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# Rhodopseudomonas palustris HaA2, HaA2

>RPB_0088 SNase-like nuclease
MSPLFRTNPVRIARLPWRGRLRSIWPWVFVLGVAAGMMLPARHWVQWPWA
EPDSQALRNDSETVWRRAGNPAVRHPVDVLYIIDGDTFEARVHLWPGTDL
ATRVRLRGIDAPELKAQCAQELKLAEAATGALRDLLRQGEVAIYNIGPDK
YQGRVVADVATKRTPSVSAALLEAGYARAYGSGRREGWCGGR
>RPB_2682 TatD-related deoxyribonuclease
MPMLVDSHCHLDFPDFADDLAGIVARAEASGVGRMVTISTRVKRLPDLLA
IAERFPNVYCSVGTHPHHVDEEDGISADELVKLAQHPKVVAFGEAGLDYF
YEHGSRDAQERGFRTHIAAARETGLPLVIHTREADENCGRILENEMAKGA
FRAVLHCYTGGRDLALQAIDLGLLIGFTGILTFKKSQALRDLAAELPADR
VLVETDAPYLAPGKYRGKRNEPAYVVETAKVLAEVRGVTPDEIARQTTAN
FFNLFGKVPPPDVAA
>RPB_4272 crossover junction endodeoxyribonuclease RuvC
MGGDDPVVQTVSVSFTSIWRYHCAMSLPPIRTAVRILGIDPGLRRTGWGV
VESDGNRLVFVACGSVEPKDTLTLAERLLAIHHGLEKVLAEFAPAEAAVE
QTFVNKDGAATLKLGQARGVAMLAPAMHGILVAEYAPNQVKKTVVGAGHA
DKVQIQMMLKILLPKADPRTADAADALAIAITHAHHRVAAQRLRAVGG
>RPB_0005 DNA gyrase, B subunit
MTEPARQPIAETPSPVPAEYGAESIRVLKGLDAVRKRPGMYIGDTDDGSG
LHHMVYEVVDNAIDEALAGHATAVEVVLNADGSVTVRDDGRGIPVDIHKG
EGISAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVSVVNALSSKLVLRVW
RNGKEHIIEFAHGDAVAPLSVVGDANGRRGTEVTFFASPETFTHIEYDFA
TLEHRLRELAFLNSGVNIVLSDMRHPVEKREEMRYEGGVTEFVKYLDRNK
KPMVPAPIVLAADLNGIGVEAALWWNETYHENVLCFTNNIPQRDGGTHLA
GFRAALTRQVNGYADSNAKKEKIALTGDDCREGLTAVLSVKVPDPKFSSQ
TKDKLVSSEVRPVVENVLNEALAAWFEEHPAEAKVIVGKVIEAAAAREAA
RKARELTRRKGALDIASLPGKLADCQERDPSKSELFIVEGDSAGGSAKQG
RNREFQAVLPLRGKILNVERARFDKMLGSEQIGTLITALGTGIGRDDFDI
AKLRYHKIILMTDADVDGAHIRTLLLTFFFRQMPALIEGGFLYIAQPPLY
KVTRGKSEQYLKDERALEEYLIATGLDDCAFKIASGEVRGGRDLLALVED
ARVIRQTLHNLHGRYNRSVVEQAAIAGVLSPRITSDVATANEAAAYIARR
LDALADEVERGWIGRFVEGEGFHFERTVRGVKDVAMIDDALLGSADARKL
DEYAAVLQEVYPRPGVLRRKDAETAIHGPVSLFEAVTDAGRKGVALQRYK
GLGEMNPSQLWETTLDTNARSLLQVKVREVDEADDIFTKLMGDVVEPRRE
FIQENSLSATVDV
>RPB_2852 DEAD/DEAH box helicase
MSARRGALQLAQNASKAAGHIRPNRAGPMRPALLNPLFAPVTGLTGVGPK
QDKLFRYLLDRDDTPRLADLLLHLPVSVIDRRSRPKIRDAQPGTVVTLEV
TVDRHRPPPPGRSRAPYLVYASDETGDVILTFFRAKPEFVEKLLPVGAKR
YVSGTGQLYDGTLQIVHPDRVVDEEGFAKLPKIDPVYPLTEGLAIGSLRR
AVAQALTRLPALPEWISPEVLRRCSFPAFAEALQRVHIPHEPTDILPDGP
FWSRLAYDELLAGQLALALVRAQLRRPAGTRNAGDGRLRHKIIDALPYAL
TASQQAAAAAIAEDLQQPVRMLRLLQGDVGSGKTVVALLAAAAVAEAGKQ
AALMAPTEILARQHIKTIAPLAERAGMQVAILTGREKGKERRDLLARLEA
GEIDFLVGTHALIQDDVTYNSLALAVVDEQHRFGVRERLALTSKGDAVDV
LVLSATPIPRTLVLTYFGDMDVSELREKPAGRQPIDTRALSDTRLPEVID
GIGRAIAAGKRVYWICPLVEESENVKLTDAEQRYESLRQRFGDQQVGLVH
GRMKGADKDRVMAQFAGGEISVLVATTVVEVGVDVPEASIMVIENAERFG
LAQLHQLRGRIGRGSEASTCLLLYKEPLGEMSAARLRVIRETADGFRIAE
EDLKLRGEGDVLGTRQSGLPGYRIARSEVHGQLITQARDEALRILEDNPK
LEGPSGEALRCLLYLYERDEAIPLLGAG
>RPB_2651 integration host factor, alpha subunit
MTGTGRTVTRVDLCEAVYQKVGLSRTESSAFVELVLKEITDCLEKGETVK
LSSFGSFLVRQKGQRIGRNPKTGTEVPISPRRVMVFKPSAILKQRINANG
TASSMSSSANAAAGDKSESASGT
>RPB_0398 DNA polymerase III, epsilon subunit
MREIVLDTETTGLDPLRGDRLVEIGCVEIYNRMPTGQVYHQYINPERDMP
AEAFAVHGLSSEFLADKPVFAQVADAFIDFIGDAPLVIHNASFDIGFINA
ELARLSRAAIPRERLVDTLLLARRKHPGVSNRLDDLCSRYAIDNSRRTKH
GALLDAELLAEVYIDLIGARQSQLILAEVPSERSGAGGDTPRRQRSIALT
PRVTDADLEAHRAFIALMGDKAIWNEYTAAA
>RPB_1116 DNA-3-methyladenine glycosylase I
MSGARMHADGLARCPWPGDDPLYVAYHDTEWGVPEYDDRALFEKLILDGF
QAGLSWITILRKRDNFRRAFDDFDPARIARYDAAKVQALMNDVGIVRNRA
KIDGAIGSAKAWLTIQEEGPGFSKLLWDHVGGAPKVNAFKTTLSVPASTP
LSVKISKDLSARGFKFVGPTIVYAFMQAVGMVNDHLVDCHCHDRCGAAKR
PARRSAAPARTIAQRQR
>RPB_2701 UvrD/REP helicase
MSLPATYLDGLNPEQRCAVEHGVGQSSCPPLLVIAGAGSGKTNTLAHRVA
HLVVNGADPHRILLMTFSRRAAAEMTRRVERIARRVMGDGAARGGALSWA
GTFHGIGARLLREHAERIGLDPAFTIHDREDSADLMNLVRHDLGFSRTES
RFPTKATCLSIYSRCVNAGQSLDVVLGANYPWCAGWSAELKQLFAGYVEA
KQRHNVLDYDDLLLYWAQTMTEPSLAAEIGGRFDHVLVDEYQDTNALQAQ
VLLGLKPDGGGLTVVGDDAQSIYSFRAATVRNILDFPKAFSPPARIVTLD
RNYRSTQAILGAANGVIDLAAERFTKNLWTDRASGSPPQLVAVRDEADQA
RYITERVLEHRESGTILKQQAVLFRTSSHSAPLELELTRRNIPFVKFGGL
KFLDAAHVKDMLALLRFVQNPRDRVAGFRVLLLMQGIGPASAQKTLDAIT
AAADPLKALAALPAPPRAPDWRDFVDAVGELRDGRAGGWPAEIERARLWY
EPHLDRIHDDAATRRADLVQLAQIASGYPSRERFLTELTLDPPDATSDQA
GVPMRDEDYLILSTIHSAKGQEWKSVFVLNVVDGCMPSDLGTGTSAEIEE
ERRLLYVAMTRAKDDLHLVVPQRFFTHGQNVMGDRHVYAARSRFIPDRLL
NLFERVSWPRVAASPGYPTRQAPPIDIGARMRGMWR
>RPB_0364 conserved hypothetical protein
MRPLNLRHLTLAPLAAALAFGLLASGPVMAQGTQTAPAADKMAPPAATKT
SPTAGAKTELLDINTATADQLDALPGVGKAYSAAIIKGRPYKAKDELVYK
KILPEKTYEGIKDKIIAKHKS
>RPB_0420 Protein of unknown function UPF0102
MAKTKHPPAPDRVAAFQTGISAETRAAAYLMAKGYRILARRFKTPCGEID
IVAQRRQLIAFVEVKARARLDDAAYAVTPRQQQRIIAAAEAWLMANPDHA
TFELRFDAVLVAPKRLPQHLPAAFDASP
>RPB_2008 DNA ligase, NAD-dependent
MTKAPKPAPDIATLTKAKAKVEAMRLRLEIERHNSAYYQHDAPTVSDAEY
DALRRRLEAIEAKFPELVSASSPTQTVGAAPARGFAKVQHAVPMLSLGNA
FADDEVTEFVERVQRFLRLDAVPSIVAEPKIDGLSLSLRYEHGELMRAAT
RGDGFTGEDVTANVRTIADIPTTLKAKTIPAACELRGEVYMLKQDFLALN
KRQEEAGDTVFANPRNSAAGSLRQKDVAITASRPLKFFAYAWGEMSDYPM
DEPTQFKMLGWLKQAGFVVNPEITLCTSVDDALAFYRRIGEQRAALPYDI
DGVVYKVDRLDYQERLGFVSRSPRWAIAHKFAAEQATTVLEKIDIQVGRT
GALTPVARLQPVTVGGVVVQNATLHNEDYIKGLGNDGSPLRDGVDIREGD
TVVVQRAGDVIPQIVSVVLDKRPADATPYHFPHKCPVCGSHAAREEGEAV
WRCTGALICPAQAVERLKHFVSRLAFDIDGLGEKQIVLFHERGWVKEPAD
IFTLQARNAALKLEDIEGYGETSVRNLFAAIDARRTIELHRLIFALGIRH
VGEGNAKLLARHYGTLDAFLAAMRAAAEGQTEEGNTSEAYQDLDNIAGIG
EVVAAAVVEFFAEPRNVAALDALLAELKDVLPAEQARRDTAVAGKTVVFT
GSLTKFTRDEAKAAAERLGAKVAGSVSKKTDYVVAGADAGSKLTKAKDLG
VAVLTEDEWLALIS
>RPB_0049 conserved hypothetical protein
MGIVFDAIGKVIAGYLQKEEPGYEPFTPSDPDHLRTIMQPGDVLLVEGNA
RISGIIKYLTQSTWSHAALYVGPIDGAAEPDGEPHVLIEANIGEGVSSSP
LSRHLNYHTRICRPVGLSHEDRHTVCRYAINRIGFGYDTKNIIDLMRYLV
PMPVPQRWRRRMIALGSGDPTKIICSALIAQAFDAVRYPILPKITKAGSR
AARREILHIRDSSLYMPRDFDISPYFEVVKPTIVNGFDYTALHWADKQKP
LAEVAGPFSTFQDGLDPAPPLVPAPADAEAAACDAQVMDTALHHQAPAPT
PAREPAN
>RPB_1876 ATP dependent DNA ligase, central
MAASKTLTLYRNKRDFEQTAEPRGDAEVVPSKRRRFVIQKHDATRLHYDL
RLEYDGVFKSWAVTRGPSLDPRDKRLAVEVEDHPLDYGDFEGTIPKGQYG
GGTVQLWDRGYWDCDDPERGFKTGDLKFTLDGEKVHGSWVLVRMRHDRNG
GKRTNWLLIKHRDDDAREGKANDILDEDRSVASGRTMKQIAEGKGRAPKP
FMTGKVARVKADAVWDSNKGLAADARAADDAGKAARPKRAAAKKAPKKAA
AKSRTTKTTSRATRKPVKVAAMPDFIPPQLCTSVERPPGSDGWRHEIKFD
GYRMQLRIAHGEAALRTRKGLDWTAKFRAIADEAAGLPDAIIDTEIVALD
HHGHPDFAALQAALSDGDSDKLICFAFDLLYADGEDLRSLPLSERKQRLQ
DLLKAARGRRKEGLIRYVEHFETGGDAILQSACKLSLEGIVSKKLDAPYR
SGRSDNWTKAKCRAGHEVVIGGWKTTAGKFRSLMVGVQSDDRAGNHHLAY
