TitleGenColors Logo
spacer
Home spacerGenomes
spacerMethods
spacerDocumentation spacerContactspacer spacerLeibniz FLI
spacer
QuickSearch
2024-04-29 02:51:44

Gene list

Applied filters:

COG category: Replication, recombination and repair
Organism: Lactobacillus sakei subsp. sakei 23K, 23K

Number of genes found: 121

Free access
Sort by:

 

Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Lactobacillus sakei subsp. sakei 23K, 23K
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA LSA1593 Putative nucleotide diphosphate hydrolase, NUDIX familychromosome CDS1571243 585 + 0.391453
NA LSA1162 DNA-repair protein (SOS response UmuC-like protein)chromosome CDS1148425 1305 - 0.419157
NA LSA0916 Putative DNA repair protein, endonuclease IIIchromosome CDS906987 651 + 0.465438
NA LSA0623 Putative metallo-phosphoesterasechromosome CDS624948 1194 + 0.422111
NA LSA0393 DNA mismatch repair protein, MutS familychromosome CDS400730 2364 + 0.428088
NA LSA0944 Putative ribonuclease Hchromosome CDS932116 384 - 0.421875
NA LSA1661 Putative nucleotide hydrolase, NUDIX familychromosome CDS1644816 495 - 0.440404
NA LSA1097 Putative ADP-ribose phosphorylase, NUDIX familychromosome CDS1092343 501 - 0.44511
NA LSA0385 Putative ATP-dependent DNA/RNA helicasechromosome CDS392226 1356 + 0.402655
NA LSA0273 Putative DNA helicase (C-terminal fragment), authentic frameshitchromosome CDS267432 1092 - 0.450549
NA LSA1854 DNA alkylation repair enzymechromosome CDS1841989 642 - 0.454829
NA LSA1615 Putative ATP-dependent RNA helicasechromosome CDS1600484 1593 - 0.417451
NA LSA1720_a Hypothetical protein (C-terminal fragment), authentic frameshiftchromosome CDS1702456 2370 - 0.290295
NA LSA0492 Putative bacterial type II secretion/competence system, ATP-dependent DNA helicase ComFA-likechromosome CDS509945 1338 + 0.472347
NA LSA1476 Putative A/G-specific adenine glycosylasechromosome CDS1452837 1104 - 0.451087
NA LSA1656 Hypothetical primase-related proteinchromosome CDS1639764 570 - 0.422807
NA LSA0143 Putative adenine-specific DNA methyltransferasechromosome CDS138418 864 - 0.355324
NA LSA0076 Putative DNA invertase (Plasmidic Resolvase)chromosome CDS71444 555 + 0.416216
NA LSA0921 Putative adenine-specific DNA methyltransferasechromosome CDS912242 1152 + 0.418403
NA LSA1266 Putative endonucleasechromosome CDS1249137 276 - 0.438406
NA LSA0912 Putative ATP-dependent helicase, DinG familychromosome CDS901422 2835 + 0.432451
NA LSA1657 Putative deoxyribonuclease, TatD familychromosome CDS1640330 777 - 0.444015
NA LSA0924 Putative site-specific recombinase, phage integrase familychromosome CDS915240 585 + 0.381197
NA LSA0774 Putative ADP-ribose pyrophosphatase, NUDIX familychromosome CDS770814 543 + 0.418048
NA LSA0543 Putative 3-methy-adenine DNA glycosylase Ichromosome CDS564907 642 - 0.492212
NA LSA0146 Putative adenine-specifique DNA methyltransferasechromosome CDS140791 786 + 0.330789
NA LSA1071 Putative bacterial type II secretion/competence system, protein ComEA-likechromosome CDS1066659 705 - 0.443972
NA LSA0389 Hypothetical proteinchromosome CDS397932 444 + 0.43018
NA LSA1160 Hypothetical proteinchromosome CDS1147580 252 - 0.34127
NA LSA1074 Putative adenine-specific DNA methyltransferasechromosome CDS1068996 555 - 0.418018
NA LSA0992 Putative DNA processing protein, DprA/SMF familychromosome CDS985501 867 - 0.438293
NA LSA1534 Putative ATP-dependent RNA helicasechromosome CDS1505389 1347 - 0.442465
NA LSA0147 Putative DNA-repair helicasechromosome CDS142108 1755 + 0.346439
NA LSA0586 Site-specific recombinase, prophage lsa1 integrasechromosome CDS595887 1158 - 0.385147
NA LSA0839 Putative DNA-replication helicasechromosome CDS824558 1281 - 0.472287
NA LSA0809 Putative DNA alkylation repair enzymechromosome CDS802383 1101 + 0.448683
NA LSA0148 Putative DNA-repair ATPasechromosome CDS144009 2043 + 0.323054
