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# Lactobacillus sakei subsp. sakei 23K, 23K

>LSA0147 Putative DNA-repair helicase
MEVRVIVPNNNLGLFHEKIALFYDELGDTIAINGSNNETQGSVEHNLESF
STFRSWINGQELYIDTFKEQFEDTWQGNLNEYHMLSLQEAVDDDVLREYE
TDESIKTLYSKLSRHGGLEKQNEPKNETERLGFDPYDYQKVAAETWMEKS
KGIIAFATGTGKTKTAIYAFDQLMKKEGAKVFLITVPDKTLVEQWSKELL
NYWGNLVKCYSENNQWVNQLKNKIDYWKLEPDEPLFIVTTNQTFHGEKFT
RQIKKLNKDYVFLADECHRLGTDNLLNSLPSVERRLGLSATPSIYMSEEK
TDRLFNYFGGIIAEYSLEKAIEDGKLTQYEYHPVKVRLSDDEMEKYKELT
HKIVKMLGNDDENSLEGLSLEAQMLLFKRARIIYGAYDKIIKLESLLDKL
KDQRNMLIYCGATSLSEGIAGDDEGNELDQSNTEASKKQIEIVNQMLKGK
GILAAQYTKDENGNERQDRIDAFKNGVIDTLVAIKALDEGVDIPEISIGI
IMASSGNPREFIQRRGRLLRKSAGKEIAIIYDMVVLGEESEYDGINMTEL
KRIGEFSKAAKNRNEILDEYQELFDRYLEEKEDE
>LSA1657 Putative deoxyribonuclease, TatD family
MQIFDSHTHLNDTPYAGQEADFIQQAADLGVTEMAIVGSDTVLNDGALRL
AQQYKALSAIIGWHPESAKDYTKVQEAQLIEQLQLPEVVALGEIGLDYHW
DTSPRDVQRTVFERQIEIAKSLHMPISVHTRDALEDTYKILKETDVRDCG
GIIHSFNGDSEWLKRFMDLGMQISFSGVVSFKNAREVHEAAKLCPLDVML
VETDAPYLTPTPYRGKQNQPGYTRYVVEVIAKLREVAPEEIAAATYANAH
RIFKLGAI
>LSA0774 Putative ADP-ribose pyrophosphatase, NUDIX family
MSYEEKVLSEETLFKGHVIDLAVQQVALPDGQTASREIVYHHGAVGIIPI
TADGELLLVRQWRAPMQRETLEIPAGKIDLGETDLAKVALRELNEETGLT
TANLQQIAEFFTSPGFSNEKMTLFYTTALTPVANKRPLDDDEFLNVERLT
LAQAQAAVKSGLICDAKTIMALYYWQLQSK
>LSA0492 Putative bacterial type II secretion/competence system, ATP-dependent DNA helicase ComFA-like
MGQQVIACGRQFTAAQLADTQNNNYSLPQIKRRPAFLRVKHRLVCQRCQQ
VVPPQTCLPDGRHYCAQCLLFGRLVEGDWLYTVPECHLFENNIPKLTWEG
QLTPHQEKAAQAVVEVVQTQKRHVLTAVTGAGKTEMLFQGILVALQKGQR
VCLAAPRVAVCLELYPRLQAAFATTSIMLMHGEQTEPYRYTQLVICTTHQ
LLKFYHAFDTVIVDEVDAFPFVDNPVLATAVEQACKPQCALLYLTATPTP
AIKRAIAAKQMTVSELPLRFHGHLLPEPQRHVAFNWRAQLKKGRLPKRLE
RDCQTYLKTQQILLFVPQVRLLQPVANRLSTLLPAVRIETLHANDPDQIK
KITAFRAQQIQLMVTTTILERGVTFKNVAVLVLGAEHMVFNEAVLVQIAG
RAGRHKDYAQNPVHFYYQDYTRAIKGACRQIKTQNQRGRRLQSTV
>LSA0148 Putative DNA-repair ATPase
MIFKELKLINFRQFKGENKFVFPINDRKITLIIARNGVGKTTFLQAFRFC
FYGESPNVLKLPKSEELLNYSVENDMSEMDEQPLSVQVKFQHNGKDYIAV
RTVRFRMFNRKMQKLTKNSDDSFELWEETENRGAIKVEDGLKRIQEMIPT
GLAHVYMFDGERVEKPIGSTEFKNDLKDSIVGVLGLKKLEQARDFLGNKS
KSGSVIGQVHAKLVPIGSTEQEVLDRYASAEENITQLKQEIVIRQNQVES
LTKDIEVATEAQKSIEKLELLVQVKKIAESKISAQEREIEELRRRANDCA
VELLLKLEVAKTYKKYEKFIAKEEEQTEVFENLYQSVVEDILRRHKCICG
REVHTGSIEAEHLRELSVLPQDNANYLNALRSLYNSLANLPSLRKSITKY
HNQLVLAKKKLEELRKEGEHAIEKVIKKEEEIGAKNQVDIEHLRATKARI
LYNIDINEKSIESNQRVVNELSSELKKIQFNSQHNRNVNASLKMLNQLKL
EIEEELDNKKNIARESIEKNMNLVLTEVMDQHYEVELDSEYKLTVYKKVD
DKRLQDETEVLSTGQNVMMYLSFLKALLMTVEQHAEFDDIQSSGVIMDAA
LSNLDEEHIKQISSRILNSFDQLIFLSFKAQLRNELITGIHNNISCAYEL
SKDMMGNVVSRIIDTNNVEEYVNEDDEINE
>LSA0393 DNA mismatch repair protein, MutS family
MNHKILKTLEYDKIKQMLQGYAITAFGQEQIATLEPINEADLIQIRLNQT
KDGVDIERLKGGIPLPQLENIRPHLKRIEIGAMLNGSELAQIGRVLRATS
AVVRFFDDLEKDELELKALPELVAQFVTLPQLTERIRSSVADDGAILDTA
STKLRGLRTGLKQLEGQIRSRMASYTHGAKAKYLSDPIVTIRNDRYVIPV
KQEYRGQFGGVVHDQSASGQTLFMEPQAIMELNNRLRQLQIEEQQEIERI
LAELSEAIMPERHNILANAELLGQLDFVNAKAQLAKALKATEPLINAENH
VDLKQARHPLIDATKVVANDIAIGADYQAIVVTGPNTGGKTITLKTLGLV
QVMAQSGLFITAREESQVGVFSDIFADIGDEQSIEQNLSTFSAHMENIIQ
ILKQIDDRSLVLLDELGAGTDPQEGAALAIAILDQIGIVGANVVASTHYP
ELKIYGYNRPQTINASMEFDVATLQPTYRLLIGVPGRSNAFDISTRLGLP
NSIVDQAKQLMNDESQDLNNMITDLENQRKAAETEYQALRHELTEATDLH
QQLSTAYQQFFEDRETEMTKAKEKANAIVEKAEVKADKVITKLRDMQMNQ
GAQIKENQLIDAKAELGQLHQETTLKKNKVLQRAKRRQTLKVGDDVLVTS
YGQRGTLIRQVDSKNWEVQMGIIKMKIANDDLEKQKVVEDNRPQRHVTTV
NSGGARHVKAQLDLRGKRYEEAMAEVDQYIDAALLANYQQVTIVHGKGTG
AIRQGVQEYLQANRQVKKYEYAPANAGGNGATIVTFK
>LSA0385 Putative ATP-dependent DNA/RNA helicase
MDNQFTQFNLKPEIITALDEMHFTKPTAVQRRVIPAINAGKSVIGQSQTG
SGKTHAFLLPLLNKLVPEKDEVQIVITAPSRELAYQIYTAAELITKHMNG
DIRIGRYVGGTDKQRQIEKLQQHQPQIVIGTPGRILDLITSKALKIYTAK
TLVIDEADMTLDMGFLKPVDNIASRLPEDLQMMVFSATIPDKLQPFLQKY
MHNPVIEEVKNETIISPTIENWLVPTKGKALNQTIYSLITMGHPFMVLIF
ANTKSKVDDIHHYLQSQGLKVAKIHGDIPPRQRKRIMKEVHNLDYQYVVA
TDLAARGIDIEGISMVINAEVPREDLEFFVHRVGRTGRNGLKGTAITLYG
PDDEQAVAQIEAMGIKFTPKAFKDGELVTSYDRNRRKKRVATTHELDVNL
KGFVKKAKIKRKPGYKKKIKEAIQKDARQKRRIEQRVEMRERKRNNKKQN
Q
>LSA1097 Putative ADP-ribose phosphorylase, NUDIX family
MNDLLTQIQRLAEQSAAFNDRQKYQMISELMAQQKRPLYRAVNDQCHLSA
SALVFKNNQLLMVRHPYLHQWLLPAGHVELSETPVQTALRELLEETGLVG
EQAQLVDANLIKIPDNPLKKQAAHMHIDYRYLITASKQPSAAAELPNQWV
SQDEVPAEFQPYFKLQ
>LSA0944 Putative ribonuclease H
MIKLYTDAATLGNPGPSAAGILIVTAKKQYQFSIPLPPVDNHIAEFMAVQ
LGLEKIATLALTESLLQINVDSKIVCQSLEKQYAKHYQQYVDQIIALEQP
YSLVLHQWLPDRQNKGAHHLAQQALKK
>LSA0921 Putative adenine-specific DNA methyltransferase
MTYQLYATMASGIESITAKELQNLGYETRSDNGRVYFEGDLADIAKTNLW
LRSADRVKIAIGQFEAKTFDDLFEQVKALPWDQYLPLDAAFPVAGRSVRS
TLHSEPDVQAITKKAIVDKLSTVYHRRTRLAETGSVYPLEVSILKDMVTI
SLDTTGPSLFKRGYRLEKGEAPLKENFAASLILLSRWQPDMPFVDPTTGS
GTIAIEAALIGRNIAPGMHRKFAFEDFDWIDATVLADAKADAKAQEKPDQ
ELEIFGYDIDQNMVDIAKLNANEAGVLHDIQFKQLAVKDFKTDLTNGVII
ANPPYGKRLSDQTQARVLYKEMGDTYRSLKTWSKYILTSDLQFQESFGQR
ATKRRKLYNGRIQTDLFQYWGRPVWPRAEKAEK
>LSA1661 Putative nucleotide hydrolase, NUDIX family
MTKRRYNLAVIRYRGTLLLLNRLKKPYAGLWNGIGGKNEGDETAEMGMRR
EIFEETGLNQNQYTLYNTGWLDWHIDGEFIAGIDVFLAEIKESVQLPLYP
VGTREGILQLFDEQWVLSEENYGIVADLKVILPEVLAKNVKRYYTDFHGE
QLIAYEAFPIEEGN
>LSA0586 Site-specific recombinase, prophage lsa1 integrase
MATIKKYTKDNQEFYMFQAYLGINPQTGKEKRTTRRGFKTRKEARLALSM
LELQADSGQLDQQPINLTFEDVYQQWWAGYINTVRESTMYKQKKVFQNHI
LPAFGKYRIRTITTSQVQTTLNKWFKQTDYSFKPWFNYTSAIFKYAILQG
YIKDNPCTRVTMPKKLDKEDTLNFWDKDQLKTFFNGIDPVNDLEKYTLFR
VLAFTGIRRGECLSLTWDDLNVQKATLDINKTLTHGDKGRLLIQPTKTKK
GTRVISLDESTLLYLKKWHLEQRRMYLMLGYNINKSNQLIFATSKNTFKS
LNTPSKWLRALIDDANKSGANLPSITVHGFRHSHASALFSAGASIKEVQE
RLGHEDAQTTLNIYTHVTEKQGQEAVQKLVNFLNF
>LSA1299 Putative adenine-specific DNA methyltransferase
MPKSAVETLFDLIDQTTTLIEQNLETTYLDALTESIANIADGGRVKVEDN
LPDAQTVAQLETIYATVKLNQFDAETIRQALQLATLKGLRQVKVEPNKQM
TPDAIGYLVAYLAEVFGGADQIKTVLDPVIGTGNLLATVMNHIQNLTGNK
LQGFGVDNDDSLLELAGISSELQGLDTTLFHQDAIEPLMVNPVDIAVADL
PIGFYPIDERAADFETHAASGHSYAHHLLIEQTMHYVKDGGFGFFLVPNV
ILETDEAKQLVKWITKHVYLQGLLSLPVNLFKTKEGQKAILVLQKQGAGA
QQAKQILLGEFPNSNDQKAFAAYLQQIRTWHKENIN
>LSA0924 Putative site-specific recombinase, phage integrase family
MRKSRTKKGKKLNVQPLRTKDEIEDMKVILRHSQMGSRNYLLFLLGINTG
LRCSDIVQLKVKDVIEDNPVIVEQKTGKWRQISLTSLRPYISLYIQNNEL
TGNDWLFGSRVGDSHITVNGVYRMLTEAGKKLGRNDIGTHTMRKTYGYWF
YKQFGDVRSLMIDFGHSTQETTLHYIGITQDEVLSKKQQLAIGL
>LSA1534 Putative ATP-dependent RNA helicase
MSVSPLFQALWDEQGFKDLSPIQEAVYQPLKQDKSILGLAPTGSGKTLAF
SLPLLEKIMPGEGLQVLILAPSQELVIQTRDVIQPYAKAIDCNVQAITGK
ANVKRQIERLKTKPEIIVATTGRLLELSEQRKIKFHTLQAIIMDEADELL
TDSGLSETRHIVQESPADVQLGFFSATSTDTLTDLETWFGVPIETIDVRS
IDKTGGDVLHAFIPTGNAQKVNVLRHLAHQKNFRGLVIFNQSAQLLQAAQ
TLKHQKVTYAALSGQGRQTERQKALKDFREGKIQLLLATDVAGRGLDITD
LPYVINFDVPNAKITYIHRAGRTGRMGREGTVLTLGNQHDGRNLRKLLAP
EYDLVTRYLVGDHLEETKPAVVKEAAPVQKTATTPTPQPTKTPVADDRPM
GERSKAKVAKKPLPTRQPAEPLKPKRKKNRKRDQKNKGYHKKNKDLTV
>LSA0809 Putative DNA alkylation repair enzyme
MAELLKDIYTEAFLTTFSQQVQEVYRPFKAQQFVRAVLADNWADLTLKQR
TRQIAIVLGQFLPQDYSEAIALLEQLAPDCQGFAYLFFPDFVVVYGTRPE
DWALSMHALEIFTQQSSAEFAIRTFILTDPKRAMVQMTQWAQSANAHVRR
LASEGCRPRLPWGESLPVFKQDPTPVLAILERLKNDPELYVRRSVANNLN
DIAKDHPQLVIETAKKWQGESEAVDWVIRHGCRTLLRKNFLTVQTLFGYA
ADSPANPLVLSATIKTTATTVAIGDKLAFHYQIRFRPEAKLLVRVEYAVD
YVKANGQQSRKLFKLAEKEIDGRQGLSGERQINFKDLTTRKHYPGQHNVA
LIVNGREVAKTAFEVV
>LSA1854 DNA alkylation repair enzyme
MMLIFELPIHPENQAAMARYMQYQFTFNGVKATERHAYERDFWPAVKQLP
AAELMVIIKALYAREAREYQYVAIDIAARAVRKWQRSDLLQFAELVTEKA
