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COG category: Replication, recombination and repair
Organism: Lactobacillus sakei subsp. sakei 23K, 23K

Number of genes found: 121

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Lactobacillus sakei subsp. sakei 23K, 23K
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
NA LSA0147 Putative DNA-repair helicaseSubName: Full=Putative DNA-repair helicase; chromosome CDS142108 1755 + 0.346439
NA LSA0944 Putative ribonuclease HSubName: Full=Putative ribonuclease H; chromosome CDS932116 384 - 0.421875
NA LSA0586 Site-specific recombinase, prophage lsa1 integraseSubName: Full=Site-specific recombinase, prophage lsa1 integrase; chromosome CDS595887 1158 - 0.385147
NA LSA1160 Hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1147580 252 - 0.34127
NA LSA0273 Putative DNA helicase (C-terminal fragment), authentic frameshitSubName: Full=Putative DNA helicase (C-terminal), authentic frameshit; chromosome CDS267432 1092 - 0.450549
NA LSA1097 Putative ADP-ribose phosphorylase, NUDIX familySubName: Full=Putative ADP-ribose phosphorylase, NUDIX family; EC=3.6.1.13; chromosome CDS1092343 501 - 0.44511
NA LSA0916 Putative DNA repair protein, endonuclease IIIRecName: Full=Endonuclease III; EC=4.2.99.18; AltName: Full=DNA-(apurinic or apyrimidinic site) lyase; chromosome CDS906987 651 + 0.465438
NA LSA1657 Putative deoxyribonuclease, TatD familySubName: Full=Putative deoxyribonuclease, TatD family; chromosome CDS1640330 777 - 0.444015
NA LSA0148 Putative DNA-repair ATPaseSubName: Full=Putative DNA-repair ATPase; chromosome CDS144009 2043 + 0.323054
NA LSA0774 Putative ADP-ribose pyrophosphatase, NUDIX familySubName: Full=Putative ADP-ribose pyrophosphatase, NUDIX family; EC=3.6.1.13; chromosome CDS770814 543 + 0.418048
NA LSA0623 Putative metallo-phosphoesteraseSubName: Full=Putative metallo-phosphoesterase; chromosome CDS624948 1194 + 0.422111
NA LSA0924 Putative site-specific recombinase, phage integrase familySubName: Full=Putative site-specific recombinase, phage integrase family; chromosome CDS915240 585 + 0.381197
NA LSA0992 Putative DNA processing protein, DprA/SMF familySubName: Full=Putative DNA processing protein, DprA/SMF family; chromosome CDS985501 867 - 0.438293
NA LSA0492 Putative bacterial type II secretion/competence system, ATP-dependent DNA helicase ComFA-likeSubName: Full=Putative bacterial type II secretion/competence system, ATP-dependent DNA helicase ComFA-like; chromosome CDS509945 1338 + 0.472347
NA LSA0146 Putative adenine-specifique DNA methyltransferaseSubName: Full=Putative adenine-specifique DNA methyltransferase; chromosome CDS140791 786 + 0.330789
NA LSA1476 Putative A/G-specific adenine glycosylaseSubName: Full=Putative A/G-specific adenine glycosylase; chromosome CDS1452837 1104 - 0.451087
NA LSA1854 DNA alkylation repair enzymeSubName: Full=DNA alkylation repair enzyme; chromosome CDS1841989 642 - 0.454829
NA LSA1593 Putative nucleotide diphosphate hydrolase, NUDIX familySubName: Full=Putative nucleotide diphosphate hydrolase, NUDIX family; EC=3.6.1.13; chromosome CDS1571243 585 + 0.391453
NA LSA1720_a Hypothetical protein (C-terminal fragment), authentic frameshiftSubName: Full=Uncharacterized protein; chromosome CDS1702456 2370 - 0.290295
