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2024-04-29 18:45:59

Gene list

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COG category: Replication, recombination and repair
Organism: Rhodopseudomonas palustris BisB18, BisB18

Number of genes found: 169

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Rhodopseudomonas palustris BisB18, BisB18
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA RPC_0628 phage integrasechromosome CDS677004 1218 + 0.589491
NA RPC_1345 methylated-DNA--protein-cysteinemethyltransferasechromosome CDS1466719 543 + 0.677716
NA RPC_0168 NUDIX hydrolasechromosome CDS184271 528 + 0.653409
NA RPC_0970 DNA primasechromosome CDS1064016 2043 + 0.679393
NA RPC_3294 DNA ligase, NAD-dependentchromosome CDS3647778 2388 - 0.60469
NA RPC_3293 Exonucleasechromosome CDS3646806 945 - 0.51746
NA RPC_0604 IstB-like ATP-binding proteinchromosome CDS655804 834 + 0.604317
NA RPC_0179 primosomal protein N'chromosome CDS195702 2205 - 0.675737
NA RPC_3651 type III restriction enzyme, res subunitchromosome CDS4061871 3381 + 0.610174
NA RPC_4436 NUDIX hydrolasechromosome CDS4943814 543 - 0.694291
NA RPC_1383 NUDIX hydrolasechromosome CDS1508439 582 + 0.69244
NA RPC_0278 exodeoxyribonuclease III (xth)chromosome CDS296852 813 + 0.628536
NA RPC_0149 MobA/MobL proteinchromosome CDS163391 3105 + 0.661514
NA RPC_0001 chromosomal replication initiator protein DnaAchromosome CDS758 1422 + 0.660338
NA RPC_2988 conserved hypothetical proteinchromosome CDS3269273 594 - 0.644781
NA RPC_4440 transposase IS116/IS110/IS902chromosome CDS4947834 1041 - 0.670509
NA RPC_0180 Tyrosine recombinase XerCchromosome CDS198407 975 + 0.688205
NA RPC_3722 Nucleoside diphosphate pyrophosphatasechromosome CDS4142810 645 - 0.649612
NA RPC_4057 putative transposasechromosome CDS4507604 564 - 0.62766
NA RPC_2255 Holliday junction resolvase YqgFchromosome CDS2458008 492 - 0.680894
NA RPC_4366 DNA methylase N-4/N-6chromosome CDS4869471 1134 + 0.641093
NA RPC_3867 phage integrasechromosome CDS4298460 1203 + 0.611804
NA RPC_4308 hypothetical proteinchromosome CDS4808148 2109 + 0.529161
NA RPC_2755 single-strand binding proteinchromosome CDS2993105 510 - 0.643137
NA RPC_0170 NUDIX hydrolasechromosome CDS186446 537 + 0.674115
NA RPC_2315 DNA polymerase III chi subunit, HolCchromosome CDS2517783 453 + 0.622517
NA RPC_4520 MobA/MobL proteinchromosome CDS5042746 2997 + 0.66333
NA RPC_3658 phage integrasechromosome CDS4074302 1413 - 0.576079
NA RPC_3642 transposase IS116/IS110/IS902chromosome CDS4050490 1041 - 0.670509
NA RPC_1565 hypothetical proteinchromosome CDS1694742 2010 - 0.632836
NA RPC_3062 phage integrasechromosome CDS3393938 1257 - 0.634049
NA RPC_4522 phage integrasechromosome CDS5046242 1290 - 0.615504
NA RPC_4491 IstB-like ATP-binding proteinchromosome CDS5003355 834 + 0.604317
NA RPC_3653 type I restriction enzyme StySPI specificity proteinchromosome CDS4066717 1383 + 0.570499
NA RPC_0957 Ferritin and Dpschromosome CDS1052074 528 + 0.623106
NA RPC_3703 DEAD/DEAH box helicase-likechromosome CDS4125896 1446 + 0.660443
NA RPC_3080 conserved hypothetical protein, putative DNA helicasechromosome CDS3412788 5952 + 0.645497
NA RPC_1966 transposase IS116/IS110/IS902chromosome CDS2139810 1041 + 0.670509
NA RPC_3543 SMC protein-likechromosome CDS3937108 2088 - 0.619253
