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2024-05-20 01:23:43

Gene list

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COG category: Replication, recombination and repair
Organism: Chlamydophila caviae GPIC

Number of genes found: 74

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Chlamydophila caviae GPIC
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
NA CCA00931 helicase, Snf2/Rad54 familySubName: Full=Helicase, Snf2/Rad54 family; chromosome CDS1080395 3618 + 0.386401
NA CCA00966 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1122718 2892 + 0.400069
NA CCA00135 conserved hypothetical protein TIGR00095SubName: Full=Uncharacterized protein; chromosome CDS142047 570 + 0.382456
NA CCA00970 deoxyribonuclease, TatD familySubName: Full=Deoxyribonuclease, TatD family; chromosome CDS1129289 801 - 0.409488
NA CCA00489 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS553157 2778 - 0.37005
NA CCA00036 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS45344 519 + 0.385356
NA CCA00677 serine/threonine-protein kinaseRecName: Full=Serine/threonine-protein kinase PknD; EC=2.7.11.1; chromosome CDS778941 2793 - 0.386681
NA CCA00753 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS863122 1278 - 0.363067
NA CCA00351 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS401993 1752 + 0.403539
NA CCAA00002 virulence plasmid integrase pGP7-DSubName: Full=Virulence plasmid integrase pGP7-D; pCpGP1 CDS1638 924 + 0.323593
NA CCA00239 DNA-3-methyladenine glycosylaseRecName: Full=Putative 3-methyladenine DNA glycosylase; EC=3.2.2.-; chromosome CDS252211 573 - 0.415358
NA CCA00378 integration host factor beta-subunit, putativeSubName: Full=Integration host factor beta-subunit, putative; chromosome CDS428599 303 + 0.39934
NA CCA00027 topoisomerase, subunit B, putativeSubName: Full=Topoisomerase, subunit B, putative; chromosome CDS35604 1809 - 0.36042
NA CCA00227 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS243153 990 + 0.358586
NA CCA00800 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS917262 1068 - 0.386704
NA CCAA00004 virulence plasmid replicative DNA helicase pGP1-DSubName: Full=Virulence plasmid replicative DNA helicase pGP1-D; pCpGP1 CDS3733 1377 + 0.338417
NA CCA00650 helicase, putative, RecD/TraA familySubName: Full=Helicase, putative, RecD/TraA family; chromosome CDS742283 2208 + 0.380888
NA CCA00026 topoisomerase, subunit A, putativeSubName: Full=Topoisomerase, subunit A, putative; chromosome CDS34161 1440 - 0.385417
NA CCA00316 site-specific recombinase, phage integrase familyRecName: Full=Tyrosine recombinase XerC; chromosome CDS367524 939 - 0.382322
NA CCA00598 conserved hypothetical protein TIGR00250RecName: Full=Putative Holliday junction resolvase; EC=3.1.-.-; chromosome CDS678414 492 + 0.408537
NA CCAA00005 virulence protein pGP2-DSubName: Full=Virulence protein pGP2-D; pCpGP1 CDS5103 1044 + 0.333333
NA CCA00852 mutT/Nudix family proteinSubName: Full=MutT/Nudix family protein; chromosome CDS974943 450 - 0.388889
NA CCA00156 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS163591 3021 + 0.421053
NA CCA00152 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS160022 708 - 0.387006
NA CCA00618 protein kinase, putativeRecName: Full=Serine/threonine-protein kinase pkn1; EC=2.7.11.1; chromosome CDS708041 1857 - 0.403877
NA CCA00413 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS464066 936 + 0.396368
