDS3170170 1305 - 0.419157
rnhA PSHAa1964 RNase HI, degrades RNA of DNA-RNA hybridschromosome I CDS2068513 465 + 0.404301
rnhB PSHAa2016 RNAse HIIchromosome I CDS2129841 603 - 0.45937
rnt PSHAa2114 RNase T, degrades tRNA, has exonuclease and ssDNAse activitychromosome I CDS2234245 699 - 0.429185
ruvA PSHAa1876 Holliday junction helicase, subunit Achromosome I CDS1978486 618 - 0.407767
ruvB PSHAa1875 Holliday junction helicase, subunit Bchromosome I CDS1977471 1008 - 0.448413
ruvC PSHAa1877 Holliday junction nucleasechromosome I CDS1979106 525 - 0.43619
sbcB PSHAa1255 exodeoxyribonuclease Ichromosome I CDS1309608 1446 - 0.419087
sbcC PSHAb0054 exonuclease sbcCD subunit Cchromosome II CDS58038 3654 - 0.406404
sbcD PSHAb0055 exonuclease sbcCD subunit Dchromosome II CDS61688 1248 - 0.427885
seqA PSHAa1635 SeqA protein, recognizes hemimethylated GATC motifs; negative modulator of replication initiation; SeqA foci required for chromosome segregationchromosome I CDS1704998 594 - 0.392256
smf PSHAa0025 conserved protein of unknown function ; Smf proteinchromosome I CDS28157 1089 + 0.43067
srmB PSHAa1432 ATP-dependent RNA helicase, DEAD box familychromosome I CDS1505925 1323 - 0.406652
srmB PSHAa0510 ATP-dependent RNA helicasechromosome I CDS524696 1227 - 0.414833
ssb PSHAa2705 Single-strand binding protein (SSB) (Helix-destabilizing protein)chromosome I CDS2866383 735 - 0.455782
tag PSHAa0788 putative 3-methyl-adenine DNA glycosylase Ichromosome I CDS819969 591 - 0.42132
tatD PSHAa2933 putative metal-dependent hydrolase, possibly deoxyribonuclease, TatD familychromosome I CDS3103746 786 + 0.431298
topA PSHAa1348 DNA topoisomerase type I, omega proteinchromosome I CDS1400089 2718 + 0.424209
topB PSHAa2356 DNA topoisomerase IIIchromosome I CDS2499858 1890 - 0.378836
umuC PSHAb0536 component of DNA polymerase V with UmuDchromosome II CDS601249 1239 - 0.412429
ung PSHAa2561 uracil-DNA-glycosylasechromosome I CDS2707756 663 - 0.423831
uvrA PSHAa2707 DNA excision repair enzyme subunit, with UvrBCchromosome I CDS2868667 2823 + 0.444563
uvrB PSHAa1110 ATP-dependent DNA excision repair enzyme UvrACchromosome I CDS1156461 1995 + 0.4401
uvrC PSHAa1915 DNA repair enzyme together with UvrAB; incision nuclease subunit C; repair of UV damage to DNAchromosome I CDS2023555 1761 - 0.402612
uvrD PSHAa1096 DNA helicase II.chromosome I CDS1141826 1848 + 0.430736
uvrD PSHAa0122 DNA-dependent ATPase I and helicase II; highly similar to PSHA_1_2804chromosome I CDS131383 2166 - 0.435365
xerC PSHAa0090 site-specific recombinasechromosome I CDS93298 948 - 0.438819
xerD PSHAa0514 site-specific tyrosine recombinase XerDchromosome I CDS527888 927 + 0.446602
xni PSHAb0468 putative exonuclease IX, 5'-3' exonucleasechromosome II CDS526547 774 - 0.375969
xseA PSHAa0647 exonuclease VII, large subunitchromosome I CDS669110 1335 - 0.441198
xseB PSHAa2364 exonuclease VII small subunitchromosome I CDS2509856 243 + 0.386831
xthA PSHAa1339 exonuclease IIIchromosome I CDS1387093 807 - 0.39653
yejH PSHAa1985 putative ATP-dependent helicase with nucleoside triP hydrolase domainchromosome I CDS2088155 1671 - 0.399162
yoaA PSHAb0497 putative ATP-dependent helicase YoaA with nucleotide triphosphate hydrolase domain, SOS repair, DinG familychromosome II CDS561458 1917 + 0.43036