NA RPC_3652 N-6 DNA methylasechromosome CDS4065251 1470 + 0.598639
NA RPC_4850 NUDIX hydrolasechromosome CDS5411215 1029 + 0.65792
NA RPC_4688 nuclease (SNase-like)chromosome CDS5248433 726 + 0.690083
NA RPC_0337 transcriptional regulator, AraC familychromosome CDS357889 933 - 0.696677
NA RPC_0320 protein of unknown function UPF0102chromosome CDS341399 408 - 0.70098
NA RPC_0003 DNA replication and repair protein RecFchromosome CDS3768 1140 + 0.697368
NA RPC_3060 IstB-like ATP-binding proteinchromosome CDS3391288 834 - 0.604317
NA RPC_0523 NUDIX hydrolasechromosome CDS563593 402 - 0.656716
NA RPC_4507 transposase IS200-likechromosome CDS5021283 423 - 0.534279
NA RPC_2433 DNA polymerase III, alpha subunitchromosome CDS2632522 3558 + 0.677066
NA RPC_1389 DNA mismatch repair protein MutLchromosome CDS1514339 1800 - 0.691111
NA RPC_0530 Tyrosine recombinase XerDchromosome CDS573786 963 - 0.66459
NA RPC_0377 formamidopyrimidine-DNA glycosylasechromosome CDS403844 882 - 0.687075
NA RPC_4898 methylated-DNA--protein-cysteinemethyltransferasechromosome CDS5468181 576 + 0.708333
NA RPC_4137 excinuclease ABC, B subunitchromosome CDS4597003 3162 + 0.659393
NA RPC_1733 DNA polymerase III, alpha subunitchromosome CDS1883476 3339 + 0.651093
NA RPC_0906 conserved hypothetical protein 95chromosome CDS1002836 567 - 0.686067
NA RPC_3175 Excinuclease ABC, C subunit-likechromosome CDS3518206 288 - 0.565972
NA RPC_0387 UvrD/REP helicasechromosome CDS418199 3495 + 0.695851
NA RPC_2745 UvrD/REP helicasechromosome CDS2984072 2064 + 0.67781
NA RPC_4373 conserved hypothetical proteinchromosome CDS4875520 537 + 0.60149
NA RPC_0029 nuclease (SNase-like)chromosome CDS34034 591 + 0.698816
NA RPC_4332 DNA-3-methyladenine glycosylase Ichromosome CDS4829757 627 + 0.620415
NA RPC_0286 DNA polymerase III, delta subunitchromosome CDS305856 1029 + 0.678328
NA RPC_4886 HhH-GPDchromosome CDS5453549 663 + 0.708899
NA RPC_1001 IstB-like ATP-binding proteinchromosome CDS1099996 834 - 0.604317
NA RPC_1377 RelB antitoxinchromosome CDS1502143 285 - 0.589474
NA RPC_2244 DNA processing protein DprA, putativechromosome CDS2448361 1119 - 0.722073
NA RPC_4058 transposase and inactivated derivativechromosome CDS4508164 510 - 0.647059
NA RPC_1574 transposase IS116/IS110/IS902chromosome CDS1711120 1041 + 0.670509
NA RPC_3044 IstB-like ATP-binding proteinchromosome CDS3370885 864 - 0.614583
NA RPC_4076 ribonuclease Hchromosome CDS4529874 462 - 0.632035
NA RPC_0772 phage integrasechromosome CDS857202 915 - 0.673224
NA RPC_0901 excinuclease ABC, C subunitchromosome CDS997969 2100 + 0.668571
NA RPC_2833 DEAD/DEAH box helicase-likechromosome CDS3074356 1512 + 0.666005
NA RPC_4229 conserved hypothetical proteinchromosome CDS4705787 2169 - 0.563854
NA RPC_2290 replicative DNA helicasechromosome CDS2489532 1497 - 0.641283
NA RPC_1150 exodeoxyribonuclease VII, small subunitchromosome CDS1252199 249 - 0.654619
NA RPC_0002 DNA polymerase III, beta subunitchromosome CDS2475 1119 + 0.65773
NA RPC_0994 MobA/MobL proteinchromosome CDS1087177 3105 - 0.663446
NA RPC_2677 integration host factor, alpha subunitchromosome CDS2906718 327 + 0.608563
NA RPC_2643 DNA repair protein RecOchromosome CDS2873283 765 + 0.69281
NA RPC_0363 DNA mismatch repair protein MutSchromosome CDS385865 2649 + 0.690072
NA RPC_4362 Radical SAMchromosome CDS4865099 1164 - 0.657216