WWDSVDSWKRVFSEYIKRHPAEFEWVGQLFAQKDNFWLRRVGLILQLGFQ
DATCIDYLQTAIEDDQTTPESFIQKAIGWALRDYAKTNPEWVIDFVDTHT
LSALAQREALKQL
>LSA1266 Putative endonuclease
MTEKAYYFYVLVCADRSFYGGFTTDVTKRAATHNAGKGAKYTKLRRPVRL
LYYETFADKSSALKAEYAFKHQSRLKKERYLIAHGIESTQF
>LSA1656 Hypothetical primase-related protein
MKKTIQEVIVVEGRDDTKRLREVFPDVDTIETRGSAINDEIVEKIALAQE
KRGVIVFTDPDFHGEKIRKIISQNVPGVEHAFLPRSEAKPEKMGGSLGIE
HAKPAAIKQALENLLTQDEDAVEQISQSDLLVAGLIAGPSAKARRERLGE
VLHIGYTNSKQLYKRLKMFQVSQDEFGAALRQINEELGD
>LSA1476 Putative A/G-specific adenine glycosylase
MTPSEREAFQTAFMAWYDEHRRDLPWRQNQEPYRVWLSEIMLQQTQVQTV
IPYYERFLATFPTVEDLSAAPEELLLKTWEGLGYYSRARNLQKAAKQVVD
DYQGKWPQTSAELEKLAGIGPYTAGAIASICFGEVVPAIDGNAFRVFSRL
LKIDADIVNPKNRSIFYDAILPLIPKDRPGDFNQAVMDFGSQVCTAKNPT
VGDTELAPFFRSYQDGTLLDYPVKTKKAKPKPVALFAVVIESEEGFLFQK
RPSTGLLANLTTYPLVMAEDLQDGESELLMPEEQMTRIEAYFKEAYGLTL
AHLKPVPVKPVTHVFTHLKWTITLLSATIAKDSDLAFFPGEWYSKAALAE
IAMPTVQKKMAQRFDSL
>LSA0143 Putative adenine-specific DNA methyltransferase
MNKNPLVKPFVKWAGGKRQLIPQITKYMPKTFGRYYEPFVGGGAVFFQLQ
YNKSTINDFNTELFLAYNAVRDNIDELISNLKIHEANTSSDYYYEVREWD
RNGIIDTKSNVERAARFIFLNKTGFNGLFRVNSQNQINTPYGKYKNPAIV
NEIVLRHVSKFLNKSTIKIINGDFEDAVKGARRGDFIYFDPPYAPMVNDR
QSFVGYTLNGFGADEQERLRDLVDRLTAKGVKVMLSNSSVPYIHEIYANY
KDTTVIVPASRSINSKATGRGKVDEVLIMNYNYLDEN
>LSA1720_a Hypothetical protein (C-terminal fragment), authentic frameshift
MLLPGVELSVKEGSNGIHCLIVFKNEDWISGDTEKINQFLDEVFKGIDNR
EKENTRCNMDLEHTVKCLDSYNNDYFIMMAHIEQKSGFLKECNGGLITSL
SSKKWFKDNILGLQKGRARKEMKKLKGWMGYEIPYIEGSDCKSVEDIGKG
NPCYIKIGDGNFDSVVLAFKDNQNRISLSQKKYNHGYIKSIQFIGGKLDA
QEILLSPELNSLIGIRGSGKSSIIESIRYALDIAPSTADKEYKNDVVKNL
LESGGQIILNLQDDYGKEYKVKRVYGETPHILDHNDKEINISINTILQTP
LYFGQKDLSYMDSGYELNLLNKLVGENLSGFEESLRKVNNRLNNDVSKLL
DLEEEIEKIPELENSLSDIRHKIKIFEDKGLAEKLIKQVNFQKDKNKIQR
INKLITDFYKEIQLLMQSNIVADLEKSKNFSSIEVPNIATKVDREVNKTL
QMKDKIEKIAAEITTSSNLMTEYLKDIQETINSLEEEFAEVKREIDIPNL
DPDDFSKYKMSEEKIAEKIRNARSKSEKKIEIRSKIKGILEERNNVLLDE
FNKYKKSIEEINSNQSALQLSIEFKGNKAVFLNDLIQNFKGTGINQTSYK
AISENFSDFTALVEDVLVDNSKRISDLISDTQLLKLKERVRTAYSKLINI
RTNNKIEINYHGKPIAKHSIGQRASALVLFILSQKKNNLIIIDQPEDDLD
NQVIYNEIITNVKSRKANVQFIFATHNANIPVLGDSEQIIAVSYDEKQII
TEIGSIDKKKIQTKIVDIMEGGQEAFSKRTQIYNLWQKG
>LSA1162 DNA-repair protein (SOS response UmuC-like protein)
MYDYTDEPRRIILMIDSKSFYASVESVKRGLNPLKSILVVMSTAKNAGSG
LVLAASPRAKQLFGISNVTRATQVPVHDKRLIVAEPRMNLYIEENLKINR
IFQRFTAEEDIQPYSIDESLLDITTSWHLFGQTPYEVARQIQLTVKKETG
IYLTVGIGDNPLLAKLALDLEAKHNHSLIAEWHYEDVPDKLWPVTDLARV
WSIGQRTATKLNQLQIHSMGDLAHTNPYDLKQKMGIIGSQLFAFSWGIDR
AIVHQKYTPKERSYGNSQVLPRDYFLQTEIEVVIREIAEQVAARLRAHRK
QACMISLGIGFSFSENESGVHSGFGRSLKIEPTNGNHEITTTAIQLFREQ
WQHQTIRHISLTCGQLIDDDVQQLDLFDPQLRHLKQHQLDQTVDEIRQKF
GFASLVKLSSKDKGATAIERAGLVGGHAGGNAYD
>LSA0273 Putative DNA helicase (C-terminal fragment), authentic frameshit
MQVSDFQSLNSGLPFTIDAATSYQFFLKTPVDAPLDKRIQATQQQLTSYL
QEQLMTIAKTPTTLTRLESLTETEQQQTFGRLIREDEPLAPLALKMVRYD
YQDLSEQLHDYQWLAFDQIIARQSTVDAVIAAQVYGYLTQRVFPKVKQVF
IDEVQDYHASSLHLFKQLFPKAQFTVFGDQHQSLTPHKIQFSKLPAIFPN
LKTQALRTSYRSSGAITALFSQLFPDLTDVHAVQPHDVQPTYLSATNDTD
YLAQIQAQIEQLPTDQTLAIITPAGQFDERLLKLKDVHHLSTETTTLPES
GAFTLPLTLAKGLEFDNVLLYDLINDYYTEPTVGRNRLYTAISRATHRLT
LSALGTLPNALNA
>LSA0543 Putative 3-methy-adenine DNA glycosylase I
MTTIQPAPMAFFTNRPTTEIARDLLGTHLLYTSHQGTLGGLIVETEAYMG
AQDTAAHAYNGRRTPFSEPLYHEPGTIYIYQLRSFFLFDIVTQAVDQPQG
VLIRAIEPTHGLAQMQRNRPNKPSVNLTNGPGKLMGALGIHDKQLTFKNV
ATAPLTIDLANRRQPRHITTAPRIGVNAKAASGQLPYRYFITGNPYVSGT
LKKDWDREQHGWL
>LSA0839 Putative DNA-replication helicase
MQQPLAYRMRPTNIDEIVGQTHLVGPQKIIRRMVDAKLLSSMILYGPPGT
GKTSIASAIAGSTQYAFRMLNAATDSKKDLQIVAEEAKMSGTVILLLDEI
HRLDKTKQDFLLPHLESGRIVLIGATTENPYITINPAIRSRTQIFEVHPL
NEADIHVAIQRALTDPQKGLGDEPVNLDETAEKYLAQVTNGDLRSALNAL
ELAVRSTPKNPETGLIDIDIAVIEECVQRKAITHDKDGDAHYDVISAFQK
SVRGSDVDAALHYMGRLIEAGDLPSISRRLMTMAYEDVGLANPQACARTV
EAVTAAKQLGFPEARIPLAVAVIDLCLSPKSNSAITAIDNALGDIRAGKA
GEVPAHLKDAHYAGAAKLGHGVDYKYPHNYPNDWVAQDYLPTKLLGSHYY
EAKATGKYEQVLKQQLERLRQASRHK
>LSA1615 Putative ATP-dependent RNA helicase
MKFSELGLSEPIMKAISRAGFEEATPIQGETIPLALAGKDVIGQAQTGTG
KTAAFGLPILQNLDLDNPDIQALIISPTRELAIQTQEELYRLGRDRKAKV
QVVYGGADIRRQIRSLKDHPQILVGTPGRLLDHINRRTVKLDHVKTLVLD
EADEMLDMGFVDDIESIIKQVPEKRQTLLFSATLPAPIMKIGKSFMTNPE
MIKVKSKELTADLIDQYYVRAKDFEKFDIMTRLFDVQSPELTLIFGRTKR
RVDELTRGLKARGYNAEGIHGDLSQQKRMSVLKSFKAGRLDVLVATDVAA
RGLDISGVTHVYNYDIPQDPDSYVHRIGRTGRAGKSGVSVTFVTPNEMEY
LRIIEELTKKRMLPLQPPSEKEAFKGQLAAAVADINSMIEKGQLAKYNEE
AEELLKQFSDVELASVLLKTISKEAVPVKITPERPLPSRKKGGNRGGNRG
GSRGGNSGNRRGGNGGGYRGGNRRSSGDGKRRGNDSSKDGRRSSSNGDSS
KRRSNDNRGDSRKKTDGRSKRNFTIRTNDK
>LSA1160 Hypothetical protein
MNKVDVEKLFQGKVISQDQNQVHIQLQDSRKLLELSIENDVLALIEQHRD
YALNILQNLKRKTNRKVTKESITINHRNYKIFI
>LSA1593 Putative nucleotide diphosphate hydrolase, NUDIX family
MAQLKLVTLKKLLADRWLNYYEATYQNSKQEEINYHFVSREANLTTDNLK
HPVTASAVTMFCLNRDHSQVLLLRQFRLPLNDYVYGNSAGLIEPGETVEQ
AIERELVEETGYQGVHIDQIFNPSYSTPGITDGAITLAICTIDQIPSQNT
ALESAEELTSIWVDKKQAAEILASGKISGRTQLLLWQWVNNRLN
>LSA0076 Putative DNA invertase (Plasmidic Resolvase)
MKYGYARVSTMGQNLDTQIEQLKQADCDKIYSEKFTGTTTDRPKFKLLLK
KLKPGDTLIVTKLDRFARNTIGALSITKELFARNIKVTILNMGTIEDTPT
GNLMLMMLSAFAQFERDMIVTRTQEGKEAARMNNPLYHEGRRQKYTDQQI
EGALKDVEKGLTIQEISLKTGISISTLRRRAVKA
>LSA0146 Putative adenine-specifique DNA methyltransferase
MVIIMKQVYKDELVKLICSDTFECMQRFPSNSVDVIIADPPYFLSNGGFS
NSGGKMVSVNKGEWDKINDVKPEVFYTRLIRSADRILKKDGTIWVFGSMH
NIYILGYLLPKYGFKILNNITWQKSNPAPNLSKRMFTHSTETIIWAKKES
GKQFFNYDLMKELNHSSQMKDVWTTPTINNYERRFGRHPTQKPLSVIDRM
VKASTDSGMILLDPFVGSGTTAVAGARNGIRTIGIDNSQDYLNIAIKRVS
NFQEEKLGKIK
>LSA1074 Putative adenine-specific DNA methyltransferase
MRIIAGEFGGRRLKAVPGMKTRPTTDKVKEAMFSMLGQFFDGGQALDLYA
GSGGLAIEAVSRGMDHAYLIDRQYAAIQTIQDNVAVTKMPECFTIWKMPA
EKALLKLADAKEQFDLILLDPPYKQQQMLVELQQFVKMDLLKPGAIILCE
TDTSLTYPEEIPHYTLKRQQNYGITEVAIFEFIG
>LSA0992 Putative DNA processing protein, DprA/SMF family
MLTKNQLLLKVHLAAGFGTISELRLAAWLSTSHNWALSALEIAQIARLPE
RYWPTFQASFQSTTLQRQCIDHEVRTTYLTILDKDYPQRLLETYLPPVLL
FYRGDLRLLKQPCLAVVGARQATHYSKQSLEQLLQGLTATTIISGLAQGA
DAMAHEVALQRGLAPIGVIGTGINCSYPPQNEHLQQVVAEKGLLLSEYAL
GTPARRYQFPARNKIIAGLCHSLIVTEARHKSGSLITANLALQANRNVYA
IPGRIDQSLSQGCNQLIAAGATPLLDKNILIEELRYFD
>LSA0389 Hypothetical protein
MRLMGFDVGSRTVGIAVSDLFGWTAQGVEIIRINEDESEFGLDRVKELVA
QHQVTGFVLGLPKNMNNSIGPRAVKAQEYGAMLTELFPEIPVDYIDERLT
TVQAERMLVEQADTSRKKRKQVIDKLAAVMILQNYLDAKGPLTKQGY
>LSA1071 Putative bacterial type II secretion/competence system, protein ComEA-like
MWQDYWQRYRRFWWVPCLVLLGIIAGGFYWHQSQQKQKVTQNEQLLATSA
SKTKPATKKTHQAATKKKGGFVDIKGAVVYPGIYPITVSETRLFEVLKNA
GGPTDAADTKRLNLAQKLTDQLIIYIPKKGEVVTDQELIQAPQQIATTSE
RTQEQASTGTSANASSTSDTAKIDLNQADSTQLQTLNGIGPKKAEQIIAY
RDEQGKFKQIEDLQKVGGIGPKTFEQLQSQICVN
>LSA0623 Putative metallo-phosphoesterase
MKFIHAADAHIDSPFVGLKKASTNLWTTIHESTFTAFEKLVQTAIDEAVD
FVLLVGDSFDQEAQSLQVQNFLKQQFERLNAVEIPVYLSYGNHDYWDANQ
IHFDFPKNVHVFTTDVEAKTLTTKAQETVTIVGFSYGQRWLAADQTAQFP
PRAATTYTIGTLHGSQSTASDADHYAPFTLSELNQLQYDYWALGHIHKRQ
ILQARPYVVYPGNLQGRHKNEPGEKGFYLVTAQAGQFELEFKPTTVIEWQ
RQRFEIPENPSLNQLQEDLRTQLLQSETASLVALELTHAERLSSDLIQRV
NNGELLAYLQTDLEASAIMHWPYALKLQFASQQQFSQIDQAHWQSAADKI
FTPDYILEKAQPLLKEKFIREALEEPDFQDDLKTAAETILQEKKLED
>LSA0912 Putative ATP-dependent helicase, DinG family
MNRETIYAVVDLETTGTNIKDGDRIIQFGCALVQNGKIIQTISQDVNPLR
DVPTKIQHLTHITADQLELAPIFEDLAPTLVEILSGTVFVAHNINFDLPF
LNGELTRVGLQPLDLAGIDTVELAQIILPEAPSYRLQDLTQLLEIEHDNP
HQADSDALVTAKLFLKLSARLQALPSVTLNRLSELGEGLLRQTGDFFTDT
AQQMREKSQPLPNELLIQEEIALRKPAPVDFEIYPGSSYAAQYPVTEAEK