NA LSA0393 DNA mismatch repair protein, MutS familyRecName: Full=Endonuclease MutS2; EC=3.1.-.-; chromosome CDS400730 2364 + 0.428088
NA LSA1615 Putative ATP-dependent RNA helicaseSubName: Full=Putative ATP-dependent RNA helicase; chromosome CDS1600484 1593 - 0.417451
NA LSA1266 Putative endonucleaseRecName: Full=UPF0213 protein LCA_1266; chromosome CDS1249137 276 - 0.438406
NA LSA1071 Putative bacterial type II secretion/competence system, protein ComEA-likeSubName: Full=Putative bacterial type II secretion/competence system, protein ComEA-like; chromosome CDS1066659 705 - 0.443972
NA LSA0912 Putative ATP-dependent helicase, DinG familySubName: Full=Putative ATP-dependent helicase, DinG family; chromosome CDS901422 2835 + 0.432451
NA LSA1661 Putative nucleotide hydrolase, NUDIX familySubName: Full=Putative nucleotide hydrolase, NUDIX family; chromosome CDS1644816 495 - 0.440404
NA LSA0389 Hypothetical proteinRecName: Full=Putative Holliday junction resolvase; EC=3.1.-.-; chromosome CDS397932 444 + 0.43018
NA LSA1162 DNA-repair protein (SOS response UmuC-like protein)SubName: Full=DNA-repair protein (SOS response UmuC-like protein); chromosome CDS1148425 1305 - 0.419157
NA LSA1074 Putative adenine-specific DNA methyltransferaseSubName: Full=Putative adenine-specific DNA methyltransferase; chromosome CDS1068996 555 - 0.418018
NA LSA0385 Putative ATP-dependent DNA/RNA helicaseSubName: Full=Putative ATP-dependent DNA/RNA helicase; chromosome CDS392226 1356 + 0.402655
NA LSA0143 Putative adenine-specific DNA methyltransferaseSubName: Full=Putative adenine-specific DNA methyltransferase; EC=2.1.1.72; chromosome CDS138418 864 - 0.355324
NA LSA0809 Putative DNA alkylation repair enzymeSubName: Full=Putative DNA alkylation repair enzyme; chromosome CDS802383 1101 + 0.448683
NA LSA0543 Putative 3-methy-adenine DNA glycosylase IRecName: Full=Putative 3-methyladenine DNA glycosylase; EC=3.2.2.-; chromosome CDS564907 642 - 0.492212
NA LSA1656 Hypothetical primase-related proteinRecName: Full=Ribonuclease M5; EC=3.1.26.8; AltName: Full=RNase M5; AltName: Full=Ribosomal RNA terminal maturase M5; chromosome CDS1639764 570 - 0.422807
NA LSA0076 Putative DNA invertase (Plasmidic Resolvase)SubName: Full=Putative DNA invertase (Plasmidic Resolvase); chromosome CDS71444 555 + 0.416216
NA LSA1299 Putative adenine-specific DNA methyltransferaseSubName: Full=Putative adenine-specific DNA methyltransferase; chromosome CDS1276109 1011 - 0.379822
NA LSA1534 Putative ATP-dependent RNA helicaseSubName: Full=Putative ATP-dependent RNA helicase; chromosome CDS1505389 1347 - 0.442465
NA LSA0921 Putative adenine-specific DNA methyltransferaseSubName: Full=Putative adenine-specific DNA methyltransferase; chromosome CDS912242 1152 + 0.418403
NA LSA0839 Putative DNA-replication helicaseSubName: Full=Putative DNA-replication helicase; chromosome CDS824558 1281 - 0.472287
XerD LSA1028 Site-specific DNA tyrosine recombinase, XerDRecName: Full=Tyrosine recombinase XerD; chromosome CDS1016756 885 - 0.432768
dinP LSA0382 DNA-damage-inducible protein PRecName: Full=DNA polymerase IV; Short=Pol IV; EC=2.7.7.7; chromosome CDS388652 1131 + 0.444739
