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# Chlamydophila caviae GPIC

>CCA00378 integration host factor beta-subunit, putative
MATMTKKKLISTISQDHKIHPNHVRTVIQNFLDKMTDALVKGDRLEFRDF
GVLQVVERKPKVGRNPKNATVPIHIPARRAVKFTPGKRMKRLIETPSKHS
>CCAA00005 virulence protein pGP2-D
MVKSENQIIKSSLHLENQKFGRKPQLSEDQLELFSSICTESKIEVIGLDL
QPSHYHALAAIQKLLTATNYRGNLEGSYLSRETNTFKFEGTIPRIKFTKA
EYLEAYGVKKYKTARNKNEFGGKEALIALEALYHLGNEPYLIVATRKRWN
KGEEVVDRYQTFSPILRICEGWEGLTPKENKALDEEPFLNLISKKHKGFI
IEPCPIIVDQIDSYFVLKPANMYQEIKLRFPNASKFTYTFIDWIVSTATR
KKMNSSGLKEWPDKIEIGFETLSYTLRMNRYITSRNWKKIESAINRCIEI
AIELKWLNKHERIQGKTISKKEVFYLNKSKFQQISTNKTIQNTTNNN
>CCA00027 topoisomerase, subunit B, putative
MATYTEASVVSLASLEHIRLRAGMYIGRLGDGSQVEDGIYTLFKEVVDNA
IDEFIMGHGKRISISTQATSVTVRDYGRGIPLGKMIECVSKINTGAKYTQ
DVFHFSVGLNGVGLKAVNALSETFTVRSVRKKKYHAATFCKGILQNSRQG
STKDPDGTEITFSPDPTIFTDFSFNDEFLRKKIRRYTYLHPGLEILCNDE
VFVSQQGLQDLFKEEITEETLYPPIAFQNSELSFLFTHLETHNERYFSFV
NGQETVDGGTHLAAFKEAIVKGINEYFGKTFTSNDIRDGLVGCIAIKIAS
PIFESQTKNKLGNTQIRSGIIKDVKSAIIQELKKNKSYADLLLDKIKLNE
KTRKNIQFIKQDLKDKQKKLHYKIPKLRDCKFHYNERSLYGEASSIFVTE
GESASASILSSRNPLTQAVFSLRGKPMNVFSLEEEKMYKNDELFYLASAL
GITKNNTQHLRYNKIILATDADVDGMHIRNLLITFFLKTFLPIVENHHLF
ILETPLFKVRYKDTTLYCYSDQEKVQAIQKLGKKEANLEITRFKGLGEIS
PKEFKTFIGADMRLTPVTIGSLESLETLLQFYMGKNTKERKQFIMDNLIT
NL
>CCA00135 conserved hypothetical protein TIGR00095
MKILAGKYKGKSLKIFSNPSVRPTCGVVKEAVFNICAAYIEDATFLDLFS
GVGSVGFEALSRGASSVTFVDSSAQSVRLIRANSQLLHPDLPVTIMKQEA
RSAIQRLTKKGMSFDLIYIDPPYNLENRYLAAVLSDIVFGKILDKEGLLF
LENASVEPILVEGLVLKRRRKLGGTFLSEYILDDSSCSL
>CCA00489 conserved hypothetical protein
MQKALRLLLNLHHGEERRALLFLVLGLIWGVGCYGSLALSEGLFLENVGT
EGLPSIYLGSSSILCLLSSLILYNLFKKRVSPKTLFLIPITSVIVCNLYL
LCYAATCSEIPPTPLLIYRMLSWSLIILAYTNFWGFVDQFFNLQDAKRHF
SVFNAIIFLGDAIGSGIVNRIQYIGVERILILFIVILFICYPLVHYVSKS
LKELSEDHDHFLDTGHPPSVSKAFKLCLKDSYTFYLLCFYFLMQLLAIAT
EFNYLKIFETHFTDGNTYELTAHITKWSSWISLTNMCFALFAYSRIVKNI
GVNNIILFAPLCFTNLFLCWSFKTSVGIATIGMVAREGLTYALDDNNLQL
LIYGVPNSIRNQIRITIECFIEPIGMFVWALMCFAISYQYTVCLIISVIT
VVLACLLRSYYARAILRNLSSQAIHLKKTMLEWIKAMTSKEKRQIELLLL
THLKHQQERHQIFAFQYLLNLGSRSVLPSLLAHMNKLSLPSKLKTMEMLK
NSLWARDFLTLELLKRWSSTTPHPSIAIGIHLYFAEHDLLRISDIAEDLY
DEPGDRLLAAILTVRRQEMSGQYRDVADSRLKELLSSKDHRVVAIGLTIL
TLERNPDNFPILVEFLDNTNNEIFVQACKALQASVKAIHRPYCKKLIQIL
KQNVHNDQACYYLLKIIGVILDASLVKDFVTTTALLKSASRKYAESIIVE
LPKETANSLLQILSDNSIHNRCRILAAKALCKIDNKLFKKNAYKIVKSKA
LKAIFYDYHKNYIQKSYPKYNLSLLVNTLESNYQSEVNFMFEFLGILGSV
EHSDILIRALTGKNKKAKAQALESLEKNCEDYLFSLLDPFINNTERRSEK
YYLKCGVIPLTLKELLNMMENSPSYLSKLTSRQLKEELASCDADFQPAPP
YSTLDEEYDHYNKDDSDSLVPFFTI
>CCA00966 conserved hypothetical protein
MSRLDFFVFDALVLKQKHNELEEIFCSENDDLFRAYQTTSLQSPLAAKNL
TIARNAARYILAENGEIDTTKVVKAIEHLTKCLYPLGPHRHNEAKPREHL
LKMLQTIKQEPEIKERIKKFFVPSYKSIQDLIRNTIALSPEITLTPIHAR
QAALTALFCYLRQDVGSCFATAFAIIIHQEYPKLFIKDIGDLLTSGKLTR
IIGTREICVPINLSGCIGELFKPLRILDLYPDPIAKLSASPGLQRAFAAA
GIVDTLDDPQVRVQQILAHEYLLNKLQHVDNILTANEVIQSTLLHHYQIT
ADSVCSILFQEGFYNKEQVFFSIEHSHKLSQTQRVYSYLTAYEQAKSAFI
SDTQNPLLKSWEYTLATLADANDSSTLNHIRVALGWRHDEPDSLAHIIQT
FVEEAVDNARELIQQCEQTYNEARAQLEYIESRMRNPLNEQDNKILLMDH
LRFRQELNKALYDWDTAQEKAKKLFALPNFLLSFYTKIIPQYFRSSYDAF
IQEFSHLYADSPAGFRILFTHGRSHPNTWSSIYSINEFISFLSEFFSSTE
GELLGKHGVLGLEKETSALIHRIISSLHKNSFQEAAITRILKGYNLPVPE
PVLNNLDKISHTPWVYVSGGTVEHLLKDYFENSEEVSSMEKHPETAHELA
AFFSDALKDQPSAVKSYLEDGSHSLLASSPTHVFSVTAGAPLFREAWNND
WYSYTWLRDVWVKNHQDFLADTVLNQQGIYTFIERFCSKYSLENLTYDFH
DFCSDHSLTLPELYEKASRFLQEALPSSKSIFPLYQRRLAHQIVQDIPYT
SDQQLPEVLDNVSSYLGISSRITYEKFSKLIEQFIPNFSLLSSEEIRHLF
KGLLMESYQQLYFEEDLFFRLATAMRHHNLAYPAPLLFGDSNWAYSYFGF
ILHPGTQEIDLWQFNYAGLQGYPLENTDKLLSVSRPWTLYANPIDYGMPP
PPGYRSRMPKGFF
>CCA00650 helicase, putative, RecD/TraA family
MEKISGKLEGILFEDQDSKETAARIRIPYKGTVIVIKGQFPNSFLQIGMQ
LHLYGKWSENPNLGKYFQVYSCDSLEGRDNRGVVNYLTSKLIKGIGPKIT
EKIIETFQGETTDILDNQPEKLIEVPGISQTRCDSLCEQLREQKDLRTTL
LFLQQYNIAIHYGVRIYKKYKEHSIEKICEDPFLLAREMEGIGFKTADLI
ATRLGVPLNSQSRLFAGIQHSLEELQEDGHTCYPLQRLAQAVEKLLNQDI
PDKLIQTEEIISQIYNMQEKNLLHIQELETVPHVWVKHVYLAEKTVVSDL
KRILFSSRRIRPIDGNKAIQWVEENLNLHLEQKQREAVHACFLEKIHIIT
GGPGTGKSTITKAILKIFEQVTYKIILAAPTGKAAKRMTEITGKHSVTIH
ALLQYDFKTRSFRKNYENPIDCDLIIVDESGMMDTYLLHHFLKALPDHVI
VILIGDVHQLPSIGPGNILKDIINSKKITVTKLNKIFRQVHDSNIIINAH
KVNEGEFPILYSESGRKDFLFFQKEDPQEAVDHIVQLVTQFIPKKYHIYP
KDIQILAPMKKGILGIHNLNKVLKSALNPKQATLHGKFHSYAIGDKVMQI
RNNYNKEVFNGDIGYISMINFENKRVVVNMEGKYVVYSFSELDDLVLAYA
TSVHKYQGSESPCIVLPIHTSHFMMLYRNLLYTAITRGKQLVILVGTKKA
IAIATRNDKVQHRCTGLEQALEQLTQPGQETISFS
>CCA00227 conserved hypothetical protein
MTTYPVPQNPLLLRALRLMDAFSKSDDERDFYLDRVEGFILYIDLDKDQE
DLDKIYEELEINAERYCLIPKLTFYEVKKIMETFINEKIYDIDTKEKFLE
ILQSKNAREQFLEFIYDHESELEKWQQFYVERSRIRIIEWLRNNKFHFVF
EEDLDFSKHILEQFKIHLFDTKVSKELSQARQLLVNKAKVYYSNEALNPR
PKRGRPPKQTAKVESETTISSDIYTKVPAVARRFLFLPEITSASSITFSE
KFDTEEEFLAHLRGSGRVEDQLNLANLSERFASLKELSAKLGYDSLSTGD
FFGDDDDKDDDEKPAPKSKAPAKRGRKKS
>CCA00351 conserved hypothetical protein
MSEPKPIYQSPALHQVEIGKSFLDRNPKIARTMQVTGIVLAVLAIVASVF
LITVMPLGLPISVALGGVLLGIGGSVLFTSVSHLAQNIKRAVVENKRRKL
LLQEKREGIKPRDDNLEILWSKYHHMVDKFAHLNMSIGKHERSILSHMGR
GEGAWFVENLNQITSDYLTCMSLLEGRRAVYDQEDYAQRDESYPSVARKN
ELLIRLGNNIVSKLSKGGGAFSLKMQRLSSTMSKVHTGITLGLVVGGIAA
VGVIAAVIPGGIFALPMIIAAAIGIGLAVLGLSYAIEAILERSKTNKKQL
LKDLKSTIDIQDLKDMTLDQTVLMNMLKVSLQADQQMTLDHKDFYEEYNR
IRDNLQSLNEHLEELEFKYKHINNEHKRRAKRLEKRLVTLSDKQNAQEGS
SAPQGPAAGQSDLWGDTAGFDELVTKGANAAQRRRENDRQGRSFLGDYGQ
HLDADQLEFASGWSPSGKRALEKMWSAKPGMTEEDYFILYEDVNKELTAC