KRLLKPHLKWRKAQATMMDLIHDNFESETPEPLLIEAATGLGKTIGYLLP
YSYRMSRDHKLVVATSTTLLQEQILTQAKPLLERLVGRQINAAVVKSASH
YIDLHRFELSLRLPHKNRMIRLLQMKILVWLTQTTTGDLDELNLTSYKTP
FFVSIQHRGLASLNPQAPFYHEDFLRRLTHRQQQAELLVTNHAYLASHAD
EQQIWGPKPYLVLDEAQNMVFNVQTISQETWSLSSWQFWAQKGLQYTTGA
QTNNLVRLFPAETPQNRSLKLLHKTLGKLTRTLAHLETYLTEQFEPDEPT
DGQTFSERYLNPDEVIQFVNASQREFGQLNRELLTIQDHFLALRYALEDQ
LARYTESDLAIWQSFENELNLLLADVDHYQRFEQLFIATKPQERHALAIQ
ITRPSQPSQLPQFKLHWQLLSAGPQMQQVLSHFEPVTLTGATLAVNGHFD
YLKREFGFTEEQALQTKKLRSPFRFKQQARFYIAEDGPVQKELTPSDYHQ
QVAAQVMTLIANNPHQTLILFNANQTLEQVYYALGRAGLSLDREVLAQGI
TGSAEKITKRFMLGHDSVLLATSSFVSGVDFPEAALEMVILVQLPFDAPN
ALQTRVRYAQLAAQGINPFKAEALPKATIRLRQSFGRLIRTPNDHGLFIC
LDPRLLTTQYGQQMRRALPASLPQKAAPVQTIRELSDLFWLNSD
>LSA0916 Putative DNA repair protein, endonuclease III
MLSKAKTRWAMTQLYDLIPDAKGALIADSPFQLLIAVMLSAQATDVSVNK
VTPQLFEHFPTPASFAAADLTAIEADIRSIGLYHNKAKHIRTCCQQLITD
FGGEVPQTHAELEQLAGVGRKTANVVLGDAFNVPSFAVDTHVSRIAKRLT
ISAENASVRQIETDFQTKLPQKEWVQAHHTLILFGRQVCTARNPKCNQCP
LLSICPAGQRILQERG
>LSA1028 XerD, Site-specific DNA tyrosine recombinase, XerD
MDDLIQDYLHYLKIERGLSENTRQSYRQDLKQYQQFLVSQKLTSFTEDRF
IVLGFLQAQTTAQKAQSSITRSISTLRKFYQYLAREGRIQKDPMLQIDSP
KQGRHLPAVLSSEEIERLLKTPDTSTPLGLRDRAILEVLYATGLRVSELV
HLKLTDLHLSLGLIQTLGKGDKERIIPIGDVAVDWINQYLERSRNRLTKG
KDSPYLFVNFHGNGLTRQGIWKNLKAIVQAAGIDKDVTPHTLRHSFATVL
LENGADLRIVQELLGHSDISTTQIYTHISKKHLTEVYQRSHPRD
>LSA0382 dinP, DNA-damage-inducible protein P
MAELFKIPLENDTSRKIIHIDMDAFYASIEEREQPDLRQKPLIIARDPSD
TGGKGVVTTANYVARQYGVHSAMSAQKAAELIPKHQAVFKTPNFPLYQSV
SAQIHDIFHTVTDKIEPIAFDEAYLDVTENKLGLTHTIEVVAYLQKAILE
ETQLVSSAGISYNKFLAKMASDYRKPAGRTLVLPEQAIAFLSRLPIEKFR
GVGQKTVPKMQDLGIMTGADLLAQSEMFLMQHFGKLGYGLYRHVRGIDNR
PVEYQRERKSIGNEHTYGQPLISEEQVQVQLKSLAVELAQRLRKNQKHGL
TVVLKVRNRQYETITKRKTLGEYVGNAAELEAIANQIWQSIGQAEVGIRL
LGITVTNLAPQTFENITLPLYDWEND
>LSA0001 dnaA, Chromosomal replication initiation protein A
MPDLQELWNYLQEKFQTDLTTVGFNAWIKTAKPLAFRANELLIEVPSVLH
KEYWENNLATKVVEGAYEFAEIELTPIFVLPGESDNLTPLEPEEEHVLTK
AETPTFLRETHLNSKYTFDTFVTGKGNQMAHAAALVVSEEPGVLYNPLFL
YGGVGLGKTHLMQAIGHQLLESKPETNVKYVTSEAFANDFINSIQTKNQE
KFRQEYRNVDLLLVDDIQFFADKEGTQEEFFHTFNDLYNDKKQIVLTSDR
LPNEIPKLQERLVSRFKWGLPVDITPPDLETRIAILRNKADAEHLEIPED
TLSYIAGQIDSNVRELEGALVRVQAYATMQNAEITTSLAADALKGLKLNG
KSSQLSIAKIQSVVAKYYSLTVADLKGRKRVKEIVLPRQIAMYLAREMTD
SSLPKIGQEFGGKDHTTVMHAHERISQSLTTDQNLKDAILDLKNTMKS
>LSA1402 dnaB, Chromosome replication initiation/membrane attachment protein B
MSDAFDYLSPKDGFMVTKANYLSDFDQTVVTYLYQPLMGAVAYSLYLLLW
SQSTQAKSQTTFQTHATLLNLLGVDLPAFYDARNKLEALGLMRTYQKNNN
TGRNLVYELYAPMQPHIFFNDDLLSVILYESVGEKRFIELREHFKLQPVR
SKEYEEVTKNFLTVFHVQNDHLTTAPTAVAEAQSTYQQKKAQKPSFTSVE
LRTFDWALLQEVVAQNQIDTDEILRNEQRLFNLHYFYGLDEMELGRLIGL
TMDVADSRVNMDALEQNVLNNYTRRHSVQNNSEQPAKKPLETLQKEWQKA
GFNEKEMQWLTESQQYLPVDYLEYLKQKNHGFVAKNEIRALRDLQNRYIF
NNDVLNILVVYIISQYEGLTQALLDRIANQWAQQGVKTPADAILQIRDFQ
TKQETKQTKRQPRYQAKTKQETVPKWAKSDYQAPQTTSSKADQQEIDQLL
KKIREGRES
>LSA0012 dnaC, Replicative DNA helicase C
MNNELIEHTPPQNNEAEQAVLGAVFINSDALVEAMEYVTADDFYRKAHRL
IFETMVELNERGEGIDAVTIKSELDACNQLEDIGGIGYLAELADAVPTAA
NVVYYAKIVSEKAMLRRLIQTAQNIVAKGYAQDEDVTDILDTAEQEIMAV
SEQQNKAGFKSISDVLTTSIEHIDKLYQEEESITGLSTGYPDLDKITAGL
HEDELIILAARPGVGKTAFVLNIAQNIGKMTNENVAIFSLEMGAEQLVNR
MLCAEGSIDANHLRTGQLEESEWQNLIIAMGSLSKANIYIDDTPGVKMAE
IRAKCRRLAKEKDGIGLIVVDYLQLIEGSGQENRQQEVSAISRQLKKLAK
ELRVPVIALSQLSRGVEQRQDKRPVLSDIRESGSIEQDADIVAFLYRDDY
YRDEPGEDGEDGGSQPAPDPENADVGEVEVIIEKNRAGARGTVKLLFVKT
YNKFSSISYSQGEY
>LSA0915 dnaD, DNA replication protein DnaD (Primosomal protein DnaD)
MNELTAFIEGGQLSVSRLLLQHYQTLRMSSDELVVYLQLSDFASQGDTFP
DLAVIGERMGLAPTQIYELIHQLLKKKIITLNSTVNEQGQPVDHYDLTPA
LSKLSVLAVQQNQAALNSQETNQRLSVFNQIEQTFGRPLSPLESEIISNW
LDLDHYSAELIQLAVREAVLNQVYSLKYVDKILLNWQKQNIQTKEDLQAY
QKAHPRR
>LSA1034 dnaE, DNA-directed DNA polymerase III, alpha subunit
MAFVQLQVKSTYTLLESTTKITDLVTAAKARGYQSLALTDKNVVYGLVDF
YKAAKAADIKPLLGITIEVGGLIQTDERFPLILLAKNLTGYQNILKISTK
IMTQSELVPFEAVQSLLQQLVVITPSQDGELVRLLLQNDATAAQTYIERL
KAVVDADSLYLGISAKQAASRQRVPLGQLSQQTAVPLVALGDVRYLEPED
AFAVQVLQHIKAGTQVNLQTPQAPGGYFLEDVQQATAAFEALQLAEAVAN
TQKIAAQCQVDLSFKRAQLPQFETPAGQSAATYLKQQSQAGLQARFKTQP
IPETYQTRLDYELQVINEMGFADYFLIVADVMQYAHQQNIMTGPGRGSAA
GALVAYALRITDVDPIRYQLLFERFLNPNRANMPDIDLDIPDNRRDEVLD
YVYQKYGQNHMAQIITFGTLAAKMALKDVGRVFGLSQFEMSAWSKAIPNV
LKITLQEAYDQSQAFKNLVADSQQNRLLFETAQRIEGLPRHYSTHAAGIV
LSQAPLTETVALQSGGDEIELTQLPMGNVEELGLLKIDFLGLRNLGILAN
IVKLVSQQTGQPFNPQNIPLDDPATLALFQQGDTNGIFQFESTGIKNVLR
RLKPTSFEDIVATDALYRPGPMENIDTFIDRKSGKVPVTYPDDSLAEILQ
PTYGILVYQEQVMQAASKMGGFTLGEADILRRAMSKKKKAVIDASRTKFI
EGALALGHTEQAATTVYDYIEQFANYGFNRSHAVAYSKIAFWLAYLKVHQ
PEAFFAAVLNAVLNQGTKTKTYLAEAKKRQLSVLPPDINLSQRYFKVTDA
GIIFGLYSIKGLRRDFVAAILDEHQTGGPFKSVLQFLQRLDAKYLKKEAL
VALIYSGAFDQFNPNRNALLMNLDDLLDSVKLAGDNMSLFEILAPKEKTV
SNLTLTERLDKEAEYLGAYLSGHPVEKYERVRRYYHVPEVSDLAPNQNVR
LVLFVRRIKVIRTKKGEQMAFVTGQDATGEISVTLFASVYRQVADWLTKE
QVILVIGKTEQRQELQLIGNQIMLAEQAQKGLPKATLYLRLSADLTREQQ
QKMYQLLEKSRGPIPVILYNSATKKSILLNERYWIANDEKLTTALTTLLG
PTNVILKGFS
>LSA0883 dnaG, DNA primase G
MAGKIPNEVIDEIRSQTNIVDVVGQYVQLKKAGKNLFGVCPFHDEKTPSF
SVSEEKQIFHCFSCGRGGNVFKFLMELEQISFPEALTKVADFAGVTLADS
YKPTAVHRESSEVTQFKQLYQQANELFKHILTSTVAGQPALDYLHERQMT
DALIETFSIGYLPDQSDLLLTFFQNKDIPYQVLRQSGLFIETQTGKLHDR
FSGRVMFPIRNAQGEVIAFSGRVLTKQPDQPKYLNSPETVIFNKRKVLFN
YDLAKQTIHQSKKVYLFEGFMDVIAAYSADVVNGVASMGTSLTTEQLNLL
AQQAQELVVCYDGDQPGIEAMKRAINLLQQHTTLELSVVVLPGGVDPDEY
VRQYGGPQFKETLQNGTETPIAFELRYLKQGLNLDNEKDQLDYVQQALEV
VARVESPLAIEVYLKQVEADSGITLDTLKRQLQTVRVKHATQVPINQVGQ
PEAPPYFDDFQAPPLPPEEMAGAFGDPRTIAPKRQPKRLTRIEHAEQEIL
HMLIHNEDVRLQLENNADFSFVHTPYQLLYELWRSFIAEGQPADIAGFTS
YIPDDLQQLVVQIDLLDLPEEANQEALNDCLAVIGKNSIQERLKEAKIAL
KEATKLGNHSEELRLTNEVIQLVSQMK
>LSA1401 dnaI, Primosomal protein DnaI (Helicase loader)
MENMGKDLTDYMNRQRLNQRFNKLVEEALQDPDVQAFIQANQAALSQETV
ARSAAKIYEYVNEKKKILNGETTLAPGYAPKLVLSNHFIDVSYEPTADLV
QKRAQAELKARVKSINMPKDIVEASLAQYDASERQVPLIEALKFVEAYRQ
APTDFHQGLYLSGQFGVGKTYLLGATANELALQGFETTLIHFPTFAVEMK
NAIGQNNVLEKVNQIKKAPILMIDDIGADALSAWVRDEVLGIILQYRMQE
QLATFFSSNFTMNELEKHLTTSQRGDEEPVKAGRIMQRVRYLAREVEVSG
QNRRLQSN
>LSA0002 dnaN, DNA-directed DNA polymerase III, beta subunit
MKFSINRALFIKTLNDVQRAISAKTTIPILTGLKLVLSQEGLTLTGSDAD
ISIEATLSASDEKNQLVVEEVGEIVLPARFFSEIVKKLPEDQMRIAVGNN
FQTTIRSGKSEFTINGLDANSYPHLPEIAGQNTFSISTDVLKQLIHQTVI
AVSNQESRPILTGVHLVLANGEMLAVATDSHRLAQRKLPVALPSDANYDV
IIPGKSLVELSRTLADDAEDVEIRIAENQVLFKAGNLAFYSRLLEGNYPD
TARLIPTSSSTQIEFNAPVLLAAIERASLLSHESRNNVVRLTLDTEANTA
IIYGNSPDVGNVEEALQFENLTGESLEISFNPDYMKDALRSFGQTTIVIN
FTAALRPFTLVPSEDQEHYIQLITPVRTF
>LSA1339 dnaQ, DNA-directed DNA polymerase III, epsilon subunit
MNFVAMDFETANGQRDSACSIALVVVRNDQIVDQFYTLIKPETYFSSRNS
QIHGIYEDDVAQAPKFDQVWPHIAPFFTPQKLVVAHNATFDIGVLRSTLQ
HYDIPEPHYLALDTLTTSRRLYPQFKNHKLNTLCTNLEIPLENHHNALAD
SIACAKILIKEAQEFGTDPLKQVTKIIG
>LSA0336 dnaX, DNA-directed DNA polymerase III, gamma/tau subunit
MSYQALYRVWRPQRFDDVVGQETMTQTLKNAIITKQTSHAYLFTGPRGTG
KTSAAKIFAKAINCHYQKDGEPCNECETCRAITAGALNDVIEIDAASNNG
VEEIRDIRDKAKYAPTQADYKIYIIDEVHMLSTGAFNALLKTLEEPPANV
VFILATTEVHKVPATIISRTQRFNFKRITAADLFKRMAYILEQKEMTYDP
AALKVIAKAAEGGMRDALSILDQVLSFSDNHVTLENALDVTGSLTEALLA
DYVQTIHDHAPKAALQLLQQILAEGKDAQRFVEDLIEYVRDLLMYQQAPE
LVMANEMDLLDEHFKQLSDALSAEQLYTVIDILNETQQQLRFTNHPEIYL
EVATVRLTQQPVAPAAVSANVSAPADNEQVTQLSRQVAQLQAALQKLETA
GPSAPVQQAKPKPAKKISKKVNRKLIYPVLADATRTNLENLKEVWPDLLN
MLDVTKRAIMRVSEPVAASQSGVVVAFNYEILFERANNDQDLLTVLENGL
NRLTGNPFKVVLVPQDNWPEIRKEYLQNHAVSGHNNEDQPTTTEKAPAPE
