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2024-05-02 19:25:09

Gene list

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COG category: Replication, recombination and repair
Organism: Rhodoferax ferrireducens DSM 15236, DSM 15236

Number of genes found: 149

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Rhodoferax ferrireducens DSM 15236, DSM 15236
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA Rfer_3043 metallophosphoesterasechromosome CDS3369643 1143 - 0.635171
NA Rfer_3040 DNA helicase related proteinchromosome CDS3357208 6669 + 0.630379
NA Rfer_2002 Ribonuclease Hchromosome CDS2158121 624 + 0.637821
NA Rfer_3688 ATP-dependent DNA helicase RecGchromosome CDS4106480 2244 - 0.635027
NA Rfer_1367 type III restriction enzyme, res subunitchromosome CDS1472554 3870 + 0.601809
NA Rfer_3640 Integrasechromosome CDS4056678 1032 - 0.579457
NA Rfer_0760 DNA polymerase III, delta subunitchromosome CDS794734 1065 + 0.646948
NA Rfer_0003 DNA gyrase, B subunitchromosome CDS2723 2613 + 0.598163
NA Rfer_1365 N-6 DNA methylasechromosome CDS1469159 2094 + 0.58596
NA Rfer_2261 phage integrasechromosome CDS2473778 1062 + 0.62806
NA Rfer_1749 RelB antitoxinchromosome CDS1885464 333 + 0.522523
NA Rfer_1273 NUDIX hydrolasechromosome CDS1365838 642 - 0.598131
NA Rfer_3071 conserved hypothetical proteinchromosome CDS3396620 1509 + 0.60835
NA Rfer_1053 hypothetical proteinchromosome CDS1116648 1359 - 0.462104
NA Rfer_4078 conserved hypothetical proteinchromosome CDS4546817 414 - 0.560386
NA Rfer_1342 integration host factor, alpha subunitchromosome CDS1446487 309 + 0.530744
NA Rfer_1202 UvrD/REP helicasechromosome CDS1286596 3339 - 0.589398
NA Rfer_3873 protein of unknown function UPF0102chromosome CDS4325632 387 + 0.620155
NA Rfer_2194 putative primosomal replication proteinchromosome CDS2395747 300 + 0.513333
NA Rfer_2353 DNA-directed DNA polymerasechromosome CDS2588872 1242 + 0.613527
NA Rfer_0028 type I site-specific deoxyribonuclease, HsdR familychromosome CDS29673 3141 - 0.617319
NA Rfer_2203 DNA primasechromosome CDS2408035 1878 - 0.599574
NA Rfer_1656 formamidopyrimidine-DNA glycosylasechromosome CDS1787588 816 - 0.585784
NA Rfer_0820 Holliday junction DNA helicase RuvBchromosome CDS854163 1077 - 0.623955
NA Rfer_1298 NUDIX hydrolasechromosome CDS1392923 513 + 0.575049
NA Rfer_2654 Tyrosine recombinase XerDchromosome CDS2919083 921 - 0.612378
NA Rfer_1413 DEAD/DEAH box helicase-likechromosome CDS1521515 1872 + 0.600962
NA Rfer_1459 recombination protein RecRchromosome CDS1569292 591 + 0.629442
NA Rfer_1668 conserved hypothetical protein 95chromosome CDS1799121 663 - 0.631976
NA Rfer_1350 HhH-GPDchromosome CDS1453415 651 + 0.582181
NA Rfer_1571 DNA gyrase, A subunitchromosome CDS1698030 2643 - 0.606886
NA Rfer_2519 Transposase and inactivated derivatives-likechromosome CDS2780434 630 + 0.595238
NA Rfer_1920 conserved hypothetical proteinchromosome CDS2061886 552 - 0.539855