VGLVGTGFGQDVVKRILPELKARASKDNPFAGENAPRKTSDVNWVTPDLV
AEIEFAGFTGAGMVRQAAFKGLRADKPADEVVAEKPAQVGIARPKPKRGT
KAAPAVRKVASAASRAEVMGISISKPDKVLWPASEISEAITKLDLAHYYE
AVGDWLIAHIKGRPCSIVRAPDGIDGEHFFQRHAMPGMSNLIDLAKVSGD
RKPYVQIDRVEGLIAVAQIGGLELHPWNCAPGAYDVPGRLVFDLDPAPDV
GFDDVVAAAREMKDRLETIGLSTFCKTTGGKGLHVVVPLQPKDDVDWKQA
KIFAQTVCAQMADDSPERYLLNMSKQQRKGKIFLDYLRNDRMSTAVAALS
PRAREGATVSMPVTWSQVKAGLDPKRFTLGTVPALLRKTKAWADYDESAA
PLRAALEALASSGA
>RPB_2154 Transposase IS116/IS110/IS902
MTASPSSDNIFIGIDVGGASLDVAWHRGGRAHYANRPDAIAELVQRLVAG
PQLTRIAVEPTGGYEKPLVKALRQAGLPVEIVHTSRFAAYRTLIGQKAKS
DTSDARLLAAYAASPDEIRGRKSDHVELEENPVREALHECASRRDQLKQM
IHAESCRLATTRLAEIRQAIEQHLDMLRAEDKLLQQRMQTLLRQSADLIA
AQRLLTTIKGIGVTSATTLIAMVPELGRVDNKAAAALVGVAPFVRQSGTM
TAPARIRGGRAAVRHILYMAAVAASRHNKILRPFYERLIADGKPVKVALI
AVLRRLVVFANAVLRSGQPWKGASLT
>RPB_0923 Resolvase-like
MASGKFVSYLRVSTDKQGKSGLGIEAQREAVTSYLNGGRWTLEAEYVETE
SGRKSDRPKLAAALSHAKAIGARLVFAKLDRLTRNVDLLRSLVASEVELV
FCDLPTVPPGPMGKFLLTQMAAVAELEAGLISERTKKALAAAKARGVKLG
NPNGARALRGKQRGNAEAVARIKQKAAQRATDLRGIIQSFQRSGITSVRA
ITDELNRQGIRAPRGGDWHPTAVARLLNRLPKAA
>RPB_2876 DNA gyrase, A subunit
MSDKDDEKPGEPQAPSDIRPVSILDEMKRSYLDYAMSVIVARALPDARDG
LKPVHRRILFGMYENGFEWNKPYRKSARTVGDVIGKYHPHGDQSVYDAMV
RMAQDFSMRVPLIDGQGNFGSVDGDAPAAMRYTESRLTKIAQLLLDDLDK
DTVDYQDNYDGSFNEPQVLPAKFPNLLVNGAGGIAVGMATNIPPHNLGEV
IDACIALIDDPALSIDDLNVIIPGPDFPTGGIILGRAGIRLAYHTGRGSI
VMRGKVEIETVRKDREAIIISEIPYQVNKATMVERIADLVREKKIEGISD
LRDESDRDGFRVVIELRRDAVPDVVLNQLYRFTPLQTNFGANMVALDAGR
PQLMNLKDLLTLFVAFREQVVTRRTKYLLNKARDRAHILVGLAIAVANID
EIIRVIRNSPDPNTARETLMSRDWPAADVAAMITLIDDPRHKLNEDGTAR
LSFEQAKAILDLRLQRLTALGREEIAEELDKLALEIADYLDILRSRARVQ
TIVKDELIAVKTEFATPRKTVIIEQEGEVEDEDLIQREDMVVTVSHAGYV
KRVPLSTYRAQRRGGKGRSGMATREEDFVSRLFVASTHTPVLFFSSRGQV
YKEKVWRLPIAPPNGRGKALINILPLEQGERITTIMPLPEDEQSWAALDV
MFATTGGNVRRNKLSDFVDVRRSGIIAMKLDDGEAIVDVQICTERDDVLL
TTANGQCIRFPVSDQRDGKEFGVRVFQGRSSMGVRGIALAPEDKVISLSI
LRHLDAGSEERAAYLRRANAVRRGGVEERAAVEDEAAGVEGEDASVGAIE
LGEQRYVEMSASEQFVLTISENGYGKRTSSFEYRTTNRGGKGIVAMSVNN
RNGKLVASFPVEDSDQIMLVTDNGQLIRCPVEGIRVAGRSTQGVIVFDTA
DDEKVVSVEHIPEAEETENGNGNGG
>RPB_3332 NUDIX hydrolase
MSASAPVTIHRVTQLDLWVDDHVWPFAQTHRTKIDGYFAARQLEQPKLWN
GRVLMGRRPRFEGGRFSADYFETDFASFLCWREWEFPDLSVFNGFGMGVI
RSSDGAIVLGEMGAHTANAGKVYFAGGTPDPSDVRGKRLDIPASVAREVE
EETGLRRSDYRAADHWHCVEAGPYVAMLRLLDVYLPAEALQGRIEAHLAR
DALPEFSRVHLVRSEADFLPTMPRFVTAYLTMLLDGED
>RPB_2491 conserved hypothetical protein
MVVRVQPRQLALDLPHAESLSREDFLEGTANSSALRLIESWPDWPNRIML
LVGPEGSGKSHLASIWAEQAGARSTSAQALTAANVPGELATGALVVEDLT
PGSFDERALFHLINLAREDEAYVLITARLAPAAFPADLRDLRSRLRAVPV
VTLLPPDDALFRALIVKFCADRQMSIDANLVGYLANRIDRSFAAARQTVE
RLDTEALRLGRPVTRALAADVLRND
>RPB_4459 exodeoxyribonuclease VII, small subunit
MADAAPADVKKLSFERAMEELETIVKRLEDGKVPLEESVAIYERGEALKR
RCEELLRQAEARVDKITTDAQGQPVGTEPLDVQ
>RPB_0271 Phage integrase
MPGASGLLRFARNDGEDLVSVGIRHKHHMAKSQPMPPPIDLPCAAADLNA
EFTRWLSHLRAERRLSGKTLEAYARDLRQFLFFLAGHWGGEVTLGRFARL
ETTDVRAFMAARRGDAIAGRSLMRALAGLRSFGRFLEREGKGSVGALSAV
RAPKIKKSLPKPIQIAAAKRLADADERAGEDRETWVLVRDAAVMALLYGS
GLRISEALGLKRRDVPAPGKGDTLIVLGKGNKTRMVPVLDAVLAQIADYA
KACPHPLPPDGPMFVGARGGPLSPRIIQLAMERLRGALGLPDSATPHALR
HSFATHLLSRGGDLRAIQELLGHASLSTTQIYTGIDTERLLEVYASAHPR
A
>RPB_3564 conserved hypothetical protein
MVAAKRDNALVVVACDACATQGGLMPGMPLATARAMHPSLDVIDHDPHAD
AALLASVADWCDRFTPLVAFDGADGLLLDITGCAHLFGDEAELLRMLTTA
LTRQGFAVSAAIAGTAVAARALTRGAPGRIVAPGEEAAAVAPLPVAALGV
SEAIVRGLCRAGLTTIGDVLARQPSELAARFGEAFIAVLRQATGEDDAPI
SPRKPAPDYVVDKRFAEPVATTEVILPTLLALARLLIAAMERSGKGARQL
TASFFRSDGAVRSLVVEAGQPVTRVEVVQRLFAERLDALADPLDPGFGYD
LIRLAASRCVAIAEAQRGFDTTAHQAEDVALLADTLSARLGARRVVRYLP
QNTHIPERAALAVPVQHCPPDADDAPWPARADEPPLRPLRLLQPPEPIEV
LAGVPDGPPAQFTWRRVLHRVARAEGPERIAMEWWRAAEPGLTRDYFRIE
DESGTRFWLYRDGLYGREVMPQPDGGGQPRWYMHGLFA
>RPB_0505 ATP-dependent helicase HrpB
MPLPRSFDTPLPIDDALSDLAAALAANSTAVLVAPPGAGKTTRVPLALLD
APWLKGQKIIVLEPRRIAARASAERMARTLGERAGDTVGYRVRFGSKVSR
ATRIEVVTEGIFTRQILDDPELTGIGAVLFDEFHERSLDADLGLALARDA
QQGLREDLRILVMSATIDGARVGKLLGDAPVVESLGRAFPVETRYLGRRS
DAPMERQMAEAIAAALRSDSGSVLAFLPGAAEIRRTETMLRERVQDASIE
IVPLFGALDAAVQDRAIQPAPKGSRKVVLATSIAETSLTIEGVRIVVDCG
LSRVPRYEPDIGLTRLETVRASRAAVDQRRGRAGRIEPGICYRLWDEPQT
ASLPAYTQPEILSADLTSLLLDLAQWGVSDPATLAFLDPPPAPALKEARE
LLRELGALDADGRITDEGRSLRAMALPPRLARMIVDAARLDHGEEAAEIA
AILTERGLGGDSVDLDHRRDQFRRDRSQRATSARQMAERWASSPSPSRGG
WTAEGRPGGGSHERGARGTPTPNPSPQGGGESRRGSGQRTAQQADGDQFL
STGVLLSFAFPDRVAKNRGNGSFVLANGRGAMIEQTSALARAPYLAVAEL
TGTAAQGRILLAAPISLAEIEQHFAEQITDADEVSFDRAAMALRARRRRV
LHAITLSEAPRALTPSAETARVLAEGLVAAGLERLPWSKSLEQWRGRVMF
LRKAEGEPWPDLSDAALAEQREQWLVPALFDKIGLKEFSAGDLSDALMNL
LPWDLRARLEREAPTHFEAPTGSRLPIDYAAEQGPTIAVRLQELFGLTTH
PSVAGGKVPLVLELLSPAHRPVQVTRDLPGFWRGSYAAVRADLRGRYPRH
PWPEDPAGAPPTRRAKPKGT
>RPB_0002 DNA polymerase III, beta subunit
MKVTVERAQLLKSLGHVHRVVERRNTIPILGNVLVRAENAQLSLKATDLD
LEVTETLPAETATAGSTTVPAHMFYDIVRKLPDGSQIVLESDGDRSVLAI
RAGRSRFTLQTLPESDFPDLAAGEMSHSFSLTASDVKRLIDRTQFAISTE
ETRYYLNGIYLHTAGSAKDAKLRAVATDGHRLAQVDLTQPAGAAGMPGVI
VPRKTVGEVQRLIEDNDAEIGLELSVGKIRFTIGNVVLTSKLIDGTFPDY
GRVIPQNNDKELVVDKKDFEAAVDRVSTISSERGRAVKLALSAGKLVLSV
TNPDSGSATEELEVEYASDPLDIGFNSRYLLDIAAQIEGEVAVLRLADPG
SPTLIQDRDKKNALYVLMPMRV
>RPB_0029 NUDIX hydrolase
MTKSIKLLLVVAVALIDADNRVLIAQRPKHKQLGGLWEFPGGKVDPGERP
EAALIRELDEELGITVKEACLAPLTFASHAYEDFHLLMPLYVCRRWDGQV
MPREGQELAWVRANKLRDYPMPPADIPLIPPLIELLM
>RPB_0270 primosomal protein N'
MDDSPTSPASPSAMRVVDVQVPVAIDQAYSYRVPRGLELKPGDVVAVPLG
SREVMGVVWAENENPDPRLHNRLKDVAEKLDVPPLREELRRLVDWVANYT
LSPRGQVLRMTLRMGELGPERVRTGVRLIGPPPQRMTPARRRLIEILSDG
LLHGKSDAAKEAGCSAGVIDGLVDEGTLSVEPMPREPAAPTPDPDFAPAD
FSPEQAAAAETMRELVKSGGGFQAALLDGVTGSGKTEVYFEAVAEIIRQG
RQTLILMPEIALTGQFLDRFALRFGVRPLEWHSELTPRTRARNWAAIAAG
EAQVVVGARSALFLPYADLGLIIVDEEHDQAYKQEDGAHYHARDMAVVRA
SIAKIPIVLASATPSVETEVNARKGRYRRIPLPSRFGGQHMPQIEAIDLR
RAPPMRGRFISPPLAEQIGHAIERGEQALLFLNRRGYAPLTLCRACGHRF
ACTICDAWLVDHRFRQRLVCHHCGFSMPRPHQCPHCGAEESLVAVGPGVE
RLQEEAASLFPQARTMVLSSDLITSIEAMRSELNDIAEGRVDIIIGTQLV
AKGHNFPRLNLVGVVDADLGLSNGDPRAAERTFQLLNQVIGRAGRDQGRG
VGFLQTHQPEHPVMKALVACDREAFYASEIDARERTLYPPFGRLASLIVS
AGDRPSAEGFARKLASCAPVDERVQVLGPAEAPLAVIKGRYRFRLLVKSV
RSFDLSNYLRSWLAQGPKTKGNLKLEVDVDPQSFL
>RPB_2421 DNA processing protein DprA, putative