RNDIQTLKAYIIYMQALFAEINAGRSRLEVYSEEIIGIWTDASNYCHRIL
NHLVGMQMRLIDCIESREIRPDVGNISPGQFPY
>CCA00677 serine/threonine-protein kinase
MQRYDIIRMIGKGGMGEVYLAYDPVCSRKVALKRIREDLSDNELLKKRFL
REAKIAADLVHPGVVPVFTICSDSDPVYYTMPYIEGYTLKSLLKSVWQCD
SLPKDLAEQTSVATFLSIFHKICSTVEYVHSRGILHRDLKPDNILLGLFS
EVVILDWGAALSKEMEEDFLSDIDVRIPGSLFSNMTIPGKIVGTPDYMAP
ERLRGTPASESTDIYALGVILYQMLTLSFPYRKKKGQKISLRHQISFPEE
IAPHREIPPFLSQVVMRALAADPRERYRSVSALKADIEQHLQGSPEWTPK
IVLHTQDRECWKFHEPILLSKYFPMLEVSPALWYSLAISKIESFSEVRLE
YTLLRKGLEEGFGILLPPSEGVDHGDFYHGYGFWLHIKENILSVSLVKNG
LEIQKTSRHIDGNKEKFFIAFEKQNHRLSLIIDNIVWTIHMDYLPARGGR
IGVIIQDVADVCGNIVVLESSGSLQVSCLAVPDAFLNEKLYERAITFYRR
IVESFPGRKEGYEAQFRIGIALLEKASENSDSEGFIQALEEFSTLHNSVA
APLEYLGKALVYQRLGEYNEEVKSLLLALKRYCQRPEISRVRDHVVYRLH
EALYSNHRISLVFMLLALHVAPESINASEEEHFLQNLHGKIQDTLFCNLD
ISPVDFRSSKMELLLSYWSGFTPFLLGLFQRSWDLKDYRALADIFYTAAD
LGNKEFIEEYSGILRENIRTTTFSKEIVEILPDQLLCFLSGLEALTLQES
IEKVFDGIENLDPVLILYLFDLFAKDALIHGRGEEILKAIALVEKYISPQ
QRYRYLLPYEVLSYLWMKDANKVYDLLSSYDESSWIDDSSHAFVLYGYWL
ALAEDSSLAYLHLSGCREDSVFPRALIGVFCSPLGICEEQLSYQERRQLL
LQKFIFFHCLGNSEERDKCRTAYDSKERSL
>CCAA00003 virulence plasmid integrase pGP8-D
MRKDNSLHKSLDTVFGNKVYQSNLSHQELLSIRNERIWEGLRDIQLSEAI
FIWLSSLNNHTARSYKGSVLALEKIGLISLNISLQEFALLNHNIILDSIK
QVPMKIIPWSEGTKQVRAACYISLTKFLNRATSGLISIAQPSHQESNKTF
YKIRDLVKTNAMNEVERVMFLKALEKINHRDWLIAQTILQGAKRVTEALS
VTVDKISFENGTISFDQSKSRGMSKTTIITYPQRFMRLMQNYVGNRLGLV
FITKTGKSVGLKQLAGTFAKAGVKARIPFKVTPHVLRATAVTEYKKMGCS
DSDIMKVTGHSSSKMIYAYDKSTTSENASKKVSLI
>CCA00753 conserved hypothetical protein
MGFEAMHVFNKHLYRKVYQGFRWETLLGRCRSFSIEWVFLSSIVLIFCGL
GCASIVDATLLLLTMCFSALALVASVYFRFWGYGVVSCLFLSVYYYKYIA
TYSSLLWALGLSTAFLLSWGIFVFGISLIDEENDEQKQKYDQLSNEYTEI
QVAYDKVVHDKAMACEFLEKRAQALESELQEYRALLQASCKKQEHMALDL
QILADQKNSWLEDYAVLHNEYVRLVAGDETTSVFSWVSGKETFSSNESKD
AELWLRTLREKDEKVSSLENKLIEEKLLRTTLEEECHSLKSHVQEVDQLR
VRLEECQNFLHQKDEEIAQLNALVNEQKAIVIETPAIDVELKSYKDKYLQ
LREQFAEKTETLAEVRKELFLVREEYLALQKQEEITSSFADMKDIEMIQN
LLAHIEGLEEEITSLEELVSHNLSQ
>CCA00316 site-specific recombinase, phage integrase family
MISAFYAFLDYLKNIKTASPHTLRNYCIDLNSFKSFLEKQGELSPSSPIC
LLTKERKETELPFSLFTKDSVRLYVLELMQENKAKRTIKRRLSAIKSFSQ
YCIKNRIIFEDPTETIHGPRLPKELPSPITYEQVEILMATPDLSKYTGFR
DRCLLELFYSSGLRISEIVAINHWDIDFNSNLIRIRGKGKKERLVPMTPH
AAQWLQQYLHHPERAHVEQDPQAFFLNRFGKRLTTRSIDRKFQKYLRQSG
LSGSITPHTIRHTIATHWLENGMDLKTIQALLGHSSLETTTIYTHVSMKL
KKQTHEESHPHS
>CCA00931 helicase, Snf2/Rad54 family
MVLNALAGFRQTAIDYLATNRQDIALDFSGDCYNIRIPDEDSPDGNWLST
LRFSDIDNLTFASCSCPDGDCCVHLMTAFFSAYDAHGWLPLHHKFDISFW
HALFLKLFLEEAQLHADGDRQYSITSPHITLEISALSSEAFTEWLPIIHQ
TPEPKTYTKKTFPQSVLYRVAKQFFFFSEAGARLDLIENSQGFPTQFAMQ
WEGISLKGEILDFSTLENLFPKINFSQTSLPGNYSDFSITKVRVAPEESK
IYFTVEPIAHDHANQPITEIGSIGYIAGSQQVILPSKETFVSIYLISLLP
ETLKKQILALLHYDSEERPIRYSIHFLRDSSISFSAYLDTPGDLENGKLI
YPDFCYVPEKGLFTVVGLLSPQISFVIKADQVEEFLNNEGMLIREPGFEV
FTDRIPEGQLTYNITQQGVLLFHYNTGNPAAIDIHYGPWTYYSGQGFFLQ
RKADLEIQDGLIVEADHIPNFIMKHEVVLRTIPNFFAPTPPLKNLFFEVH
KETKGSGLYLKPVFQGLEEENCRLFGVFLYRENLGFNLLPTPLQPLCSLP
RKIPAEQVPDFINQNSQNDKLVFTDPQLCPPVTFELVILSITRPHPSSPL
HLHLELKTNIGSIPLGIVLQALKNKKAFVFTKAGFLSFQHCLFQFLKQFI
SAQKCLIPENTVIATVTDIFKLDALAPLSTHEHISASASDLAFFSQLKAA
CLPPIPQSLFSTDHKLRPYQNSGLLWLWFLYNHRLSGLLCDEMGLGKTHQ
ATALLDIVFQSAEPTERPKFLIVCPTSVLPHWEHTLATHLPTVSIFAFHG
PNKPENLPPTDVIITSYGTLRQNYAKFYKVSFTVTVFDEIHMAKNKNSQI
HKILCRLDSQMKLGLTGTPIENNLLEFKGLLDIILPNYLPSDALFKKLFT
KKTPAEIDDEIIPSQDLLLKLTRPFILRRTKKLVLPELPEKVESIIPCTL
SPEQKKLYQSTLKREKAQIQQLESPEEQTVNYLHVFALLNHLKQICNHPA
IFFKNPDKYREHESGKWNAFVRLLHESLSSGYKVVVFSQYIHMIRIIMLY
LEEIGVKYASIQGKSLNRKEEIEYFTTDPECRVFVGSLLAAGTGINLTAG
NVVIMYDRWWNPAKENQALDRVHRIGQKNTVFIYKLMTEDTLEERIHYLI
EKKIRLLDKVISTQNSNILHMLNREDLITILSYKDERNGVDDTANIPNDE
ENSIF
>CCA00598 conserved hypothetical protein TIGR00250
MSNPKNKKEKTFLGIDYGQRRIGLAYAASPLFISLPIGCIEAGNTVEATA
KILFNIIQERSVSCVVLGNPIPMQKGQKSALQEEITKLSSLIQESCGVEV
ILWDERLSSAQAERMLKGDCGLSRKKRKGKTDTIAATLILTSFLESSPPK
IFLKKTCPKPPVR
>CCA00026 topoisomerase, subunit A, putative
MHNVSDLFKTHFMHYASYVILERAIPHILDGLKPVQRRLLWTLFRMDDGK
MHKVANIAGRTMALHPHGDAPIVEALVVLANKGYLIDMQGNFGNPLTGDP
HAAARYIEARLSPLAKEILFNTDLMSFHDSYDGREKEPDILPAKLPLLLL
HGVEGIAVGMTTKIFPHNLCELIAAQIAVLNNRAFTLLPDFYSGGVMDAS
EYQDGLGSITMRASIQIADQKTLIIKEICPSTTTETLIRSIENAAKRGVI
KIDSIQDFSTDQPHIEIKLPKGVYAKDILETLFQHTECQVVLTSKPTAIY
NNKPVETTISEILRLHTEVLEGYLQKELQILHDELSQEHYYKSLEYIFIK
HRLYDTVRENLSKLGNKVSQEDLHEAVLSSLSPFLASLPETPNKEATGQL
ASLAIKKILCFNESHYTKDLAKIEKKQAAVEKDLNNMKKFTIKYLKGLLA
KYGELGKRKTQVLSFSKQKKSVLKQQALV
>CCA00152 conserved hypothetical protein
MHTLTPAIALQNLPLGKNHCVTTIFSPLGLLTFFAKQGQSIYCDFREALI
PLSLGIYSLDYSPPKMRKLICAEVKNPFSEIKSSLSLLQAAGKMAQSILE
SQWQEKPSQELFSLFLNFLHRLPESKNPEMFAAAFLLKLLQYEGILDLSS
TCAHCKKTISSPNFYRYQGRKFCLEHRPENAVMIENEEEQILCALIHAKR
FQDLLHLSNFHLEFSEKITLIFESTIHEGKNKKLP
>CCA00156 hypothetical protein
MASSSTPNSLASSLNPESTQSRLSLFSDLTPLERGEVSSVWKTRCQLASC
IGLFCLSLLTICAGALVLTLLPATPVIIGVAFIALGSVLLVTSLLLHFAT
RPNKKTAMQKVNIQDLQAQLQALLATTDARGLAINGFDPNGDPQLIIQGR
ENLLARFDRDLRKKEVDLYRLISSEAENRHCALSDLSEFREMQERVSEEL
ELLYRSYNQHIAGTRDTGDDERLTRLYHERDLLIQELVGVGIEKSNQTEA
VRNLQTTLNTLVQRIRLLENQIANEAGTRQRHEGLVAGLQPLLQEQNSLL
SRLSQSYEALIALSIRDESLTNQRIDLEKEIQSLMESTSERLLLNREYRD
KYLRSAGAINQLTNSLREKEARLLGLTQELEGLTDEVERLRNRQPVGEYS
QEDIDFQRNAIEVKDAAIEQLREQLASYRRLIDEAVAVNSQIAKRTEESE
IRALHIAALEQREKVLGTKIHALQGDIDRYAAEQQRLRLENEELRELVLT
AESNPGSNAQIEALQREIQRITADLNVVVRERIDISDSLSLARTQLTESQ
LRYASLREEVLAKDEEIAGLEIEMSRLRADIRIYDSDIAHLQNSLQGGSE
LRGTINALRDEIKRLEKEKLDLNTRMLAAVEQNRVNVDLLQQSEKEKERL