NA LSA1299 Putative adenine-specific DNA methyltransferasechromosome CDS1276109 1011 - 0.379822
XerD LSA1028 Site-specific DNA tyrosine recombinase, XerDchromosome CDS1016756 885 - 0.432768
dinP LSA0382 DNA-damage-inducible protein Pchromosome CDS388652 1131 + 0.444739
dnaA LSA0001 Chromosomal replication initiation protein Achromosome CDS210 1347 + 0.427617
dnaB LSA1402 Chromosome replication initiation/membrane attachment protein Bchromosome CDS1368080 1380 - 0.407971
dnaC LSA0012 Replicative DNA helicase Cchromosome CDS13323 1395 + 0.445161
dnaD LSA0915 DNA replication protein DnaD (Primosomal protein DnaD)chromosome CDS906340 624 + 0.403846
dnaE LSA1034 DNA-directed DNA polymerase III, alpha subunitchromosome CDS1022722 3333 - 0.446445
dnaG LSA0883 DNA primase Gchromosome CDS869440 1884 + 0.441083
dnaI LSA1401 Primosomal protein DnaI (Helicase loader)chromosome CDS1367154 927 - 0.434736
dnaN LSA0002 DNA-directed DNA polymerase III, beta subunitchromosome CDS1734 1140 + 0.414912
dnaQ LSA1339 DNA-directed DNA polymerase III, epsilon subunitchromosome CDS1310669 537 + 0.417132
dnaX LSA0336 DNA-directed DNA polymerase III, gamma/tau subunitchromosome CDS340242 1716 + 0.435897
exoA LSA1338 Exodeoxyribonuclease IIIchromosome CDS1309869 765 + 0.39085
fpg LSA1405 Formamidopyrimidine-DNA glycosylasechromosome CDS1371107 837 - 0.458781
gyrA LSA0006 DNA gyrase, A subunitchromosome CDS6538 2574 + 0.445221
gyrB LSA0005 DNA gyrase, B subunitchromosome CDS4514 1977 + 0.438037
hbsU LSA1015 Histone-like DNA-binding protein HUchromosome CDS1005637 276 - 0.413043
holA LSA1068 DNA-directed DNA polymerase III, delta subunitchromosome CDS1062824 1029 - 0.381924
holB LSA0342 DNA-directed DNA polymerase III, delta prime subunitchromosome CDS344321 993 + 0.439074
ligA LSA1551 NAD-dependent DNA ligasechromosome CDS1521218 2034 - 0.448869
mfd LSA1604 Transcription-repair coupling factor (TRCF)chromosome CDS1588482 3522 - 0.444634
mutL LSA0363 DNA mismatch repair protein MutLchromosome CDS366412 1962 + 0.455657
mutS LSA0362 DNA mismatch repair protein MutSchromosome CDS363788 2604 + 0.436636
nfo LSA0868 Endodeoxyribonuclease type IVchromosome CDS856511 903 + 0.409745
ogt LSA1843 Methylated-DNA-protein-cysteineS-methyltransferasechromosome CDS1834120 489 + 0.486708
parC LSA0975 Topoisomerase IV, subunit Achromosome CDS966009 2466 - 0.439173
parE LSA0976 Topoisomerase IV, subunit Bchromosome CDS968504 1992 - 0.448293
pcrA LSA1552 ATP-dependent DNA helicasechromosome CDS1523766 2250 - 0.424444
polA LSA1406 DNA-directed DNA polymerase Ichromosome CDS1371955 2661 - 0.414506
polC LSA1256 DNA-directed DNA polymerase III, polC-typechromosome CDS1233491 4341 - 0.449896
priA LSA0688 Primosomal replication protein N (factor Y)chromosome CDS684438 2418 + 0.457403
radC LSA0852 DNA repair protein (RadC)chromosome CDS840632 675 + 0.423704
recA LSA0487 DNA recombinase Achromosome CDS504928 1068 + 0.433521
recD LSA0805 Exodeoxyribonuclease V, alpha subunitchromosome CDS797333 2529 + 0.430605
recF LSA0004 DNA repair and recombination protein RecF (Recombinational DNA repair ATPase)chromosome CDS3350 1128 + 0.429078
recG LSA0699 ATP-dependent DNA helicase, RecGchromosome CDS697657 2043 + 0.455702
recJ LSA1277 Single-strand DNA-specific exonuclease RecJchromosome CDS1257719 2313 - 0.437095
recN LSA0682 DNA repair and genetic recombination protein Nchromosome CDS679752 1704 + 0.436033
recO LSA0879 DNA repair protein Ochromosome CDS864850 819 + 0.404151
recQ1 LSA1020 ATP-dependent DNA helicase (RecQ)chromosome CDS1010465 1446 - 0.427386
recQ2 LSA1846 ATP-dependent DNA helicase (RecQ)chromosome CDS1835766 1749 - 0.422527
recR LSA0338 Recombination DNA repair protein RecRchromosome CDS342318 597 + 0.432161