NA RPC_4359 phage SPO1 DNA polymerase-related proteinchromosome CDS4861321 834 + 0.699041
NA RPC_3750 histone-like DNA-binding proteinchromosome CDS4175910 300 - 0.58
NA RPC_4887 protein of unknown function DUF450chromosome CDS5454361 1164 - 0.554124
NA RPC_4309 DNA-cytosine methyltransferasechromosome CDS4810234 1125 + 0.560889
NA RPC_3416 AAA ATPase, central regionchromosome CDS3803238 1329 - 0.659895
NA RPC_0395 integration host factor, beta subunitchromosome CDS428026 306 - 0.633987
NA RPC_3057 IstB-like ATP-binding proteinchromosome CDS3389011 864 + 0.614583
NA RPC_1732 conserved hypothetical proteinchromosome CDS1882007 1473 + 0.698574
NA RPC_0965 transposase IS116/IS110/IS902chromosome CDS1059275 1041 - 0.670509
NA RPC_4361 Ribonuclease Hchromosome CDS4863966 801 - 0.702871
NA RPC_2397 histone-like DNA-binding proteinchromosome CDS2602734 315 - 0.625397
NA RPC_3685 ATP dependent DNA ligasechromosome CDS4108118 2763 - 0.669562
NA RPC_2610 transcription-repair coupling factorchromosome CDS2840122 3519 + 0.666098
NA RPC_3356 Deoxyribodipyrimidine photolyasechromosome CDS3710243 1452 + 0.694215
NA RPC_1266 Excinuclease ABC, C subunit-likechromosome CDS1381879 330 - 0.569697
NA RPC_3938 Superfamily I DNA and RNA helicases and helicase subunits-likechromosome CDS4381145 4956 - 0.627119
NA RPC_0151 phage integrasechromosome CDS167202 1290 - 0.61938
NA RPC_2328 Chromosomal replication initiator, DnaAchromosome CDS2529499 678 + 0.678466
NA RPC_0339 endonuclease IIIchromosome CDS359419 771 + 0.66537
NA RPC_0210 conserved hypothetical proteinchromosome CDS229343 372 + 0.629032
NA RPC_3311 DNA-directed DNA polymerasechromosome CDS3668824 1299 + 0.675135
NA RPC_4805 Holliday junction DNA helicase RuvAchromosome CDS5362844 618 - 0.686084
NA RPC_3889 hypothetical proteinchromosome CDS4320918 405 - 0.617284
NA RPC_3124 transposase IS116/IS110/IS902chromosome CDS3467573 1041 - 0.670509
NA RPC_0918 NUDIX hydrolasechromosome CDS1016988 666 + 0.68018
NA RPC_2010 transposase IS116/IS110/IS902chromosome CDS2188987 1041 - 0.670509
NA RPC_4621 exodeoxyribonuclease VII, large subunitchromosome CDS5160828 1626 + 0.693727
NA RPC_2608 DEAD/DEAH box helicase-likechromosome CDS2837574 2100 - 0.687143
NA RPC_0376 Excinuclease ABC, C subunit-likechromosome CDS402179 315 + 0.663492
NA RPC_0955 exodeoxyribonuclease Vchromosome CDS1049752 1110 + 0.648649
NA RPC_1207 exodeoxyribonuclease III (xth)chromosome CDS1323099 771 + 0.664073
NA RPC_3405 protein of unknown function DUF1568chromosome CDS3791359 540 - 0.635185
NA RPC_2239 DNA topoisomerasechromosome CDS2443522 2769 - 0.652943
NA RPC_3295 DNA repair protein RecNchromosome CDS3650283 1686 - 0.692764
NA RPC_4848 DNA polymerase III, subunits gamma and tauchromosome CDS5408476 1857 - 0.686053
NA RPC_0402 Excinuclease ABC, C subunit-likechromosome CDS435889 237 + 0.565401
NA RPC_3160 transposase IS116/IS110/IS902chromosome CDS3503692 1041 - 0.670509
NA RPC_2236 NUDIX hydrolasechromosome CDS2439927 735 - 0.708844
NA RPC_0613 HNH endonucleasechromosome CDS666616 558 + 0.616487
NA RPC_2644 DNA topoisomerase IV, A subunitchromosome CDS2874101 2256 + 0.640957
NA RPC_2061 transposase IS116/IS110/IS902chromosome CDS2256253 1041 + 0.670509
NA RPC_2669 Xylose isomerase-like TIM barrelchromosome CDS2900131 948 + 0.531646
NA RPC_3279 UvrD/REP helicasechromosome CDS3629457 2601 + 0.661284