dnaA LSA0001 Chromosomal replication initiation protein ARecName: Full=Chromosomal replication initiator protein DnaA; chromosome CDS210 1347 + 0.427617
dnaB LSA1402 Chromosome replication initiation/membrane attachment protein BSubName: Full=Chromosome replication initiation/membrane attachment protein B; chromosome CDS1368080 1380 - 0.407971
dnaC LSA0012 Replicative DNA helicase CSubName: Full=Replicative DNA helicase C; EC=3.6.1.-; chromosome CDS13323 1395 + 0.445161
dnaD LSA0915 DNA replication protein DnaD (Primosomal protein DnaD)SubName: Full=DNA replication protein DnaD (Primosomal protein DnaD); chromosome CDS906340 624 + 0.403846
dnaE LSA1034 DNA-directed DNA polymerase III, alpha subunitSubName: Full=DNA-directed DNA polymerase III, alpha subunit; EC=2.7.7.7; chromosome CDS1022722 3333 - 0.446445
dnaG LSA0883 DNA primase GRecName: Full=DNA primase; EC=2.7.7.-; chromosome CDS869440 1884 + 0.441083
dnaI LSA1401 Primosomal protein DnaI (Helicase loader)SubName: Full=Primosomal protein DnaI (Helicase loader); chromosome CDS1367154 927 - 0.434736
dnaN LSA0002 DNA-directed DNA polymerase III, beta subunitRecName: Full=DNA polymerase III subunit beta; EC=2.7.7.7; chromosome CDS1734 1140 + 0.414912
dnaQ LSA1339 DNA-directed DNA polymerase III, epsilon subunitSubName: Full=DNA-directed DNA polymerase III, epsilon subunit; chromosome CDS1310669 537 + 0.417132
dnaX LSA0336 DNA-directed DNA polymerase III, gamma/tau subunitSubName: Full=DNA-directed DNA polymerase III, gamma/tau subunit; EC=2.7.7.7; chromosome CDS340242 1716 + 0.435897
exoA LSA1338 Exodeoxyribonuclease IIISubName: Full=Exodeoxyribonuclease III; chromosome CDS1309869 765 + 0.39085
fpg LSA1405 Formamidopyrimidine-DNA glycosylaseRecName: Full=Formamidopyrimidine-DNA glycosylase; Short=Fapy-DNA glycosylase; EC=3.2.2.23; AltName: Full=DNA-(apurinic or apyrimidinic site) lyase MutM; Short=AP lyase MutM; EC=4.2.99.18; chromosome CDS1371107 837 - 0.458781
gyrA LSA0006 DNA gyrase, A subunitRecName: Full=DNA gyrase subunit A; EC=5.99.1.3; chromosome CDS6538 2574 + 0.445221
gyrB LSA0005 DNA gyrase, B subunitRecName: Full=DNA gyrase subunit B; EC=5.99.1.3; chromosome CDS4514 1977 + 0.438037
hbsU LSA1015 Histone-like DNA-binding protein HUSubName: Full=Histone-like DNA-binding protein HU; chromosome CDS1005637 276 - 0.413043
holA LSA1068 DNA-directed DNA polymerase III, delta subunitSubName: Full=DNA-directed DNA polymerase III, delta subunit; EC=2.7.7.7; chromosome CDS1062824 1029 - 0.381924
holB LSA0342 DNA-directed DNA polymerase III, delta prime subunitSubName: Full=DNA-directed DNA polymerase III, delta prime subunit; EC=2.7.7.7; chromosome CDS344321 993 + 0.439074
ligA LSA1551 NAD-dependent DNA ligaseRecName: Full=DNA ligase; EC=6.5.1.2; AltName: Full=Polydeoxyribonucleotide synthase [NAD(+)]; chromosome CDS1521218 2034 - 0.448869
mfd LSA1604 Transcription-repair coupling factor (TRCF)RecName: Full=Transcription-repair-coupling factor; Short=TRCF; EC=3.6.4.-; chromosome CDS1588482 3522 - 0.444634
mutL LSA0363 DNA mismatch repair protein MutLRecName: Full=DNA mismatch repair protein MutL; chromosome CDS366412 1962 + 0.455657
mutS LSA0362 DNA mismatch repair protein MutSRecName: Full=DNA mismatch repair protein MutS; chromosome CDS363788 2604 + 0.436636