rexAC LSA0911 ATP-dependent exonuclease, subunit A (C terminal fragment), authentic frameshiftchromosome CDS900301 1056 + 0.433712
rexAN LSA0910 ATP-dependent exonuclease, subunit A (N terminal fragment), authentic frameshiftchromosome CDS897612 2673 + 0.42312
rexB LSA0909 ATP-dependent exonuclease, subunit B (ATP-dependent exonuclease, subunit B)chromosome CDS894068 3561 + 0.415614
rnhB LSA0993 Ribonuclease HII (RNase HII)chromosome CDS986422 762 - 0.464567
rnhC LSA0391 Ribonuclease HIII (RNase HIII)chromosome CDS399024 918 - 0.454248
ruvA LSA0366 Holliday junction DNA helicase RuvAchromosome CDS369905 612 + 0.423203
ruvB LSA0367 Holliday junction DNA helicase RuvBchromosome CDS370529 1008 + 0.464286
ssb LSA0008 Single-stranded DNA binding protein (Ssb)chromosome CDS9683 513 + 0.423002
tag1 LSA0039 3-methyl-adenine DNA glycosylase Ichromosome CDS37243 546 + 0.470696
tag2 LSA1323 3-methyl-adenine DNA glycosylase Ichromosome CDS1293849 546 - 0.423077
tnpA1-IS1520 LSA0145 Transposase (orfA) of IS1520 (IS3 family)chromosome CDS140383 252 - 0.369048
tnpA1-ISLsa1 LSA0141 Transposase of ISLsa1 (IS30 family)chromosome CDS135980 921 - 0.442997
tnpA1-ISLsa2 LSA0262 Transposase (orfA) of ISLsa2 (IS150 family)chromosome CDS257392 318 - 0.355346
tnpA2-IS1520 LSA0220_a Transposase (orfA) of IS1520 (IS3 family)chromosome CDS215918 252 + 0.369048
tnpA2-ISLsa1 LSA0216_a Transposase of ISLsa1 (IS30 family)chromosome CDS210685 921 + 0.442997
tnpA2-ISLsa2 LSA0473 Transposase (orfA) of ISLsa2 (IS150 family)chromosome CDS491057 318 + 0.380503
tnpA3-IS1520 LSA0256_c Transposase (orfA) of IS1520 (IS3 family)chromosome CDS252329 252 - 0.369048
tnpA3-ISLsa1 LSA1152_a Transposase of ISLsa1 (IS30 family)chromosome CDS1141271 921 - 0.441911
tnpA3N-ISLsa2 LSA0904 Transposase (orfA) of ISLsa2 (N-terminal fragment), authentic frameshiftchromosome CDS889249 153 - 0.398693
tnpA4-IS1520 LSA1183_a Transposase (orfA) of IS1520 (IS3 family)chromosome CDS1165708 252 + 0.369048
tnpA5-IS1520 LSA1286_a Transposase (orfA) of IS1520 (IS3 family)chromosome CDS1264928 252 + 0.369048
tnpB-ISLsa3 LSA1181 Transposase (orfB) of ISLsa3 (IS4 family)chromosome CDS1163443 783 + 0.366539
tnpB1-IS1520 LSA0144 Transposase (orfB) of IS1520 (IS3 family)chromosome CDS139565 798 - 0.388471
tnpB1-ISLsa2 LSA0261 Transposase (orfB) of ISLsa2 (IS150 family)chromosome CDS256538 813 - 0.360394
tnpB2-IS1520 LSA0220_b Transposase (orfB) of IS1520 (IS3 family)chromosome CDS216190 798 + 0.390977
tnpB2-ISLsa2 LSA0474 Transposase (orfB) of ISLsa2 (IS150 family)chromosome CDS491416 813 + 0.357934
tnpB3-IS1520 LSA0256_b Transposase (orfB) of IS1520 (IS3 family)chromosome CDS251511 798 - 0.389724
tnpB3-ISLsa2 LSA0903_a Transposase (orfB) of ISLsa2 (IS150 family)chromosome CDS888230 813 - 0.357934
tnpB4-IS1520 LSA1183_b Transposase (orfB) of IS1520 (IS3 family)chromosome CDS1165980 798 + 0.389724
tnpB5-IS1520 LSA1286_b Transposase (orfB) of IS1520 (IS3 family)chromosome CDS1265200 798 + 0.389724
topA LSA0989 DNA topoisomerase Ichromosome CDS981736 2085 - 0.409113
topB LSA0761 DNA topoisomerase IIIchromosome CDS755103 2073 + 0.430777
ung LSA1344 Uracil-DNA glycosylasechromosome CDS1314677 690 - 0.450725
uvrA1 LSA0524 Excinuclease ABC, subunit Achromosome CDS541976 2853 + 0.433929
uvrA2 LSA1051 Excinuclease ABC, ATP binding subunitchromosome CDS1043835 2526 - 0.451306
uvrB LSA0523 Excinuclease ABC, subunit Bchromosome CDS539963 2004 + 0.424651
uvrC LSA1055 Excinuclease ABC, subunit Cchromosome CDS1049141 1779 - 0.438449
xerC1 LSA0967 Site-specific DNA-tyrosine recombinase, XerCchromosome CDS956249 1059 + 0.443815
xerC2 LSA0986 Site-specific DNA-tyrosine recombinase, XerCchromosome CDS979424 912 - 0.444079
xseA LSA0677 Exodeoxyribonuclease VII, large subunitchromosome CDS675878 1350 + 0.441481
xseB LSA0678 Exodeoxyribonuclease VII, small subunitchromosome CDS677229 231 + 0.411255