MGERSSDQGTTVLTEAQRVDWLRLIRADNVGPRTFRSLINHFGSARAALE
RLPELARRGGAARAGRIPSEDEARREIEGGRRLGVELVAPGEPGYPPRLA
TIDDAPPLLGVHALPDALALMQRPMIAIVGSRNASGAGLKFAGLLAGDLG
ASGFVVISGLARGIDQAAHRASLGSGTVAVLAGGHDKIYPAEHEDLLLDI
IEARGAAISEMPLGHVPRGKDFPRRNRLISGAAVGVVVIEAAYRSGSLIT
ARRAADQGREVFAVPGSPLDPRAAGTNDLIKQGATLITCAADIIQAVAPI
LDRPIELPGREPDHPPPASDPDPSDRSRIVNLLGPSPVGIDDLIRLSGIA
PAVVRTVLLELELAGRLERHGGGLVSLL
>RPB_1080 Radical SAM
MSRASNALKRPPVTAPSEPVGAISPFPEIEIAIDKQRRRGRGAQSNESGR
YEAEARVAFDDGWQSLDELPPFKTTVALDTARKVITRNESPDIGFDRSIN
PYRGCEHGCVYCFARPTHAYLGLSPGLDFESRLFAKPDAPALLEKELAAA
DYQPRMIAIGTNTDPYQPIEREHKIMRGVLEVLEKTGHPVGIVTKSALVT
RDIDILARMAKRQLAKVALSVTSLDPKLARTMEPRASAPEKRLEALKRLS
EAGIPTTVMVAPVIPALNDVEIERILDAAAHAGVKEASYVMLRLPLEVRD
LFREWLMANYPDRYRHVFTLIRDMRGGRDYDSQWGTRMKGTGPIAWMIGR
RFETACARLGLNKRRSKLTTDHFEKPERAGQQLSLF
>RPB_0926 Phage integrase
MADTKYLQKKGNTWRVVVEIPKPLREALQGKPRFIKSLGTESLSEANRIK
HQHVAEFKRRIKLAEQGKADPLAAAIEAAIAFREAFASHDNEYLVHGDQE
STGAEELLEVVNQEAQALLKTRGPEASRLFHSLATGKATLIRDQYPTWLA
ICNGTEQTKAQHEATIKRFLAWAGEFMSIEGTDRKKAGEYVQVLRDAKLA
AKTIQRHLSSLATLWSWLTSRGLTSTSERDNPWRGHGVGKTPRGTKKKST
RTGLSNEKLLKLLRGRYSTPRYATILADLTRLALLHGSRLDELCALKKAD
IQKIDGDYWFQITEGKTEAAVRRVPLHPLAVPIIERRLKGPGKEYLFDGL
VPGGPDRKRSWNASKAYGRFRKDVGVAARYEDFHALRKTFADLMEGLEVP
ERTVQLIIGHERGFTYGDYSSGQRVNLRKIINQVDYGSEVMAAIALPAPE
>RPB_0472 DNA-cytosine methyltransferase
MKIAGLFAGIGGLELGLHRAGHETVILSEIWQPAGAVLEHRFKGAPNVGD
VATLTSLPSEVELMTAGFPCQDLSQAGKTAGIKGGKSGLVTHVFRLIDRS
RPKWVLLENVSFMLRLDGGSAMTRLVSEFERRGYRWAYRVVNSLSFLPHR
RARVFFLASIEGDPADVLLVDDAEPAGLQTSLQSHAHGFYWTEGTRGLGW
GPDCVPTLKNGSTVGIPSPPAILMPNGEIVTPDIRDAERLQGLPADWTKP
AERVARASFRWSLVGNAVSKPVAAWIGQRLNAPGAYDRSRDGGSVVRGDW
PKAARSDGKACREVAISEFPKWAKRPSLQDFLRYEPRLLSARATAGFLSR
IEKSSLRFVPGFKDRVRSHLDHVRAIDAFVQEGRTLLAAE
>RPB_1775 Nucleoside diphosphate pyrophosphatase
MGLIDGTGLLADREADVTVSEAELIGRGFMSYERYEVSLRRDGEPPLLQR
RDVLRAARVAAVVPIDLARDALVLIRQFRLPAHFATGRGDMVEIVAGRVE
SGEAPAAAARRECIEEIGVAPERLVELYSVLATPGFTDEQIVYFAGFVDS
SAALQRGGLADEDEDTQPFVVSIDEALAALERGQVANALLVGALQWLALN
RSRLRELFDRAA
>RPB_0528 DNA mismatch repair protein MutS
MHRVMTIHPDIAPPPDLPAPAEPPAKVSPMMEQYHEIKAANPGLLLFYRM
GDFYELFFEDAEIASRALGITLTKRGKHQGMDIPMCGVPVERSDDYLHRL
IALGHRVAVCEQTEDPAAARARKSVVRRDVVRLITPGTLTEDTLLDARAN
NYLLAIARARGSSGTDRIGLAWIDISTGEFSVTECATGELSATLARINPN
EAIVSDALYSDAELGPSLRELAAVTPLTRDVFDSATAERRLCDYFAVATM
DGLAALSRLEAAAAAACVTYVDRTQLGKRPPLSPPSREATGATMAIDPAT
RANLELTRTLAGERRGSLLDAIDCTVTAAGSRLLAQRLAAPLTDAAAIAR
RLDAVEVFVVAPALREQIRSALRAAPDMARALARLSLGRGGPRDLASLRD
GIVAADQGLQQLSQLTAPPQEIAAAMAALRRPSRDLCDELGRALADDLPL
QKRDGGFVRDGYEAALDETRKLRDASRLVVAAMQARYADDTGVKGLKIRH
NNVLGYFVEVTAQHGDRLMAPPLNATFIHRQTLAGQVRFTTAELGEIEAK
IANAGDRALGLELEIFDRLAALIETAGEDLRAAAHAFALLDVATALAKLA
SDDNYVRPEVDQSLSFAIEGGRHPVVEQALKRAGEPFIANACDLSPGPAQ
ASGQIWLLTGPNMAGKSTFLRQNALIALLAQTGSYVPAARARIGIVDRLF
SRVGAADDLARGRSTFMVEMVETAAILNQATERALVILDEIGRGTATFDG
LSIAWAAIEHLHEQNRCRALFATHYHELTALSAKLPRLFNATVRVKEWRG
EVVFLHEVLPGSADRSYGIQVAKLAGLPASVVARAKSVLAKLEANDRGQP
KALIDDLPLFAITARAPAEPSPPSEAEQLIAAVQALHPDELSPREALDAL
YALKAKLPKTT
>RPB_2713 single-strand binding protein
MAGSVNKVILIGNLGADPEIKRTQDGRPIANLRIATSESWRDRATGERKE
KTEWHRVVIFSEGLCKIAEQYLKKGSKVYLEGQLQTRKWTDQSGAERYST
EVVLQNFNSVLTMLDGRPGSGGGGGYGGDDSSGGDFGSSGPSSSAPRRPV
AASGGGRGSDMDDDIPF
>RPB_2570 Histone-like DNA-binding protein
MAKKAVAKAATPTTVTLKHLAAALAEEHELSKKQTEAILGDLVGRITKHL
KKGERIRIVGLGILQVRKRAARTGRNPATGETIQIKASKKVAFRAAKELK
EAI
>RPB_2193 DNA-cytosine methyltransferase
MGNHAMQREVPSRIVAVDLFCGAAGLSLGLKISGIKVAAGIDLDPACRFP
FETNIGAMFVEADVSSLSGKAVDSLFGDASIRVLAGCAPCQPFSGYTTKR
RSIDRRWELLLEFLRIVRESDPDIVTLENVPRLANLPLWQDFVTDLKSQG
YFLNWDVLDVSKFGVPQNRRRLVLLASKFGDIRLPEPIGTPPTTVKKAIG
KLSPVKAGEANPVDPLHASRALTPRNLARIRQSRPAGTWREWPKRMRVAC
HKTGSGKTYPSVYGRMSWDKPSPTITTQFYGFGNGRFGHPEQDRAITLRE
GAILQSFPRDFQFAPTGSRVNFRGIGRLIGNAVPPALGLAIGNAILNHVT
ALKRTDRG
>RPB_0668 DNA polymerase III, subunits gamma and tau
MTDAGPPATPSDDSDRTGLAPTAGASGGAPAGAYRVLARKYRPNSFEDLI
GQEAVVRTVSNAFDTGRIPQAWILTGVRGVGKTTTARILARALNYELPDG
SVKGPTIHMPVHGVHCKAIMESRHMDVLEMDAASHTGVDDVRQINDSVRY
APASARYKVYIIDEVHMLSTAAFNAFLKTLEEPPEHAKFVFATTEIRKVP
VTVLSRCQRFDLRRVEADVLMKHLGGIAEKEGVEVEAEALGIIARAAEGS
VRDSLSLFDQAIAHAAGLVRADQVRQMLGLADRTRVIELFDALARGDIAA
AFAEFRDQYDTGADPVVVLSDLAEFVNFVTRVKIVPATADNVAFGETERL
RGREFATRLSMRVLSRMWQMLLKGIAEVQGATRPAAAAEMVLVRIAYAAD
LPTPDEAIRMIEQGGGGGGSLPSGGSAPRDAPSAPPSAPPSAMASAPPNY
ATPAAMAPRGGATMSQPSMARPQPAAAPQPTPAALTITSFPQLVALASEK
RDVMTRMALEADVRLVRIEDGRLELALERTASRSLIGELGRKLEQWTGRR
WTVIVSNEPGQPTLRSQNEAQKNERERAAESDPRVQEVLARFPGAKVIEV
RRLATEPAQTDAGIEGAVDPVDDDDDS
>RPB_1630 conserved hypothetical protein
MVPDLIRDHRGAHGVEPLPIAPSTYHAHVAKRRIPAKLSARTRQDAAPTS
EVRRMFEENFQVYGLRKV
>RPB_4269 Holliday junction DNA helicase RuvB
MTDPSRLVTPERRGDDLGDAALRPQNLSEFVGQEKARANLQVFIDAARKR
KEALDHVLFVGPPGLGKTTLAQIVARELGVGFRATSGPVIAKAGDLAALL
TNLEERDVLFIDEIHRLSPAVEEVLYPAMEDFQLDLIIGEGPAARSVKIE
LSKFTLVGATTRAGLLTNPLRDRFGIPVRLNFYTIEELESIVSRGARVLG
TGITADGANEIARRARGTPRIAGRLLRRVRDFASAADAEAIDRKIADHAL
GALEVDAAGLDAMDRRYLSTIALNYGGGPVGVETMAAALSEPRDAIEDII
EPYLIQCGYLQRTPRGRLLTPHAFKHLGLAEPSREPGQFGLFGGEEEA
>RPB_2482 DNA polymerase III chi subunit, HolC
MTEVLFYHLQGRTIEQVLPPLLEKSLARGWRVVVQAGSEERADTLDAHLW
TYRDDSFLPHATWRVADAMHQPIVLTAEESNPNAATVRFLLDNAALPADA
EGYERMVLLFDGDDEDAVGMARDMWKQSKSRGFEVTYWQADAAGRWQKRE
>RPB_2615 DNA repair protein RecO
MEWSDEGIILGVRRHGEAGAIVELLTRGHGRHLGLVRGGASSRLRPLLQP
GNSVLAVWRARLDEHLGYYQLEGTRMRAATMLASSHAVYGITHLASLARL
LPERDPHEDIYEMLERTLDDFDDVGDAATHLIRFELAMLAELGFGLDLSA
CAATGATTDLIYVSPKSGGAVSRTAGEPWREKLLRLPDFLREDNDGRNGW
SDQDLRDGFDLTGRFLLRNVLEPRGQGHSDARDGFINAVAKHLARAAIV
>RPB_2416 NUDIX hydrolase
MSETVTQAAHTVEQGEKEADHHPYFRPKDAATLILVDRSGSIPKVLVGRR
HDKVVFMPGKFVFPGGRVDKFDNRVPVAAQIPPELEANLLKGSPRITPAR
ARALAIAAIREACEETGLCLGCKADGAKTNLDGPWQPFAEAGLLPDPSGL
YLIARAITPPGRVRRFDTRFFTADASAIAHRVEGVVHADAELVELVWVEL
GSSPLADLHAMTKNVLGELHRRLATGPLRHDAPVPFFHFYGGKMQKDLLP
GA
>RPB_1194 NUDIX hydrolase
MMGIESAPGSISSADFFDRALRRLRFDVPPALTDASVIPESGDHGTDRML
RLIAQERPIRPAAVLIPVIEHAEPTVLLTMRAAHLNDHAGQIAFPGGKID
AADNSPLDAALREAEEEIGLDRSYVEPIGYLDVYGTGFGFRILPTVARVR
PGFELTINKSEVDDAFEVPLSFLMNPGNHQLHSKEFRGALRSYYAMPFAE
RYIWGATAGILRLMYERICLP
>RPB_2023 UvrD/REP helicase