LQEVQALRMRYDQEKAALQDQVAQLQQTMHDRYLEHIETTSRLKLENEQL
EKLLKDANRMARYSEEGAMQMLAAQLITLSSNIKQRKKTEVQRLEFSEML
AFTAPRFFGNVGMNISCRWLRPGIYLEAELPASATDAQKRGVIEQRCLRE
WFLALLGSFTIQQVEAIAQRANALVAESGEQQPALDELFNDLAEEFPEIR
ASSGTLTEWLSTCYSYVTDLPMFNDYAHWTSFLFSMLRKMHRDAGGLLEN
LSEEENKFLSMVSCFYGKIPLVLGSIGHGLGTTPGAANPLGDCNYENLGN
VSWNRLIRVVEQVLAVRSGLNGPQLLEMRDISEGMQRSDALAQRYSRTTW
TPPRDL
>CCAA00002 virulence plasmid integrase pGP7-D
MSGLSHYHKSRLFLTILEAANVWLATLSPITRKNYASGIKFLVSNNILDG
SMKLESLICFDHCDVLNKIKSLTYTYTGKTVSEASKQARAACYISFTKFL
YRLTKGVVKQACPSRDFGNSTFYKIRDKVKTEFISKKEWLLFFDSLKRIS
FRDYLIGKLIIQGVRKLSEVISLRTEDLSFAQNQVTFKVKKRQNRYQEVK
VSYPNFLMQELRSYLGNREGWVFISREGEQVAINQVYYYFKLAESDINSP
IKVTPHVLRASALAYLKKMGFADQEIMRISCLSSTQMLSAYDTGMTDNLT
SQLPLIF
>CCAA00004 virulence plasmid replicative DNA helicase pGP1-D
MIKQSEEERELLDVEFFVLGQAVNYLEHAHTIVRRLSENHFKSENHKNLF
ILIRDILRDRDTISISLIWEEIKRRNLDKRMDVSYLIHMSQNADIPIDLD
HHIDFLHEKHVNNLLKEFLDSSFQDFTRYPNRRSPFTLIDQFKERLDDIH
KKTSYPRRKNIGKTVYDIFASGDDGKNSVISQIRHRYDYRSRHQIDYVDG
LSTGYSSIDENSIILSKGNFVVVAARPAMGKTAFAIDIALNLVLEQEKAV
GFISLEMSPNQIVERVVSNLSEISCEQLKRGNFSRDVLSKIENIGMRLKG
THFFICDNKSTDLNTLIDQARELRENQGIDALFIDYLQLIGSNKKAENRQ
NEIAEISRQLRKLAGELQIPIVCLSQLSRKVEDRGDKRPMLSDLRDSGQI
EQDADVILFLHRKDYYSQEATKGLSEIIIGKNRHGSVFSTNLRFNSSTGK
FSVQKEAW
>CCA00800 hypothetical protein
MQVIYFIMGFFMKCMQTNLSSGLEGQVASTNVDRTYSYSAINALAIVSGI
LIITASVAGCIFIGADLGLLSAILLGFTIISGLILIALGTYFCCQGNAFE
AVVSQRVLVEQARSAELTTQLAVAQQELVDLRAQQLEDQEHRVPDREGLV
SEEQATLLQARNQRIIDLESIIKLLRKEHAELLEEQDRKCYAEIIRQTSL
RNQLQNNHQKEMESKEKSVRERMEFLQNEMSQHVTSHADELTTIRQTLLQ
NQEIFNQNIREQEQQISVLRDSVSQQHAVDLDRIHELETLLEDKEEVISA
LQRDVESYENVELHHSIDSLPHALARIRQQEARITLLEVINLQLTPRTRN
RSSSI
>CCA00239 DNA-3-methyladenine glycosylase
MLPESFFLHDDVLHLAKELLGHILITKISGKITSGFIVETEAYRGPDDKA
CHAYNYRKTKRNSPMYSRGGIAYIYRCYGMHSLFNVVTAKQDLPHAVLIR
AILPYEGEDIMIQRRQWQNKPKHLLTNGPGKVCQALNLTLEHNTHALTSP
HLHISKEKASGRITQTPRIGIDYAEECKDLPWRFLLNIKD
>CCA00036 conserved hypothetical protein
MPKYPLEPVLTIKKDRVDRAEKVVKEKRRLLEIEQEKLREIEAARDKVKN
HYMQKIQQLRELLDEGTTSDAVLQRKAYIKVVAVQLAEEEEKVNKQKESV
LAASKELEKAEVNLAKRRKEEEKTRLHKEEWMKEALKEEAREVEKEQDEM
GQLLHQLRKNKQRESGESSSWN
>CCA00509 DNA polymerase III, tau subunit, putative
MQIEEKVDNDPWEALLDNINQGKVSHAILLHGNALSLLSQYAYDLAAHIL
IKDTPEAQYKITQRVHPDIHEFFPSGKGRLHPIEIPRDIKKQIGVLPYEG
CYKIYIIHEVDRMTLPAISVFLKVLEDAPAHSVILLTSAKLQRIPATILS
RSLSIYIQGKENVAPNEEDIEYLLNYASGKMKITEVGQIVKGNADTDKQV
LRDKAKVLLEILLKLFRDRFMLSLNIPASALAYPKYAKDILNLPILPLEK
VLIIIEKAHQALDNSSSATSCMEWVALQLVSLNNRLAR
>CCA00413 conserved hypothetical protein
MQEHTCFQDFSKFYKEKAPALTVIGSNSEEDKSVCMELLVSGKTQEFDAS
GLTISDLSKWTESYGLFASKEVISIFQAEKLSQQTRDFLIRYARNPRPHL
IVFLFTTKQSCFQSLRKELSSAAFLSLFGEWQSDREKRMTVLLSQRAALL
GVTCSLALASAFIKKFPLGEMHNLIGEFHKLLCCIGKKQALEYSDIESFV
VKKEQVSLWKLRDAILQRNTAESQALLRALLLEHGEDPLGLIAFLRGQCL
YGLRSLEKETADRKHRFFIAYGKERLHQALSHLFYAESIIKNNVQDSIIA
VETLLIRMTNS
>CCA00852 mutT/Nudix family protein
MMKTKYEYSFGIIPIKFFGTPDRSTLKACFICHTQGKHWGFPKGHSEDKE
GPQEAAERELVEETGLSVVDFFPKVLVEHYSFNDNEVFVRKEVTYFLAEV
QGDVHADPEEICDTQWLSIQEGMRLLNFPELKEIAGEADKFINSYLFSS
>CCA00970 deoxyribonuclease, TatD family
MDLVDAHVHLSDEAFMEDGDEVICRAKDSGISLLVNVTTTIDELNKSFDY
AERFPELRFCHVAGTPPQDAHTDIDEHFQYFQGFAQAGKLAAVGEVGLDY
CFGEDDAAKERQKKVLKKYLSLALECELPLVVHCRGAFDDFFHMLDQYYH
HDERSCPGMLHCFTGSLEEAQELISRGWYLSISGIVTFKNAQDLRSVVSQ
IPLDHLLIETDAPFLAPTPYRGKKNEPAYITHTIQAIAAIHGIDSQELAG
IARSNVLRFLEGRKKG
>CCA00618 protein kinase, putative
MEGEQDIGVEFLGDYKILCYLRKGLWCQDILAEHRFIKKRYILKLLCSEL
SSSEAFMTAFHEAIIKLATIRHPGIISIENVSQAEGQYFLVTEEKEVPTL
SLAQYLSSCSQGLSELEAKDLICQLAEILDYAHANRLIHGGLSLDSVHID
LTGQSPKVFLPELGFSFLLKDQYTQSLLRDSSEKSSFDKLKQILLFQAPE
TALGTVAEDVYAFGVIVYFLLFRQLPQGAFPLPSEAFPEYVYDWDRLIQS
CLSYAVEKRPKKLAPLLVKKTLGEQFLAAKIQCSEEDLREIEEEPQVPSV
ANILQKVEDKIIEETSDHLEFVLVEAKSIDEAMNTSVDSKEEVVAEDESY
SNALQSLLIREPVVSRYVEEEKEEVKPQPLFTEMVFIEGGKFLRGSREGQ
RDEHPVHEIFLHSFFLDIHPVTNEQFVRYLECSGSEQDKYYNELIRLKDS
RIQRRSGKLVIEPGYAKHPVVGVTWYGASGYASWVGKRLPTEAEWEIASC
GGVTQLRYPCGEEIDKSQANFFSSDTTPVMSYPANPYGLYDMAGNVYEWC
EDWYGYDFYEISAQESHAPQGPAQGVYRVLRGGCWKSLKDDLRCAHRHRN
NPGAVNSTYGFRCAKGVK
>CCA00145 ada, DNA methyltransferase
MSENLYLVSDDSKLSLSQACSQGLQIAKHPPLQVIVHFQNNTVVKTQLSV
APVFCCLFLGPASHKAMEEIVLLCAKYSQKLDIPRSSYINTSILSEQQKT
ILDCVAKIPFGQTRTYGEIARETDTHPRTVGSACKNNPFLLFFPCHRVIG
SNGERHYCAGEQIQNILLNFEGSLS
>CCA00368 dnaA-1, chromosomal replication initiator protein DnaA
MLTCSDCSTWEQFVNYVKTRCSKTAFENWISPIQIIEETQEKIRLEVPNI
FVQNYLLDNYKQDLCSFVPLDAQGEPALEFVVAEIKKAPAQPIAPREPQE
SPAETFEESKDFELKLNAAYRFDNFIEGPSNQFVKSAAVGIAGRPGRSYN
PLFIHGGVGLGKTHLLHAVGHYVREHHKNLRVHCITTEAFINDLVQHLRL
KSIDKMKNFYRSLDLLLVDDIQFLQNRQNFEEEFCNTFETLINLNKQIVI
TSDKPPGQLKLSERIIARMEWGLVAHVGIPDLETRVAILQHKAEQKGLHI
PNEIAFYIADHIYGNVRQLEGAINKLTAYCRLFGKTLTESIVRDTLRELF
RSPSKQKVSVESILKSVATVFQVKLQDLKGTSRSKELVLARQVAMYLAKT
LITDSLVAIGSAFGKTHSTVLYACKTIEQKIEKDETLTRQISLCKNHIVG
>CCA00473 dnaA-2, chromosomal replication initiator protein DnaA
MRAWEDFLLLQEKEIGTSTVDKWLRSLKVLCFDACNLYLEAKDSFQVTWF
EEHIRHKVKTSLVNNNGKLIRVHITSLDKTAPFYKEKQIQQEKTAYFTMQ
YGNVNPEMTFGNFLVTPENDLPFRILQEFTKPAEDTAGFPFNPIYLFGPE
GSGKTHLMQAAVNALREFGGKILYVASDLFTEHLVSAIRSGEMQRFRSFY
RNVDALFIEDIEVFSGKGATQEEFFHTFNSLQTEGKLIVISSAYAPADLK
AMEERLISRFEWGVAVPIHPLTKEGLRSFLMHQAEQLSVRIEDTALDFLI
HALSSNVKTLIDALKLLSKRVAYKKLAQQLLYEDDIQTLLHDVLEVAESV
RLTPSGIVRAVAKYYGVSPESILGRSQSREYVLPRQVSMYLCRQKLSLSY
VRIGDVFSRDHSTVISSIRAISQKVEEGGDDISIATQELMKSLTSAYKSL
EFFPEEEISC
>CCA00124 dnaB, replicative DNA helicase