VNEVVQQAQALFGDAVVVQKD
>LSA1338 exoA, Exodeoxyribonuclease III
MKFISWNVNGLRAVLKKDFMTTFEQFDADFFCLQETKMQAGQVELDLPGY
HQYFNYAEKKGYSGAAIFTKHEPLNVTYGIQQPEHDHEGRVITLEYPQFF
LITCYTPNSQNQLKRLDYRMTWENAFRAYVQQLGTQKPVIFCGDLNVAHE
AIDLKNDRTNHKSAGFSDEERVQMTTLLQSGFTDTFRYFYPDQTDIYSWW
SYRFHARDNNAGWRIDYFITSDELQPKLMDAKIHTEIYGSDHCPVELDTQ
DLFA
>LSA1405 fpg, Formamidopyrimidine-DNA glycosylase
MPELPEVENVRRGLETLAVGKTVSAIDIRWSKIIVNPDEVFTAGLVGQQI
TAVDRRGKYLLIRFGEQLTVVSHLRMEGKYEVVAKEAPISKHTHVIFEFT
DGQQMRYLDTRKFGRMQLIETGQENTVAGLKDLGPEPTPTTFLKADFYQR
LQKHHKAIKPLLLDQKVVTGLGNIYVDETLWLSHIHPETPANDLTRAETD
RLHDEIIAELELAINHGGTTVNTFLNATGHAGAFQEMLHVYGKKGVPCER
CGTPIEKIKVAQRGTHFCPKCQIKRNAK
>LSA0006 gyrA, DNA gyrase, A subunit
MANENGQDGRIENVNLSKTMRKSFLEYAMSVIVARALPDVRDGLKPVQRR
ILYGMSELGVTPEKPYKKSARIVGDVMGKYHPHGDSAIYEAMVRMAQEFS
YRYMLVDGHGNFGSVDGDGAAAMRYTEARMSKMAVEMLRDINKNTIDYVP
NYDESEREPAVLPARFPNLLVNGATGIAVGMTTNIPPHNLAEVISAIHIL
MDNPDATTADLMDALPGPDFPTGGLVMGKSGIRHAYESGKGTITLRAKVD
VEVKKNGRERIIVTEIPYMVNKAKLVERIAELARDKRLEGITDLNDESDR
DGMRIVIDVRRDMSASVILNNLYKLTPLQTSFSFNMVAIVNGAPKVLSLK
SILEHYLVHQEEVIRRRTEFDLKKAEARAHILAGLRIALDHIDAIIQIIR
SSKTGDTAKVLLMERYDLSDKQAQAILDMRLVRLTGLERDKVENEYNNLM
ALITDLKDILAKPERIKKIIYDELLEIQSKFGDKRRTELLVGEVLSIEDE
DLIEEEDVVIALTHNGYIKRLPASEFKVQNRGGRGIQGMGVHDDDFIEHL
ISTSTHEVLLFFTNTGKVYRAKGYEIPEYGRTAKGIPIINLLGINSDERV
QTVVNIGKEVKPEQALFFITRLGTVKRTAVGEFANIRSNGLKALTLHEDD
ELSNVLMTDGQQNIFIGTHNGYAVSFSETAVRSMGRTAAGVRGIRLREGD
YVVGSDLLIPGQEILVISEKGYGKRTAVSDYPIKGRGGKGVKTANITEKN
GPLAGIAAVTGEEDILLITDTGVLIRFKVANVSQTGRATLGVRLIRVDDE
AKVATMATVEAEPDEPETQTATTEPTVPTENVTDTGLAQVDDLLARAEAD
QNEPNND
>LSA0005 gyrB, DNA gyrase, B subunit
MADDQLNKETEAQIEAKEERAKSYDASQIQVLEGLEAVRKRPGMYIGTTS
SQGLHHLVWEIIDNGIDEALAGFATEINVVVEPDNSITVTDDGRGIPVGI
QAKTGKSALETVFTILHAGGKFGGGGYKVSGGLHGVGASVVNALSTELDA
VVTQGGKRYYIDFKRGKVQTPMKMIGDAPEHEHGTKVHFVPDPDIFTETT
IYDDKILTTRIRELAFLNKGLKLTFTDKRADTHEKLEFHYEGGIKSYVEF
LDEKKETLLDEPIYVEGEQNGITVEVALQYTNDYRTNLLTFANNIHTYEG
GTHESGFKTALTRVINDYATKQNIFKASDANLSGEDVREGLTAVVSVKHP
DPQFEGQTKTKLGNADARSVTDRMFSDHFTKFLMENPSIARQIVDKGSLA
ARARLAAKRAREVTRKKNGLEISNLPGKLADNSSKDPEISELFIVEGDSA
GGSAKSGRSRLTQAILPIRGKILNVEKASMEKILANEEIRTLFTAMGTGF
GQEFDVEKARYHKLIIMTDADVDGAHIRTLLLTLFYRYMRPIVEAGYVYI
AQPPLYRVKQGKMMRYIDSDEELQDVLGTLQPSPKPEVQRYKGLGEMDAS
QLWETTMDPENRRMLRVNVEDAEEADQIFEMLMGDRVEPRRLFIEENAVY
MDPKSIDA
>LSA1015 hbsU, Histone-like DNA-binding protein HU
MANKAQLIENVASKTGLTKKDATAAVDAVFGSIQDTLKQGDKVQLIGFGT
FEVRERAARKGRNPQTGAEIKIPASKVPAFKPGKALKDSVK
>LSA1068 holA, DNA-directed DNA polymerase III, delta subunit
MTIEQLQKELQQNQLAPIYLVLGQESALIEKARQLFKHYLPEEEQTMNFA
SYDLATTDVANALDDAESAPFFGERRIVFMQNPYFLTGEKVKNKLDQDLV
RFQAYLEKPQPTTSVVLFAPYPKLDERKKIVKQLKKVASLVSVEKVNERQ
VQQLVTAELKQQGMQIESEALALLISKTNSDYSQIMAELPKLMLYAQQTK
QITTAAVAELVSSSIEDNVFSLVPLVLQKKVGPVLTMYHELLLQKEEPLK
INAILIGQFRLLLQVKILFEKGYSQGNLASVLKIHPYRIKLAMQQIKHFS
KQTLAQAYLGLEEIEVKIKTGQGQPELLFELFMLQFAAKKVA
>LSA0342 holB, DNA-directed DNA polymerase III, delta prime subunit
MATLTIEQMQPKLVQQFAQIIARGQLAHGYLLAGAQGVGKMQLAQWLALR
LFCQQVNEDSQPCYQCPECQRILTGNHPDVVEIKPDGKSIKIADIRYLKQ
EVAKSGMESSQRLFIIEAAETLTASAANSLLKFLEEPAPNVYAILCTSNK
NLMLPTILSRLQVIDLANLPKEMVRQQFEEAQILPAQAQLLSHLTSDLTQ
AQQLLAEDWLMQVVAKITSWAQKVAQKDLESFVTIQTQLLPLLTDRSQQK
IALNLIGLWYQDLLNCRCDLAGDLCFSEYRTQLNTISQQMTAAEIVAQTE
FVLTAQRTFEQNVSCQNVLESLTLNLIAVA
>LSA1551 ligA, NAD-dependent DNA ligase
MGLAKLVEDYTQSEAASLAQQLRDQLADYSQAYYTQDAPLVEDHVYDELY
RDLEQLEAAFPVIVTNDSPTQKVGGQVLPGFTKVTHEIPMLSMGDVFSEA
ELAAFDQRLRKNTATEIEYNVELKIDGLAIDLIYEKGRFVRGATRGNGTI
GEDITQNLKTIKAIPQKLTRPVSIEVRGECYMPKAAFADLNQKREAEGQA
PFANPRNAAAGSLRQLDAKVAAARQLSAFIYTIVTFDDVQATTQSEALHV
LAELGFNVNPTSVVCQNMAEVQAFIEQYQGTRNDLAYGIDGVVLKVNDLA
LQRQLGNTVKVPRWEIAYKFPPEEAETVIREIEWTVGRTGVVTPTAVMDP
VQLAGTTVARASLHNADMLRDKDVRLLDTVLLHKAGDIIPEISQVVLAKR
PSDSQAYGIPTTCPSCGHDLVHLDEEVALRCINPMCPAQMKEQLTHFASR
NAMNIDGLGPRIITQLLEKELIHDVADLYRLTADDLAQLDKFKEKSINNL
LNAIDASRQNSLERLLFGLGIRHVGAKAARLLAEHFQNLAALMASDQETI
ITVDTIGTIIADSLVTYFADSQVQTLMAELEAVGVNLTYTGVTKAQAATS
DSYFNGKTVVLTGKLEQYTRGELKQLLEDNGAKVTGSVSKKTDALIAGQD
AGSKLEKAQSLAIPIINEADLDNYLAQ
>LSA1604 mfd, Transcription-repair coupling factor (TRCF)
MDLISMLGNTQQVQSVLENQKPGVRQLLTGLSGSAKTLFLATIYKQQRQP
LLIIESNMFQANQVAEDLANQLNGDQIYTFPVEEVMAAEIAVSSPESRAE
RVRTLSFLATGKKGIVVTSVAGMRRLLPTARQWRDSQTQIEMGSEVDPKI
LGAQLAEMGYHRDKLVGKPGEFAMRGDIIDIFPLDTENPVRIELFDTEVD
AIRSFEADTQRSIENLESVAIMPATDLLANAAQLEMAGEALQADYQQTAA
KITAKDDQKALAVNFETPISRLLAGERLENLALFVDYLYPDHTSLIDYFK
NSGLVVFDDYPRIQETQRVLAEEAANWQTDMLGSRRLLPAQKLLVDVHHL
MKQDQHPHLYLSLFQKGMGKLKLDTLGNMPTRNVQQFFSQMPLLKTEMSR
WQKQQQTVVVLVSDAKRVKKIDQTFHDFEIEATVTTKTKLVAGQIQIVQG
SLQNGFELPDLKLVVLTEKELFNTAPKKKVRRQTLANAERLKSYSELKPG
DYVVHVNHGIGEYVGMETLEVDGVHQDYITILYRDNGKLFIPVTQLDMVQ
KYVSAESKTPKINKLGGAEWQKTKSKVSAKIEDIADDLIELYAQREAEKG
YAFPKDDQLQADFENQFAYPETDDQLRSTAEIKHDMEKVRPMDRLLVGDV
GFGKTEVALRAAFKAVAAGKQVAFLVPTTILAQQHYENMLARFADFPVEL
GLLSRFKTRKEVTATLKGLEKGQVDIVIGTHRLLSKDVVFKDLGLLIVDE
EQRFGVKHKERLKQLKAQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPP
TNRYPIQTYVMEQNAGAMREAIERELERNGQVFYLHNRVSDIEQTVDEIQ
ALVPEATVGYAHGQMTEAQLEGVIYDFVQGKYDVLVTTTIIETGVDMPNV
NTMIVEDADHYGLSQLYQLRGRIGRSSRVAYGYFMYKPDKVLTEVSEKRL
QAIKDFTELGSGFKIAMRDLSIRGAGNLLGKQQHGFIDSVGFDLYSQMLS
EAVAKKQGKKVAAKTNAEIDLKLEAYLPDDYINDQRQKIEIYKRIRQMDT
EAAFTEIQSDLIDRFGDYPVQVAHLLTIGQLKMNADDALIETIKQVKDKI
QVVLSPKGSRLVSGEQIFEALSATRLKATVGFEQEKLSVTLIIQPKMKTG
DWLRELAIFVETLVEIEKKQLVK
>LSA0363 mutL, DNA mismatch repair protein MutL
MMGKIHELSEILSNQIAAGEVIERPASVVKELVENAIDANSTQVDIVVEQ
AGLQMIQVIDNGDGIEPEDVPVAFKRHATSKIATRQDLFKIQSLGFRGEA
LASIASVSDLTIETATADSLGTFAHFKGGLLEEQKTNPIRPGTAITVRDL
FFNTPARLKYVKTFQTELANIVDIVNRLAMSHPQIAFTLTNDGHLLLKTA
GNNDLKQTIAGIYGVTMAKKLLAVSASDLDFKLTGYVSLPELTRATRNYL
SILINGRFIKNYQLNKAIIKGYGSKLMVGRYPIAVLAIEMDPLLIDVNVH
PTKQEVRLSKETALMTLIEGAIKERLATENLIPDAMQNLKRTKTVDVDQL
QMNLNQITQERRHPSGTVRPVSPMPIPVKTVTPEIAETETPLAAPTAKAP
AITPERPLFEQPQALAEWDQKYATEAVGKPFGDQVVDETDESEENVVEPT
VRFPELRYIGQLHSTFLLAEGEDGFYILDQHAAQERIKYEYYREKIGEVS
TSVQNLLVPLVLEYPNSDALKIQEKTELLASVGIQLENFGQNSFVVHSHP
TWIGQGQEEMTIRGMIDDVLKDGRISIAQFREKTAIMMSCKQSIKAHHHL
DDAQAKALLADLAKTENPFNCPHGRPVLIHYTQKDLEKMFKRIQEPHHSW
EGE
>LSA0362 mutS, DNA mismatch repair protein MutS
MPQKTKETPMMAQYQKVKDQYPDAFLFYRLGDFYELFNDDAVKASQLLEL
TLTARNKNAADPIPMCGVPHHAAQNYIDILVDQGYKVAICEQMEDPKTAK
GMVKREVVQLVTPGTVMDEKAGHAKQNNYLTAVVAQGDQFGFAYTDLSTG
EMKVSQISSLDVLLNEMLSLQTKEVVVNHDVPSEVVQAFVQQQILVSYQD
EGADTAEVSFVSQNISQPLALAVIKQLVVYLATTQKRHLGHLQRAQAYEP
SQYLKLDHSAKMNLELTASLRTGHKSGTLLWLLDETKTAMGGRLLKQWLE
RPLLDLNQIKNRQNQVASFLQHYFERTNLQEALTKVYDLERLAGRVAFGS
VNGRDLIQLKTSLEQIPKIKDVLTGINETQAFDQALTRLDPVDDVRTLIE
TAINPDSPISVTDGGIIQDGYDEQLDQYRNAMSNGKQWLAQLEAQEREAT
GIHNLKIGFNRVFGYYIEVTRANLSSLPEGRYERKQTLTNAERFITPELK
EKEQLILEAEERSTALEYELFTQVREQVKLQIERLQTLAKGVAALDVLQS
FAVVSESYHYVQPTLRTDSREIDLVDGRHPVVEKVLGRQKYIPNAVQMGK
ETDMLLITGPNMSGKSTYMRQLALTVIMAQMGCFVPAKSANLPVFDQIFT
RIGAADDLISGQSTFMVEMMEANRAIMSATANSLILFDEIGRGTATYDGM
ALAQAIIEYIHDHVHAKTLFSTHYHELTALADTLTALRNVHVGAVEENGE
LVFLHKMLAGPADKSYGIHVAKLAGMPETLLQRADVILGQLEDKPKAPVQ
PATVAPAQPAAAAVEEQMALFEPEVAAPVDKKTDKVVAAIKNFDLMSATP
LEALNQLYEWQKQLNKH
>LSA0868 nfo, Endodeoxyribonuclease type IV
MLLGSHVSMKGKEMLLGSAQQAAEFGANTFMIYTGAPQNTRRKPIEELNI
PAAQALIAAKNLGPIVVHAPYIVNLGNTVKPENFKFAIEFLQQEVIRAEA
LGASQIVLHPGAHVGAGADAGIKQIIKGLNEILRPDQTAQIALETMAGKG
TEVGRRFEEIAQMIDGVTLNDKLSVTFDTCHTSDAGYNIREDFDGVLNEF
DHIIGLDRLKVIHLNDSKNPQGAHKDRHANIGFGEIGFDALHGVVTHPQL