MTEPNKRANPDLSGYQPAAGGIAARARASAAPAYLSGLNPEQREAVETLD
GPVLVLAGAGTGKTRVLTTRIAHILSTGRARPAEILSVTFTNKAAREMKL
RLGQMLGQAVEGMPWLGTFHSIGGRILRYHAELVQLTSNFTVLDTDDQIR
LLKQLLAADNIDDKRWPARMLAGLIDGWKNRGLTPSQVPAGEAASFGNGR
GGKLYAAYQERLKVLNAADFGDLLLENIRLFREHPDVLRQYQSRFKFILV
DEYQDTNVAQYLWLRLLSQAPSSSSSSLPGLTRQSIISQEDGSPGRDASR
RPGDDDRTSGDVAAPSSPPKNICCVGDDDQSIYGWRGAEVDNILRFDHDF
PGAKVIRLERNYRSTGHILAAASHLIAHNEGRLGKTLRTEDVDGEMVTVT
GAWDSEEEARGIGEEIEQLQRQGHKLNEIAILVRASFQMREFEDRFVTLG
LPYRVIGGPRFYERAEIRDALAYLRVINSPADDLAFERIVNVPKRGLGDA
TVQLLHDHARKRRIPLFEASRLVVETDELKPKARSSLRGLIENFERWQVQ
RNALSHTELAEIVLDESGYTEMWQKDRSADAAGRLENLKELVRSMEEFEN
LQGFLEHISLVMDRDGAADEDAVSVMTLHSAKGLEFETVFLPGWEEGLFP
HQRALDDQGRAGLEEERRLAHVGITRARRRAKLYFATNRRIHGTWNTTIP
SRFLDELPQANVEITESKGGSGWGGMSGYGPSRFDNVESFGSSYSTPGWQ
RAQAQRKNGGGRSGGGGFSESGASYSSSPRRAPFTIEGELVAKSTGTDSD
FTVSDRVFHQKFGYGQVTKIDGNKLTIAFDKAGEKKVVDSFVQRV
>RPB_0263 NUDIX hydrolase
MPYRRNVGIALFNAEGRVLIGRRFRDDGPEIILPGLEWQMPQGGIDEGEE
PHTAVMRELWEETGVQHAELLGEADWIAYDFPPYDGPPHRLEHFRGQRQK
WFALRFTGNDSEIDPLAVRNDMPPEFDAWRWERLDRVADLVVPFRREVYR
EVARSFARFVLPAT
>RPB_0437 transcriptional regulator, AraC family
MMNLALADHRLTKPGPRDTALADYDAVRRAIAFISQKWKTQPTVEAIADA
AGLTPDELHHLFRRWAGLTPKAFMQALTLDHAKSLLRGSASVLDAALDSG
LSGPGRLHDLFVTHEAMSPGEWKSGGAGLTLRYGYHPSPFGTAVVIASER
GLAGLAFADPGGEEAAFMDLQQRWPRATCIADQAFTAPFAQRVFDPVQWR
PEQPLRVVLIGTDFEVRVWETLLKIPMGRALCYSDIAHRIASPKASRAVG
AAIGKNPISFVVPCHRALGKTGALTGYHWGLTRKQAMIGWEAGRLGAG
>RPB_0004 DNA replication and repair protein RecF
MTASRITRLTLTHFRNYRAAVLTTSAERVVLVGANGAGKTNCLEAISFLS
PGRGLRRATLDDVADNEGDGSWAVAAEVEGALGLATLGTGIDPPRADAAT
SRRCRIDREPVGSATAFGDHLRMVWLTPAMDGLFMGAASERRRFFDRLVL
AIDSQHSGRVSALDRSLRSRNRLLEVRYPDAHWLDAIERETAELAVAVAA
MRGQTAMRLAAMLDARGAASAFPSAKIMLDGWMESALLTEPATAVEDRYR
TILREGRPRDAAAGRTLDGPHLTDLEVVYAPKAMPARDASTGEQKALLIG
LVLAHAQLVSEMTGITPLLLLDEVVAHLDPSRRAALFEELAKLGAQVWMT
GADPAAFAEIGSGAEIFTVESGRIRPQQ
>RPB_2419 DNA topoisomerase
MNLVIVESPAKAKTINKYLGSSYEVLASFGHVRDLPAKNGSVDPDANFQM
IWEIDPKAAGRLNDIAKALKGADKLILATDPDREGEAISWHVLEVLKQKR
ALKDQKVERVVFNAITKQSVTEAMQHPREIDGALVDAYMARRALDYLVGF
TLSPVLWRKLPGARSAGRVQSVALRLVCDREMEIEKFVAREYWSLIATLT
TPRGDAFEARLVGADGKKIQRLDIGTGAEAEDFKQAIETANFNVSSVEAK
PARRNPYAPFTTSTLQQEASRKLGFAPAHTMRIAQRLYEGIDIGGETTGL
ITYMRTDGVQIDPSAITQARKVIAEDYGSAYVPDSPRQYQAKAKNAQEAH
EAIRPTDLSRRPSEVNKRLDSDQARLYELIWVRTVASQMESAEMERTTVD
IEAKAGSRVLELRATGQVVKFDGFLAAYQEGRDDDSEDEDSRRLPAMSEN
EALKREALAVTQHFTEPPPRFSEASLVKRMEELGIGRPSTYASILQVLKD
RGYVKLEKKRLHGEDKGRVVIAFLESFFARYVEYDFTAALEEKLDRISNN
EISWQQVLRDFWTDFIGAVNDIKELRVAQVLDVLDEMLGPHIYAPREDGG
DPRQCPSCGTGRLNLKAGKFGAFVGCSNYPECRHTRPLAADGGGADADRV
LGLDPDTGFEVAVKSGRFGPYIQLGDAKDYAEGEKPKRAGIPKGTSPSDV
ELDVALRLLALPREVGKHPETGEPIKAGIGRFGPYVQHEKTYASLEAGDD
VHNIGLNRAVTLIAEKIAKGPSKRRFGADPGKPLGDHPSLGPVAVKAGRY
GAYVTAGGVNATIPNDKTQDTITLPEAIALIDERAAKGGGAKAKKKAPAK
KAAAKSDAKPAKKAAAKKPKAEGAAASPARAPVKAKTSTTKPKAAAAKPK
SPAKKSAAKNG
>RPB_4339 NUDIX hydrolase
MSHPHNDTLRADIAARCRVFPRHDDGLTPHGLKRAAVAITVVAGDDGAAA
FLLTFRAARLRAHSNQWALPGGRCDPGETAPETALRELHEELGLELRAGD
VLGMLDDYPTRSGYLITPVIAWAATAAVLAPNPDEVASVHHIALAGIARE
DAFDFTRIPESERRVVRFRHDGDYIHAPTAALIYQFREVLAGRVTRVADL
EQPVFAWK
>RPB_3717 conserved hypothetical protein
MAEISADLVYEVLKAVQRDISQIKGEISEMKLDIQGLRLSQNGIRQEIIG
VHNELAGIHATLMRHDQQLDRIERRLEINDIPALT
>RPB_4524 Phage integrase
MTLSKPIVSFLDHCSVERQLSDHTLQAYGYDLADFAAWVGTRRRKDKAFS
AGAPIETDHLRAYLEHMTERKLSAATVRRRLACLRSFFRYLEDRGTMPNP
FDGWRLKLPKRKRLPRTLSRDETTQLLKSARAPGAARHAAPESPSLCTEI
RLMIATGIRIGELCKIASTDVSSDGAAIRIHGKGSRDRMVYVTDNGLRAE
LRKLAVLRQRTLGGDGPLFLNRNGDKLRPHSFRAKLRNFAGQAGVRRRVT
PHMLRHTAATLLIESGVDIRIVQRLLGHSSIATTEIYTHVSDEALRSTLA
RANILAGLAR
>RPB_1636 conserved hypothetical protein
MKRHGTIQIASKLRLARELAARGKTQAEICKELGISVMTFHRWRKMVPEP
SAATPETPTAPVLDASERSSTKTEDELLDENRRLKRIITDLLLDKMKLEE
LIEAQSLGRKRN
>RPB_2716 conserved hypothetical protein
MVAKPYTWKDGATLEEHSRRKHQIIRQYFARYIRVRCQLPQQSKFRFAIV
DGFAGGGVYNCGASGSPLIFIEELRATSIELNLRRANEGMSPLDIECVLI
FNDFDPGAIEILKQHVAPLLAGIKESEPRLHLEVHYRQQEFENVYAEIRE
FLQYNRVQSVLFNLDQCGNSRVAHETLTDIIASFSSPEIFYTFAIEALIS
FLKKTDPNALNARLNPIGVDADSVSNLGLMMNNQAWLGATERLVFEAFER
CASYVSPFSIHNPNGWNYWMLHFAKSHRARQEYNDVLHDNASTLAHYGRS
GLHMLAYDPQHEGGLYLFDMKGRDSAKSQLHGDIPRLVSEFGDAVSVADF
YASIYTATPAHTQDIHGVMIENPDLQVVTARGGDRGAPHTIRPTDTLRLR
QQRSFSFSTPPSKRR
>RPB_0387 DNA polymerase III, delta subunit
MVALRGRDATSFLARPDPGRPIILLFGPDAGLVRERADALIASALDDPND
PFALVRLDGDELAAEPSRLVDEANSIPMFGGRRAIRIRAGSRSFVAGVET
LVASPPKECRIVIEAGDIKPDNALRKACEKAASAVAIGCYPDAEADLAKL
IDDELRAAQLQIGRDARGVLMTLLGGDRQASRNEVRKLALYAHGQGEITL
DDVIACVSDASDLKLDVIVDAAFSGKPQVVESEFAKAMVAGTYPGQIILA
AQRHAAFLHKTSLAVDAGTPAATALDSGFPRLHFSRKAASETALRNLGPS
RLAQIIDQLATAALDTRRQATLGAAIAQRTLLSIAVSARRRS
>RPB_3531 conserved hypothetical protein
MTYPITQIDGITVAAAGKLKSAGIRTTEALLEAARTMRGRKALAAKTGLS
EQQLLEWANIADCMRIPGMGKAKAELLRAAGVNTLREFTHRNPARLAQNM
KEANLKRKLVRALPSEKEVGQLIEEARKLPLKISY
>RPB_4701 ATP-dependent DNA helicase, RecQ
MTLSASRHASDDLDARALSTLNHVFGLPGFRGHQEAIIRHVAHGGDCLVL
MPTGGGKSLCYQLPALLRDGCGIVVSPLIALMRDQVAGLLEAGVRAAALN
SSLSYAEADAIERQLLAGELDLLYVAPERLLTPRCLAMLARAKIALFAID
EAHCVSQWGHDFRPEYVGLSAIAEKFPNVPRIALTATADALTRREISERL
GLTDAPCFVSSFDRPNIRYAIVDKQNAPAQLKAFIADKHMGHSGVVYCLS
RAKVEDIADTLCKAGIDALPYHAGLPAEIRARNQDRFINEDGVVIVATIA
FGMGIDKPDVRFVAHLDLPKSIEAYYQETGRAGRDGKPSDAWMAYGLSDI
VQQRRMIDESSGSDAFKRVSMGKLDALVGLCESTACRRTRLLGYFGETAL
EPQCGNCDNCLSPPKVIDGTVAAQKLLSCAYRTGQRFGAQHLIDVLLGRL
TERVGQFGHDKLSVFGIGGEFNEKQWRAVIRQLVSLGHLAPDSEAFGALK
LTESSRAVLKGDAQVMLREQTGGRPPRAKSRRGDLVGGAPRESTGDPDLF
AALKAWRSEVAKSRGVPAYVVLHDATMDGIAAVRPRSLDELRGIPGIGDK
KLEHYGQELLALVNASGS
>RPB_0533 Tyrosine recombinase XerD
MRKPRARFSPSASVPATAAGEREAAPLRPTSYSDAGLSELFLDMIAAEQG
ASANTLDAYRRDLADLSHYLGRRRKSIASADTEALRGYLADLDTRGFAST
SVARRLSALRHLFRFLLSERIRVDDPAAILSGPKRGRGLPKVLSIADVDR
LLGCARQEADAAEGAAGLRAARLYCLLEVLYATGLRVSELVALPRTAARG
DARMIVVRGKGDKERLVPLNGSSKAAMTRYLATAAAAEKAAAGGKKTAAP
ASKWLFPSFGESGHLTRQHFARDLKELAARAGLPPRLVSPHVLRHAFASH
LLHNGADLRIVQTLLGHSDISTTQIYTHVVEDRLKSLVRDLHPLAEG
>RPB_3319 SNase-like nuclease
MTLRAMTLILTCLIPLAATHAEPIDGARIRVIDGDTIRIDRQKPDHRLVG
FNAPETRRAKNEAERELGGRATARLREILRGGKLDYTVVPCACRPGTEGT
MACNFGRRCGMLKADGVEVGTVLIREGLAVPFMCGPTSCPRTPNQWRQPQ
RAPQAEKP
>RPB_1081 Ribonuclease H