MSTQTEKASAPTLPSPPSSKESEMIVLGCMLTGVNYLNLAANQLNEDDFY
YLEHKIIFRVLQDAFKHDKPIDVHLAGEELKRRNHLTVIGGPGYLITLAD
FAGTAAYIEEYIQIILSKSILRKMIQTAKEIEKKATEEPKDVAVALDEAQ
NALFKISQTTALTQYVLVADKLQGLTSAQEKPFLIQLQEKQEFFHQHAQS
GDALPISGIPTHFIDLDKMINGFSPSNLMILAARPAMGKTALALNIAENM
CFQSRLPIGIFSLEMTVDQLIHRIICSRSEVESRKINVGDLSGQDFQRIV
AVVNEMQQHTLLIDDQPGLKVTDLRARARRMKESYDIQFLIIDYLQLLSG
SGTLRSAESRQTEISEISRMLKTLARELNIPILCLSQLSRKVEDRANHRP
MMSDLRESGSIEQDSDLVMFLLRREYYDPNDKPGTAELIVAKNRHGSIGS
VPLVFEKELARFRNYAAFELNG
>CCA00073 dnaE, DNA polymerase III, alpha subunit
MTWIPLHCHSQYSILDATSSIKSFVAKAKEYQIPSLALTDHGNLYGAIEF
YKECRQNDIKPIIGCEIYVAPTSRFDKKKERKSRVANHLILLCKNEQGYR
NLCLLSSLAFTEGFYYFPRIDRELLSQHSEGLVCLSACLSGSVAQAALES
EEALEKDLLWYQNLFGDDFYSEIQLHKMSEEKIASLGEEWLKHEYHQFIE
AQIKVNQAVLATSRRLGIRSVATNDIHYIHPNDWLAHEILLNVQIGETIR
IAKQNTYIPNPKRKAFRSREYYFKSPEEMALLFADHPETISNTLEVADKC
NLSLNLSSKHYPIYVPEFLKEKQTYTEEERYAASSTFLRELCEQGLFTKY
TAEQLAHISKKFPDRDPLELVKERLEMEMSIIIPKGMCDYLLIVWDIIRW
AKDNGIPVGPGRGSGAGSVMLFLLGITEIEPIRFDLFFERFINPERLSYP
DIDIDICMAGRERVINYAIERHGKDNVAQIITFGTMKAKMAVKDVGRTLD
VPLSKVNHIAKHIPEMNTTLAKALETDPHLNELYTNDSEAAQVLDMAMHL
EGSIRNTGVHAAGVIICGDHLTNHIPICISKDSTMITTQFSMKPVESVGM
LKVDFLGLKTLTSIHIAIQAIQKKTGKLLEMASLPLDDKTTFALLHQGKT
MGIFQMESKGMQELAKNLCPDSFEEIIAIGALYRPGPMDMIPSFISRKHG
KEIIEYDHPLMESILKETYGIMVYQEQVMQIAGSLASYSLGEGDVLRRAM
GKKDIQQMLQERTKFCERACKNGIDADLATTIFDKMEKFASYGFNKSHAA
AYGLITYTTAYLKANYPKEWLAALLTCDSDDIEKVGKLIHEAHSMDICIL
PPDINESGTNFVATDKGIRFAMGAIRGIGKGLVESIVEEREKHGPYQSIQ
DFIQRSDLKKVTKKHTENLIDAGCFDVFESDRDVAQATLETLYDTISKEK
KEAATGVMTFFSLNTMHQEHRVALPPATNVVRRSKKEILKKEKELLGIYL
TEHPMDAVKDILPQLSVVNSGEFENLPHGSVIRTIFIIDKVTTRISSKGQ
RKFALLRVNDGVDSYELPIWPEMYTEQQDLLEEDRLIYAILSIDKRSESL
RLSCRWMRDLSLINQELIQECDDMFDKIKGQMQKMSYLNLETNKDTNQRK
TSTMSKATDNRSQASIVKLSLDLGQLRHSHLCVLKQIIRKYPGPRTLSLV
FTKDNERIASISPDTDYFVSNDTSDLQKDLENSQLPVRFIAV
>CCA00828 dnaG, DNA primase
MYTEESLDNLRHSIDIIEVLSEHLHLKRSGATYKACCPFHVEKTPSFIIN
PTGAYYHCFGCGAHGDAISFLMNHLGYSFSEAVLTLSKKFHVDLIVKIKD
TQSPFSTGAKDELRQINSEAEKLFRFCLYQLAEGREALQYLYRRGFSPDT
IDRFHLGYAPEQTLFIQAMREKDISEKQLEDAGFIGNKWFLFSRRIIFPV
HDALGHTIGFSSRKFLENTRGSKYVNTPETIIFKKSRALFGLHLSRRRIA
KEKRVILVEGQADCLQMIDSGFNCTLAAQGTSFTEDHVKELSKLGVLKAY
LLFDGDDAGVKAAIRVGDMCQTAGIAVMVCRLPKGEDPDSFLMHKGARLL
GELLDQSEDYLTFLVSEKIRVYPNFSPREKALVIEETITQIKKWGNLIVV
YEHLKQLASLMMIPESMVFSLAKLESGITPSKAPVANKEKLPKIHSDVII
ETDILRCMLFCKPHNISIPHTAKNYFTAMDFKHPECRKLFSHLIEYYEKH
HSNLPFDKALSLLEDKIIIELLIKRRINTDCLENVFVQSLQKLADRQWRE
HRHPLASQSKSPQGQKLSILEDYVRLRKDRVIVTLLDPQEC
>CCA00445 dnaN, DNA polymerase III, beta chain
MKFVVSRNEVGNLIKKIQSVVPQNTPIPVLTHVLIETCNDELVFTATDLT
VSTRCVAQAKVYESGAISIPSKRFFQLVKELTEANLEISATTGEMAKITS
GSSCFRLLSMGKEDFPMLPDIQNAIRFTLPAEQLREMLQRTSFAVSREES
RYVLTGVLLTIANGIVTVVGTDGKRLAKTDTEISLDKSFIGDYIVPIKAV
EEIIKLCSEDSEATIFLDQAKIAVECGNTLLITKLLSGEFPDFSPVISTE
SSVQLDLHREELITLLKQVALFTNESSHSVKFTFTPGELTLTANCTKVGE
GKVSMAVNYSGELLEIAFNPFFFLDILKHSKDELVRLGISDSYNPGIITD
STRSLFVIMPMRLHDD
>CCA00085 dnaQ-1, DNA polymerase III, epsilon chain
MTLLKDTIFVCLDCEMTGLDVKKDRIIEFAAMRFTFDKVIDSMETLINPD
RVISAESQRIHRISDAMLKDQPRIAEVFPKIKSFLKEGDYIVGHSVGFDL
QVLTQEAERIGESFLSKYYIIDTLRLAKEYGDSPNNSLEALAVHFNVPYD
GNHRAMKDVEININIFKHFCKRFRTIEQLKQMLSKPIKMKYMPLGKHKGR
CFSEIPLSYLQWASKMDFDADLLFSIRHEIKHRQKGTGFTQVNNPFIGL
>CCA00384 dnaQ-2, DNA polymerase III, epsilon chain
MTALIFYDTETTGTQIDKDRIIEIAAYNNVTKQSFVTYVNPEIPIPEEAS
KIHGITTSTVSSAPKFPEAYKQFCDFCGNEAILVAHNNDSFDFPLLEKEC
RRHSLEPLSLRTIDSLKWAQKYRPDLPKHNLQYLRQVYGFAENQAHRALD
DVITLYNVFSALIGDLSAEQVLALMEESQHPKAFKMPFGKYRGKPLTEVP
ASYIQWLENQGNLDKDMKAAIDLMKQMT
>CCA00331 dnaZ, DNA polymerase III, gamma subunit
MTSTTYQVSSRKYRPQTFSEILGQDAVVTVLKNALQFQRVAHAYLFSGIR
GTGKTTLARIFAKALNCPERTSDHEPCNHCCICKEISSGTSLDVIEIDGA
SHRGIEDIRQINETVLFTPAKSQYKIYIIDEVHMLTKEAFNSLLKTLEEP
PSHVKFFLATTENYKIPGTILSRCQKMYLKRIPETMIVEKLASISKENSI
ETSSEALLPIARAAQGSLRDAESLYDYVTGLFPKSLSPESVADALGLLSQ
DTLYTLAECIRTQKYAEALLPVTTAINSGVAPITFLHDLTVFYRDLLLNK
DQGHSPLSATAVHYSSECLLEIIDFLGEAAKHLQQTIFEKTFLETVIIHL
IRICQRPSLETLFSQLKTSTFDTPRSIPQQQEPPKPIIQPEKHYEEQSFL
SLSAKSPTVKEALHQKETSPSLVGSATIDTLLQFAVVEFSGILTKE
>CCA00507 gyrA, DNA gyrase, subunit A
MFNKEEIIVPKNLEEEMKESYLRYSMSVIISRALPDVRDGLKPSQRRILY
AMKQLNLTPGAKHRKCAKICGDTSGDYHPHGESVIYPTLVRMAQNWAMRY
PLVDGQGNFGSIDGDPAAAMRYTEARLTHSAIFLMEDLDKDTVDMVSNYD
ETKHEPVVFPSKFPNLLCNGSSGIAVGMATNIPPHNLGELIEATLLVLSN
PNASIEEILEVMPGPDFPTGGIICGGEGIRSTYHTGRGKIKVRARLHVEE
NADKHRENIILTEMPYNVNKSRLIEQIADLVNDKTLAGISDVRDESDKDG
IRVVLELKKGESSEIVINRLYKFTDIQVTFGANMLALDKNLPRTMNIHRM
ISAWIRHRTEVIRRRTRYELNKAEARAHILEGFLKALSCLDEVVRTIRNS
DSKEHAKHQLVENFGFTEQQSVAILELRLYQLTGLEAEKIQKEYDELLNK
IAYYKRVLADEGLVKDIIRNELQDIQRVHKTPRRTRIEFDADDIRDIEDI
ITNEPVIITISGDDYVKRMPIKVFREQKRGGHGVSGFDMKKGSDFLKAVY
SASTKDYLLIFTNFGQCYWLKVWQLPEGERRAKGKPIINFLEGIRPGEQL
AAVLNVKNFENAGFLFLATKHGVVKKVALEAFSNPRKKGIRALEIDDGDE
LIAAAHITSEEEKVMLFTRLGMAVRFPHDKVRPMGRTARGVRGVSLKNEN
DRVVACQIVKDDQSVLVVCDNGFGKRSQVGDFRETNRGGVGVRSILINER
NGDVLGAISVTDNDSILLMSAQGQAIRINMQDVRVMGRSTQGVRLVHVKD
GDILVAMEKLSLNEDETLADIEQESPSPQV
>CCA00506 gyrB, DNA gyrase, subunit B
MDAKEKSYDASAITVLEGLQAVRERPGMYIGDTGITGLHHLVYEVVDNSI
DEAMAGYCSEIYVRILEDGGITISDNGRGIPIQIHEKESKKQGRDVSALE
VVLTVLHAGGKFDKDSYKVSGGLHGVGVSCVNALAEKLVATVYKDKQAYQ
MEFSRGVPVTALQPLGVTDKQGTEITFYPDNKIFSSCVFDRSILIKRLRE
LAFLNRGITIVFEDDRDVSFDKVVFFYEGGIQSFVSYLNQNKESLFPEPI
YISGIRTGDDGDIEFEAALQWNSGYSELIYSYANNIPTRQGGTHLTGFST
ALTRVLNAYIKAHNLAKNDKLSLTGEDIREGLTAVVSVKVPNPQFEGQTK
QKLGNSDVGSVSQQITGEALTTFFEENPQIAKMIVEKVFIAAQAREAAKK