VDVPKIMETPYVGKDKKHNFAPYAYEIAMLKKGEFDPDLLTKIEQNEGRL
>LSA1843 ogt, Methylated-DNA-protein-cysteineS-methyltransferase
MTTIYYDYLMQDDQKIIVAATDHGICFVGSPNQPLSELTTFMPNHDLLQD
PAKLAPVIDQITAYLTHARTTWDLPLDFLVGTPFQQQVWTVLQTIPYGQT
VTYNQLATQIGRPTAIRAVASAVGRNPLLMIVPCHRVIRKDGSLGGYRGG
LPFKKQLLALEQ
>LSA0975 parC, Topoisomerase IV, subunit A
MADEAQKIQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILY
AMAIDGNTYDKGFRKSAKSVGNVMGNFHPHGDSSIYEAMVRLSQDWKLRE
PLIEMHGNNGSMDGDPPAAMRYTEARLSKIASEMLKDIDKKTVDFVLNFD
DTAEEPTVLPARFPNLLVNGATGISAGYATEIPPHNLGEVTDGLVYLIDH
PDATLEKMMTFVKGPDFPTGGILQGLDGIKKAYETGRGRVVVRAKTSIQQ
LHGNREQIVISEIPYEVNKAQMVKKIDELRVLKKVDGISEVRDESDRMGL
SVVIELKKQADSQGILNYLFKNTDLQITYNFNMVAISDMQPKQVGLLEIL
HAYLKHQEEVVTRRTQYSLQKAQDRLHIVAGLVKALSILDQVISTIRASK
NKKDAKTNLVAQYDFTEAQAEAIVSLQLYRLTNTDVTALEAEAAELKTAV
AGYQAILGNPKELARVIKAELKSVVKAYRNDRKTEIEAEIETLEIDTSVT
VIDETVMVAVSHDGYLKRSSLRSYQASEGADGGLKEGDFAILQQPMQTLD
QLMLFTNYGHLIQRPVHEIADLKWKEMGEHISQSIGLAADEAIIAAFSFT
PNEQSGYFVIGTTDGYIKQTAFQDLLPSRTYRSKAQDFIKLHAGANVTNV
YWVSETDAQQQAIFSASYNGYGLSFALNEVSVSGAKAGGVKLMDLKDGDH
VANFTLFDPAEKHAAVAIITQRGAFKRMFLSEVGLTSRARRGVLILRELK
RDPHRVAAMVRVAPKIALLVKTEQALLTIDPQAHATGDRYSNGSFVMDVE
EVGQPVFVLAQSSEPISNHKD
>LSA0976 parE, Topoisomerase IV, subunit B
MPNQKQDYNDNSIQVLEGLEAVRKRPGMYIGSTDGRGLHHLVYEIVDNAV
DEALAGFGAEINVTIGADNSISVRDHGRGMPTGMHQSGIPTIEVILTVLH
AGGKFTQNSYKTSGGLHGVGASVVNALSEWLTVRVVRDGVAYEERFENGG
HPVGTLKKVGKANEPNGTLITFKPDASIFQVTTYNYNTLAERLRESAFLL
KDVKITLTDLRADPAKEDVFHYPEGIQSFVDYLNEDKDTIGNKLYFEGTK
EDIEVEFAGQYNDGYSENIMSFVNNVRTGDGGTHEAGMKAGLTKAFNDYA
RKVNLLKERDKNMEGSDVREGLSAVLSVRIPEELLQFEGQTKGKLGSPQA
RTAVDNLVYEQMSFFLLENGEFAQALVRKSLKAREAREAARKAREQSRNG
KKKKKSDGLLSGKLTPAQSKNAAKNELYLVEGDSAGGSAKQGRDRKFQAI
LPLRGKVLNTQKAKLQEILKNEEINTMIYTIGAGVGAEFKIEDSNYDKII
IMTDADTDGAHIQILLLTFFYRYMRPLIEAGKVYIALPPLYKLQKGAGGK
TKIAYAWTDDELKVVAKEMGKGYSQQRFKGLGEMNADQLWDTTMDPTSRT
LIRVRIDDAALAERRVTTLMGDKVEPRRKWIEENVKFTLAEEGSILETTG
QAATPVTEDNAVE
>LSA1552 pcrA, ATP-dependent DNA helicase
MSEQELLKGMNPEQAEAVLTTEGPLLIMAGAGSGKTRVLTHRVAYLIEEK
HVLPWRILAITFTNKAAREMRERVGNLLGEGAQDVWVSTFHALCVRILRR
EIEQIGYNRAFTIADPSEQLTLMRHVCRDLNIDTKKYEPKAILGTISKAK
NALQTPADYQGLANGPFEKMAAKCYTEYQKRLHQNQALDFDDLIMQTIRL
FRENKETLAHYQEKFQYIHVDEYQDTNEAQYTLVNMLAEKYQNLCVVGDA
DQSIYGWRGADISNIMNFEHDYPDAKSVMLEQNYRSTKTILEAANGVINR
NTFRKPKELWTQNEEGQPITYYRGQSERDESLFVITKIQEEMQKNHRKYG
DFAVLYRTNAQSRTIEEAFVKANMPYKMVGGHKFYDRKEIKDILAYLRLV
VNAADSMSFERIVNSPKRGIGPGTLEKLGQFADDHQWSLLEAAQNAELST
IPARSRNTLIDFGNVIGDLAKMREFLNVTDLTEQLLDKTGYKKALEVENT
LESQTRLENIEELLSVTKQFDEHYEPEEEDSDLFVDFLAELSLVSDLDSV
EEEASEVTMMTLHAAKGLEFPVVFLMGMEEGIFPLSRALLEEDELEEERR
LAYVGITRAESKLYLTNAYSRMLYGRQQSNQASRFVGEIDDQLLDYANGN
AGSIPERKLPFGKSNSYARATATTYNGPKTTTSHKIADTTGGDKSGSWQA
GQKVQHKKWGIGTVVKVNGTGSDQELDIAFKEQGVKRLLASFAPIEKVE
>LSA1406 polA, DNA-directed DNA polymerase I
MGSQKSLLLIDGNSVAFRAFYAMHQVLDSFTNQDGLHTNAIYAFKNMLDI
ILKRFEPTHVLVAFDAGKTTFRTAQFADYKGGRSKTPPELTEQFPYIKEL
LHAYGIQTAELANYEADDIIGTLASQAEQDGFVVNIVTGDRDLTQLTTDK
TTVNITVKGVNDTEAYTPEHVQEKLGLAPSQIVDLKGLMGDTSDNYPGVT
KVGEKTALKLLTEFGSIEGVYENVDAMKKSKMKEHLIEDRDQAFMSKKLA
TILRDAPIETTLADITYEGPNIDTLIAFYQEMNFQNFLKQLNVTPEAVEP
AENYQYTVLTLDNLETVQAIKTPVAFGVEMLTDNYHTADLIGFYIGAPDH
WYVSDDVALLAEPVLKDWLEDASHPKAVFGVKRTQVAANRLGVHLAGVDF
DLLLASYLLNTTNNSNDLGTVANLHEYQNVQTDEAVYGKGAKRAVPTEPA
LLYQHLVQKAAAIYHLQPQLEEQLKEHQQFDLFTDMELPLALVLAQMEIT
GIRVDASRLQQMGSEFSQTLKILEEKVYAEAGETFNINSPKQLGVILFEK
MGLPVVKKTKTGYSTAVDVLEQLRKDAPIVQTILDYRQIAKIQSTYVEGL
LKSIHQDNKVHTRYLQTLTQTGRLSSVDPNLQNIPVRLAEGRKIRQAFVP
SHPDWQMFASDYSQIELRVLAHISGDANMQEAFKEDRDIHANTAMKIFGL
NSADEVTPDMRRQAKATNFGIVYGISDYGLSQNIGISRQEAKRFIDAYFE
QYPGVQQFMVDIVKKAREEGYVETLFHRRRYLPDIHAKNFNLRSFAERTA
MNTPIQGSAADIIKVAMILMQQELKKANLQARMLLQVHDELIFEAPTEEI
PILQKLVPSVMDSAVKLAVPLKVESGFGPTWYDIKK
>LSA1256 polC, DNA-directed DNA polymerase III, polC-type
MALDQTALFQKLLEQIALPADVAHYPGFKTGQVEQVIVHETSKRWTFKLH
FDNVLPFAVYTAFEEHLEAAFQAIAAVSIEISTDAKELDGGVLAAYWEYV
VNHSGIQSSLLHELCAKETPYIEGRKVLLVVENDIVKTFFINQAQTTIQA
GYKRLGFPNFAIQPLIDESASQKSIEDFQAKRAVQDAERAQAAAEAIKKN
EALKEKRKTEGKPVDGPIVMGRGINPAEPVRQMISITEEERSIVIEGFIF
DKEVRVLRSGRQLLILKMTDYSSSFTVKKFSRDASDESLFAAIDKGMWFK
VRGSVQEDNFMRDLTVNANDLVEVSHPKREDTATDGKRIEMHLHTNMSQM
DATNPIGDYVKQAAKWGQPAIAVTDHYNLQAFPDAYAAGKKNGVKILYGV
EVNLVNDGTPVVYNLRDQVLESAEYVIFDVETTGLSAVYDSIIELAAVKM
RDGEVVASFDEFIDPERPLSAFTTQLTSITNEMVHGAKKEAEVLAMFKEF
TGDAVLAGHNVSFDMGFLNAGYERNDIDLIDNPVIDTLELSRMLHPEYKN
HKLDSLTKRYKINLEHHHRANADAESTGYLLYKLEKEAAENYDMVNVNQL
NDRVGVGEFYKQARPAHAVLMAQTQAGLKNLFKLVSASMTEYYYRTPRLP
KSKLDALREGILVGSACSNGEVFEAMMQKGYNEALDRAKYYDYIEVMPKA
VYAPLLERELVRDNRALEEIIRNLVKVGEKLNKPVVATGDAHYLNPEDAI
YRKILIHSMGGANPLNRSKLPDVHFRSTDEMLTAFDFLGPELAQELVVAN
PQKIADQIDEIVPVKDKLYTPKMAGAEDEIQTLTMNRAHELYGAELPEIV
EARLKKELKSIIGNGFSVIYLISQKLVYKSGKDGYLVGSRGSVGSSLVAT
MTGITEVNPLPPHYRCSNCHYSEFFTKGEVGSGYDLADKDCPECGTPLDK
DGHDIPFETFLGFHGDKVPDIDLNFSGDYQPVAHNYTKVLFGENNVFRAG
TIGTVADKTAYGYVKAYERDTEQTFRGAEVDRLAKGSTGVKRTTGQHPAG
IIVVPDYMDIYDFTPIQFPADDQDAAWKTTHFDFHSIHDNILKLDILGHD
DPTMIRMLQDLSGIDPKSIPTDDPGVMALFSGTDSLGVTPEQINSKMGTL
GVPEFGTRFVRGMLEETHPTTFSELLQISGLSHGTDVWLGNAEELINKGV
VTLKDVIGCRDNIMMDLIHWGMDDSMSFNIMERVRKGKGIPDDWQQAMRD
NENVPDWYIDSCLKIKYMFPKAHATAYILMALRIAYFKVYFPIIYYCAYF
SVRASDFDLVAMAQGKEGVKARMKEITDKGMEASTKEKNLLTVLEIANEC
LERGITIKMVDIEKSDSSDFLIQDDHTLLAPFRAVPSLGDNVAKQIVSAR
EEKPFLSKEDLSNRGKVSKTLIEYLTENNVLNDLPDENQLSLFDMM
>LSA0688 priA, Primosomal replication protein N (factor Y)
MPQIAKVIVDVPTMQTNRPYDYQVPVTLVDVIQPGMRVIIPFGNGDRKIQ
GFVLQVLDQLSFTGQLKAIEAVVDLTPAVNPELLSLSDWLAQQTYAFQIT
CLQTMLPSVMRAKYTKTATLTDEIPTDLQASLFNGNDELTFDQNLAPDKL
KQLMQLQRQGKISVTYHVDNRAQVKQLTAIEPALSFEQLEEARMGLRKSA
QKQSQLISYLQTLIDQEAPTLLKTILEKTTFTRENIRIGAEKGWLRQVKV
EAYRNPYANAVQPTHKMTLTSEQETAVDAVVQSASTDASEVFLIEGVTGS
GKTEVYLQTIDAVLQQGKTALMLVPEIALTPQMVQRVKGRFGDLVAVLHS
GLSEGEKYDEWRRIERKEARVVVGARSAVFAPLEDIGVIIMDEEHEASYK
QDESPRYHARDVAIWRSQYHNCPVILGSATPSLESRARAQKDVYHLIRLT
QRVNQQALPAVELVDMREAMRVQKASNFSPALLAGIKERMQKGEQSVLLL
NRRGFSSFIMCRDCGFVLQCPNCDISLTLHMDTHSMKCHYCGHEEAIPKI
CPSCQSRQIRYFGTGTQKVEAELQELIPEARILRMDVDTTRKKGAHAKLL
KKFGDHEADILLGTQMIAKGLDFPDVTLVGVINADTALGLPDFRASERTF
QLLTQVSGRAGRADKVGQVIVQSYNSENYAIQFAKQHDYEGFYQYEMAVR
HRGGYPPYYFTVKVTVSHPEEALAAKKSFQIAKQMRPILSDQALILGPTP
KSIARINNRYFYQIVIKYKQEPQLQAKLAEILETTQIDTRHGFKIGLDNE
PLQFT
>LSA0852 radC, DNA repair protein (RadC)
MLTSQSKLQPREQVALYGAASLSDEQLATVILRSGTQHLPVEVVAQRLLQ
RYPDFQDLEQADLVQLRQIEGIGPVKAIELQAICELSRRIQNQRTLRFGV
VASSQMVGQRMIESLAGETQEQLLAVYLDVKNQIIQIKQLYLGTLNSSVA
HPREVFKWAVQYSAAKFILVHNHPSGQLAPSTQDINFTKRIVNCGQLMGI
TCLDHLIIGSSQYLSLREEGYLVD
>LSA0487 recA, DNA recombinase A
MAKDERQAALDAALKKIEKNFGKGSIMRMGEKVDTQVSTVSSGSLALDEA
LGVGGYPRGRIVEIYGPESSGKTTVALHAVAEVQKQGGTAAYIDAENAMD
PKYATALGVNIDDLLLSQPDTGEQGLEIADALVSSGAVDILVVDSVAALV
PRAEIEGEMGDAHVGLQARLMSQALRKLSGTINKTKTIALFINQIREKVG
VMFGNPEVTPGGRALKFYSTVRLEVRRAETIKNGTDMIGNRARIKVVKNK
VAPPFKVAEVDIMYGQGISRTGELVDMAVEKDIINKSGSWYSYGSERIGQ
GRENAKNYLADHEDVEDEVRLKVRAAYGISDVPEEDLPTTEDEQINILPD
DSTEE
>LSA0805 recD, Exodeoxyribonuclease V, alpha subunit
MAILETENMVDNKPTVTGTVQSVFYENPGNFFKILLIKIAHKTIDWHEPE
IVVTGSFGEIKEDERYTFYGKVITHPKYGQQFQADNYQVDQPTTKTGLVA
YLSGEKFAGIGQKTAEKIVDTLGLDAIDKILADSTVLAPLGLNDKKQATL
VETLTINNGMEQIIIGLNNYGFGSSMAYNIYQTYHEDTLKIIQENPYQLV
ADIAGIGFKRADNLAEKIGFAADSPARIQGALMQALNELTNQAGDTFTQA
KPLLAASIQLMEQARNVAIDPNLVAEQLMVLAHDGKVVGDENRIYPNGLY
NAEWQIANHLMRIENERDKISYPKHDLDKEIRRLEKRFKMSYDDVQKNAI
KLAMTHRAFLLTGGPGTGKTTIINGIVTLFAELNGLSLDINEYKDTPFPI