MIRNSTKPAKAAPGKAKTTPKAAKSAATSSKATGTAQAVKASPAKGLGKG
VIAVAPPSFRRERALIKRGIWPVAGCDEAGRGPLAGPVVAAAVVLDPKRV
PKGLDDSKRLSAEKREELFEEICASAQVSVACASPERINRDNILRASLWA
LTRAVHALPDLPQHVFVDGRDRLATRCESEAVIGGDGLIASIAAASIIAK
VTRDRLMCRLAQDCPGYGFEQHKGYGVPEHLAALARLGPSVHHRRFFAPV
AAAWQKIEGAPAEPTGLTGDLFGTPADSGHAATL
>RPB_0379 exodeoxyribonuclease III
MSFTLTTWNINSVRLRIELVAKFLKAQRPDVLCLQETKCPDDAFPAKRFK
RLGYEHIALNGQKGYHGVAVISKIPFLATDIRTFCDNIDSRHISVSLQTG
AADPPLLLHNFYVPAGGDIPDPEANPKFKHKLSFLDEMRACAPLHPSGDA
RHILVGDLNVAPHEHDVWSHKQLLKVVSHTPVECDKLLAVQAAGNWVDVA
RERIPLSEKIYTWWSYRAADWTIGDRGRRLDHIWVSEALRARVTDFKILR
DARSWERPSDHVPVTVTMEL
>RPB_2364 Deoxyribodipyrimidine photolyase
MSNDIPRPVIVWFRDDLRLSDHPALHAAAASGSPLICIYVHDEQSPQLRP
PQARPIGGAARWWLAQSLRALAAELEQRGARLILRRGPAAAIVGELARQV
DAAAVHWNEIEIAPHRAIADDLAETLSMSGIDHHRHPGDLLVAPSEIRTK
DGRGLRVFTPFWRRVLGLGDPPKPLPAPAMLRAGPDIASDDPATWQLEPT
APDWAGGLRASWTPGERAAHDLLTAFLDRLPGYAADRDRPDRDATSLLSP
HLRFGEISPRQLWYAARFAAAKRPAIAADIDKFLSELGWREFCRHLLHDH
PDLAERNLQSAFDAFPWTRDDAALAAWQRGRTGYPIVDAGMRQLWHTGVM
HNRIRMVVASFLVKHLLIDWRLGEEWFWDTLVDADPGSNPGNWQWVAGSG
ADAAPYFRVFNPILQGEKFDPAGDYVRRWVPEIAALPNKFIHQPWTATLL
ERAAAGVALGGNYPAPIVDHKVGRARALAAYAELRQS
>RPB_0190 hypothetical protein
MPSPVRKRSADGSDKSDVWWLRKKVPARYRAIVGRGEVWRSLGTTDLKAA
NVACVKLSAELERDWAARLHAAQDAGRVSSPRALTSRELSGLQRLVHEQT
RDAQLANPPPRHAWGLDTGDRTDDEHLEELEYDEAKMASFLARNGFEVSE
ADQRRFLPLFLQARREAYRDLHRATRLDYSDSPLLAKYAPTPLPSVDFLE
AFEFYCTSAGIKGGATGPTARRWRSKIIEFCEFVNHADLARMTADDGYRW
VDHLVDAKGIARKSVRDVWLASLKAVASFIVERRKLASNPFLGIRVRRAD
TGTKESNQKGFTDSQAVLILTATLANPSHLTIAETRAARRWVPWICAYTS
ARVNEITSLLPSDVRQDPETAIWCFYLRPEMTKGDYMRVIPVHSHLIEQG
LLNYVGEREGLSLPLFYDPRRAEGDTVAHPQWQKIAQRLAEWVVNSLGVT
GVKPNHGWRHRFKSVARHANMHPEVENFITGHGGSDDPGVIQRVSMRYGD
AWVKTLKKTIELYPRYEIEGLKRRPEPHRRPRRTRQIGAPGTRQASTATG
HASHRDPE
>RPB_4176 DNA mismatch repair protein MutL
MPVRQLPETIVNRIAAGEVVERPASVVKELVENAIDAGASRIDIFSDGGG
RRKIVIADDGSGMTRADLALAVDRHATSKLDDEDLLQIRTLGFRGEALPS
IGAVARLTITTRHAGEPHAWTLGVEGGDKSPIAPAALSQGTRVEVADLFF
ATPARLKFLKTDRTEAEAIRDVVRRLAMARPDIAFTLAGEERAPVTWAAA
LPGAPGQLIRLGDILGADFRANAIEVRSEREGVAVEGFAASPALTRANAL
GQYLFVNGRPVRDKLILGAVRAAYSDYLPRDRHPVVALFVTLESREVDAN
VHPAKTEVRFRNAGLVRALIVHALKEGLAREGRRTAANSAGSVISTFRPA
SMPAANWDWRASPSYPVGGSAIDAPSFAERPQAAFDVGGPSADIRTHEVA
PDLLDRPLGAARTQIHETYIVSQTRDGLIVVDQHAAHERIVYERLKASLA
ANGVQRQILLIPDIVEMDEATVERLVARADELAQFGLVVESFGPGAVAVR
ETPSLLGKTDAASLLRDLAEHMAEWDEALPLERRLMHVAATMACHGSVRA
GRVLKPEEMNALLREMEATPNSGQCNHGRPTYVELTLTDIEKLFGRR
>RPB_3860 serine/threonine protein kinase
MTGMDQPSFEPGSTVDGYLIEGPLHRGGMAELFAVRRADNPMPMVMKIPR
TGEGEDPAAIVSFEMEQMLMPRLNGPHVPQFVALADFSTQPYIVMERIAG
EPLLSRLPDLPLPYDEAAGIAAKIAAAVADLHRQHVIHHDIKPSNIMFRP
SGEAVLLDMGLACSDQLPDLMQEEFRLPFGTAPYMAPERLLGVRNDPRSD
LFGLGVLLYFFTTGIRPFGETETMYGMRRRLWRDPVPPRKLRPDYPPWLQ
EIVLRCLEIQPQWRYPTAAQLVFDLTHPTEVKLTTRSEKLRRDPWKTVLR
RRFNKELTRPRQETLAAHLASAPIIAVAIDIAEGSAALNDELRVTAGRIL
ATLPSARLACLNVLKLGRMTIDRTLDEHGHNKHVDRLVALRHWAEPLKLD
DDRLTAHVLEAVDPASAILEFAQASRVDHILIGARRNSVLRTLAGSVSAK
VAGEANCTVTIVRAAAAPARPSRRPSVSQDNRDDQA
>RPB_3563 DNA polymerase III, alpha subunit
MNAPRYAEIGVTTNFSFLEGGSHPQDYVHQASRLGLDAIGIADRNTLAGV
VRAYSELDNEELAYKPKLLIGARLCFVDGTPDVLAYPTDRAAYGRLCRLL
SAGKLRAGKGECHLTFADLEAFVSSNAARPFPSSWPGLTRPSTSLQPRVL
QDVDARDKPGHDGGKREIGRSQILFVLMPPYRFQAKAITAALERLTALNS
GNVWLALAPYYRGDDKRRLARLRRIAAAADVPGIATNDVLYHHPSRRALQ
DVLTCVRDKTTIDKAGRRLEGNAERHLKPAAEMARLFRADLDAVAETLRF
ADRISFTLDELKYHYPDEPVPPGKTAQQHLEDLTREGIATYFPNGISDRL
RATIAKELTLIAKRDYAHYFLTVHDIVRYARSQNILCQGRGSAANSAVCY
VLGITCVDPTEIDLLFERFVSEERDEPPDIDVDFEHSRREEVMQYIYRRY
GRHRAAIVSTVIHYRPRSAIRDVGKALGLSEDVTAALADTVWGSWGKGLS
EMQVRQAGLDPTNPMIGRAVELATELIGFPRHLSQHVGGYVLTQDRLDSY
VPIGNAAMADRTFIEWDKDDIDAVKMMKVDVLALGMLTCIRKGFDLIAQH
KGVRFQLSDIKSEDDNNVYQMLQRGESIGVFQVESRAQMNMLPRLKPRCF
YDLVIEVAIVRPGPIQGDMVHPYLRRRNGQEPVVYPSPSGEAGDKNELQQ
ILGKTLGVPLFQEQAMRIAIEAAHFTPDEANQLRRAMATFRNVGTIGKFE
SKMIGNLMARGYDATFAKNCFEQIKGFGSYGFPESHAASFAKLVYVSAWM
KCEHPDAFCCALLNSQPMGFYAPAQIVGDARANKVEVRPVDVSFSDGQCT
LEERCGAYHAVRLGFRQIDGFRWADPDEERVRLEAGLPPSDDWAARIVAA
RARGPFGSLEQFARITALPKRALILLADADAFRSLGLDRRAALWAVRRLP
DDVPLPLFEAASAREQQDEQAAPLPQMPMAEHVVADYQTVRLSLKGHPLE
FLRAVFATERVVTCREVSETRRNGRRVRCAGVVLVRQRPGSASGVIFMTI
EDETGIANIVVWPSVMEKFRKEVMGARLILVEGKIQASPEGVVHLVAERL
VDRSSEMGRLSEGLARPPLPTGADLYEPLTYEPLNGDRRDNPDAPAQRLR
HPRDVRILPPSRDFH
>RPB_0666 recombination protein RecR
MAIAVAGPEIERLIQLLARLPGLGPRSARRAALHLIKKRDALMTPLASAL
QVAIDKIEVCKTCGNIDTQNPCTVCTDPRRDPSIIVVVADVADLWALERA
SATNGRYHVLGATLSPLDGVGPDDLTIDALVARAHDPAVGEIILALNATV
DGQTTAHYVTDLLQDANVKVTRLAHGVPVGGELDYLDEGTLSAAMRQRTL
F
>RPB_1793 DEAD/DEAH box helicase
MERTNLLTSFQDFGLADPISRALQEENYTVPTPIQAQTIPLALAGRDVVG
IAQTGTGKTASFALPILHRILENRIKPQPKTCRVLVLSPTRELSGQILDS
FNAYGRHIRLSATLAIGGVPMGRQVRSLMQGVEVLVATPGRLLDLVQSNA
LRLGQVEFLVLDEADRMLDMGFINDIRKIVAKLPIKRQTLFFSATMPKDI
ADLAEQMLRDPARVAVTPVASTVERINQRVIHLDHSAKPAMLATILQQDG
VNQALVFTRTKHGADKVVKGLQRAGITADAIHGNKSQNYRERVLAAFRTG
ELRTLVATDIAARGIDVDGVSHVVNFDLPNIPETYVHRIGRTARAGAEGT
AISLCAGGEETGYLRDIEKLIRIALPKEDHRTPGAKPAPSTAPQRGGQRN
GQQRNGQQRSGGQRNGAAPHAARGDAAPGSNDPRRPRRAGGPNAGRNPDA
ARHEPAVRPQHGGQAEGLQGVAFLQRKNDRPAKTTNQRPQR
>RPB_0471 putative patch repair protein
MSSTACETPVDPARSALMRRVRQKRTRAEDDVADVLRELGLRFRRNVRTL
PGSPDFANKTHHWAIFVNGCFWHRHQGCHRTTTPTRNREFWLAKFAANVK
RDKIKTRLLRAMGFRVVTIWECETRTPTKVRRRLKGLMR
>RPB_4201 RelB antitoxin
MPTKPRAKSPSRATTGQPARLTAKTAARKAVKSSYINARVEPKLKKSAEA
VLDKLGLSTTYAVTIFLKQVVAHKGMPFPVKVPNKETIRAMRELDRGGGT
RHDGDAASLFADILGPKPRKS
>RPB_3741 recA protein
MAAAPTALRIVEGSSMDKTKALAAALSQIERQFGKGSVMKLGKNDRSMDI
ETISSGSLGLDIALGVGGLPKGRVVEIYGPESSGKTTLALHCAAEAQKKG
GICAFIDAEHALDPVYARKLGVNVDELLISQPDHGEQALEIADTLVRSGA
IDVLIVDSVAALVPRAELEGDMGDALPGLQARLMSQALRKLTASINKSHT
MVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRRIGQIKERDEV
VGNQTRVKVVKNKLAPPFKQVEFDIMYGEGVSKMGEILDLGVKAGIVEKS
GAWFSYDSQRLGQGRENSKAFLRANPDMTAKIEASIRQNSGLIAEQILAG
SPESDADGEEPGDE
>RPB_4628 SNase-like nuclease
MLKTFLLPLCLVLLLPVTAQAADVTGVPKIRDGDHVTIGGARIRLAGIDA
PSLDQLCLNPKGERWTCGVAARDALAAHVGGKSWTCRVTRTEKNGLSIAK
CEVDGEDIQQWMVKNGWALSYVRVARTYDADEKLARAARAGLWQGAFIAP
WDWRVRNSKTAVLGATRPPKNARRILLASASGPVAPSPDCTIKGNVNTAG
ECIYHKPTSRWYAKIKMTISKGTRWFCSVEEAEAAGCRETRR
>RPB_1859 exodeoxyribonuclease VII, large subunit