ARELTLRKSALDSARLPGKLIDCLEKDPEKCEMYIVEGDSAGGSAKQGRD
RRFQAILPIRGKILNVEKARLQKIFQNQEIGTIIAALGCGIGSDNFNLSK
LRYRRIIIMTDADVDGSHIRTLLLTFFYRHMTALIENECVYIAQPPLYKV
SKKKDFRYILSEKEMDDYLLTLGVGDSKLVFKNGGREISGEALDSFVKLI
LNVESFIVALEKKAIPFSEFLEMRSETSGYPLYYCPPKSGKQGGRYFHST
EEKDKEVLSSEDPDSVKVVELYKTAVFAEIQEELRDYGLDIRHYLNPKDS
EMVITNEDSKTLPYTCYTLKEVIDHLKALGRKGIEIQRYKGLGEMNADQL
WDTTMNPEQRTLVRVSLKDAVEADHIFTMLMGEEVPPRREFIENHALSVK
MNNLDI
>CCA00918 helZ, helicase, Snf2 family
MLNFRKLRRDFTANILQDGKELFDQGAVINAKILSMNGESVCIGAQVRGL
YDNVYECEIEVDRSKSDTIDSNCDCSYNYDCQHIVALLFYLEKYFNEMVV
AYSQEADLETNQEINEEVKKELQETFVAAASREEERKDRAHQKEILSEYV
HAANALSANPFFLPQEYLEKNSAELAVLFVASNDEVFRPNQHVEFQLVLR
LPGRSKPFYISNIKTFLEGVLYQEPIILNGRRFFFTMQSFNVSDRKLIDL
LIRYVRYANQAPEEKLLKSAYLTLTSLGVILAKMYEHQMADRGGGQVGEK
ESFSGMFCGNLEEPLYWSASAAKMKFDLDFFDTPYKALLMTPLILVDDET
LQPEQAILLESNVPGIIHNNVYHHFAPQIRRAHLRSFLRLRDITIPEALF
GSFRENALPVFKEYAEVSNVEVLNPFVTLPYVEDIRGVCNISYLDGELEA
KLHFIYDSLTIPAASFALKYQDVHAFIRDDGILARNLVEERKITEEVFSG
FIYDERDGAFHVKSEKKIVEFMTETIPNNQHRITFNCPETLSDQFIYDET
VFDLSFKESSEVNTYEAELKVNGLLKGISLDLLWDCISAKKRFLELPKKG
RNVKTPRRGRASSTTKLPCILVLDLEKISPVVQIFNEIGFKVLDNFVEKC
PLWSLTGISPEIFKGLPVNFTMTDKLAEIQKQIRGEVAFDFQAVPEQIQA
TLRSYQTEGIHWLERLRKMHLNGILADDMGLGKTLQAIIAITQSRLEKGK
GCSLIVCPTSLVYNWKEEFRKFNPEFKTMIVDGIPSHRRRQLAALSEYDV
AITSYNLLQKDIDTYKDFVFDYVVLDEAHHIKNRTTRNAKSVKMIRSGHR
LILTGTPIENSLEELWSLFDFLMPGLLSSYDRFVGKYIRTGNYMGNKTDN
MVALKKKVAPFILRRMKEDVLEDLPPVSEILYHCHLTDSQKELYHSYAAS
AKKELSRLVKQEGFDRIHIHVLATLTRLKQICCHPAIFAKDVPEPGDSAK
YDLLMDLLSSLVETGHKTVLFSQYTKMLSIIKKDLEARGVRFVYLDGSTK
NRLELVNQFNEDPGLLVFLISLKAGGTGLNLVGADTVIHYDMWWNPAVEN
QATDRVHRIGQNRSVSSYKLVTLNTIEEKILSLQNRKKSLVKKVINSDDE
VVSKLTWEEVLELLQI
>CCA00550 incA, inclusion membrane protein A
MTVSTDNTSPVISRASSPTFGDHGKDFDNNKIIPISIEAPTSSAAAVGAK
TAIEPEGRSPLLQRICYLVKIIAAIALFVVGIAALVCLYLGSVISTPSLI
LMLAIMLVSFVIVITAIRDGTPSQVVRHMKQQIQQFGEENTRLHTAVENL
KAVNVELSEQINQLKQLHTRLSDFGDRLEANTGDFTALIADFQLSLEEFK
SVGTKVETMLSPFEKLAQSLKETFSQEAVQAMMSSVTELRTNLNALKELI
TENKTVIEQLKADAQLREEQVRFLEKRKQELEEACSTLSHSIATLQESTT
LLKDSTTNLHAVESRLIGVMVQDGAESSTVEEASQDDSAQPQDENQSDAG
EHKDS
>CCA00617 ligA, DNA ligase
MESMYSREQYLSLCKELEKDDYCYYVLHNAVISDYDYDMKMQKLLAIEAQ
HPEWKVLWSPSMRLGDRVSGNFPVVAHSHPMLSIANAYTLEELNDFFSRV
EKTLGYAPIYTLELKIDGIAVAIRYEQGILVQALSRGNGQKGEDITANIR
TIRSLPLRLPKDAPEFLEVRGEVFFKRETFEQINAAQRQAEKPEFANPRN
AAGGTLKLLSAKEAAQRNLELSVYGSLSDENTESHYDNLMLCKRWGFPIF
GQPRQCQTIAEVVKSLDEIEGLRDQLPMEIDGVVIKVDDVEAQKALGMTA
KHYRWALAYKYAPERAETILENILIQVGRTGVLTPVAKLSPVFLSGSRVS
RASLYNEEEIERKDIRIGDTVYVEKGGEIIPKVVGVCLEKRPEGTQPWVM
PEFCPVCHGKVTRESDKVSVRCTNPLCSAGAIEKIRFFVGRGALDIDHLG
EKVITKLFDLGVIHRCCDIFKITEEDLLQVPGFKDKSVKNVLKSIEKAKQ
APLDRFIAALGIPYVGVRVASALAQHFLNLEAVMGASLEELKSIEGIGDK
VAESIEAYFNQQDTIEEIQKMLSLGVNVLPYHRESSSCLGKTFVITGTLK
KMTRSEAEASIRNCGGKVGSSVSKSTDYLVVGEDPGSKFKKAQELEIPIL
NENDLLKILYPN
>CCA00877 mfd, transcription-repair coupling factor
MAMDFDPVNLNLPILSEITNASIPLLIENIRPGARGFLAAKFFRERDESV
VMITTRARIDDLFEDLSSFLGCAPVEFPSSEIDLSPKLVNIDAVGKRDKV
LYELYEKKAPLFCITTLKALLEKTRSPKDTGHQHLDLQVGDVLDPEMMID
LCKNLGYRHETLASDKGEFAYRGGIIDIFPLSSQEPFRIEFWGEKIISIR
PFNPSDQLSTGKVSKISISPATKDSGKEALSHCLLDYFKTPPVFIFDNLS
MLEDDFSEISGTLSSLPNRFLSITDLCERALQSPTIFFEEKSFPNVRNLK
NNEVNIEVFHRDVKASRLVVPFVYPNETIDDQENPLLGFLQKLQEYVPHK
GQPFNVALYNTKAKSLKEARALVETLSGNSIHIYEKPGNLSTSFALVEER
FAAISLAEFSATKVLRRQKQRNYFSVTTEEVFVPIPGETVVHLHNGIGKF
IGIEKKPNHLNIETDYLVLEYADKARLYVPSDQAYLISRYVGASDKAPDL
HNLNGSKWRRSRDLSEKSLVLYAEKLLQLEAQRSTIPSFIYPPHGEEVIK
FAENFPYEETPDQLKAIEQIYSDMMSDKLMDRLICGDAGFGKTEVIMRAA
VKAVCDGHRQVIVMVPTTILANQHYETFSQRMAGLPINIAVLSRFSERKS
MKKIFEDTAKGDIDILIGTHKLINKNLEFKNPGLLIIDEEQRFGVKVKDF
LKERYPKVDCLTVSATPIPRTLYMSLSGARDLSLITMPPLDRLPVSTFVL
EHNEETLSAALRHELLRGGQAYVIHNRIESIFRLGNTIRTLIPEARIAVA
HGQMSPDELASIFQKFKDQEINILVATALIENGIDIPNANTILVDQADKF
GMADLYQMKGRVGRWNRKAYCYFLVSHLDRLSGPAAKRLEALNKQEYGGG
MKIALHDLEIRGAGNILGTDQSGHISAIGFNLYCKLLKKTVAALKNNTTP
LLFNDDVKIEFPYKSRIPDTYIDLASIRIEFYQKIGGAEDAEQLELIKEE
MRDRFGPLPEEVLWLFALAQVRLFALHHNISSIKGTGNALYIQQCHGKTE
QIKKTLPYSLSPTPELLISEVLASIEKAFPLKTPR
>CCA00951 mutL, DNA mismatch repair protein mutL
MSSRNPIQLLDTITINQIAAGEVIENSISVVKELVENALDAGADEIEVET
LGGGQGLIVVKDNGCGMSSEDVALALKRHATSKIGEFSDVFSLSSFGFRG
EALPAIASISKMEILSCPRAGEGSRTIIHGGEIVTSEAKPRQVGTTISID
SLFYNVPVRRGFQKSPQTDRMAMRKLLENRILSVENVGWSWVSERQQEFH
IFKHQGFAERVAFVMGEGFMQEALRVDKGGNLVRVVGFLGSPGFHRPTRL
GQRVFINDRPVDSTFISKKISEAYSMLLPPQRYPVFVLKLYLPPEWCDFN
VHPQKTEVRILREEFVGEFLSETIGEVLARPQEVSVFETASTLPALRFFD
EQLPESALEGLQGSNVLPVVKLTPSSSGSLPFLDREPDPLPVDRQTQISW
GASQEVRFLTSLGKIVLAEDSEGVHAIFTESARKHLFYLSLVENHQHNYK
SQSFLVPLCLEVTPQERIFLSSHIEEFKLLGIEISQMGPCVFSIESAPTF
IGEEELKLWILSLAAESAKVDKRAMTLLIKEALTQTIFCKTLRAFDISWL
SLLWQLGKPEKAFDGSQIRRLVLDEDFIKE
>CCA00829 mutS, DNA mismatch repair protein MutS
MTSKKPTPMMKQWHQCKEQAGESLLLFRMGDFYEAFYDDAVLLSQNLDIN
LTQRQGIPMSGIPVSTVNGYIDRLVSKGFKVAIAEQIEEAQNNKGKSEPL
ARELQRFVTPGTLLSSSLLPEKANNYIVSIYRVGSLFGFSCLDFSTGAFL
LNEYDNMKDLIDEICRLAPTEILSCDKFYKKHFEIVEQIQQHLKLTLSTY
SDWAFEHQFATQKLSSHFNVSSLDGFGLKGLVPAINAAGALLSYLQDKLL
LPVEHISVPKTHGNQKHLLIDTASQVNLELLTPIHDPQGKSSLLHVMERT
CTPMGGRLLRNTLVNPFYDQKEILLRQDAVEFLLNRSELRKNLRSFLSQV
RDLERLTTKITTALAGPKDIGMLRDSLNASMHICEILSPLPLPEFFHGKF
TLGLGLASLLELLSKALFGELPLRISDGNIFSDDHHPDLKRLRYTRENSK
EWLWQYQDAIRTQTGVKKLKVCYSQVLGYYIEVSSDLAPLLPKDFIRRQS
RLHAERFTTEKLQEFQDDMLNVSDKLQTLETQLFKDLCAQILEQRDAILS
LSQVIADTDYILSLADLAAEYGYCRPIVDTSDSLSITGGMHPVAQTLLDR
GTFIPNDIKMHSARTRMILITGPNMAGKSTYIRQIALLIIMAQMGSFIPA