LLAAPTGRAAKRMSETTGLPASTIHRLLGITGRENNPDIDSKELEGGLLI
VDEMSMVDTYLFRSLIRAVPSNMQVVFVGDKDQLPSVGAGQVFFDLLQSQ
AIPAIELQQIYRQDDESTIIPLAHEINQGQLPADLLQPQKDRSFIQCSPY
QIESVIKQVVTKAKDRGFETKDIQVLAPMYRGAAGIDQLNPMIQNIMNPK
VDDRKKQVSLGNVHYRIGDKILHLVNSPELNVFNGEIGQITGITYAKDSD
DKMDELTIAFDSTEITYKRTEWHKITLAYCTSIHKAQGSEFEMVILPLVN
QYQRMLKRNLLYTAVTRARSLLILIGEPSAFDKAAKELSANRQTTLKERI
ISVFNGEKVSQAVKTASVGLTEAKPTVEKLTPAKAAAPEQLALVDDADDS
EETIQEAPANYELTPALVSGHQIDPMIGMADLTPYTFMTSAK
>LSA0004 recF, DNA repair and recombination protein RecF (Recombinational DNA repair ATPase)
MYLSELQLNHYRNYESVDVHFSPDTNVLIGENAQGKTNLLEAIYVLALAR
SHRTNTDRELIQWHEDFAKITGLVQRSAGKTPLELVLSQKGKKAKVNHLE
QAKLSQYIGQLNVVLFAPEDLNIVKGSPAVRRHFIDMEFGQMSSKYLYNI
SQYKSILKQRNQYLKQLQRRQAKDLVYLGVLSDQLAAYGAEVTVARRQFL
QQMEKWAQKLHQEITKDREVLTFKYQSQIPEEQLDQSVEELYQQFQTLYE
KQQIREVEQGTTLIGPHRDDVQFLVNDKDVQAFGSQGQQRTTALSVKLAE
IDLMKAQTGEYPILLLDDVLSELDDLRQTHLLKTFQNKVQTFLTTTSLEN
VKKEIIATPRVFTVTNGVVIEEQAE
>LSA0699 recG, ATP-dependent DNA helicase, RecG
MLSLTDSVTVLTGVGPKRLTALNQLGIATISDLLYYFPFRYEDLKVKDLS
EAVDQEKVTLKGTVVADPVVSRWGPGKTRLNVRLLINHDVIMVTFFNQPY
LKDKFEAGVDIAVYGKWDARRNSLTGVKVLAVQSADNPSFAAIYSTNKNV
RQGTLVKLIREAFDNYQSVIPDLIPADIRERYKLVSEVELIAGMHFPESY
PEAKQARRTAIFHEFFLYQLQLQVIKQADRHVENGLALPYQNAALKEFIK
TLPFDLTDAQKRVVNEICLDLKAPAHMNRLLQGDVGSGKTIVAAIAMFAA
VTAGFQAALMVPTEILAEQHYQSLQKLYAPMNVTVGLLTGSTTAKERRTL
LADIESGRINIIVGTHALIQDAVVYHKLGFAVIDEQHRFGVNQRRVLREK
GLQPDMLAMTATPIPRTLAITAYGEMDVSTIDELPKGRIPIETSWVRSNQ
VEQALSFVQKQLADNSQVFAITPLIAESEQMDLKNAEEIYATLAERFEPQ
YHVALLHGKLKDDEKNRIMTAFSNNEIQLLVSTTVVEVGVDVPNATVMMI
FDADRFGLAQLHQLRGRVGRGKKKAYCLLIADPKNQQGVDRMTIMTETTN
GFVVAQKDLELRGPGEVFGDRQSGLPVFKVGDPVADFASLQVAQQEVQKI
FTVDPTFSQPAYAPLKAYLAQQKQNYQTLD
>LSA1277 recJ, Single-strand DNA-specific exonuclease RecJ
MEAQYEWQLKPVPTEDELQTITKDNPLPKAAAQLLWQRGLRDAEQINDFM
NPNVGQLHDPYALHDMQKAIDRIQEAIVNGEKITIYGDYDADGITSTTLM
KETLDDLGADVEVYVPNRFKDGYGPNLEAYKRLIENGTQLIVTVDNGVSG
LEPIAYAQEHGVDVVVTDHHELPSELPNAVAIVHPRHPEGQYPFGELCGV
GVAFKVATALLEEIPYDKLDLAAIGTVCDIVPLVDENRTLVSLGLQQLQN
TDRPGLVALCQSAGLEQATLDATNIGFGIGPRLNAIGRLGDATLGVQLLT
TLDDEEAVEQAQFIEQQNKKRQGLVQEITATAMTIAETPENQASATLVIA
HEGWHEGVLGIVASHVVEQTGKPTLVLTIDPETGLAKGSGRSVTAFHLFK
ALDAHRELLVHFGGHHMAVGLTAKVDQLALIQTAMNEYAQVNQLDLTGRQ
PLPVDLALTLADITPDLYQALQQLAPFGSDNPEPLIELSAPQLADVKQIG
ADQKHLKMMAVDQQQQLAVLAFNKGALMPDLTAAEDVKLVGSLSENTWRG
QTTLQLMVKDLATSGQVVLDQRSNRLTKQLFQSTGDYVFFNDKMREQLQS
YLPAGSQALLATDEQVATSQELIVVDEPADLTAFEQFYQQQQAAKLSLIF
YAKHSAYLEGMPTKQQFATFLVYLRKHPNIEKARLAELAVYLKLQLPLMI
FMLQVFFDLGFVRIERGLITAELQPEKHALESAPSYQKRLAKIEMEKQLV
YSTFTEVKDWLATLPAVANR
>LSA0682 recN, DNA repair and genetic recombination protein N
MLQELVIHDFAIIDQLAISFDEGMTVLSGETGAGKSIIIDAVGLLAGGRG
SQDFIRTGAKKATLEGLFTSPENATTAALLAEYGIEHDDQTILLQRDLAL
NGHNVCRVNGHLVNTATLKKIGETLVDIHGQNEHQELMYPDRHLGLLDEF
AHTALASAKAAYQETYQAYRQTEKALKKKQQNEQEWAQRLDMLKFQTNEI
DAAQLQPDEESKLIEERAKLSNFQRINQALQASRAILSGEEGNALDQIAI
AMNQMQEIAELDPEFKRIADNLQTGYYTLQDSGSDISREVDNLEWDEARL
DEIEQRLETINNLEHKYGDSIPEILAYGAQITKELQAMQATEANASELEQ
QFEQQQAQLLEEAAVLSEKRQATAQQLEKAVHQQLKALYMAKTVFKVEFA
MVDNQQFMRSGRDKVEFYIQPNPGEKLRPLAKTASGGELSRLMLALKTIF
SESQGVTSIIFDEVDTGVSGRVAQAIANKISEIAQHSQVLCITHLPQVAA
MSDHQYQIQKQIKQNRTETSIQKVTGKKRVAELARMLAGTEVTELTLEHA
QELVDLAETAKAQIRQA
>LSA0879 recO, DNA repair protein O
MAEHRFEDFNGLVMYRKNYKEKDMLVKILTDRFGKKMFYLRGANKPKFRL
SAAILPFTQAEYGGDIRDDGLSFLNNVKSATQFQTISQDLFLNAYATYIL
NLIDVGFPDSEPLGIWYDKVEQALNLIDEGFDAAMITHIIEIQLLQVFGV
QPQLQGCAVCGRTDLAFDYSESYGGLLCQRHWHLDPNRFHSSQRAIYYLR
LFSVIDLFKIQSVNVKEATQVELKMIIDRLYQDTVGLSLKSKQFIDKMYS
FDSQLPQLKKVPSEIDSTPKDD
>LSA1020 recQ1, ATP-dependent DNA helicase (RecQ)
MTSEQLIYDQLAQHFGYSTFKPGQLAVIKSVLAGQETLAVLPTGTGKSLC
YQLPAYILGHTTVIVSPLIALMQDQVAQLNYQGEKRAVAINSNLVPQQKY
QLLTHLADYRFIFMAPETISQPEVIQALQRCQIDLFVVDEAHCISQWGID
FRPDYLVLAAIKAQLQPTATLALTATANDRVRQDILNKLALKNAAQIMTS
VDRPNIYLGVSQQPDEQAKNQFLANLVKKSQGPGIVYFSSRQKTMAIATF
LQQETDLKIAYYHAALSTQERYLIQQQFMQGQLDLICTTNAFGMGINKAD
IRFVIHYHLPQNIESYLQEIGRAGRDGQAAYALVLTTPQDLYLQQSLVSF
GIPEPGLIRRYYQEPQLFKQSQGSEFELLRRYQQLGMTEEEVTALLDNRQ
TEKQFSLQTMLDYLTLKGCRRQFIVNYFDQAPKTIEHSETCCGEQDSTDF
LAQLDLEQAINYKTAETVVLTGWTGILDQLF
>LSA1846 recQ2, ATP-dependent DNA helicase (RecQ)
MQAQAVLKEKFGYDHFREGQADVIESLLAGTNVLAIMPTGGGKSLCYQIP
ALMLPGLTLVVSPLISLMKDQVDALNENGIPATFINSTLTQGEVQERFNQ
AARGEVKLLYVSPERLDSDYFLADLAELTIDLIAVDEAHCISQWGHDFRP
SYLRLTDTIKSMRQQPTIVALTATATSQVADDIMLRLGIQHEVKTGFSRE
NLAFQVVKNQNSDRYLIDYLKVNKQKSGIIYASTRKEVERLTKLIEKAKL
AVTMYHGGLNEMVRRQNQEDFLYDRKPIMVATNAFGMGIDKSNVRFVVHA
QIPGSLEAYYQEAGRAGRDGLPSEAILLFKVNDVQIQHFFIDQSEMDDEN
KQREYAKLQEMTQYANTQQCLQQYIVNYFDDDCEKCGRCSNCLDTRESQD
ITIDVQKVLSCIKRMDERFGKVMVAQVLTGSKNQKIMQFRFDELPTYGLM
RGDSQKEVSGLIDYLVASGYLRASGGQYPVLQITLAGVKVLKGQEKVSRK
MAAKVQKTLPEDNELFERLRELRRDLAEEQGVPPFVIFSDKTLYSMCEIM
PTSLTEMLDVKGVGENKLEKYGELFLDILVAE
>LSA0338 recR, Recombination DNA repair protein RecR
MQYPEPIAKLIESYMKLPGIGNKTATRLAFYTIDMNEDDVTNFAKNLISA
RRDLHYCSVCGNITDEDPCEICRDTARSQEMILVVEQPKDVMSMERMNDY
HGLYHVLHGVLSPIEGKGPDDINIANLIKRLQKTPAKEVIIATNATPEGE
ATAMYISRLIKPAGIKVTRLAHGLAVGSDIEYADEMTLLKAVEGRQEI
>LSA0911 rexAC, ATP-dependent exonuclease, subunit A (C terminal fragment), authentic frameshift
MKQWQKGQNSTHQILDDGVRNDAASLLDWIGLSLIRHPQAKDWITDYEPL
LALSGDQTEFKLIMTNEALLGEIPGSLHNDQDWGQQQQKALQTIDLNSGI
ATAIAEQLTFKYPANVATQTTAYQSVSEVKRLFEDPDNTGLGQLDLAAEQ
PRQANRYVTDSLAQPQFLQTVQQPTAAEVGTATHLVLQEIDLTQPVTLAS
LQGLVDRLVLQNSLSANVAAKINLNHLLTFFESDLGQQLLAHPEAVKREV
PFSLLLPAETIFEGIRPTDDDHVLIHGIMDGYLLTDDGCYLFDYKTDFID
PSDQEAAIERVKNRYAGQINLYSAALNQIAQKPVTHKYLYLLSIGELVEI
N
>LSA0910 rexAN, ATP-dependent exonuclease, subunit A (N terminal fragment), authentic frameshift
MAILSNPQFTPSQQAAVDHDGHDILVSASAGSGKTSVLVARVIQKILKGT
DVDTLLVVTFTEAAATEMRQRIQAALRDASEKATEPAVKQRLRQQLSLVP
TAQISTLHAFCLKVIKQFYYVIDRDPVFRLLSDTAERLLLADQVWQRVRE
AFYNHEYVKENEQDTLFYELAQNFSNDRNDDGLTDIVFELLDFANANSNP
VKWLNKLPKSYAVDEAGLTASDYFQEKILPILQQTITECLEALQEAEQLS
KTSENLMIYAPQIATTQAALTQINADAKTLNWQAWRQQLTDAQLGPAKRT
KKLEPDEQINKDRLKADLDDVKKKIQTLLDTYFVFDEATTANIQRQAGQL
VQKLVSVTLTFREAFQAEKERRHLLDFSDLEQLCLTILSVEDSPARAFYQ
QKFSEVLVDEYQDTNPLQETIIQKVTSDHPRNLFMVGDVKQSIYAFRLAD
PSLFKNKYNEFGVTEAERDSERIILAENFRSRRNIDDFTNLIFKQLMDEN
LGELDYDENAALQYGARYYPDQHPTAPTELLLYETKPEEAVANPQLDKSE
GQVVAVAKRIQAMMTNGEQIWDKKLEKMRPIEYRDIVLLAPTRGNNLFIL
DYFKRFGLPVVIKDAQNYFQTTEVQIMLALLQVIDNPNQDIPLVSVLRSP
IVGLNENELALIRINDKTDDYYQAVFNFIDQYNEQKVGHLGQQVMQKLTH
FMALLTSFRTIARQQPIVDLIWTIYQETGFLDYVGGMPAGRQRQANLHAL
YERATAYEENGFKGLFQFIQFIERLQKQDKDLAQPTSLENQDAISVMTIH
GSKGLEFPVVFLIDTSRRFNQQDLQRSYVLDNHGGLGVVYLDSQKRLKVP
TLPELAITAQKRKKLRAEEMLKTIRCFDTCGTMVNHRWPL
>LSA0909 rexB, ATP-dependent exonuclease, subunit B (ATP-dependent exonuclease, subunit B)
MSLKFILGTASYDHHQALVTNLKATFQEKPQERYFYLVPNHIKFESEVSI
LEALKSDENDYVAASQIQVFSLTRLAWYFMKNTPYYQIPRISTAGLNMLV
FRLLQEHQEQLQLFRGEVRHTGFVAQLTKQLLELKIGCITPADLTAMAEN
LGDQQVELAKKLHDLTIIATAFEAAMQKRFIENTALIDALTLFLQQQTLT
DCHFYVEGFAQFTAQEQALLTTLMQQSEVQIGFILDRAYPNQQPDGLNFF
FQAGRTYYNLYQQARLNHVPVMMDQMADSQRLTPALAALDQFWVSSESPG
NRKLSPVPVADHLHVVAAENRYAELRYVAREIRRLVQTGHYRYRDFLILT
RHLAPYQTMIAPILTEYEIPYFCDLPQTMAAHPLVSLLEKLLDVNLHFYR
YEDVMALLKTELLIPKGMSIAEFRADLDLCENLILKNGYEGKDWLNDFDW
QFYRFGSYQEGTRTTQDEALTERINGIRRYVQATLPPFYRALKAAKTGRQ
VVQVLYQFLIDHGVDRQLLHWRDQALAANQVAQAGQPEQTWSTFMQMLDE
YVTLLGDVSFEEDNTEQLNEFKQLLSAGFAAAQYAQIPSTLDQVVLSESG
MVQTKKRQITFMIGSTDQVMPDQIENTALLTDQDRQRLLDNEGQVTPLLN
ESSVGKMNAEPYLNYLAFLSSQTTVYFTYPLGNGEGTAFKISPYVERIRN
HFDLTIQKIAAEQSLQSTETPQGSWRSLLSDLIQVSRQAQENQTLIPEQW