MARLLAPETLANVGEFTVSELSQALKRTVEDSYGHVRVRGEISGFRGAHS
SGHCYFALKDESAKIEAVIWKGVAGRMRFKPQEGLEVIATGKLTTYPGSS
KYQIVIEALEPAGVGALMALMEERKRKLGAEGLFDEARKQLLPYLPEVIG
VVTSPTGAVIRDILHRLEDRFPRRVLVWPVKVQGEGSAEQVAAAIHGFNA
LPEGGPIPRPDLLIVARGGGSLEDLWSFNEEIVVRAAAESMIPLISAVGH
ETDVTLIDFAADKRAPTPTAAAEMAVPVRAELFVEVQSYARRMMLCWSRG
QDSRRNELRAAARALPAAGELLAIPRQRLDGAASSLPRALRANTHAHHRR
YAKAASGITLNVLRAQVSHSAQRLGSTGERLKHCTRATLRHRRDRFESLA
IRLQASKLANEQAQRMRIARERERMLRLAERARRAWATLRDRQQARLVQS
GKLLTALSYRGVLARGFALVRDADGHALHAAAAVSAGARLSVEFADGRVG
VTADGGGATRPDIAKPATPAAKPAPKRVSKPIDQGSLF
>RPB_0700 DNA repair protein RadC
MVDPISNAAPPMPADSSERLDPPGFAEAPHYHGHRERLRERFREAGAAAL
SDYELLELVLFRALPRRDVKPLAKALIARFGSFAETMQAPEPRLREVSGL
GEAAITEIKLVAAAAARVTKGQVKSRTVLSSWSAVIDYCRTTMAFADREQ
FRILFLDKRNQLIADELQQVGTVDHTPVYPREIVKRALELSATAVIMVHN
HPSGDPTPSQADIQMTKTIVAIAEPLGVAVHDHIIVGKNGHASLKGLKLF
>RPB_3046 Phage integrase
MYLWKRGTVYWFRRSIPQDLKAHVGSNDAAASLRTGDRRKARRRAMRLAV
TMDEWSEAVRQAQLNDLEQPDRALLLKMFDDAMGLVESQQATDSTRQQAD
AIQAAITEYKATAGTRERLSGINQRIRVIGDRVAALTAAPAKAPSSEIAD
LRADLMNEMAKVRNDVQNAHKNQWSADLLSTKIDDYVQAKAKELGGTKHV
STIGPRIRNFLETIGDKPLRDYTRQDFERYRDILDRTPKRAFDRFKTNNL
ADAAERNEKRARPFEVIDDKTVDDDYLTPVKTFFMHLVRNLWIPATPAIG
IVSSRTRESRRTDRPDEGRRAFKPDPINAYFRYIVQKRSRATEDFWLPIL
ALYTGARLNELCQIEPRRIILHNGRWHIDLLTIYDRDEIERAVKGMKKEE
KSAARLKLKTASARRQIPIHDDLIKIGFIDFVDQRRNHPKYTRLFPNLRP
DQYGYFSSAVGKRLNRDIKSAGAKTDDTSFYSLRHNFAAALERALVPHRT
KDRIMGHLVVGAQGHYTDPELEDVETAVIERVSFPGVDIAPYLSQKRL
>RPB_0629 UvrD/REP helicase
MSGPRSIPDQARERQILASDPSASVFVSANAGSGKTHVLVQRVIRLLLDG
VPPERILCITFTKAAAANMAERVFTTLGRWVTLDDAALTAAIKATGIKSV
GPSLLAQARKLFACALETPGGLKVQTIHALCTRLLQQFPFEANVPARFSV
LDDRDQAELMQRASLAVLLQAAAAPDSAAGRALALAMTSAADITFREVVQ
EACMSRDRFLGWIAQAGGVDGAMAQLSVTLGVAAEDDCDAVERDIVDGPH
LPRARWTDGATIFDGGSKTDHDQAQRLRDALAASDTAQLEKYLELFFTKE
AKLRKSFATKKIADPMPGFAEDLKREGARLEGLLERRRALLMRERTRALL
VIAFDVAERIRREKQERGLLDYDDLIDRTLQMLDSGASSWVHFKLDRGVD
HVLIDEAQDTSPKQWDIVAHLIAEFTAGEGAREGIKRTVFAVGDEKQSIF
SFQGAVPKEFAERRDLLQRRFHGAGLAFEKVSFNYSFRSGATILQSVDHV
FRDPDIYRSIHADTSYPLHEALTDAGPSLIDLWPLEVPDDKQEIEGWRAP
FDAVSETSPEVRLADKVRAEIASLIASGTMTGPRDDRRRLRYGDVLVLVR
RRGSAFDAVIQALKRGGIPVAGADRLKLTEHIAIIDLMNLADALLLPQDD
LALAVALKSPLFGFDDDDLFRLAWRRKGSLRAALRDKAAGDAKLTAVLHR
LDTCAEQSQAETPFGFYAWLLGGDGGRARILRRLGPEANDALDEFLELAL
SFERKQPPSLQGFVAWLRAADTEIKRDMEISRDEVRVMTVHGAKGLEALV
VFLVDTTSSPADSQRLNLIRLPGGNAQPGAPSAMVWAGRKADDPRAVEQA
RAAMISDTEDEYRRLLYVAMTRAADRLIVGGCMPGNRNDVRALSWYDLIS
KGLENSGLAMRAVPPPDGAVKRYCRPEDEVVETAAPDETPAAAPLILPNW
LHRSAPALRAPDNLLRPSDAHDADHRRLRRGESEAQRQRALQRGTLVHRL
LQSLPDLPADARASAAARYLARNAKDWNDEDRDALAARVLQVITATRFAV
VFAPGSRAEVPIAGRLQRHGEPVLVSGQIDRLVVTDAEVLIVDYKTNQVP
PRSLAETPPAYLRQLALYRAVLARLYPQRPVRAALLWTEAPEIMEISASA
LDAEQAALTVA
>RPB_2985 DEAD/DEAH box helicase
MSFNNLGLSDKVLAAVAASGYTTPTPIQEQAIPHVLARRDVLGIAQTGTG
KTAAFVLPMLTMLEKGRARARMPRTLILEPTRELAAQVKEQFDKYGAGQK
LNVALLIGGVSFGDQDLKLTRGVDVLIATPGRLLDHTERGGLLLTGVEML
IIDEADRMLDMGFIPDIERVCKLVPFTRQTLFFTATMPPEIRRVTETFLH
NPEKIEVSKPASTAVTVAQSQVACGREPHEKRETLRSLIRAATDLQNAII
FCNRKREVALLAKSLQKHGFSVGALHGDMDQSARTAALDQFRKGELPILV
ASDVAARGLDIPEVSHVFNFDVPHHPDDYVHRVGRTGRAGRLGTAISIVA
PSDQKSIAAIEKLIGKEIPRVDAGPVGEADREQAEDTDRPARSSRRSSES
RSREVRGEDRPARESRGPRREPRGEGRGEARPAREPREARAPVEAREAPR
EVREPREPREARKPRREPRNAPAAPAAAPAAHASFGSAPPARDLSSEPGD
HSHLPAFLLRPVRARG
>RPB_3325 DNA-cytosine methyltransferase
MPQVPFSVVDLFCGAGGLSQGFRDAGFRVVAGSDNDPDAMATYRANFPEA
AGITGDIRSAPIKEQLLEAARRATVLIGGPPCQAFSQVRNHTRMIDDPRN
SLYREFVDVLKQSLPPAFLIENVTGMDQMGVRDQIASDLSLDGEYTVLPQ
VVDAADFGVPQTRKRLLFVGVRSRSRMSPPILMGAGATDAFALERVSAGG
RARYRVVFKESAWGERASAILADPDNLSVVSAADAIGDLACLPLGNRQDI
IPYSDLPDAQSAYQRLMRKGGKATLSNVQVPRINEDTKLRLGGIPPGGNY
RDLRAGLQERYITGQRWGQDNGSGMLSRKHFYAYRRLHPDLWAWTLNTKG
DAVYHYNKLRALSVREFARLQSFPDRFVFTTDQRRGKIEGRHDGGPAHSR
YRQVGNAVPPLLARAVAESLIAQLKLLDFTDRSLVAAE
>RPB_0670 NUDIX hydrolase
MSSAFPLGQPAFVSNILDRAAHLRRDDSKLMAMEDKSDTRAYVVHRDSLV
VKHEDGGPRALLSIKEALSLGANPGTIFLGLRDGAAVFGMGIGATAVETL
MTRSDAGIAELRGMAMQGILPPEQLSAIAMAKSMVSWHQRHGYCANCGTR
TAMTQGGWKRDCPNCKAEHFPRTDPVVIMLVTSGDKCLLGRQKPFPAGMY
SCLAGFVEAAETIEDAVRREIFEESGIRCSEVRYYMTQPWPYPSSLMIGC
TAIATTEDITIDFTELEDARWFSRDEAAAMLNRQHPDGLVGPHPFAIAHH
LVGRWLEQTS
>RPB_1281 deoxyribonuclease
MTTFTPIQDDALKAVAAWLKAKPGRGGTPLVFRLFGYAGTGKTTLAREIA
EGVSGEVKFAAFTGKAALVMRNKGCDDASTIHSLIYRTKESGVEQPSFEL
WDDAPASKAKLIVIDECSMVDEELGRDLMSFDCPLLVLGDPAQLPPIQGG
GYFTDCEPDVMLTEVHRQAQDDPIVRLSMDVREGRRLELGRYGETEVVTR
DSLDPQRVMDADQVLVGRNNTRRAYNARFRQRLNIEDPLPVGGDKLVCLR
NNRKKALFNGGLWRVKSRAPTKSKIITLRVTPDEDFGGRLTKVSVRNECF
AGGIEDISWDQRKPYDEFDYGYVLTVHKSQGSQWDDVVLFDESFAFQDSR
ARWLYTGITRAAKRLSVVV
>RPB_0439 endonuclease III
MSKITRRVAAPAAPRTAKTTPKSLAANPGQTGGKPAKPPKRPRRWTPDEV
REAFTRFARANPEPKGELEHLNPFTLLVAVVLSAQATDAGVNKATRSLFA
IADTPAKMLALGEERVREHIKTIGLFRTKAKNVIALSQKLLSDFGGQVPS
TRAELETLPGAGRKTANVVLNMAFGQPTMAVDTHVFRVGNRTGLAPGDTP
LAVELGLEKAIPPEFMQHAHHWLILHGRYTCLARKPRCEVCLIVDLCRWP
EKSV
>RPB_0848 DNA polymerase I
MPKSPSKAAAAPAANSPAPAAAKAPGTGDHIFLVDGSSYIFRAYHALPPL
TRKSDGLQVNAVLGFCNMLWKLLREMPPDNRPTHLAIIFDKSEHTFRNQL
YPDYKAHRPPAPDDLIPQFALIREAVRAFDLPCLEQSGFEADDLIATYVR
EACERGATATIVSSDKDLMQLVTDCVTMYDTMKDRRIGIAEVIEKFGVPP
EKVVEVQALAGDSVDNVPGVPGIGIKTAAQLINEYGDLDTLLARAGEIKQ
PKRREALIENAEKARISRQLVLLDDKVKLDVPLDELAVHEPDARKLISFL
KAMEFTTLTRRVADYSQIDPSDVEAEAALKSSPLPLAGEVGARSATGGGT
STGGDLFSGQVPSPQPSPAGGRGSAPHSAEGGPLNAGRGRDGQPGEVLSP
QILAAKRAEAARKIPVDRTAYKTVRTRDELQGWIARIHDAGAFAVDAIAT
SIDPMQAELCGIALSLGPNDACYIPLGHRQTGDGSGLFAAGLAPDQLGAR
DVLDALRPLLDSAGLAKIGFNIKFTAVLLAQHGVTLRNIDDVQLISYVLD
AGRGSHGLDALSESNLGHTLHVLGALTGSGKAKIAFDQVPIDRATEYGGE
RSDVALRLWRVLKPRLVAERMMAVYETLERPLVGVLARMERRGISIDRQV
LSRLSADFAQTAARIEAEIRELAGEDINIGSPKQLGDILFGKMGLPGGSK
TKTGAWSTSAQVLDELAEQGHEFPRKILDWRQVSKLRSTYTDALPTYVHP
QTQRVHTTYALAATTTGRLSSNEPNLQNIPVRTEDGRKIRRAFVATPGHR
LVSADYSQIELRLLSEVADVPALRKAFQDGIDIHAMTASEMFGVPVEGMP
SDIRRRAKAINFGIIYGISAFGLANQLGIPREEAGAYIKRYFERFPGIRA
YMDETRDFCRTHGYVETLFGRKCHYPDIKASNPSIRAFNERAAINARLQG
SAADIIRRAMVRMEDALAEKKLAAQMLLQVHDELIFEVPEDEVTATLPVV
SHVMQDAPFPAVILNVPLQVDARAADNWDEAH
>RPB_2605 Uracil-DNA glycosylase superfamily
MCPRLAEFRHELRAREPGWHNAPVPSFGDADAALLIVGLAPGVQGANRTG
RPFTGDYAGDLLYATLIDYGFATGQFQARPDDGLRLVGCRISNAVRCVPP
QNKPLPVEINTCRRFLAATIETMPKLRAIVLLGRIAHDSTLKALGLRASQ