RSAHIGMIDKIFTRIGAGDNLSKGMSTFMVEMAETANILHNATDRSLIVL
DEVGRGTSTYDGLAIAQSVVEYLLFTEGKKAKTLFATHYKELTDLENHCP
HVENFHAGVRENGGHPVFLYEILKGHSQKSFGIHVAKLAGFPLCVISRAQ
QILRQLEGPETTSKQTQEKVQQLTLF
>CCA00392 mutY, adenine glycosylase
MVKIAFSERAKKFPVEKLKQWFTDNKRSFPWRDNPSPYNVWVSEVMLQQT
RAEVVVKYFIEWMERFPTIESLATAKEEDVIKAWEGLGYYTRVRNLLHGA
RMVMKDFGGELPDDPLDLMQIKGLGPYTVHAILAFAFKRRTAAVDGNVLR
VISRVFLIDASIDLESTKTWVFRITLSLLPAKDPQIITEALIELGACICK
RVPKCEICPLNAMCGAYKEGRQKSLPIRHARKKTVTLFRWVAIVLYEDSI
VLEQRKPEEMMAGLYEFPYIEVESFDDFSDIEGLIQEMGERVGTPLVFHG
EIEEQRHAFTHYKVRLIPRIFRAKFKPKPELLYPLKGLDSLPFSSGHRKI
KAWLLENAYIVSNPELVKV
>CCA00012 nfo, endonuclease IV
MQVFPPPQVPLLGAHTSTAGGLHNAIYEGQEIGASTIQMFTANQRQWRRR
PLTDSLINSFKTALKETSLSYIMSHAGYLINPGSPNPEILEKSRICIQQE
IQDCISLGINFVNFHPGAAVNDTKETCLDRIISSFSLMEPLFENSPPLVV
LFETTAGQGTLVGSNFEELSYLIDNLNHKIPVGVCIDTCHIFAAGYDITS
PESWKRVLKNFDDVIGLSYLRAFHLNDSMFPLGQHKDRHAPLGEGDIGIE
SFKFLMTNEDTRMIPKYLETPGGPDLWAKEIRQLQSFQK
>CCA00929 nth, endonuclease III
MENKTLIKNFIISTLNDLFPNPKPSLTGWETPFQLLVAILLSGNSTDKAV
NSVTPELFSAAPDAQALAKLPLDKLYFIISPCGLGKRKAAYLHDLSKIIS
EKYRGEPPASLELLTKLPGVGRKTASVFLGIIYNMATFPVDTHILRLAQR
WGISNKRSPSAAEKDLVRFFGDMNSPKLHLQLIYYARNYCPALHHDVNTC
RICSHLRDLSRKTN
>CCA00985 pcrA, ATP-dependent helicase PcrA
MLTSELNEAQIAAVTSPLSPTLVLAGAGAGKTRVVTCRILHLINEGIAPK
EILAVTFTNKAAKELKERILHQCPQAHGSDVPMVCTFHSLGVFILRRSIH
ALNRENNFIIYDQSDTDKLLKQCLQKFNLKKTLSSSIQYHISQAKNRLLY
PEDLDPEEYIDPVVSIYKEYQQRLNETNALDFDDLLFLTVKLFKEFPEIR
KEYSELWKALLIDEYQDTNHAQYMMAQTIAGKHHNIFAVGDPDQSIYSWR
GANIHNILNFEKDYPRALVLRLEDNYRSYGNILNAANALIQNNVSRLKKD
LRSVKGPGEKIRVFLGKTDKEEAEFVAEEIYRLHKRANICLRDICIFYRT
NFQSRTFEDALLRRRIPYEILGGLSFYKRKEIQDILAFLRMFSAKCDVVA
FDRTVNLPKRGLGPTAISSLIDYALTNNLPMLEACKNALETQAVKLSKKQ
QEGLRCYLSIFQQLEHAYETLSLNEFVVATIRITGYLQVLKEDPDTFEDR
KSNLDELASKTFEWEQQNTEGSLESFLDDLALKSSTDDSELIADRVNLMT
IHNGKGLEFRIAFLVGLEENLFPHANSKGNYENLEEERRLCYVGITRAQD
LLYLTAAQTRFLWGTVRVMKPSRFLKEIPRDYLIQVH
>CCA00039 pkn5, serine/threonine-protein kinase
MDCQSEMLSHNQVIGAYHIKKLLSKKEGSTVYQGVHPDTLQPAAIKVLAT
PLVTDTPRVHNFLKEARIIEQISHPNIVKLYQYGQCREGLYIAMEYIQGV
SLRHYILSQLIPLSRAIDIILHIAQAIEYLHSRGILHRDIKPENILITSQ
GNIKLIDFGLAISSIDKDARPLYLGTPSYMSPEQRQGDKISELSEIYSLG
LIAYELILGNLALGKVVLSLIPDRVSKILAKALQPSPTDRYASMKEFIID
LHRYRHGEDLQKDLRNKDHTAMVNDQLYHQRFWLSPLEIVVPEYLAVSIH
EHGYPTHPHVYYEAYMSGDTFRLWFCYSLSGNPTLVLTVMKSFVSQWGHE
ENIRSTIRKMHSELMRINVPINGKGISLFCVTIPKEKKELSWIACGKTSF
RLKKQGKVPEIFTTSSAGLGKISSLQIQETKVAWEIGDGAVLHTLQADDS
MSSLHSPLFTELKDRGQTAIFCPIESVRYGIEENHDGNLCPSTLISLKRI
R
>CCA00128 polA, DNA polymerase I
MRKIFILDASGFVFRAYFALPDMKNSSGEGTQAVFGFIRSINKLIKEFSP
SHMVAVFDGPNNKQSRREIYADYKSNREQKEENLYQQIPVVKEYCSLLGL
SYLEVEGVEADDVIASATRQAVSEGYQVCICTADKDLLQLVGPNVVALNP
WKDQPEIDENRVIDIYGIPPTGISDYLALVGDTSDNIPGVSGCGPKKATA
LLQKYHSVEGILENLDELTGSTHKMLSEQKDVLLLSKSLAVLNDAIPLPK
RIDELKFPLYEAHQEELNAFYMRQGFKTLVQQVEEASSVDVEIINNNKQL
AHVLSTLHGKSVAFSVGYKGSFLPSLTLMGVALASDDDVYYVDIEHALDD
VLTPLQYFFRREDTTFYGYNIKRDNHALKNAGIHVHNIALDLALAEHLIN
GGAKISYQTLLMDHGLVSSAGRYGKEWGQLSLPIAKSPANPAQYFGGFVS
HLPKIKKSLLEELKIKGVEDLFFNMEMPLEKVLFTIERNGMPLDVEDLQE
LERILSEELAMLTDDIYTLAGAPFNIKSPKQLSEVLYNKLGLKPIDKARS
TKAEVLEALSGEHEIIEKILAFRAVEKLLSTYVKALPRQVDPSTSRIHPT
FNQMGTVTGRLACQDPNLQNIPIRSERGRLLRKAFCNTHQNNYFLSADYS
QIELRFLAHLSQDESLKLAFESREDIHTFTASQVFHVPLEEVTKQQRMQA
KTVNFGIIYGQQAYGLSKILKISVSEAQKLIDAYFDRYPEVARFINETVS
QACENLRVKTLLGRERIIDNWTEFSNSRAASGRLAVNTRIQGSAAELIKL
AMLQLSDALEKRKLKSRMLLQIHDELIFEVPEEEKEEMQTLVRDIMESAM
ILSVPLVVNILIGKNWAEC
>CCA00845 priA, primosomal protein N'
MGNIESTTFRLYAEVIVNSNINKVLDYGLPKNLEHITKGTGVSVSLRGAK
KYGIVHQIKATTECRRVLPVLGVIDSGIVLPQDLLELMFWMSQYYFAPLG
KTLRLVLPGISSSIIQPKQHYRVLLKQSKAKTKEMILALQKESPSQAATL
KTLLSCSSPPGFSELMEKAKVSQSPIHSLEKLGAIEIANAADLEIQEDSL
TFFLPDAHPLHPQQQSAVDKISSSLSLGKFQTHLLFGITGSGKTEVYFQA
IREARKLGKSAILLVPEIALTIQTVTLFKAHFGKEVGILHHKLSDSDRNK
TWREASKGNISIIIGPRSALFCPVQNLGLIIVDEEHDPAYKQSESHPCYH
ARDVAVMRGKLAHATVILGSATPSLESYSNALSGKYILSELSTRAAAASP
AKVSLIDMNMEREKTKTKTLFSQAAIRSIEKRLAVGEQTLVFFNRRGYHT
NVTCSSCKHTLKCPHCDMVLTFHKYANVLLCHLCNSSPKDPQTSCPKCHG
AMTLQYRGSGTEKIEKVLHSIFPEVRTIRIDSDTTKFKGSHESLLKQFAT
GKADILIGTQMIAKGMHFPAVTLAVVLNGDSGLYIPDFRASEQVFQLITQ
VTGRSGRSHLPGEVLIQSFLPDHSTIRCAMQQDYSAFYNQEVTGRELCSY
PPFIRLVRCIFIGKCPRLTWKEAHRIHTALEKKLDAHTQLMQITPCGHFK
IKDLFRYQFLIKSKQVLPVNKKLHEALLSAKLSPKVKFMIDVDPTTTFF
>CCA00995 recA, recA protein
MNVPDRKKALEAAIAYIEKQFGAGSIMSLGKHSATHEISTIKTGALSLDL
ALGIGGVPKGRIVEIFGPESSGKTTLATHIVANAQKMGGVAAYIDAEHAL
DPGYASLIGANINDLMISQPDCGEDALSIAELLARSGAVDVIVIDSVAAL
VPKSELEGDIGDVHVGLQARMMSQALRKLTATLARSQTCAIFINQIREKI
GVSFGNPETTTGGRALKFYSSIRMDIRRIGAIKGNESFDLGNRIKVKVAK
NKLAPPFRTAEFDILFNEGISSAGCILDLAVEHNIVEKKGSWFNYQDRKL
GQGREAVREELKKNKKLFDELEKRIYDISSASKVVAVEEKKEELKAQPVA
>CCA00007 recB, exodeoxyribonuclease V, beta subunit
MKPFDIFNPQTSIRGKYFLEASAGTGKTFTIEQIVLRALLEGSVSHVENI
LAVTFTNAATNELKLRIQDNLKQALCQIKSVLEDPSKSLPPYLKDTSNVK
LLYMQVRNALATIDRMAIFTIHGFCNYVLQQHFPKMQMTQKNAALTHSQA
VFHHIKKYLSQDLWRSVLFPEQFYLLAAKYNSNSKHTAFLTDKLLSSYTL
QTFEHLPQTSTTLDALRSWHNSIRSKIQDIPKEDFLRQILQHKDGFKKQP
FPIDEDLRLFVECLYASETSVQLFSFSKIAETFHPKNRLTRYKPSKAFSH
IEETLWSLYTEQFCNIELIFNTLLQDVQLYLKNHYTQWLSPDESILALEE
ILLSSRSEEIIETLRKRFQLVLIDEFQDTDRKQWNIFSKLFANDAFSGSL
FLIGDPKQSIYEWRNADLATYLKAKSSFPKSSQLHLINNYRSTAQLMEAV
NILFCKCSPFLQIPSYEPIEYHPLCPQSSEHFENSHHAPIHFFSYDDISD
QAAWISHTASYLQATYHIPLGRMAILVSDSAQAFDLITHCSIPVAFSKNK
SIFHLTETYLLTLAWLEAILHPENYEKIQRVLLSSLFRHNLSDTIEKKEL
YSTYFFSLRSYVFDYGLLATFYHFMTLQGEALLKTPQGDLSFQEMERLCA
YLDTVSSHPQHQLLYLQYFSETGRWEESLSFSSYSEDTEILKITTIHASK