LTTYRLLQQAPQSQFLTTQLFQSLNYRNEPERLTPEIVTGLYGNEIHTSI
SKLEEFYQNQYAYFLKYGLKLQERPVFELTPANTGNFYHEVMDRFIKLIQ
GQQIALPELDDQQIDKLVSEVLAKTYEQPEFKILNKTARMGYIRQQLMQT
VKRVSLALRNQSLSTNLRPLATEVLFGQVGAEKGLQGLNFMLDDHREVKV
RGKIDRIDQLTINNQPYLGIVDYKSSQHSFNFRDAYYGLALQMLTYLETV
LQDQQAILPANSAVKPAGAFYLHLKNPTLTLKQLTKKKMGQLQKGEFDQM
LLDQFKYNGLIVNDEELLENLDTTLVNGQSPLFAFSKLKSGKFSSKQLVT
LNQLDLLMAHNEDLIKEAGQAIFAGDTALNPIMRPDRTNALTLSPFKSIF
QFDAMLPENNYRQLEALDEKAVLERLMSKKGDGNLE
>LSA0993 rnhB, Ribonuclease HII (RNase HII)
MTKAQSIAEIKQLLQAPVTEEQLATFAADSRAGVQKLVVQYHKRAAKLAA
QKAAFEERRQTEKALWPDYPLVAGIDEVGRGPLAGPVVTAAVILPHDFDL
WQVNDSKQLSFKLKQELYREIMAQAVSVSIGIASPERIDTENIYHATELA
MGEAVAGLDKQPDYLLVDAMTVPTDIPQEKLIKGDARSISIASASIVAKV
IRDQLMINYDQQYPGYDLANNMGYGTAKHLAGLAELGVTPIHRRSFSPVQ
NAL
>LSA0391 rnhC, Ribonuclease HIII (RNase HIII)
MQAVIKMTPAQLKTIQQTYPSNRPLPPGAVFAHRGNGLNVTGYRSGKVLF
QGATAEAAAAKWGPLAPAKKSKATKGSAKGDTLPPDFANWSVIGSDEVGN
GSYFGPLTIAAVYVSQENLSFVRNLGVADSKTLTDAQIDQMAIKMMTKLP
YHIVNIMPQKYNQVHEQMNIEKMKAVSHNFALLKVLKKIQPDQPQGILID
QFEPRATYYRYLKDEPVVLRDNVYFTTKAEQFHLAVAAASIIARHQANLS
MIELSKLAGRDIPVGAHKSIDKIAADLLDQGGLEYLGQFAKLHFINTKKA
QALRS
>LSA0366 ruvA, Holliday junction DNA helicase RuvA
MYEYLKGLVTAVNPYYVVLEVQGIGYQLQVANPYRYTESMSEVVQIFVHQ
AVRDTDITLFGFYDLDEKQLFQKLISVSGIGPKSALAILANSDHSGLIQA
IMNDDIGYLTKFPGVGKKTAQQIALDLKGKLGDLEQSATLVGQTAIDLGS
QGDSPELSDALAALSALGYSAREVKAITPKLTDFAAQTTDQYLREGLRLL
MKK
>LSA0367 ruvB, Holliday junction DNA helicase RuvB
MADERIVSAENDDFAEASIEKTLRPQVLAQYIGQDRVKNELAVYIEAAKK
REESLDHVLLYGPPGLGKTTLAMVIANELQVQIRTTSGPAIERPGDLVAL
LNELQPGDVLFIDEIHRLPKMVEELLYSAMEDFYIDIVVGQGPTAHPVHF
PLPPFTLIGATTRAGLLSAPLRDRFGIVEHMAYYTEADLMDIVQRSAGVF
NMSIVPDGALEIARRSRGTPRIANRLLKRTRDYAQVADQNTIDQAIADHA
LSQLQVDIRGLDGVDRKILQMMIDYYQGGPVGLKTIAANIGEENETIEEV
YEPYLLQIGFLKRTQRGRMVTPAGYAHLGMPYPEK
>LSA0008 ssb, Single-stranded DNA binding protein (Ssb)
MINRVVLVGRLTRDVDLRYTSSGAAVGTFSMAVNRQFTNANGDREADFIN
CVIWRKSAENFANFTKKGSLVGVDGRLQTRNYENQQGQRVYVTEVVVDNF
SLLESRTTTEQRQGDGASQNFNSNQSNGSQQSGFTSPQQTGNAPAANNTQ
ADPFANNGQAIDISDDDLPF
>LSA0039 tag1, 3-methyl-adenine DNA glycosylase I
MASDNWMNATAELLTYYEQEWGQPEHDDQRLFELLCLETYQAVLSWQTVL
AKRAAFRTAFYQFEIQKVAQMTTTDIDRLLQNPAIIRNRRKLAATVNNAQ
VVLAIQQEQESFAHYLWAFVDGQPIVNRPKTWADVPAQSALSVAVSRDMK
RRGFQFVGPVTVYSYLQGAGLIDDHPQHLKG
>LSA1323 tag2, 3-methyl-adenine DNA glycosylase I
MVDETAKNDFKIATDGIQAYHLYFGTPTDDDQIWFELLTVGVFQVGLSWK
VAASKIPILRQQMAGMVIDRVAQFDEIDVERLQEAPDMIRNTRKIRATIQ
NARAIQKVQDEFGSFSAYLWAFVDNQPQLLDSQMAGVSDKSAPISARLAK
DLKKRGFKFVGPVVTHLFMLAGGLIQLIDED
>LSA0145 tnpA1-IS1520, Transposase (orfA) of IS1520 (IS3 family)
MAIKYSNEFKESIVSLSQTGRSANSLAKEYNVSVSTVTKWIKQADPNNTK
VLSSNERALIKENKRLKEELDILKRAAVLMAKS
>LSA0141 tnpA1-ISLsa1, Transposase of ISLsa1 (IS30 family)
MGTSTLSRFQRGALAQLVNEGNKSYQVMADALGVAKATISYELDRVKPYD
PELAQQDADRKRRNCGRRSMLTAALATLITNHLRLTWSPETIAAAYNLST
ASIYNWLNRGWLPFKLTDLPNRNVRQHRVSENRGKFTSGTSIEQRPTTVN
QRLAFGHWEVDTVLSSRSESRSCLVTFVERKTRLLWAIKAPNRTAKALNT
AFGKFMGAFGPQVKSITVDHGKEFANYQALEQDYQIKVYFCHPYSPWERG
SNEYFNRRLRWFFPKKTNFSQVTTDEILAALELINQRPLKIHHQQTAIER
FRACSD
>LSA0262 tnpA1-ISLsa2, Transposase (orfA) of ISLsa2 (IS150 family)
MNVLKWTKTNKASYPKTALHFNISNVGTIWQWQYILETEGADALYRSKGR
QIIMSADKQSKKRQQTELERLREENELLQIENEYLKKLRALVQEEEDNKH
KSSKS
>LSA0220_a tnpA2-IS1520, Transposase (orfA) of IS1520 (IS3 family)
MAIKYSNEFKESIVSLSQTGRSANSLAKEYNVSVSTVTKWIKQADPNNTK
VLSSNERALIKENKRLKEELDILKRAAVLMAKS
>LSA0216_a tnpA2-ISLsa1, Transposase of ISLsa1 (IS30 family)
MGTSTLSRFQRGALAQLVNEGNKSYQVMADALGVAKATISYELDRVKPYD
PELAQQDADRKRRNCGRRSMLTAALATLITNHLRLTWSPETIAAAYNLST
ASIYNWLNRGWLPFKLTDLPNRNVRQHRVSENRGKFTSGTSIEQRPTTVN
QRLAFGHWEVDTVLSSRSESRSCLVTFVERKTRLLWAIKAPNRTAKALNT
AFGKFMGAFGPQVKSITVDHGKEFANYQALEQDYQIKVYFCHPYSPWERG
SNEYFNRRLRWFFPKKTNFSQVTTDEILAALELINQRPLKIHHQQTAIER
FRACSD
>LSA0473 tnpA2-ISLsa2, Transposase (orfA) of ISLsa2 (IS150 family)
MNVLKWMKTNKASYPKTALHFNISNVGTIWQWQHIWETEGADALYRSKGR
QTIMTADKQSKKRQQTELERLREENELLQIENEYLKKLRALVQEEEDNKR
KSSKS
>LSA0256_c tnpA3-IS1520, Transposase (orfA) of IS1520 (IS3 family)
MAIKYSNEFKESIVSLSQTGRSANSLAKEYNVSVSTVTKWIKQADPNNTK
VLSSNERALIKENKRLKEELDILKRAAVLMAKS
>LSA1152_a tnpA3-ISLsa1, Transposase of ISLsa1 (IS30 family)
MGTSTLSRFQRGALAQLVNEGNKSYQVMADALGVAKATISYELDRVKPYD
PELAQQDADRKRRNCGRRSMLTAALATLITNHLRLTWSPETIAAAYNLST
ASIYNWLNRGWLPFKLTDLPNRNVRQHRVSENRGKFTSGTSIEQRPTTVN
QRLAFGHWEVDTVLSSRSESRSCLVTFVERKTRLLWAIKAPNRTAKALNT
AFGKFMGAFGPQVKSITVDHGKEFANYQALEQDYQIKVYFCHPYSPWERG
SNEYFNRRLRWFFPKKTNFSQVTTDEILAALELINQRPLKIHHQQTAIER
FRACSD
>LSA0904 tnpA3N-ISLsa2, Transposase (orfA) of ISLsa2 (N-terminal fragment), authentic frameshift
MNVLKWMKTNKASYPKTALHFNISNVGTIWQWQHIWETEGADALYRSKGR
>LSA1183_a tnpA4-IS1520, Transposase (orfA) of IS1520 (IS3 family)
MAIKYSNEFKESIVSLSQTGRSANSLAKEYNVSVSTVTKWIKQADPNNTK
VLSSNERALIKENKRLKEELDILKRAAVLMAKS
>LSA1286_a tnpA5-IS1520, Transposase (orfA) of IS1520 (IS3 family)
MAIKYSNEFKESIVSLSQTGRSANSLAKEYNVSVSTVTKWIKQADPNNTK
VLSSNERALIKENKRLKEELDILKRAAVLMAKS
>LSA1181 tnpB-ISLsa3, Transposase (orfB) of ISLsa3 (IS4 family)
MRISPHFSRSQKGKYRVQLAPTEAAFSRFLKKLLLHQHLLDEMFTELVTT
LYETLDGFGQTLALDGKIIPSYATKPNKKVEHDGRRDTEADFTLKQYTTT
TANGEKITKKKTWFGYRLHLIVDANYELSVAYEVTKASEGEPTVAKRLIK
QFSTSQTKQCDYLLADRGYDGAPLLSLIESKNIIPVIDIKNQWDKDTLTQ
QYRDTDLIYTYNGAVSYVDEKGNEIKLAYMGHDKKTDCLRYGFKSQYQDN
RLFRIKCEED
>LSA0144 tnpB1-IS1520, Transposase (orfB) of IS1520 (IS3 family)
MLEVVNANLLAGHRITRILSVLKIPRSTYYDYLHWQPSRTERRRHLIKQE
VLTAWLRYPMYGYPRLTILLNQQSDIHVSQRLVYQQMCELGIRSRMVKRI
NKPTTQTDYDQRPNLIKQLTDQSGILLTDITYIPLNHTWCYLASVYNPVT
RRVIAYQLNTQMTKELATNVITQVMAQAVKPQIIHSDMGSQYTSDLFENT
LSKYGIKHSYSRKGQPGDNARIESFHSILKREYVNFQDFKTIHEAIAGID
NYIRWYNSDRISLVA
>LSA0261 tnpB1-ISLsa2, Transposase (orfB) of ISLsa2 (IS150 family)
MAKSTYEYIISHEPNGSSDQSVKHAIQTIKKDHPAYGYRRVTGELHRMNI
LVNHKKVLVLMREMQLLSTAFNKRTRKYNSYKGNVGTVAKNLINRRFFTD
RPYQKLATDVTEVRWGAKTIDERAYFTCIYDLFSGEILSHQVSKHPTVEF
TTTVLNRAVKKIPKDLEYRTTIHSDQGFQYQHQNWTNILKEHRIFQSMSR
KATCLDNASMESFFHIMKAEAFYQKETDTYETLVSQISVWIDDYNFSRIK
TKLGCKSPVEYRIFTTQKAA
>LSA0220_b tnpB2-IS1520, Transposase (orfB) of IS1520 (IS3 family)
MLEVVNANLLAGHRITRILSVLKIPRSTYYDYLHWQPSRTERRRHLIKQE
VLTAWLRYPMYGYPRLTILLNQQSDIHVSQRLVYQQMCELGIRSRMVKRI
NKPTTQTDYDQRPNLIKQLTDQSGILLTDITYIPLNHTWCYLASVYNPVT
RRVIAYQLNTQMTKELATNVITQVMAQAVKPQIIHSDMGSQYTSDLFENT
LSKYGIKHSYSRKGQPGDNARIESFHSILKREYVNFQDFKTIHEAIAGID
NYIRWYNSDRISLVA
>LSA0474 tnpB2-ISLsa2, Transposase (orfB) of ISLsa2 (IS150 family)
MAKSTYEYIISHEPNGSSDQSVKQAIQTIKKNHPAYGYRRVTGELHRMNI
LVNHKKVLVLMRELQLLSTAFNKRTRKYNSYRGNVGTVAKNLIHRRFFTD
RPYQKLVTDVTEVRWGTKTIDERAYFTCIYDLFSGEILSHQVSRHPTVEF
TTTVLNRAVKKIPKNLKYRTTVHSDQGFQYQHQDWTNILKEHRIFQSMSR
KATCLDNASMESFFHIMKAEAFYQKETDTYETLVSQISVWIDDYNFSRIK
TKLGCKSPVEYRIFTTQKAA
>LSA0256_b tnpB3-IS1520, Transposase (orfB) of IS1520 (IS3 family)
MLEVVNANLLAGHRITRILSVLKIPRSTYYDYLHWQPSRTERRRHLIKQE
VLTAWLRYPMYGYPRLTILLNQQSDIHVSQRLVYQQMCELGIRSRMVKRI
NKPTTQTDYDQRPNLIKQLTDQSGILLTDITYIPLNHTWCYLASVYNPVT
RRVIAYQLNTQMTKELATNVITQVMAQAVKPQIIHSDMGSQYTSDLFENT
LSKYGIKHSYSRKGQPGDNARIESFHSILKREYVNFQDFKTIHEAIAGID
NYIRWYNSDRISLVA
>LSA0903_a tnpB3-ISLsa2, Transposase (orfB) of ISLsa2 (IS150 family)
MAKSTYEYIISHEPNGSSDQSVKQAIQTIKKNHPAYGYRRVTGELHRMNI
LVNHKKVLVLMRELQLLSTAFNKRTRKYNSYRGNVGTVAKNLIHRRFFTD
RPYQKLVTDVTEVRWGTKTIDERAYFTCIYDLFSGEILSHQVSRHPTVEF
TTTVLNRAVKKIPKNLKYRTTVHSDQGFQYQHQDWTNILKEHRIFQSMSR
KATCLDNASMESFFHIMKAEAFYQKETDTYETLVSQISVWIDDYNFSRIK