NA RPC_3180 Excinuclease ABC, C subunit-likechromosome CDS3521470 288 - 0.579861
NA RPC_1775 Chromosomal replication initiator, DnaA-likechromosome CDS1929742 396 + 0.719697
NA RPC_2092 transposase IS116/IS110/IS902chromosome CDS2291155 1041 + 0.669549
NA RPC_2041 hypothetical proteinchromosome CDS2223087 771 - 0.623865
NA RPC_4854 ATP-dependent helicase HrpBchromosome CDS5414684 2634 - 0.705391
NA RPC_2706 TatD-related deoxyribonucleasechromosome CDS2934062 792 + 0.636364
NA RPC_1567 recA proteinchromosome CDS1697926 1092 + 0.643773
NA RPC_3936 helicase-likechromosome CDS4376404 3240 + 0.610802
NA RPC_3926 Superfamily I DNA and RNA helicases and helicase subunits-likechromosome CDS4357953 3573 + 0.598377
NA RPC_2757 excinuclease ABC, A subunitchromosome CDS2995093 3006 + 0.646707
NA RPC_1185 metallophosphoesterasechromosome CDS1292351 1227 + 0.681337
NA RPC_3275 transposase IS116/IS110/IS902chromosome CDS3625546 1041 + 0.670509
NA RPC_0005 DNA gyrase, B subunitchromosome CDS6602 2442 + 0.649058
NA RPC_3910 transposase, mutator typechromosome CDS4340210 1200 + 0.661667
NA RPC_4368 A/G-specific adenine glycosylasechromosome CDS4871079 1116 - 0.687276
NA RPC_2813 single-stranded-DNA-specific exonuclease RecJchromosome CDS3053695 1842 - 0.696526
NA RPC_1460 Type II restriction enzyme methylase subunits-likechromosome CDS1591582 3561 + 0.60629
NA RPC_0751 ATP dependent DNA ligasechromosome CDS828091 1737 + 0.66494
NA RPC_3939 transposase, mutator typechromosome CDS4386551 1200 + 0.661667
NA RPC_0297 DNA polymerase III, epsilon subunitchromosome CDS319546 696 + 0.632184
NA RPC_4806 crossover junction endodeoxyribonuclease RuvCchromosome CDS5363724 528 - 0.670455
NA RPC_2496 exodeoxyribonuclease III (xth)chromosome CDS2707242 804 - 0.645522
NA RPC_2251 NUDIX hydrolasechromosome CDS2454275 477 + 0.643606
NA RPC_0876 DEAD/DEAH box helicase-likechromosome CDS965338 1980 + 0.682828
NA RPC_2584 DNA gyrase, A subunitchromosome CDS2807631 2784 + 0.65158
NA RPC_4803 Holliday junction DNA helicase RuvBchromosome CDS5361182 1050 - 0.693333
NA RPC_3661 Excinuclease ABC, C subunit-likechromosome CDS4077080 306 + 0.660131
NA RPC_2632 Uracil-DNA glycosylase superfamilychromosome CDS2863542 681 - 0.679883
NA RPC_0545 helicase-likechromosome CDS590709 3510 + 0.681766
NA RPC_2042 transposase and inactivated derivativechromosome CDS2223854 510 - 0.631373
NA RPC_4857 DNA polymerase Ichromosome CDS5419471 3066 + 0.665362
NA RPC_4846 recombination protein RecRchromosome CDS5407524 606 - 0.676568
NA RPC_0575 DNA repair protein RadCchromosome CDS626833 729 - 0.657064
NA RPC_3542 UvrD/REP helicasechromosome CDS3935093 2019 - 0.607727
NA RPC_1129 NUDIX hydrolasechromosome CDS1228430 471 - 0.62845
NA RPC_4622 transposase IS116/IS110/IS902chromosome CDS5162645 1041 + 0.670509
NA RPC_3656 Resolvase-likechromosome CDS4071802 747 - 0.5917
NA RPC_2571 DNA-3-methyladenine glycosylasechromosome CDS2792464 675 - 0.674074
NA RPC_2984 ATP-dependent DNA helicase RecQchromosome CDS3265172 1803 + 0.66223
NA RPC_2827 DNA topoisomerase IV, B subunitchromosome CDS3069305 2058 + 0.656949
NA RPC_4081 protein of unknown function DUF1568chromosome CDS4534532 534 + 0.593633
NA RPC_2704 ATPase involved in DNA replication-likechromosome CDS2931365 1041 + 0.711816
NA RPC_4152 DNA methylase N-4/N-6chromosome CDS4611691 1635 - 0.552294