nfo LSA0868 Endodeoxyribonuclease type IVRecName: Full=Probable endonuclease 4; EC=3.1.21.2; AltName: Full=Endodeoxyribonuclease IV; AltName: Full=Endonuclease IV; chromosome CDS856511 903 + 0.409745
ogt LSA1843 Methylated-DNA-protein-cysteineS-methyltransferaseSubName: Full=Methylated-DNA-protein-cysteineS-methyltransferas e; EC=2.1.1.63; chromosome CDS1834120 489 + 0.486708
parC LSA0975 Topoisomerase IV, subunit ARecName: Full=DNA topoisomerase 4 subunit A; EC=5.99.1.3; AltName: Full=Topoisomerase IV subunit A; chromosome CDS966009 2466 - 0.439173
parE LSA0976 Topoisomerase IV, subunit BRecName: Full=DNA topoisomerase 4 subunit B; EC=5.99.1.3; AltName: Full=Topoisomerase IV subunit B; chromosome CDS968504 1992 - 0.448293
pcrA LSA1552 ATP-dependent DNA helicaseSubName: Full=ATP-dependent DNA helicase; EC=3.6.1.-; chromosome CDS1523766 2250 - 0.424444
polA LSA1406 DNA-directed DNA polymerase IRecName: Full=DNA polymerase; EC=2.7.7.7; chromosome CDS1371955 2661 - 0.414506
polC LSA1256 DNA-directed DNA polymerase III, polC-typeRecName: Full=DNA polymerase III PolC-type; Short=PolIII; EC=2.7.7.7; chromosome CDS1233491 4341 - 0.449896
priA LSA0688 Primosomal replication protein N (factor Y)SubName: Full=Primosomal replication protein N (Factor Y); chromosome CDS684438 2418 + 0.457403
radC LSA0852 DNA repair protein (RadC)RecName: Full=UPF0758 protein LCA_0852; chromosome CDS840632 675 + 0.423704
recA LSA0487 DNA recombinase ARecName: Full=Protein RecA; AltName: Full=Recombinase A; chromosome CDS504928 1068 + 0.433521
recD LSA0805 Exodeoxyribonuclease V, alpha subunitSubName: Full=Exodeoxyribonuclease V, alpha subunit; EC=3.1.11.5; chromosome CDS797333 2529 + 0.430605
recF LSA0004 DNA repair and recombination protein RecF (Recombinational DNA repair ATPase)RecName: Full=DNA replication and repair protein RecF; chromosome CDS3350 1128 + 0.429078
recG LSA0699 ATP-dependent DNA helicase, RecGSubName: Full=ATP-dependent DNA helicase, RecG; EC=3.6.1.-; chromosome CDS697657 2043 + 0.455702
recJ LSA1277 Single-strand DNA-specific exonuclease RecJSubName: Full=Single-strand DNA-specific exonuclease RecJ; chromosome CDS1257719 2313 - 0.437095
recN LSA0682 DNA repair and genetic recombination protein NRecName: Full=DNA repair protein RecN; AltName: Full=Recombination protein N; chromosome CDS679752 1704 + 0.436033
recO LSA0879 DNA repair protein ORecName: Full=DNA repair protein RecO; AltName: Full=Recombination protein O; chromosome CDS864850 819 + 0.404151
recQ1 LSA1020 ATP-dependent DNA helicase (RecQ)SubName: Full=ATP-dependent DNA helicase (RecQ); EC=3.6.1.-; chromosome CDS1010465 1446 - 0.427386
recQ2 LSA1846 ATP-dependent DNA helicase (RecQ)SubName: Full=ATP-dependent DNA helicase (RecQ); EC=3.6.1.-; chromosome CDS1835766 1749 - 0.422527
recR LSA0338 Recombination DNA repair protein RecRRecName: Full=Recombination protein RecR; chromosome CDS342318 597 + 0.432161
rexAC LSA0911 ATP-dependent exonuclease, subunit A (C terminal fragment), authentic frameshiftSubName: Full=ATP-dependent exonuclease, subunit A (C terminal), authentic frameshift; chromosome CDS900301 1056 + 0.433712