GLEYDVVFCPGLDKSKKNKSASEWIREMYVACTRAKKQLFIPIQNSSNSR
CNSALTNYVKHVGSYESILDLAQQLTKEHPRLFSLSITETRSETTDPVYK
IIPPSTFTLSIAPAKQIFSFSSVKLAFDNEVSLDNVPAEPVASFVLPRGR
KTGIIIHKILENISPNFKISFSKIVSIVTHFVKNTHLEGYEEIISQKLVT
TFSSPLSFATESFSLQDICPSKIACEESFLFSNQEQLWQGVIDLFFEYND
KYYIIDWKTSFLGETSLEYSKENLLNYIKEQNLDYQGAIYTHAAKRFLQQ
FDIVSDVEMGFIFIRGMDPEGNGFLCLPNQKISNPTITRKCPAYH
>CCA00008 recC, exodeoxyribonuclease V, gamma subunit
MNATKHSQAFFSNSPTHLLAKLAEDLFSTYQQPFTKRWILVANTEIGHWL
RRELTNATSNHIFMGSTIFSSSDSLVKHLFSEVCHEKALIPDYITLPLFI
HELLNITDSPVDGRLSKLPSEPSYSSTKSLAAIFKKFYTFSQSPSENNRY
HKDLFSQLDKHFMPIDKVFSSILGSLDSEKQNRSLHVFGYSHLPKHFATF
FTELSNFFPVYFYCFSPSREYFGDLLSDKSIDFLWRQLADQPKRDAWEHY
VLADRQALLANLSHKSQASQNFFLDKEVDYCEAFVAPQESTSLGVLQSNL
FYLRPNSTENTLDKDQTATISNALNPSREVHEVFLKISSLLHKGVAPEEI
FILSSQLETYEVYLKAVFQPHLPLYFTNSTSTHAKELKEKFLLLSSIIQT
QGNLYRLLQLLIHPQLQNSIEISKTPHLLKRLSSEWEKLYKGDSTHVQNL
GDNILNEYPFVEECGKVSQIELWERILPLLYDLQNFINAYSTSTVQTYEQ
HFTQSISSLESIFVLSSEELSLISSLRNALFPTFASSKCSLVFFTDFCLD
FFDRFCGNSPIYDKPGPYVGSLGDLSLLPKGYTFILGANKRTQTVDFLDL
VDTTTQEELVFSSSEDEENFHFLQAIVSTKHELHVSYQSSAHNPALPCAY
VNYLQEALNLSVTHFPSKAYTPSLFSKETLVHTSQEYHHKLARAFCSIKE
PLPSLFQPSKNTPTLPCHVSVSQIIKAISSPLDFFLKANYHVSLRSPATL
ETREKLFPTKKQVLLFWEKQLSNTSENISNNYLSSSSKAMFAAYDELIEK
WLEKARQYPSTSPYTVIFSSLLFHDYLNDQDKILLPVCLNMNGKEVSLHG
RFSGVFSKGIYLCSIDPLAKTRKTLKKTRAVPENSFEMQNYLKAYIAIAM
LQQSNAITKHAIIRNITSHDNFEDLSLPFSSPEKYLNQVLQVYQMMKEHP
IPLISSECWKFLDNPEKFHEAVSATIETDANNPTLSLFWKFHNRDYQDQF
TISEEQRLLLLSLFKDVHETV
>CCA01005 recD, exodeoxyribonuclease V, alpha subunit
MPSLSLDIPHYLYDIVQQQLVLPLDLAFAKKYASPESKKAFAFLALSSAL
WRCGYPFLNIDKDRLFPSLSGVSEKLFYEYFKALPEDVCSSLFVIENNRI
YLRSLYAVREKLFSKLSLLSQASPRYNVTTESLPKLSSEQNIVFQKAINS
CFSLICGGPGTGKTFLAIQIILILIKQYPKIRIAIVSPTGKATSHIRQIL
SKHDISEDNVSIQTIHRFLQEHVYHQCSSVDLLLVDEGSMVTFNLLHSLV
NTLSGENKEGKIIADNLIILGDANQLPPIGVGAGNPLQDLISRFPDRALH
LQVSHRAKTDRVQNFSKAILEKQSIPFTPLPSMHSAIAKIKEAFIQTPSS
QTQLCILTPMRHGPWGYLRLNELIFNEIQKTHPNLPIPIMITERYEAWGL
FNGDTGFLCPKTQQLFFPHCRSIDSREFSYYTYNYAMSVHKSQGSEYDDV
IVIIPKGCEIFDVSILYTAITRAKHSISVWADSETLNKIIKKPHKYTYGV
E
>CCA00444 recF, recF protein
MKILSLRLKNFRNYKEAEVSLSPDMNYIFGENAQGKTNLLEALYVLSLGR
SFRTTHLTEAIFFGSSHFFLEMTFEKDGFCHTLSTYVDKQGKKILCDHSP
IKTLSQLIGMVPIVLFSSKDRSLISGAPADRRLFLNLLLSQCDPQYKHTL
SYYHRALLQRNTLLKTKQTSTLSVWDEQLATLGAYLTVSRYFCCEQLNQL
VQELWSNSLSEQLRIKFKSSLIKQGNLSQEAIIEELRKQLTTALHRDLEL
GTTSVGPHREDFTLMINDLSVAQFSSEGQKHSLLAILRLAECLYIKNIYN
ACPLFCMDDIHAGLDNHRISQLLDLAPTLGQTLMTSTNIPHQSLSETSKI
FSVNQAQISIHSHLIVN
>CCA00179 recJ, single-stranded-DNA-specific exonuclease RecJ
MAIKDNSSVPSPNWVYPKQDPALLSALIKELHLHPIAAQIFISRGFQTVN
EVRDFLYVHLDNLHDPELLLDMTKAIERLLLAKERNEHVMVYGDSDVDGM
TGVALLVEFLRSIDMKVSYCFLGALLKHYGEPSSLIAKMKEEKVTLLITV
DCGITAGKEVSDINKQGIDVIITDHHMPTGKIPHCIATLNPKLRDRAYPN
KELTGVGVAFKLARGVLNALRKENPKLKVDTKHLLDLVTLGTVTDVGTLL
GENRTMVRHGIKEIAKGSRLGLHKLCIFAGVKPSEVTSTDIVLKISPKLN
SLGRLADAAKGVELLLTQDPETADEIIQYLDKINRERQKIEADVFHDVQK
ILKNKPEIVKQAAIVLSSNDWHARVIPIISARLAKAYNKPVAIISNQGGV
GKGSLRTIGSFPLLGILQKCSSLFISYGGHDFAAGIIINEDQVEAFRKKF
IHLVNSSLKKDKAVLTLPLDAQADFDEIDHDLLSSIDLFEPFGKGNPMPV
FYTIVHQVRYPKLLPGNHLKLYLNHGERNLEGIAFGLGDRIEALKANWNK
PLELAYTPRLSQSSNGGVIHLLVRDFHILPLNYKDSQPKF
>CCA00483 recR, recombination protein RecR
MLKYPDYLSKLISLLRKLPGIGFKTAEKLAFELLDWDQDQLEAMGQAFSE
VSAARSHCSTCFCLKNLPESNCEFCQNNRDTSTLCIVATPKDIFSLERSQ
IFKGHYYVLGTLLSPITGKHIDVERIGLLKQRIEFLKPQEIILALDATLE
GDATALFLKQELAFSSASISRLALGLPIGLSFDYVDSGTLARAFSGRNPY
>CCA00654 rnhB, ribonuclease HII
MKTLAIDEEQLFLSKTIFEEEVYGEGFSIIAGVDEVGRGPLAGPVVAGAC
ILPRGKIFAGVNDSKKLTPKERGKIRDILLNDPDVCYGIGVVSVERIDEI
NILEATKEAMAKAIANLSVHPDFLLIDGLHLPHKIPCKKIIKGDSKSASI
AAASIIAKEYRDDLMRELHQRYPNYGFDKHKGYGTAAHLAALRAFGPCDC
HRKSFAPIRQVV
>CCA00293 rnhC, ribonuclease HIII
MSTPFVTTLSPSLHGLLKDRLEEKGFILTQPQYTIFQARSPSVTCVLYSS
GKLVVQGKGSKEFIKFFLEPEILLTFTHNRVEEDLRPRLGVDESGKGDFF
GPLCIAGVYAKDEETLKNLYKTKIQDSKLLNDAQILSLAKTIRASCSCDV
MILYPEKYNELYGKFHNLNILLAWAHATIIDQLAPRPSGEVFAISDQFAS
SESVLLNALRKKNTDISVIQKVRAEQDIVVAAASILAREAFITAMTKLEQ
RFSLKLPKGASAQVKSVGKSILNSRGKEVLSLICKTHFKTFNEICDSASA
>CCA00120 ruvA, Holliday junction DNA helicase RuvA
MYDYIRGILTYMSSGTLVIECQGLGFNIFAPDRWLIELSGQLHREVVVYT
YTVVRETEHVLYGFSSRRERECFRMLISFSGVGPKTGLAILNTFSLSKLC
SIARAEDVRAIASVPGIGKKTAEKLMVDLKQKLPDLLPLDSKAIASWESV
KPSCMDEGIQALAALGYSKPSAERMIAEAMSELPENASLAEILPIALKKN
LQGLNKS
>CCA00406 ruvB, Holliday junction DNA helicase RuvB
MTHQVSVLHQDKKFDISLRPKGLREFCGQKQLTERLELFLHAAVQRGEVP
GHCLFFGPPGLGKTSLAHIVAHTVGKGLVVASGPQLVKPSDLLGLLTSLQ
EGDVFFIDEIHRMGKVAEEYLYSAMEDYKIDITIDSGPGARSVSVDLAPF
SLVGATTRSGMLSEPLRARFSFTGRMSYYSDEDLTTILKRSSNLLGIDAD
TAALYEIARRSRGTPRLANNLLRWVRDFAQMREGNCINSDVAEKALAMLL
IDDWGLNEIDIKLLTTIIDYYQGGPVGIKTLSVAVGEDIKTLEDVYEPFL
ILKGLLKKTSRGRMVTQIAYNHLKRCSDNLQSLGEEK
>CCA00119 ruvC, crossover junction endodeoxyribonuclease RuvC
MTQLIMGIDPGTLVSGYAIIHIEQRYKIRAHSYGAIRLSSKDSLTQRYKQ
LFQTLSGVLDDITPDAVVLETQYVHKNPQSTIKLGMARGVLILAAALRDI
PVFEYAPNVAKRAVVGKGNASKQQVQLMVSKILNIPDVLNSNCEDIADAF
ALAICHAHTSAYTCLGVR
>CCA00410 ssb, single-strand binding protein
MMFGYFVGYLGADPEERMTSKGKRVVVLRLGVKSRIGTKDETVWCKCNVW
HNRYDKMLPYLKKGSGVIVAGDISVESYMSKDGTPQSSLVISVDTIKFSP
FGRNESRSLSLLEESSAQTTSYDNVSLGFEGESLDAEAIADKDMYAGYGQ
GQQYVSEDVPF
>CCA00988 topA, DNA topoisomerase I
MKKSLIVVESPAKIKTLQKLLGKGFIFASSLGHVVDLPAKEFGIDIDHDF
EPDYQVLPDKQEVISQIRKLASSCDVVYLSPDPDREGEAIAWHIANQLPK
NTHMQRISFNAITKGAVNEALKHPREIDMALVNAQQARRLLDRIVGYKIS
PILSRKLQQRSGISAGRVQSVALKLVVDREKAIEAFVPTEYWNIRVFLQD