APFGHGAVHDAGALRLYDSYHCSRYNTNTRVLTPKMFQDVFARVRADLDA
>RPB_2898 exodeoxyribonuclease III
MMASCNEQPCNCRPTHAFPRGASEEAPLKIATFNVNNVNKRLPVLLGWLK
AAKPDIVCLQELKAAQDDFPEAALLKAGYSAAWVGQKTWNGVAILARKRA
EIVVTRRALPGDAKDLQSRYLEAAVAGMIVGCLYAPNGNPQPGPKFQYKL
AWMKRLNRHAAKLLKSGVPVVLAGDFNVVPTPADIYPTRSWDKDALLQPE
PRALFAALLKQGWTDALRALHPEQAPYTFWTYWRNRFERDHGLRIDHLLL
DPASAQRLARGGVDRAIRGAPDASDHAPAWIVLK
>RPB_4146 excinuclease ABC, B subunit
MRMKPRSRTLYSARAPPHIAGMAKTPDQSAKPTSKAPTSKAPKSKPPNSK
AHRPDVQPIGPALAELLNPAINRGDAGMGSGTGLQPPPDNSRDRRTGGEA
AVHRGRASTAKTVGDEAAPRPTPLQPAPQPPGARRGGFDEAPQATYGTAA
TIPTLDPELARQLGLPTEEDDAAAMARPPRNKMEALGVQATAEALEALIR
DGRPEFKGDDGNVKLWVPHRPPRPEKSEGGVRFVIKSDYEPKGDQPTAIK
ELVEGIARNDRTQVLLGVTGSGKTYTMAKVIEATQRPAIILAPNKTLAAQ
LYGEFKSFFPDNAVEYFVSYYDYYQPEAYVPRTDTYIEKDSSINEQIDRM
RHSATRALLERDDVIIVASVSCIYGIGSVETYTAMTFALKKGERIDQRAL
IADLVALQYKRTQADFTRGTFRVRGDVIDIFPAHYEDRAWRVKMFGDEVE
AIEEFDPLTGHKQDELEFVKIYANSHYVTPRPTLIQAIKSIKSELKWRLD
QLHAQGRLLEAQRLEQRTTFDIEMMEATGSCAGIENYSRYLTGRRPGEPP
PTLFEYVPDNALVFADESHVTVPQIGGMFKGDFRRKATLAEYGFRLPSCM
DNRPLRFEEWDMMRPQSVAVSATPAAWELNESGGVFVEQVIRPTGLIDPP
VDIRPARTQVDDLVGEVRATANAGYRSLITVLTKRMAEDLTEFLHEQGIR
VRYMHSDIDTIERIEIIRDLRLGAFDALVGINLLREGLDIPECALVAILD
ADKEGFLRSETSLIQTIGRAARNVDGKVILYADHVTGSMQRAMDETGRRR
EKQIEYNTAHGITPESIKKSIGDILGSVYERDHVLVEIGDGKGSGFTDDA
AVIGHNFGAVLADLETRMREAAADLNFEEAARLRDEVKRLRATELAVSDD
PTVKQRGVAAKAGSYKGDKQFGASANLPKLSTERGGNNTPRSKVHKPDLD
EMGIAGWHEVKKVQRAKPRKPTLDEMGPGTESKIFQPKNSRESGPEFGPA
PRSSGGAPGHRGGWKKR
>RPB_4107 hypothetical protein
MVRGRVGLAVVIATGVTASQPAAFAGSWTLQEGQGYGYITATASAANTAF
DGAGAQHSIPRYRKAEAQALIEYGVTDWFTMIISPSLQHVDIAAPVDASR
SGFGYTDLGGRVRLWAGGSWVVSAQTTFRIPGTFDKSNAAAIGYSDSEID
VRGLVGYSTAVGGLPAFVDVQIAQRFRLGGPPDEFRADITFGIRPQERWL
LLAQSFNVVSEGVGSWGYASFAYHKLQLSAVYALTPTLSLQAGGYTTYTG
RNALQENGLVVGAWFRF
>RPB_1177 excinuclease ABC, C subunit
MNHDPAETRDTAAAPLADTESPSPVSPELTPHPAPAAQDIDTATAELTVD
EDDEARLPEIEDDSAEVADGPLAVGRAAIEQAVRLAPTSPGVYRMLNAAH
DVLYVGKAKNVKKRLSSYARPTGHVMRIARMIAATVTVEIISTSTETEAL
LLEANLIKQLRPRFNVLLRDDKSFPYILITGDHWAPQILKHRGAQSRPGR
YFGPFASVGAVNRTITALQRAFLVRSCTDSFFESRTRPCLLYQIRRCSGP
CTGEVDFPGYTELVREAKDFLSGRSRAVKQELAVEMEKASNELEFETAAL
YRDRLAALSAIQSQQGINPRTVEEADVFAIYQEGGYSCVEVFFFRTGQNW
GNRAYFPRAEKSFTPEEVLASFLAQFYDDKPPPKLILLSHDIEDCALLAD
ALCIKADRKVEISTPKRGEKKELVAHALTNAREALGRKLADTATQTRLLQ
GLATTLGLPKPPQRIEVYDNSHIQGTNAVGAMIVAGPDGFIKNQYRKFNI
RSEGLTPGDDYAMMREVLERRFKRLAAAKAEGEAAKPNDDETPQWPDLVI
IDGGRGQLNAARGVLTELGLDAEVTLLGVAKGPDRDAGRETLFMPEREAI
KLEPRDPVLYFIQRLRDEAHRFVIGSHRKLRKKDIREAGLQEIPGIGPSR
KRALLHHFGTLKEIERASLGDLGKVPGISAESARRIFDFFHPGPG
>RPB_4617 ATP dependent DNA ligase
MNRFAELLDRLAYEPGRNNKLRLITNYFRATEDPDRGYALAALTGALSFR
HAKPGLIRTLIAERTDPVLFGLSYDYVGDLSETVALMWPAPRGRASSPPP
CGEGACPGLDPGSGVGVDNGSFSSAHPHPTPLPQAGEGARSPSGEHTSPL
SDAATKAGHNNPPPPTLTDIVTTLHSLGKAELPAQLARWLDELDETGRWA
LLKLVTGGLRIGISARLAKTAAAALGDKDPHDVELVWPGLEAPYLDLFAW
LDGRGPQPVNRDPAPFRPVMLAHAVEDADFEAMTPADYIAEWKWDGIRVQ
AVSGIGDDGETVVRLYSRSGEDITMSFPDLLPSLRLPGAIDGELLVLREG
RVQSFNVLQQRLNRKSVTPKLIKEYPIHLRAYDLLGDGDADLRIQPFVDR
RARLERFIARLDDPRVDLSPTVAFDDWDGLRAARRDPASAGAGLDADAVE
GVMLKRRDALYLPGRPKGQWWKWKHDPHIIDAVLMYAQRGHGKRSSYYSD
YTFGVWTEGDDGDQLVPVGKAYFGFTDEELLQIDRFVRRNTTEKFGPVRH
VVHEPDQGLVLEVAFEGLQRSPRHKSGVAMRFPRISRLRWDKPPRDADRL
ATLERMLKADTAGPEKAAPSSH
>RPB_0813 HhH-GPD
MDARVKPAHDGASELKSTMTIHLDTQADLEAAITNLVKQDKRLRPVLKTA
GMPALRRRDPGFRGLAAIVCGQQLSVASAAAIWARVDAAFDPFDHAAIQR
ARSDRLGRLGLSAAKIKTLKALAKELHAERLNLDVLANEDADIAHTTLTA
LHGIGPWTADIYLLFCLGHGDAWPAGDLAVQEAMRIGLGLEARPSVKQMA
PLAEPWRPLRGAAAHLWWAYYHAVKKRDGVIAGKAKTATA
>RPB_0628 conserved hypothetical protein
MRVFSVPPSAPFLRTTIEALVDGRLIEGFDARAKPERLAEATLYLPTRRA
GRLARDIFLDVLGTDAVLLPRIVPLGDVDEDELAFAQAATGAADLDIPPA
LDGLPRRLLLAQLIAAWAKGLRPGDPQQSPLVVGGPASTLALADDLARLI
DDMATRGVDWAALDMLVPDAFDRYWRLTLDFLKIAGQWWPLHLRETDRIE
PAARRDLLIEAEAARLAAHRGGPVIAAGSTGSMPATARLLHAIAQLPHGA
VVLPGLDTELDEAAWQMIGAVHDKQGKLISPPSPNHPQFAMHGLLARMGL
ERRDVLRLGEGERHGREVLASEMMRPSSATAAWHDRLADPAIDQLIGDGT
HGLTLIEAPNSEIEALTIAVVLREARERGQSAALVTPDRALARRVVAALG
RWKLPVDDSGGDSLMDTQAGIFARLAAETALHGCEPATLLALLKHPLLRL
GRAAYGWRSAIETLELALLRGTRPAAGTEGLAKEFARYRAELTKLNSGEL
SALHRAEPRARLGDEALDEAHALIVALRAALAPLESVGVEPIDLCAFGQR
HRAVLIALSIDHDDNAVAFEGPQGSALLKAFDDLAEVEPLSGVMVPPHDY
PELFETAFSDRIVRRPELAGAALRIYGPLEARLTQHDRVVLGGLVEGVWP
PAPRIDPWLSRPMRHELGLDLPERRIGLSAHDFAQLLGANEVILSHAAKV
GGAPAVASRFLHRLEAVAGKARWSDIKARGATYLDYALALDRPDQVTPIA
QPAPKPPREARPLKLSVTAIEDWLRDPYTIYAKFILGLSALDPVDMPLSA
ANRGSAIHEALGDFTERFPDALPDDPAGLLREIGEKHFAPLMDHPEARAL
WWPRFARIAAWFGNWEQGRRADGRRVFAERDGSLSIPLDGGRNFVLTARA
DRIEHRPDGSYAILDYKTGNPPSSKQVRLGLSPQLTLEAAILRDGGFQDI
DAGASVSELMYVKLSGNSPPGRELPVKLAVGNETPQSPDDAAIEARAKLA
ALVRQFDDEAQPYHALVLSMWTQRYGRYDDLARIKEWSAAGGAGEERR
>RPB_2601 DNA polymerase III, alpha subunit
MSQAGFVHLHVHSAYSLLKGSMKIARLADLAKADHQPALALTDTDNMFGA
LEFSDKLAGSGIQPIVGLELGIDFGDQDPTSRNAALAAPARVVLLATRER
GYRSLMRLNSRAFLETPVNQPPHIKFDWLDGETDDVIALTGGPEGPISLA
MLTDPALGRLRCERLAQAFGDRLYVELQRHNTDVERRAEAGLIDIAYDMG
LPLVATNEPHFATADDFEAHDALLCIASGKLIAETDRVQLTPDHRFKTRA
EMAVLFADLPEALASTVEIAQRCAYRPLTRKPILPLFTVGASVNDAEEAA
AAEAAELRRQAEQGLADRMRVHGLSQGMTEEDYQKRLAFELDVITRMKYA
GYFLIVSDFIKWAKAHGIPVGPGRGSGAGSLVAYSLTITDLDPIRFGLLF
ERFLNPERVSMPDFDIDFCQDRRGEVIEYVQHRYGRDQVAQIITFGTLQA
RGVLRDVGRVLQMPYGQVDKLTKLVPQNPAAPVSLKQAIESEPKLQAFRD
EDPVVARAFDIAQKLEGLTRHASTHAAGIVIGDRPLSDLVPMYRDPKSDM
PVTQFNMKWVEPAGLVKFDFLGLKTLTVLDVAVKLLKQRDIHIDLATLGI
EDPVSYQMLARGDVVGVFQVESQGMRRALVDMRPDRFEDIIALVALYRPG
PMANIPTYCARKHGDEESEYLHPMLEPILKETFGVIIYQEQVMQIAQVMA
GYSLGEADLLRRAMGKKIRAEMEKQRAIFVEGATKNGVPKDSADTIFDLL
AKFADYGFNKSHAAAYALVSYHTAYMKAHYPVEFIAASMTLDLNNTDKLS
EFRAEAQRLGIKVEAPSVNRSGPTFEVGANTIYYALAGLKGVGLQAVQMI
VEARGDKPFASLADFAARVNPRAINKRVIESLAAAGAFDCLDSNRARVFA
GADAIIAACQRSHEAATSGQNDMFGGLADAPQVVLPQIEPWLPAERLRRE
YDAIGFFLSGHPLDDYATALKRLRVQSWAEFCKAVKSGATAGKVAATVVS
RMERRTKTGNKMGIMGLSDPTGHFEAVLFSEGLAQYRDVLEPGAAVLLQL
GAELQGEDVRARVLHAEPLDAAAAKTQKGLRIFLRDTKPLDSITKRLQPP
ESKVSGGNIALVLRLDPHTEVEFELPGRFQVSPQIAGAIKAVTGVELVET
L
>RPB_0619 formamidopyrimidine-DNA glycosylase
MPELPEVETVRLGLQPAMEGFRIDRAMANRCDLRFPFQPDFAARLTGQTI
TGLGRRAKYLLADLSSGDVLLMHLGMSGSFRVVNGAGDATPGEFHHPRSE
DRTHDHVVFEMSSGARVIFNDPRRFGFMKIFARAAIDDEPHLKGLGPEPL
GNAFDAAMLARACAGKQTSLKAALLDQRVVAGLGNIYVCEALWRAHLSPK