NA Rfer_3814 excinuclease ABC, A subunitchromosome CDS4252867 6297 - 0.637288
NA Rfer_2433 transposase, IS4chromosome CDS2680692 453 - 0.558499
NA Rfer_2511 Chromosomal replication initiator, DnaAchromosome CDS2773429 687 - 0.598253
NA Rfer_2276 transposase, IS4chromosome CDS2497124 972 - 0.593621
NA Rfer_2897 conserved hypothetical proteinchromosome CDS3204588 2541 - 0.674931
NA Rfer_2040 DNA polymerase III, alpha subunitchromosome CDS2204468 3558 + 0.61692
NA Rfer_2572 DNA polymerase III, epsilon subunitchromosome CDS2832943 1431 + 0.6471
NA Rfer_0331 Protocatechuate 4,5-dioxygenasechromosome CDS330166 444 - 0.605856
NA Rfer_3777 DNA polymerase III, epsilon subunitchromosome CDS4220151 2169 - 0.610881
NA Rfer_0001 chromosomal replication initiator protein DnaAchromosome CDS7 1413 + 0.530786
NA Rfer_2256 DNA-directed DNA polymerasechromosome CDS2469576 1011 + 0.63996
NA Rfer_1173 transposase IS3/IS911chromosome CDS1257378 405 - 0.607407
NA Rfer_0459 ATP-dependent DNA helicase RecQchromosome CDS468409 1857 - 0.635972
NA Rfer_1376 Deoxyribodipyrimidine photolyasechromosome CDS1488606 1479 - 0.591616
NA Rfer_3862 DNA processing protein DprA, putativechromosome CDS4311509 1230 + 0.656911
NA Rfer_2908 NUDIX hydrolasechromosome CDS3216877 480 - 0.597917
NA Rfer_4006 N-6 DNA methylasechromosome CDS4468511 1545 + 0.59288
NA Rfer_2183 DNA polymerase III, epsilon subunitchromosome CDS2381029 702 + 0.547009
NA Rfer_3948 recA proteinchromosome CDS4415106 1155 - 0.607792
NA Rfer_1378 Holliday junction resolvase YqgFchromosome CDS1490717 471 + 0.611465
NA Rfer_0012 putative exonuclease, RdgCchromosome CDS13460 912 + 0.618421
NA Rfer_4007 Restriction endonuclease S subunits-likechromosome CDS4470052 1239 + 0.518967
NA Rfer_3221 TatD-related deoxyribonucleasechromosome CDS3568431 852 - 0.620892
NA Rfer_2709 transposase IS3/IS911chromosome CDS2982244 405 + 0.617284
NA Rfer_1581 helix-turn-helix, Fis-typechromosome CDS1711934 237 + 0.540084
NA Rfer_3035 UvrD/REP helicasechromosome CDS3349544 2445 - 0.605726
NA Rfer_3600 uracil-DNA glycosylasechromosome CDS4011327 753 - 0.666667
NA Rfer_0739 Holliday junction DNA helicase RuvAchromosome CDS778458 573 + 0.631763
NA Rfer_2175 excinuclease ABC, B subunitchromosome CDS2373430 2133 + 0.574777
NA Rfer_2896 UvrD/REP helicasechromosome CDS3200700 3498 - 0.655803
NA Rfer_1366 putative type I site-specific restriction-modification system, S subunitchromosome CDS1471267 1269 + 0.526399
NA Rfer_1331 transcription-repair coupling factorchromosome CDS1430013 3528 - 0.63237
NA Rfer_1138 transposase, IS4chromosome CDS1223382 1170 + 0.552137
NA Rfer_2072 Exodeoxyribonuclease Ichromosome CDS2246995 1458 + 0.628944
NA Rfer_1819 restriction endonucleasechromosome CDS1952849 927 - 0.62891
NA Rfer_1171 transposase IS116/IS110/IS902chromosome CDS1255466 1140 + 0.631579
NA Rfer_2244 excinuclease ABC, C subunitchromosome CDS2457472 2016 + 0.612103
NA Rfer_0002 DNA polymerase III, beta subunitchromosome CDS1515 1104 + 0.555254