PKTSKTFWAHLYSADGKKWEKELPKGKTEDEILLINSEAKAQHYVELLED
ASYRVTRVEAKEKRRNAAPPFITSTLQQEASRHFRFSSSKTMSVAQTLYE
GVELDNEDATGLITYMRTDSVRIDPEALNNVRDYIQDTFGQDYLPKSPNL
YATKKMTQDAHEAIRPTDIQLSPDKLQGKLTDDQFKLYSLIWKRFVASQM
NPAIYDTLAMTISTNVKIDLRASGSLLKFKGFLAVYEEKIDDDVAEEENL
SLPQLHAQDVLDKERVSAEQAFTKPLPRFTEASLVKELEKSGIGRPSTYA
TIMNKIQSREYTIKENQRLRPTELGKIISQFLETNFPRIMDIGFTALMED
ELELIADNKKSWKLLLKEFWDQFLPVVTTAEKEAVIPRVVTDIECSACHK
GKLVKIWAKNRYFYGCSEYPECDFKTSEEELAFNKDDYAVDTPWDSPCPV
CAGKMKVRHGRFGTFLGCLNYPECRGTISIHKKGEEVEKEESIPCPAIGC
SGKILKKRSRYNKTFYSCSEYPDCSVIGNTIDAVVTKYTGTTKTPYEKKT
TGKKKSASKSRKTTKTPAKKKKSEGKTTKTTRVGALLTPSPELALMIGDE
PVARGEATKKVWKYIKDHNLQSPENKKMLVPDDKFQAIIGPEPVDMFQLP
KLLNQHLFKAG
>CCA00984 ung, uracil-DNA glycosylase
MQNAFTIDQLPLSWQEQLKTEWSQPYMHKLREFLQSEYSQTTVFPAKDNI
FTALKSTPFDSVRVVILGQDPYPGEGQAHGLSFSVPQGVRLPPSLINIFR
ELQTDLGIENTTGCLQSWADQGVLLLNTVLTVRAGTPFSHAGQGWEQFTD
AIVTKLIENRSHVIFVLWGNAARKKCDLLFHSSHKHAILTAPHPSPLAAH
RGFFGCSHFSKINYLLKKLNKPMINWKLP
>CCA00676 uvrA, excinuclease ABC, subunit A
MPSLPVHISGITVRNLKNISIEFLPGEIVLLTGVSGSGKSSLAFDTVYAA
GRKRYVATLPAFFATNLSPLPDPTVEKIHGLSPTIAVKQNHFAYHAHSTV
GSAAELSQHLALLFSLDGEARDPHTKQTLHLQSKEKILATLATIPEGTQV
TILAPLINISRASIQECVRQGYTKIRIDNVISSIYPFLTSPLSEESPVAI
VVDSFIKNESNNARMKVSLFSALDLGQGKCSISTETYEETFSTQVYIPET
QQTYAPLTPQVFSPHSLEDRCTQCQGSGIYITIDDPSLIQNDLSIRENCC
KLAGNCSTYFYHALYQSLADTLNFSLDTPWKDLPDSVQNAFLYGQKHLVL
PVRLFDPTLGKKPLSHKVWRGILNEIGEKVRYAAKPSKYIPEGTSATSCP
TCQGTGIGEYACAATWQGKTFVEFQKMPLDEFFSFTSSITPTLPSIREVL
DGLNNRLSILINLGLSYLTPERTLATLSGGEQERTALAKHLGAELSGITY
ILDEPSIGLHPRDTHKLIQVIQKLRDQGNTILLVEHDEQMISFADRIIDI
GPGAGIFGGEVLFNGTPADFLKTCDSLTASYLRHELTIDIPVRRPKTKAR
LTLSHATINNLKDITISLPLERITAVTGVSGSGKSSLINDTLVPAMERVI
QGDKDSHLCIEEGTIERVVHITRDLPGRSQRSISLTYIKAFDDLRELFSQ
QPKSKRLGLTKGHFSFNLSLGACTECQGIGSITLDNHTPIPCPLCHGKRF
QPQILEVRYQGKNIADILAMTAYEAEKFFMSTPHIHEKIHALCSLGLDHL
PLGRPLSSLSGGEIQRLKLTYELLAPSKKPTLYILDEPTTGLHTHDIHAL
IHVLQSLTQQGHTVVVIEHNMHIVKIADYVIELGPEGGNLGGYLLASCTP
EELISLNTPTAKALQPYFKKTKALPKLAEKSQNRHLLKDISIQNAYHHNL
KHIDITLPRNALTAISGPSASGKHSLVFDILYAAGNIAYAELFPYYVRQA
LIKQTPLPQVESVRGLSPVVAIKKTGIRKNSRYSLASSLDITNGLEKLFA
LLGKPHCPLTGKPLKKITPQTIIDKLFQNYENSYVTITAPISPEEDLSIA
LEMKKKEGYLKLFANNEIYDLGEHLPEILEDPAIIIQHTKISKSHESSLL
SSLTLAFSLSRTIRLHIHNQGKIQHSLSYTLGWQDSLGNSYPNITRKLLS
REHSEGQCQQCCGSGNVLKLSLTAHKDKILHYSPLDLFKLFFPDISPKRV
VDLIRELKISSSTQIQDLDPPTQEKLFQGTQKHAGLERILMEQCNLVPFC
PLLHPLILSDTCSGCSGWGIHTYAQQVRIGETSLIDIYQEDTEFLKNLLM
TLHDDQAQPIIQDLQNRLAFIDKVGLSYITLGQQQDTLSDGEHYRLHLAK
KISTNLTDIVYLLEDPLSGLHPQDIPTLTKLLKELVTNNNTVIATDRNHL
LELCADHTINLGPGSGPQGGYLTNPLPSSIEDDDHKKVFSKDTLEVRLSI
HNISNLHVQAPLYSLVAIAGVSGSGKTSLLTEGFYKQAQKLIDTGNAHFS
NVVFLDSHPLSSSQRSDISTYFDIAPYLRNFYASLTQAKALNITASMLST
NTKHGQCSDCLGLGYHLIDRAFYALEKRTCPTCSGYRIQPLSQEVVYEGK
HFGKLLKTPIEEVLTIFPFLKRIQAPLQALIDSGLGYLPLGQNLSSLSLS
EKISVKIARFLHLAPQEPSLFLLDEIATSLDVNKKCQLQKLFRTLISQGH
SIIYVDHDIQLLKHADYIIELGPGSGKYGGKVLFSGQPKDLATSKKSVLK
TYMSGL
>CCA00962 uvrB, excinuclease ABC, subunit B
MTFELRAAFAPCGDQPEAIAKLTQGIRNDVQSQVLLGTTGSGKTFTIANV
VANVNRPTLVLAHNKTLAAQLYQEFKEFFPNNAVEYFISYYDYYQPEAYI
ARNDTYIEKSLLINSEIDKLRLSATRSILERRDTLIVSSVSCIYGIGSPE
NYASMALELKVGKEYPRTLLAAQLVKMNYQASPVAQRSTFRERGSVIDIF
PAYESDQAIRLEFFNDTLSSIEYSDPLTMIPTASVASTIIYPGSHYVTPE
AVREQAICSIREELEERMLFFHDRPVEQDRLFHRTTHDIEMIKETGFCKG
IENYSRHFTKMPPGAPPACLLDYFPEDFLLVIDESHQTLPQIRAMYRGDL
SRKQSLVEYGFRLPSAYDNRPLTYEEAQKYFHNVIYVSATPGETELNESQ
GHIVEQIIRPTGIPDPIPEIRPATGQVDDLLEEIRKRLSKSQEKILVISI
TKKLAEDIAAFLSELDIAAAYLHSGIETAERTRILADLRLGNIDVLIGVN
LLREGLDLPEVSLVAILDADKEGFLRSTSSLIQFCGRAARNVEGKVIFYA
DQKTRSIEQTLKETERRRQIQLDYNKANNITPKPIIKAIFANPIPQGGKK
ESQEPAKTPLSIKELEKLIKKFENLMQEAAHEFRFDEAAKYRDKMKAAKE
QLLYLS
>CCA00830 uvrC, excinuclease ABC, subunit C
MRVKDFTPKLVPTSPGVYLMKDDSGEVLYIGKAKNLRNRITTYFQKQGDS
RERIPFLMKKTTTIETILVSNETEALLLENNLIKKHHPKYNVLLKDDKTF
FCLAISLTHPWPKIDAIRTKAITSSKRQIIFGPYVSAEACRTLLEVISQW
FPLRTCSNREFASRRRPCILYEMKRCLAPCVHLCTHEEYEETLEKAVLFL
KGKVSEIIQDLEKSIEKASQEQKFEQAGIYYRTLKLIQQAMEKQHVEKFH
FQNIDAIGLYRKYQETVITVLTVRSGKLLGARHFPFSENAQEDTDLLSSF
ILQYYANQPQTPKEILTPIPLNIPELPYLLNKDTPPQLRSPKTGYGKELL
TLAKNNAKVHAETTTQSSSLPYEEMKKILKSPDYPYRIECYDNAHLQGSH
GVGVYIVYENDAFSPKSYRTFSISSLAHNDLATFHEVLSRRFSSLTSSLP
DMIVIDGGRAQYSQAKKTLKELNLTGIQVVSLAKEASNHSSSLRNEKLFC
DTFPQGIQLAPTSKLLQFFQKLRDEAHRFAISKHRRKRYKDLLFPQEKIP
GIGEVKRKRLLQKFKSWKQVMKASQGELEAIPGLTKKDIQQLLAKQVEDS
KLTED
>CCA00737 xerD, integrase/recombinase XerD
MTSAQFCDVILEQFILFLSVDRGLCRNSISAYCQDITLFLKINAITSTEE
ISQDSVYLFVQQLHKRKEAESTLARRLIALKVFFRFLKEAKLLDHPPLIE
HPKIWKRLPSVLTPKEVDALLSAAQQSKTSPIISARDTAILLTLYSTGIR
VSELCDLCISDVSDDFLRVTGKGSKTRLVPLGKVACKAIDAYLCPFRETF
QKLHPEEHHLFLSVRGHRLERSCVWRRIHYYAKQVTHKRVSPHSLRHAFA
THLLDNKADLRIIQEMLGHARIASTEIYTHVAADTLMENFLSYHPRNP
>CCA00307 xseA, exodeoxyribonuclease, large subunit
MTTSSPPQAVTTLTESIKNLLESNFCHIVVKGELSNVSLQPSGHLYFGIK
DNRSFLNGAFFHFKSKYFDRRPKDGDSVVIHGKLTVYAPRGQYQIIAHAL
VYAGEGDLLQKFEETKKRLAAEGYFAIEKKQALPTIPKSIGVITSPTGAV
IQDILRVLSRRCYQYKLLIYPVTVQGATAAKEISRAIEEMNKENLADVLI
LARGGGSIEDLWAFNEEIIVKAIAASSIPIISAVGHETDYTLCDFAADVR
APTPSAAAEIVCQSSEQQIQVLKSYLRYLNAHAQQLLSGKTKQIQQWKRY
LDHVDFFRPAHQSLDYLCLSIERSIKIKLSQYKQRYMQYARWLQSDVLQR
MTYRLYDLWKMIVQAFHNRLIAAKHLCIHQKKNLTFLNTQQFIQKLDLWK
QQTRRALRQRLGYCSQSLTHQQTSLKHFITKLNQQFTKENHALSLLQKRL
TRTFANRVDEHRESYMRSRENLIFSLHHLVKRNREKYSQVSKQLTLLNPK
NVFKRGYAMLFDFNENFAIISAKSLHKHSCVRVRLQDGEATLTVTDIQNF
ETQES
>CCA00306 xseB, exodeoxyribonuclease VII, small subunit
MEEIPFENAMARLEEIVDLMNQPSTSLDSSLKLYEEADALMRICESRIRK
AEDRVRELSEKRNETLLSEEESCTH