TKLGCKSPVEYRIFTTQKAA
>LSA1183_b tnpB4-IS1520, Transposase (orfB) of IS1520 (IS3 family)
MLEVVNANLLAGHRITRILSVLKIPRSTYYDYLHWQPSRTERRRHLIKQE
VLTAWLRYPMYGYPRLTILLNQQSDIHVSQRLVYQQMCELGIRSRMVKRI
NKPTTQTDYDQRPNLIKQLTDQSGILLTDITYIPLNHTWCYLASVYNPVT
RRVIAYQLNTQMTKELATNVITQVMAQAVKPQIIHSDMGSQYTSDLFENT
LSKYGIKHSYSRKGQPGDNARIESFHSILKREYVNFQDFKTIHEAIAGID
NYIRWYNSDRISLVA
>LSA1286_b tnpB5-IS1520, Transposase (orfB) of IS1520 (IS3 family)
MLEVVNANLLAGHRITRILSVLKIPRSTYYDYLHWQPSRTERRRHLIKQE
VLTAWLRYPMYGYPRLTILLNQQSDIHVSQRLVYQQMCELGIRSRMVKRI
NKPTTQTDYDQRPNLIKQLTDQSGILLTDITYIPLNHTWCYLASVYNPVT
RRVIAYQLNTQMTKELATNVITQVMAQAVKPQIIHSDMGSQYTSDLFENT
LSKYGIKHSYSRKGQPGDNARIESFHSILKREYVNFQDFKTIHEAIAGID
NYIRWYNSDRISLVA
>LSA0989 topA, DNA topoisomerase I
MAGKNLVIVESPAKAKTIEKYLGRNYKVVASKGHIRDLPKSQMGVDFENN
YEPKYISIRGKGETIKELKKHAKKADHIYLAADPDREGEAIAWHVSHILK
LDPTDKNRVVFNEITKDTVKSAFKNPRSIDMKLVDAQQARRVLDRIVGYS
ISPLLWQKVKKGLSAGRVQSVALKLVIDREQEIKAFKPEEYWSLDAEFKK
GRSKFKASFYGLNGKKTALGNNDAVQDVLKQIDKTQPFTIEDVKKRERKR
FAAAPFTTSSLQQEANRKLNFRTRKTMMQAQQLYEGINLGGKEGTVGLIT
YMRTDSTRISTGAKHEASQFIHDNYGEEYAAVKAHKTKNPEGAQDAHEAI
RPTSVMRTPKSLKDVLTNDQYKIYNLIWSRFVASQMTPAVFDTVAVKINQ
NNVLFKANGSQMRFPGFTKLYVSSRDTEDSAKDNLLPELAVGDEVKLAKT
DPAQHFTQPPARYSEANLVKALEENGVGRPSTYSPTIETIQRRYYVKLNA
KRFEPTELGEIVNNLIVEFFPDIVSIDFTADLEHRLDEVETGQENWIKII
DNFYQPFEKEVEKASVQIEKVQIKDEPAGFDCDICGAPMVVKMGRYGKFF
ACSRFPDCRNTKAIVKEIGVTCPKCGKGQVIERKSKKNRLFYGCDRYPDC
DFVTWDKPVGRNCPKCEHYLVEKKIKGGKQVICPNGDYEEAVQK
>LSA0761 topB, DNA topoisomerase III
MRKKLVITEKPSVAKELAKVLGTNQKTKTYFEGDQYVITWAFGHLLSLQL
PEDIKKEWQQWRLEDLPIIPKHIGLKPLPKTGGQLKAISHLAHRQDISGA
VIATDSGREGEAVARYILEWIKFDKPVERLWISSQTTKAIKDGFANLKPA
KQFDNLYASALARGHADWLIGLNVTRALTTKYEDNLSAGRVQTPTLAFVN
ETAQQISRFKPEKYYTIQLKVGQEQATLQMAKPQGLKDRAQAETLVAKLK
QAQGKVGSVKTSQKSQAAPLPYDLTELQQVANAMYGLSAKKTLSLIQSLY
EIHKVVSYPRTDSKYLSTDIEGTLKERLSALVKFDPRAKQYLGQGAKVKQ
PAVFNDRKVTDHYALIPTEEPVRAEKLSTDELRMYRLIVERFMGLFADQY
VTAVTKATVQFGDHTFTFKQTKVVQQGWHADSKETPTTSVDWQEGAVVPA
DFSIKEQLTSAPKPLTEGTLLGKMEHYGLGTPATRAEIIEKLVRSELLER
RGHSLAVTPKGQQLLKLVNKTLVSPELTGKWENSLEAIARGQENQKAFIT
EIEAATKTLVSEIKKSETEYHDFAITNKKCPECDHPLKERNTRDGKVYVC
TNCHYRRRKDPKVSNHRCPQCHKKMVIIEGQAGAYFRCLNDGTTEKMLDK
KDCKKKISKHEERRLIQKVNQEEEPAESPLAAALRKAMEK
>LSA1344 ung, Uracil-DNA glycosylase
MKTIIHNDWQTVLEPEFAKPYYGQLHQFLKQEYATTTVYPEMHHIFQAFE
WTPFEQVKVVILGQDPYHGPHQAHGCSFSVLPGVKVPPSLKNIYKELQTD
VGFNPVNHGYLKAWADQGVFLLNTVLTVRAGEANSHRQQGWEQLTDAAIA
ALSQRGHVVFILWGNSAKAKRALIDESQNAVLTAVHPSPLAAYHGFFGSK
PFSQTNQQLKQWAMTPINWQLPQDVSEQK
>LSA0524 uvrA1, Excinuclease ABC, subunit A
MANDKIVIHGARAHNLKDIDVTIPRDKLVVITGLSGSGKSSLAFDTLYAE
GQRRYVESLSAYARQFLGQMDKPDVDSIDGLSPAISIDQKTTSKNPRSTV
GTVTEINDYLRLLWARVGQPICPNDGTEISSQSVEQMVDRVLALPERTKL
QIMSPIVRGKKGQHKKIFEKIQREGYVRVQVDGEVMDVSTDLELDKNKKH
DINIVVDRIVVKDGVRSRLFDSFEAALRLSDGYATADVIDGEQLLFSEHY
ACPICGFTVGALEPRLFSFNAPFGACPECDGLGLKLEVDTDLVVPDTSKT
LREGAIAPWNPISSQYYPQMLEQACTAFKIDMDRPFSKLTPRQKDIILNG
SQGKEFHFHYENDFGGVRDVEVPFEGVLSNIDRRYRETNSDFTRTQMRTY
MTELTCQTCHGKRLNRQALAVKVGGQDIAEVSDNAIKDGLPFFDNLELSE
KDQVIAKPILKEVHDRLTFLINVGLDYLTLSRSAGTLSGGEAQRIRLATQ
IGSNLSGVLYILDEPSIGLHQRDNDRLIGSLKKMRDLGNTLIVVEHDEDT
MRAADYLIDIGPGAGDLGGEVMAAGTPTEVEQNPNSLTGRYLAGQDYIPV
PLKRRQGNGKKVRVTGAAENNLKDLTVDFPLGEFVAVTGVSGSGKSTLVN
TILKKALAQKINRNSAKPGQYKTITGYQNLEKLINIDQSPIGRTPRSNPA
TYTGVFDNVRDLFAQTNEAKLRGYKKGRFSFNVKGGRCEACKGDGIIKIE
MNFLPDVYVPCEICHGSRYNSETLEVVYKGKNIAEILDMTVSEATEFFEN
IPKIARKLQTIVDVGLGYVTLGQSATTLSGGEAQRMKLASELQKQSTGKN
LYILDEPTTGLHTDDIKRLLGVLERLVDEGNTVLVIEHNLDMIKTADHII
DLGPEGGDKGGTIVATGTPETLVNVAESYTGRYLKPILERDTARTLAAQE
>LSA1051 uvrA2, Excinuclease ABC, ATP binding subunit
MTVKQPTQIEVRGGNVNNLKNINVDIPLNQFVAISGPSGSGKSSLAMGIL
YAEGSRRYLEALSTYTRRRITQNKRSQVQEVRHIPSAIALRQRPSVPSER
STVGSMSEIFNVVRLIFSRLGTTRCPNGHKIQPSLQIAQAMDLAGDKMGV
ITCPTCQVEFMAKSAEDFAFNSAGACPECHGTGQIQTLDDRKIIADENLS
IEDGAIASWRLPGRNFMPTVAAHIGVRIDVPYKNLTAKEKEIVLHGKRNK
YAVDFHTSTGRVFSTENTLYENAYDAVYESLKSVKSDRAMAKVNSFFHFS
TCPTCHGTRLNPELLTQTVGGQNIAAVSDMTLGALDTWVTATKADLPDEM
QQMATILFKNLLETLQPLLSLGLDYLTLSRNGNTLSTGELQRIQLARTLR
TATTGVLYVLDEPSIGLHPDNVEGLIHIFRQLVAQGNSLVVVDHEVNIIS
QADWVIEIGPAAGRKGGQVIAQGKPADLVQDPQSLIGPYIAGRPNILYPK
VATQATGVRTTMTVGQYFNLRDVTIEIPDNQITAVSGFSGAGKTSLILDS
LVPAIEAHHKHEQLPQQVTQLTTDLTSVVSIDAKPVGKNTRSTLATYTNI
MTNLRKLFAGLPESQAHNYGIAHFSYNNKEGACPNCGGLGSIILDIQYLP
DMEEVCPECQGKRYKPAIEVIKWHGDSIVDLLALSVEEAIPVFADVPNIL
KELKILKEIGLGYLHLGESTPSLSGGEAQRLKLVTHLNKKRAGTLFVFDE
PSVGLHPRDVETLMGVINQLKAKGATVIMITHDLDLMTNADYLIDLGPKG
GSQGGQVMASGTPSELVASQTESLTLSYLRAHFKKFQLNSH
>LSA0523 uvrB, Excinuclease ABC, subunit B
MIDRQNDNLFDLVAPYEPAGDQPAAIETLTKNFEAGAKAQVLMGATGTGK
TFTMSNVIKNLNKPTLIISHNKTLAGQLYAEFKQFFPNNAVEYFVSYYDY
YQPEAYVPSSDTYIEKDSSINDEIDKLRHSATSSLLERNDVIVVASVSCI
FGLGDPREYQNHVLSLRPGMEVERNDLLRQLVDIQFERNDIDFQRGRFRV
RGDVVEIFPASRDDHALRVEFFGDEIDRIVEVDALTGEVIGERSHVAIFP
ATHFMTNDEKMEKAIESIKAELAERLAVLKGEGKLLEAQRLEQRTNYDLE
MMQEMGYCSGIENYSRHMEDRQAGEPPYTLLDFFPKDSIMMIDESHVTMP
QIRGMYNGDRARKQMLIDYGFRLPSALDNRPLTLPEFEEHVNEIMYVSAT
PGPYEAEQTDIQVDQIIRPTGLLDPNIEVRPIMGQIDDLVGEINDRIEKN
ERVFITTLTKKMSEDLTDYLKELGIKVRYLHSDIKTLERTEIIRDLRLGK
FDVLIGINLLREGIDVPEVSLVAILDADKEGFLRSERSLIQTIGRASRNE
HGQVLLYADKITDSMRHAIDETKRRRTIQEDYNTAHNITPKTIIKPIRDA
ISMVQSVEHPEEIKMTNEIDLENMSKAEKLEMVERLSEQMRLAAKKLDFE
QAATLRDTILELKSEID
>LSA1055 uvrC, Excinuclease ABC, subunit C
MASEHIEHKLALLPALPGCYLMKDINAQIIYVGKAKNLKNRVRSYFKSSH
EGKTAKLVSEIVDFETIITSTNKEAFLLEITLIQKHQPYFNIKLKRGTGY
PYIKITNERDPRLLITGDVKKDGSYYFGPYPDVYAAQETLRFLQRVYPLR
RCQGHQGRPCLYYHMGQCLGACFQEVPEAAYTEQIKKIKRFLNGQVDNVK
KDLTEKMATAAQEMQFERAAELRDQLRYIEATVEKQKIISNDHTPRDLFA
FYMDKGWLSIQIFFIRQARLIRREKRLFPCVNTPEEELATFILQWYNRKN
NVLPREILVPDGIEKQVLSDILQVPIRTPQRGEKKALMEMAQKNSRLVLE
EKFRLLELDNRKTVGAQDEIMDALGLPHGHVIEAFDHSHIQGTDPVSAMV
TFVDGRAEKKLYRKYKLTQTAERAGANEDANTREVIYRRYSRLLKEGKAL
PDLILMDGGVVELNAAKDVLENELGLTIPVAGMVKDNHHKTASLLFGEAD
QTIQLDPKSQGFYLLTRIQDEVHRFAISFHRQLRGKNSLSSKLDDIKGVG
PKTRTKLLKNFGSMKHIKDASVEELEALGISKTVAQTIKLSL
>LSA0967 xerC1, Site-specific DNA-tyrosine recombinase, XerC
MDQQRYLELCEQRLADLPDYVRKFYINRQANAYSSATLYQYLQEYVRFFS
WLIDEQIVTVQTTKDIPLVALDKMKLEDIELYKIFLMNKRKVNNHKLSFQ
AVNRSINALNALWYFLTIEAEQADGEPYFYRNVMKKVKLLKSSETMATRS
RHIGQKLLTGDKKHDFITFMQVDYPSALSNRQLASYKQNCERDIAICVLA
LTTGIRLSELAQANVSDLNLEQLTITVIRKGGQQDTVPIAPWGLPYLQDY
VQIRQQRYLAANERALFVTKYRGQAKRISNYAIEKLVAKYSEAFGVRLTP
HKFRHTLATDLMSATHSETIVATQLGQTTTQATHLYTHVVDDEQRSAMDK
LE
>LSA0986 xerC2, Site-specific DNA-tyrosine recombinase, XerC
MALEQDWINLFLQYLIVDRHYSPETQKAYQADIKAFVDFLAANGGLTSFK
QVGTLEVQTYLNEMDQKKYSGETIARRISSLRSFYRYLIRNEFLQTDPFE
TVQLKKQRHKLPRFFYEKEMDALFAAIVGQEPLTQRNRAILELLYATGMR
VSECAQLTIGQIDFGLRVILVHGKGNKDRYVPFGNHATKALQDYLNDGRV
QLMAKRQQEHDVVFVNHLGNPITSRGIEYALDQVDKKTCLTSGIHPHMIR
HTFATHLLDHGADLRTVQELLGHSSLSTTQIYTHVTTAHLQKDYRQFFPR
AKN
>LSA0677 xseA, Exodeoxyribonuclease VII, large subunit
MVKPTDYLTVTALTQYLKAKFERDPYLDRVYLTGEISNFRLRPNAHQYFS
LKDNKAKISAIMFKSAFEKVKFTPEEGMKVLIVGRISLYEASGNYQIYVE
RMEPDGLGALYQAYEQLKAKLATEGLFDAPKQPLVRFPKRIAVITSPSGA
VIRDIITTTQRRYPIAQLVLFPAVVQGDGAADVLVERLKQVNEHGDFDTI
IIGRGGGSIEDLWPFNEERVARAIVASQIPVISSVGHETDTTIADLVADV
RAATPTAAAELATPVLTDEILKLQQQRLRLYQAFSKTVALNKKQLDHLQN
SYVLKQPKRLYDGYLQNVDQLQRRLLTAQQQLLKDRRQQVQLLQQRLMAQ
SPLMAVRQAQKDVTEQQRRLNQAMNRLMADRRQKAAQVIAALDLVSPLKI
LGRGFAYVTDDQQQMLKKVADFKTQQPIELHVQDGLVTAEVVATHKGEE
>LSA0678 xseB, Exodeoxyribonuclease VII, small subunit
MAEKKLTFEENLAQLEVIVNELETGDVPLEKAMTAFQEGVKLSQTLEETL
SQAEKTMAKVMADNGEEVPLDAEEQQ