NA Rfer_3906 CRISPR-associated protein Cas4chromosome CDS4363252 639 + 0.625978
NA Rfer_4005 conserved hypothetical proteinchromosome CDS4466630 1833 + 0.621386
NA Rfer_1751 DNA repair protein RecOchromosome CDS1886103 756 + 0.621693
NA Rfer_0779 putative RNA methylasechromosome CDS816056 1287 + 0.644134
NA Rfer_1406 NUDIX hydrolasechromosome CDS1515224 702 + 0.608262
NA Rfer_3442 phage integrasechromosome CDS3831381 1014 - 0.668639
NA Rfer_1507 NUDIX hydrolasechromosome CDS1621299 606 + 0.557756
NA Rfer_0822 primosomal protein N'chromosome CDS856890 2202 + 0.650318
NA Rfer_3477 5'-3' exonucleasechromosome CDS3868908 813 + 0.564576
NA Rfer_3001 methylated-DNA--protein-cysteinemethyltransferasechromosome CDS3309298 534 + 0.631086
NA Rfer_2117 DNA polymerase III chi subunit, HolCchromosome CDS2294285 435 + 0.57931
NA Rfer_3929 exodeoxyribonuclease IIIchromosome CDS4387758 792 + 0.57702
NA Rfer_0032 N-6 DNA methylasechromosome CDS36476 1635 - 0.595107
NA Rfer_3417 crossover junction endodeoxyribonuclease RuvCchromosome CDS3800714 549 - 0.663024
NA Rfer_2316 Helicase c2chromosome CDS2539165 2013 - 0.588674
NA Rfer_1196 phage integrasechromosome CDS1281736 876 - 0.594749
NA Rfer_3579 DEAD/DEAH box helicase-likechromosome CDS3981305 1266 - 0.638231
NA Rfer_2877 Exonuclease VII, small subunitchromosome CDS3179737 288 - 0.552083
NA Rfer_2580 replicative DNA helicasechromosome CDS2839429 1407 - 0.612651
NA Rfer_3931 SNF2-relatedchromosome CDS4389552 3537 - 0.65253
NA Rfer_1832 DNA mismatch repair protein MutSchromosome CDS1969677 2649 - 0.634202
NA Rfer_2248 histone-like DNA-binding proteinchromosome CDS2462319 339 + 0.489676
NA Rfer_1190 Integrasechromosome CDS1275731 1161 + 0.55211
NA Rfer_0829 PHP-likechromosome CDS865566 1743 - 0.634538
NA Rfer_1565 histone-like DNA-binding proteinchromosome CDS1690646 312 - 0.567308
NA Rfer_3234 single-stranded-DNA-specific exonuclease RecJchromosome CDS3582403 1731 + 0.650491
NA Rfer_3755 NUDIX hydrolasechromosome CDS4188773 474 + 0.628692
NA Rfer_1354 phage integrasechromosome CDS1457772 1215 + 0.618107
NA Rfer_0187 phage SPO1 DNA polymerase-related proteinchromosome CDS185215 891 - 0.683502
NA Rfer_1060 restriction modification system DNA specificity domainchromosome CDS1128342 1194 + 0.5201
NA Rfer_1306 nuclease (SNase-like)chromosome CDS1399362 528 + 0.61553
NA Rfer_4129 Uracil-DNA glycosylase superfamilychromosome CDS4604916 606 - 0.633663
NA Rfer_1652 DNA repair protein RecNchromosome CDS1781959 1677 + 0.632677
NA Rfer_1062 type III restriction enzyme, res subunitchromosome CDS1131262 3417 + 0.589991
NA Rfer_2201 DNA ligase, NAD-dependentchromosome CDS2405385 2073 + 0.63097
NA Rfer_4203 Integrasechromosome CDS4673315 1161 - 0.552972
NA Rfer_1704 methylated-DNA--protein-cysteinemethyltransferasechromosome CDS1835471 573 - 0.661431
NA Rfer_2932 protein of unknown function DUF1568chromosome CDS3242738 705 + 0.598582
NA Rfer_1225 conserved hypothetical proteinchromosome CDS1312114 750 + 0.717333