NA CCAA00003 virulence plasmid integrase pGP8-DSubName: Full=Virulence plasmid integrase pGP8-D; pCpGP1 CDS2622 1008 - 0.355159
NA CCA00509 DNA polymerase III, tau subunit, putativeSubName: Full=DNA polymerase III, tau subunit, putative; chromosome CDS580419 867 + 0.373702
ada CCA00145 DNA methyltransferaseSubName: Full=DNA methyltransferase; chromosome CDS153048 528 - 0.399621
dnaA-1 CCA00368 chromosomal replication initiator protein DnaARecName: Full=Chromosomal replication initiator protein DnaA 1; chromosome CDS419450 1353 - 0.364375
dnaA-2 CCA00473 chromosomal replication initiator protein DnaARecName: Full=Chromosomal replication initiator protein DnaA 2; chromosome CDS535600 1383 + 0.391179
dnaB CCA00124 replicative DNA helicaseSubName: Full=Replicative DNA helicase; chromosome CDS128334 1419 - 0.397463
dnaE CCA00073 DNA polymerase III, alpha subunitSubName: Full=DNA polymerase III, alpha subunit; chromosome CDS88015 3729 - 0.389917
dnaG CCA00828 DNA primaseRecName: Full=DNA primase; EC=2.7.7.-; chromosome CDS951380 1776 - 0.392455
dnaN CCA00445 DNA polymerase III, beta chainRecName: Full=DNA polymerase III subunit beta; EC=2.7.7.7; chromosome CDS503895 1101 - 0.390554
dnaQ-1 CCA00085 DNA polymerase III, epsilon chainSubName: Full=DNA polymerase III, epsilon chain; chromosome CDS100477 750 + 0.373333
dnaQ-2 CCA00384 DNA polymerase III, epsilon chainSubName: Full=DNA polymerase III, epsilon chain; chromosome CDS434630 687 - 0.391557
dnaZ CCA00331 DNA polymerase III, gamma subunitSubName: Full=DNA polymerase III, gamma subunit; chromosome CDS383557 1341 - 0.395227
gyrA CCA00507 DNA gyrase, subunit ARecName: Full=DNA gyrase subunit A; EC=5.99.1.3; chromosome CDS577301 2493 + 0.401123
gyrB CCA00506 DNA gyrase, subunit BRecName: Full=DNA gyrase subunit B; EC=5.99.1.3; chromosome CDS574865 2421 + 0.394052
helZ CCA00918 helicase, Snf2 familySubName: Full=Helicase, Snf2 family; chromosome CDS1060798 3501 - 0.387889
incA CCA00550 inclusion membrane protein ASubName: Full=Inclusion membrane protein A; chromosome CDS622621 1068 - 0.411985
ligA CCA00617 DNA ligaseRecName: Full=DNA ligase; EC=6.5.1.2; AltName: Full=Polydeoxyribonucleotide synthase [NAD(+)]; chromosome CDS706045 1989 - 0.415787
mfd CCA00877 transcription-repair coupling factorRecName: Full=Transcription-repair-coupling factor; Short=TRCF; EC=3.6.4.-; chromosome CDS1002691 3258 + 0.38674
mutL CCA00951 DNA mismatch repair protein mutLRecName: Full=DNA mismatch repair protein MutL; chromosome CDS1102511 1743 - 0.423408
mutS CCA00829 DNA mismatch repair protein MutSRecName: Full=DNA mismatch repair protein MutS; chromosome CDS953458 2481 + 0.399839
mutY CCA00392 adenine glycosylaseSubName: Full=Adenine glycosylase; chromosome CDS444619 1110 + 0.392793
nfo CCA00012 endonuclease IVRecName: Full=Probable endonuclease 4; EC=3.1.21.2; AltName: Full=Endodeoxyribonuclease IV; AltName: Full=Endonuclease IV; chromosome CDS17659 870 - 0.409195
nth CCA00929 endonuclease IIIRecName: Full=Endonuclease III; EC=4.2.99.18; AltName: Full=DNA-(apurinic or apyrimidinic site) lyase; chromosome CDS1078324 645 + 0.396899
pcrA CCA00985 ATP-dependent helicase PcrASubName: Full=ATP-dependent helicase PcrA; chromosome CDS1143095 1914 + 0.377743
pkn5 CCA00039 serine/threonine-protein kinaseSubName: Full=Serine/threonine-protein kinase; chromosome CDS47847 1506 + 0.384462
polA CCA00128 DNA polymerase ISubName: Full=DNA polymerase I; chromosome CDS133923 2610 + 0.381609