rexAN LSA0910 ATP-dependent exonuclease, subunit A (N terminal fragment), authentic frameshiftRecName: Full=ATP-dependent helicase/nuclease subunit A; EC=3.1.-.-; EC=3.6.4.12; AltName: Full=ATP-dependent helicase/nuclease AddA; chromosome CDS897612 2673 + 0.42312
rexB LSA0909 ATP-dependent exonuclease, subunit B (ATP-dependent exonuclease, subunit B)RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B; EC=3.1.-.-; EC=3.6.4.12; AltName: Full=ATP-dependent helicase/nuclease RexB; chromosome CDS894068 3561 + 0.415614
rnhB LSA0993 Ribonuclease HII (RNase HII)RecName: Full=Ribonuclease HII; Short=RNase HII; EC=3.1.26.4; chromosome CDS986422 762 - 0.464567
rnhC LSA0391 Ribonuclease HIII (RNase HIII)RecName: Full=Ribonuclease HIII; Short=RNase HIII; EC=3.1.26.4; chromosome CDS399024 918 - 0.454248
ruvA LSA0366 Holliday junction DNA helicase RuvARecName: Full=Holliday junction ATP-dependent DNA helicase RuvA; EC=3.6.4.12; chromosome CDS369905 612 + 0.423203
ruvB LSA0367 Holliday junction DNA helicase RuvBRecName: Full=Holliday junction ATP-dependent DNA helicase RuvB; EC=3.6.4.12; chromosome CDS370529 1008 + 0.464286
ssb LSA0008 Single-stranded DNA binding protein (Ssb)RecName: Full=Single-stranded DNA-binding protein; chromosome CDS9683 513 + 0.423002
tag1 LSA0039 3-methyl-adenine DNA glycosylase ISubName: Full=3-methyl-adenine DNA glycosylase I; EC=3.2.2.20; chromosome CDS37243 546 + 0.470696
tag2 LSA1323 3-methyl-adenine DNA glycosylase ISubName: Full=3-methyl-adenine DNA glycosylase I; EC=3.2.2.20; chromosome CDS1293849 546 - 0.423077
tnpA1-IS1520 LSA0145 Transposase (orfA) of IS1520 (IS3 family)SubName: Full=Transposase (OrfA) of IS1520 (IS3 family); chromosome CDS140383 252 - 0.369048
tnpA1-ISLsa1 LSA0141 Transposase of ISLsa1 (IS30 family)SubName: Full=Transposase of ISLsa1 (IS30 family); chromosome CDS135980 921 - 0.442997
tnpA1-ISLsa2 LSA0262 Transposase (orfA) of ISLsa2 (IS150 family)SubName: Full=Transposase (OrfA) of ISLsa2 (IS150 family); chromosome CDS257392 318 - 0.355346
tnpA2-IS1520 LSA0220_a Transposase (orfA) of IS1520 (IS3 family)SubName: Full=Transposase (OrfA) of IS1520 (IS3 family); chromosome CDS215918 252 + 0.369048
tnpA2-ISLsa1 LSA0216_a Transposase of ISLsa1 (IS30 family)SubName: Full=Transposase of ISLsa1 (IS30 family); chromosome CDS210685 921 + 0.442997
tnpA2-ISLsa2 LSA0473 Transposase (orfA) of ISLsa2 (IS150 family)SubName: Full=Transposase (OrfA) of ISLsa2 (IS150 family); chromosome CDS491057 318 + 0.380503
tnpA3-IS1520 LSA0256_c Transposase (orfA) of IS1520 (IS3 family)SubName: Full=Transposase (OrfA) of IS1520 (IS3 family); chromosome CDS252329 252 - 0.369048
tnpA3-ISLsa1 LSA1152_a Transposase of ISLsa1 (IS30 family)SubName: Full=Transposase of ISLsa1 (IS30 family); chromosome CDS1141271 921 - 0.441911
tnpA3N-ISLsa2 LSA0904 Transposase (orfA) of ISLsa2 (N-terminal fragment), authentic frameshiftSubName: Full=Transposase (OrfA) of ISLsa2 (N-terminal), authentic frameshift; chromosome CDS889249 153 - 0.398693
tnpA4-IS1520 LSA1183_a Transposase (orfA) of IS1520 (IS3 family)SubName: Full=Transposase (OrfA) of IS1520 (IS3 family); chromosome CDS1165708 252 + 0.369048
tnpA5-IS1520 LSA1286_a Transposase (orfA) of IS1520 (IS3 family)SubName: Full=Transposase (OrfA) of IS1520 (IS3 family); chromosome CDS1264928 252 + 0.369048