NA Rfer_2641 DNA gyrase/topoisomerase IV, subunit Achromosome CDS2904575 2391 - 0.630698
NA Rfer_3061 transposase IS3/IS911chromosome CDS3384223 405 - 0.607407
NA Rfer_3028 DEAD/DEAH box helicase-likechromosome CDS3342906 1521 - 0.604865
NA Rfer_4010 type I site-specific deoxyribonuclease, HsdR familychromosome CDS4473039 3204 + 0.55618
NA Rfer_2266 transposase IS116/IS110/IS902chromosome CDS2483257 855 + 0.539181
NA Rfer_3152 exodeoxyribonuclease VII, large subunitchromosome CDS3488970 1419 - 0.641297
NA Rfer_2607 endonuclease IIIchromosome CDS2871652 654 + 0.633027
NA Rfer_2169 DEAD/DEAH box helicase-likechromosome CDS2364147 1725 - 0.633623
NA Rfer_2642 DNA topoisomerase (ATP-hydrolyzing)chromosome CDS2907070 1971 - 0.621512
NA Rfer_2033 Helicase c2chromosome CDS2195024 2151 + 0.654114
NA Rfer_2106 ATP-dependent helicase HrpAchromosome CDS2279307 3897 + 0.615345
NA Rfer_1043 hypothetical proteinchromosome CDS1104465 330 - 0.593939
NA Rfer_1325 DNA polymerase Ichromosome CDS1420985 2874 + 0.61517
NA Rfer_1822 DNA adenine methylasechromosome CDS1957190 822 - 0.419708
NA Rfer_3039 phage integrasechromosome CDS3355229 1020 + 0.553922
NA Rfer_3450 hypothetical proteinchromosome CDS3839198 351 + 0.552707
NA Rfer_2258 TatD-related deoxyribonucleasechromosome CDS2471048 795 + 0.597484
NA Rfer_0030 restriction modification system DNA specificity domainchromosome CDS33956 1344 - 0.535714
NA Rfer_1436 ATP dependent DNA ligasechromosome CDS1549682 897 + 0.625418
NA Rfer_3077 DNA-cytosine methyltransferasechromosome CDS3405240 1554 - 0.53668
NA Rfer_2830 phage integrasechromosome CDS3130189 1239 + 0.585956
NA Rfer_2983 exodeoxyribonuclease IIIchromosome CDS3290508 825 - 0.597576
NA Rfer_0407 ATP-dependent DNA helicase, RecQ familychromosome CDS413213 1962 - 0.631498
NA Rfer_1464 ribonuclease Hchromosome CDS1574165 450 + 0.602222
NA Rfer_1654 A/G-specific adenine glycosylasechromosome CDS1784507 1035 - 0.610628
NA Rfer_3252 DNA repair protein RadCchromosome CDS3605889 705 + 0.642553
NA Rfer_1434 HNH endonucleasechromosome CDS1546525 558 + 0.587814
NA Rfer_3772 single-strand binding proteinchromosome CDS4212095 504 - 0.589286
NA Rfer_1227 DNA polymerase III, alpha subunitchromosome CDS1314126 3255 + 0.656528
NA Rfer_3577 DEAD/DEAH box helicase-likechromosome CDS3979493 1422 + 0.627286
NA Rfer_1059 N-6 DNA methylasechromosome CDS1126795 1551 + 0.60735
NA Rfer_3774 excinuclease ABC, A subunitchromosome CDS4214052 3159 + 0.634378
NA Rfer_3955 DNA topoisomerase IIIchromosome CDS4421236 3054 + 0.621153
NA Rfer_3176 AAA ATPasechromosome CDS3512906 1308 - 0.632263
NA Rfer_4202 IstB-like ATP-binding proteinchromosome CDS4672081 834 + 0.559952
NA Rfer_1457 DNA polymerase III, subunits gamma and tauchromosome CDS1566918 1944 + 0.62037
NA Rfer_3216 conserved hypothetical proteinchromosome CDS3563804 543 - 0.61326
NA Rfer_0942 transposase, IS4chromosome CDS992368 969 - 0.572755
NA Rfer_3308 DNA mismatch repair protein MutLchromosome CDS3670957 1995 + 0.667168