priA CCA00845 primosomal protein N'SubName: Full=Primosomal protein N; chromosome CDS966215 2250 + 0.408
recA CCA00995 recA proteinRecName: Full=Protein RecA; AltName: Full=Recombinase A; chromosome CDS1155893 1053 + 0.416904
recB CCA00007 exodeoxyribonuclease V, beta subunitSubName: Full=Exodeoxyribonuclease V, beta subunit; chromosome CDS7821 3138 - 0.365519
recC CCA00008 exodeoxyribonuclease V, gamma subunitSubName: Full=Exodeoxyribonuclease V, gamma subunit; chromosome CDS10945 3066 - 0.368885
recD CCA01005 exodeoxyribonuclease V, alpha subunitSubName: Full=Exodeoxyribonuclease V, alpha subunit; chromosome CDS1165264 1506 - 0.373838
recF CCA00444 recF proteinRecName: Full=DNA replication and repair protein RecF; chromosome CDS502792 1104 - 0.361413
recJ CCA00179 single-stranded-DNA-specific exonuclease RecJSubName: Full=Single-stranded-DNA-specific exonuclease RecJ; chromosome CDS190778 1773 + 0.415116
recR CCA00483 recombination protein RecRRecName: Full=Recombination protein RecR; chromosome CDS548848 603 - 0.371476
rnhB CCA00654 ribonuclease HIIRecName: Full=Ribonuclease HII; Short=RNase HII; EC=3.1.26.4; chromosome CDS747070 639 - 0.395931
rnhC CCA00293 ribonuclease HIIIRecName: Full=Ribonuclease HIII; Short=RNase HIII; EC=3.1.26.4; chromosome CDS341067 903 - 0.400886
ruvA CCA00120 Holliday junction DNA helicase RuvARecName: Full=Holliday junction ATP-dependent DNA helicase RuvA; EC=3.6.4.12; chromosome CDS124286 624 + 0.383013
ruvB CCA00406 Holliday junction DNA helicase RuvBRecName: Full=Holliday junction ATP-dependent DNA helicase RuvB; EC=3.6.4.12; chromosome CDS456177 1014 + 0.406312
ruvC CCA00119 crossover junction endodeoxyribonuclease RuvCRecName: Full=Crossover junction endodeoxyribonuclease RuvC; EC=3.1.22.4; AltName: Full=Holliday junction nuclease RuvC; AltName: Full=Holliday junction resolvase RuvC; chromosome CDS123780 507 + 0.38856
ssb CCA00410 single-strand binding proteinRecName: Full=Single-stranded DNA-binding protein; Short=SSB; chromosome CDS461294 486 + 0.397119
topA CCA00988 DNA topoisomerase IRecName: Full=DNA topoisomerase 1; EC=5.99.1.2; AltName: Full=DNA topoisomerase I; chromosome CDS1147744 2586 + 0.404099
ung CCA00984 uracil-DNA glycosylaseRecName: Full=Uracil-DNA glycosylase; Short=UDG; EC=3.2.2.27; chromosome CDS1142295 690 - 0.424638
uvrA CCA00676 excinuclease ABC, subunit ASubName: Full=Excinuclease ABC, subunit A; chromosome CDS773526 5421 + 0.400111
uvrB CCA00962 excinuclease ABC, subunit BRecName: Full=UvrABC system protein B; Short=Protein UvrB; AltName: Full=Excinuclease ABC subunit B; chromosome CDS1114741 1971 + 0.397768
uvrC CCA00830 excinuclease ABC, subunit CRecName: Full=UvrABC system protein C; Short=Protein UvrC; AltName: Full=Excinuclease ABC subunit C; chromosome CDS955942 1818 + 0.383938
xerD CCA00737 integrase/recombinase XerDRecName: Full=Tyrosine recombinase XerD; chromosome CDS843715 897 + 0.437012
xseA CCA00307 exodeoxyribonuclease, large subunitRecName: Full=Exodeoxyribonuclease 7 large subunit; EC=3.1.11.6; AltName: Full=Exodeoxyribonuclease VII large subunit; Short=Exonuclease VII large subunit; chromosome CDS357433 1668 - 0.401679
xseB CCA00306 exodeoxyribonuclease VII, small subunitRecName: Full=Exodeoxyribonuclease 7 small subunit; EC=3.1.11.6; AltName: Full=Exodeoxyribonuclease VII small subunit; Short=Exonuclease VII small subunit; chromosome CDS357202 228 - 0.381579