tnpB-ISLsa3 LSA1181 Transposase (orfB) of ISLsa3 (IS4 family)SubName: Full=Transposase (OrfB) of ISLsa3 (IS4 family); chromosome CDS1163443 783 + 0.366539
tnpB1-IS1520 LSA0144 Transposase (orfB) of IS1520 (IS3 family)SubName: Full=Transposase (OrfB) of IS1520 (IS3 family); chromosome CDS139565 798 - 0.388471
tnpB1-ISLsa2 LSA0261 Transposase (orfB) of ISLsa2 (IS150 family)SubName: Full=Transposase (OrfB) of ISLsa2 (IS150 family); chromosome CDS256538 813 - 0.360394
tnpB2-IS1520 LSA0220_b Transposase (orfB) of IS1520 (IS3 family)SubName: Full=Transposase (OrfB) of IS1520 (IS3 family); chromosome CDS216190 798 + 0.390977
tnpB2-ISLsa2 LSA0474 Transposase (orfB) of ISLsa2 (IS150 family)SubName: Full=Transposase (OrfB) of ISLsa2 (IS150 family); chromosome CDS491416 813 + 0.357934
tnpB3-IS1520 LSA0256_b Transposase (orfB) of IS1520 (IS3 family)SubName: Full=Transposase (OrfB) of IS1520 (IS3 family); chromosome CDS251511 798 - 0.389724
tnpB3-ISLsa2 LSA0903_a Transposase (orfB) of ISLsa2 (IS150 family)SubName: Full=Transposase (OrfB) of ISLsa2 (IS150 family); chromosome CDS888230 813 - 0.357934
tnpB4-IS1520 LSA1183_b Transposase (orfB) of IS1520 (IS3 family)SubName: Full=Transposase (OrfB) of IS1520 (IS3 family); chromosome CDS1165980 798 + 0.389724
tnpB5-IS1520 LSA1286_b Transposase (orfB) of IS1520 (IS3 family)SubName: Full=Transposase (OrfB) of IS1520 (IS3 family); chromosome CDS1265200 798 + 0.389724
topA LSA0989 DNA topoisomerase IRecName: Full=DNA topoisomerase 1; EC=5.99.1.2; AltName: Full=DNA topoisomerase I; chromosome CDS981736 2085 - 0.409113
topB LSA0761 DNA topoisomerase IIIRecName: Full=DNA topoisomerase; EC=5.99.1.2; chromosome CDS755103 2073 + 0.430777
ung LSA1344 Uracil-DNA glycosylaseRecName: Full=Uracil-DNA glycosylase; Short=UDG; EC=3.2.2.27; chromosome CDS1314677 690 - 0.450725
uvrA1 LSA0524 Excinuclease ABC, subunit ARecName: Full=UvrABC system protein A; Short=UvrA protein; AltName: Full=Excinuclease ABC subunit A; chromosome CDS541976 2853 + 0.433929
uvrA2 LSA1051 Excinuclease ABC, ATP binding subunitSubName: Full=Excinuclease ABC, ATP binding subunit; chromosome CDS1043835 2526 - 0.451306
uvrB LSA0523 Excinuclease ABC, subunit BRecName: Full=UvrABC system protein B; Short=Protein UvrB; AltName: Full=Excinuclease ABC subunit B; chromosome CDS539963 2004 + 0.424651
uvrC LSA1055 Excinuclease ABC, subunit CRecName: Full=UvrABC system protein C; Short=Protein UvrC; AltName: Full=Excinuclease ABC subunit C; chromosome CDS1049141 1779 - 0.438449
xerC1 LSA0967 Site-specific DNA-tyrosine recombinase, XerCSubName: Full=Site-specific DNA-tyrosine recombinase, XerC; chromosome CDS956249 1059 + 0.443815
xerC2 LSA0986 Site-specific DNA-tyrosine recombinase, XerCRecName: Full=Tyrosine recombinase XerC; chromosome CDS979424 912 - 0.444079
xseA LSA0677 Exodeoxyribonuclease VII, large subunitRecName: Full=Exodeoxyribonuclease 7 large subunit; EC=3.1.11.6; AltName: Full=Exodeoxyribonuclease VII large subunit; Short=Exonuclease VII large subunit; chromosome CDS675878 1350 + 0.441481
xseB LSA0678 Exodeoxyribonuclease VII, small subunitRecName: Full=Exodeoxyribonuclease 7 small subunit; EC=3.1.11.6; AltName: Full=Exodeoxyribonuclease VII small subunit; Short=Exonuclease VII small subunit; chromosome CDS677229 231 + 0.411255