RKASTLADRKGAPTDRAVRLVDAIRAVLGDAIKAGGSSLRDHRQTSGELG
YFQHSFAVYDREGERCRTPGCNGTVKRLVQNGRSTFWCSGCQT
>RPB_1059 NUDIX hydrolase
MRAPVLAAGGIVLRRGGEPLFAVVRMRKRNDWVLPKGKLDDGETPRQAAM
REVLEETGHLVEVHEFIGTLACEAGGRTKVVHFWRMEAAPVQTHPLMKDI
RAVDWLPLHQAVERLTRIHERAFLAHVGPLVLDTAARTAPPLAAAQHRAP
FDDQPLDDQPLAELTVSPSLALEQPHDAQPTMLQRIRNWWRGTAR
>RPB_2410 DNA-directed DNA polymerase
MNSASPPGPLCFCRDCLADNATAARRCAACGSPRLARHRALPALTLAHID
CDAFYATVEKRDNPELADRPVIIGGGKRGVVSAACYIARTFGVRSAMPMF
KALALCPSAAVVRPDMAKYVRVGREVRQAMLQLTPLVEPLSIDEAFLDLS
GTERMHGTIAAKVLARFARDIERDVGITVSVGLSCNKFLAKITSDLDKPR
GFATLDQDDARAMLGPRPVGFIFGVGPATAARIAQHGFRTIADLQKADEI
ELMRQFGDEGRRLWRLARGIDDRKVVPDRGAKSISNETTFETDIRDFETL
ERILWRLSEKVSSRLKGAALAGSTITLKLKTGDFRQRTRSQTIHAPTQLA
GRIFAISRDMLAKEIDGTAFRLIGTGVSALAPGSTAGDTDMIDRRSATAE
RAIDDLRKKFGAAAVIRGLAYDGPDKPRG
>RPB_2758 exodeoxyribonuclease III
MAPARIFEPTDNDMRIATWNVNSVRQRLDHLVSWLNECAPDVVCLQEIKC
VDEAFPREAIEALGYNVVTHGQKTFNGVALLSKYPLEEATPRLAGDDDDT
HARFLEGVVSLKRGVVRVACLYLPNGNPVESEKYPYKLRWMSRLLEYTQQ
RLKTEEPLILAGDFNVIPQPIDVHNPAGWVDDALFRPQTRESFQALLGLG
LTDALRASTDAPGQYTFWDYQAGAWQKNWGLRIDHLLLSPQATDRLRNVG
IDAYVRNWEKPSDHVPVWADFDLDAA
>RPB_1952 Protein of unknown function DUF1568
MTNYRRNAIAGGRFFFTVNLAERRLRLLTDHIDLLRAAFRETRQRHPFVI
DAIVVLPDHLHAVWTLPDGDRDFAARWRLIKAAFSRGLPTGERISESRAR
KAERGIWQRRYWEHTLRDDDDLARHIDYIHFNPVKHGHVARVADWPHSSF
HRMVARGVYSIDWAGDMDAPSDAFGERS
>RPB_2620 DNA topoisomerase IV, A subunit
MGKRLIPPEPAEIHEVQLREALEERYLAYALSTIMHRALPDARDGLKPVH
RRILYGMRLLRLDPGTPFKKSAKIVGDVMGSFHPHGDQSIYDALVRLAQD
FSSRYPLVDGQGNFGNIDGDNPAAYRYTEARMTDVARLLLDGIDEDGVAF
RPNYDGQAKEPVVLPGGFPNLLANGAQGIAVGMATAIPPHNAAELCDAAL
HLIDKPDAKTKALLRFVKGPDFPTGGIVIDSKESIAEAYTTGRGAFRTRA
KWMQEEGARGTWVVVVTEIPWLVQKSRLIEKIAELLNEKKLPLVGDIRDE
SAEDVRVVIEPKSRAVDPALMMESLFRLTELESRIPLNLNVLVKGRIPKV
LGLAECLREWLDHLRDVLLRRSNYRKAQIEHRLEVLGGYLIAYLNIDKVI
KIIRTEDEPKPVLMKAFNLTDVQAEAILNMRLRSLRKLEEFEIRTEDKNL
RAELKGINAILKSETEQWAKVGEQVRKVREMFGPKTPLGKRRTQFADAPE
HDLAAIEEAFVEREPVTVVISDKGWVRTLKGHVADLSGLNFKQDDKLDRA
FFAETTSKLLLLATNGRFYSLEVAKLPGGRGHGEPIRMFIDMEQDAAIVA
MFVHKGGRKFLIASHDGQGFVVGEDDCVGTTRKGKQIINVEMPNEARALT
VVGDGSDNVAVIGDNRKMLIFPLDQVPEMARGRGVRLQKYKDGGLSDIVT
FVAKEGLSWRDSAGREFSATMKELAEWRGNRADAGRMPPKGFPKSNKFGR
GIE
>RPB_2324 AAA_5 ATPase
MSPKRPTPSSNLFAAAGLEREAPRPLPDRLRPRVLADVVGQDHILGPDGA
LTRMLATRTLGSLVFWGPPGTGKTTVARLLADATELHFEQISAVFSGVAD
LKKVFDAARARREMGRGTLLFVDEVHRFNKAQQDSFLPVMEDGTVVLVGA
TTENPSFELNAALLSRARVLVFQSLDAAAIEKLFAHAEAAEGRKLPLDAE
ARAVLVRMADGDGRASLTLAEEVWRSARDGEIFNAAQLQDILQRRAPIYD
KSADGHYNLISALHKSVRGSDPDAALYYLCRMFDAGEDPLFLARRVVRMA
VEDIGLADPQALVICNAAKDAYDFLGSPEGELAIAQAVIYLATAPKSNAA
YTAYKAAMRAAKQGGSLLPPKHILNAPTGLMKSEGYGGGYQYDHDTPEGF
SGQEYFPDALGHQTFYDPPDRGFEREIRKRLDYWAKLRAAKDNS
>RPB_1917 ErfK/YbiS/YcfS/YnhG
MMNNRILTLLATVAAISAGTSVVHAQNYPSAPGSYVTPAPGDYRQEMPNF
DNVDDEDGIGSSAALPPPGLVTSPDDPRYGRPSSAPVYSDRAPVPQGPVM
SPDDPRYGRPMGAPPVYSERAPVPQGPVMSPDDPRYGRPAGPPSVIYSNR
GDGSLRPPEGVAGAGQPGVPQVATGSVPAAPQIGADGRPLQVAALPPEEQ
PDADQEFQLPQHLRRQEVAFPTKEPAGTIVVDTGNTYLYYILGNGRAMRY
GVRVGRDGFTWNGVQKVSRKAEWPDWHPPTEMIERQPYLPRFMAGGPGNP
MGARAMYLGSTVYRIHGTNQPSTIGKFVSSGCIGMLNDDVSDLFERVKVG
TRVVVLPGGAPPTPTASAQSPQPVASAQPPQQSLQMSVPGTQPTSVAPLP
PPVTIR
>RPB_2534 hypothetical protein
MSAEVKRFVHDEANTERIRVAMRAAIANIETNLVPVERLQPRTRLALAVS
LLGGDHAPRKQKFTAGLRNELLKVDADQRHYWLSTFYTLLMSATLRRDMA
TFFTPPAIVRHLLARAENAGLDLTTARVIDPAAGGAAFVSTLAGRMTELG
CKTDDIKKRLSGIEIDEHLALLGEILLRDRLNETRAAARRSIQVGDSLKI
AKTAFYDAVFVNPPYGRLLGLGPQLPESWLAFAARGHINRYALFIDLAFR
MAKPGGLVATVTPSSFLAGSLFQRLREYIRSKAEVVRIDILERKDVFHDV
QQDACVSVFRMRSQSACLPAFVPKLGRVDRNWHFQEIGTITAASSAQGAP
WVLPERADGSDEALRSCRSRLSDYGVTPKAGYFVWNREKERLQSGRKFGT
DFPLIWARNIKPGDPCKPRSKSGTGIDFVSFDKDNPGIIRRSAIILQRTT
NSRQPRRLVAAVIPRQVVKRHKGFVAENHTILLIPHERSNLSLLCKLLNS
KAVDKRFRCIGGTSSISISALKDLPLPDPRDMRTAMSRIKDFETAVEVAY
EASRKRKTVERAA
>RPB_4271 Holliday junction DNA helicase RuvA
MPLGDSDIKIAPPRSGCMIGKLKGIIDSYGEDYVVLDVHGVGYQVHCASR
TLQALPAPGEAAVLSIETYVREDQIKLFGFRTDTEREWFRLLQTVQSVGA
KVALAVLSTLPPNDLANAIALRDKAAVARTPGVGPKVAERIVTELKDKVP
ALGNVDPAVVHLSGALDDHRAPRPVTDAISALVNLGYGQPQAAAAIAAAS
RAAGDDAATAQLIKLGLKELSK
>RPB_1342 Ribonuclease H
MSGALSEAGAGPRPVVIHTDGACSGNPGPGGWGAILKFGDTEKELKGGEA
HTTNNRMELLAAISALEALTRPCTVDLYTDSQYVKNGIGSWIHNWKRNGW
KTADKKPVKNVDLWQRLDAALKSHQVRWHWVKGHAGHDENERADQLARDG
LTENRMKSRIG
>RPB_2715 excinuclease ABC, A subunit
MDEVIKAKRQPPQRPSVASSRTAITIRGAREHNLKNVDVVIPRDKLAVFT
GLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLEMMQKPDVDQIDGLS
PAISIEQKTTSKNPRSTVGTVTEIYDYMRLLWARVGVPYSPATGLPIESQ
TVSQMVDRVLALPEGTRLYLLAPVVRGRKGEYRKELADWLKKGFQRVKID
GAFHELAEAPVLDKKFPHDIDVVVDRIVVRPDIGQRLAESFETALKLAEG
LAVIEYADAPATPPAAAVEPGPDEPGDKKKKADKKVAKIHDKTGAERILF
SEKFACPVSGFTIPEIEPRLFSFNNPYGACPECGGLGIEQHIDADLVVPD
KELTLRKGAIAPWAKSSSPYYLQTLTALAKFYKFTLDTKWKDLPKKVQTA
LLFGSGDDEIKFSYEDGVRSYDTKKPFEGVVTNIERRFRETESEWAREEL
GKYFSDVPCEACHGHRLKPEALCVKIGGKHIGNISELSVKAAGEWFEAVP
ASLNTQQNEIAVRILKEIRDRLSFLLDVGLNYLTLARAAGTLSGGESQRI
RLASQIGSGLTGVLYVLDEPSIGLHQRDNARLLDTLKRLRDLGNTVIVVE
HDEDAIRLADFVLDIGPGAGVHGGHIVAQGTPDEVMANPKSLTGKYLTGE
LSVPIPERRPPNHRRTLKLVNARGNNLKNVTAEIPLGLFTCVTGVSGGGK
STLLIDTFYKAIARKLNNASEPPAPHDRIEGLEHIDKIIDIDQSPIGRTP
RSNPATYTGAFTPIREWFAGLPESKARGYEPGRFSFNVKGGRCEACQGDG
VIKIEMHFLPDVYVTCDVCKGKRYNRETLEVLFKGKSIADVLDMTVEEAA
DFFKAVPRVRETFKTLHRVGLDYIHVGQQATTLSGGEAQRVKLAKELSKR
ATGRTLYILDEPTTGLHFHDVAKLLEVLHELVAQGNTVVVIEHNLEVIKT
ADWVIDLGPEGGDGGGEIVAWGPPEDIVKAPRSYTGKFLKPVLEKKGPAK
ATKRKTDEAAE
>RPB_2458 replicative DNA helicase
MAAIDSNVLKLAPDATAPAYRTAPHNIEAEQALLGAILVNNDAFYRVSDF
LEAKHFFETIHQTIFETATSLIRAGKVATPITLKTFLAADLDLGGLTVAQ
YLARLAAEATTIINAHDYGRTIYELSLRRDLIGIGTDMVNVAFDAPVDFA
PRNQIEDAERRLYELAESGRYDGGFQRFSQALTTAVDMAAKAFQRDGKLS
GIATGLRDLDTRMGGLQHSDLIVLAGRPGMGKTALATNIAYNVAKAYRGE
VQADGTTKAVNGGIVGFFSCEMSAEQLATRILAEQAEIASSKIRRGGISE
SDFERIRDVSIELQSLPLYVDETGGLAISQLTARARRLKRQKGLDLLVVD
YIQLLQGSSKKGDNRVQEVTEITTNLKALAKELNVPIIALSQLSRQVESR
DDKRPQLSDLRESGSIEQDADVVMFVFREEYYLQNKEPRPGTPEHEKWAT
DMDLVHGKAEVIIAKQRHGPTGTVDLQFEGQFTRFSDLVSEGHLPERI
>RPB_1901 Excinuclease ABC, C subunit-like
MQDPGVEECFVYVLGCAGPNRYLTYVGWTLDLDRRLSQHNAGTGARSTRG
RRWVLIHSERFTSRREAMSREWHLKRDRAFRRSLAAKARGLKG
>RPB_2007 DNA repair protein RecN
MLSRLSIRDIVLIERLDIEFSRGLAVLTGETGAGKSILLDAFALALGGRG
DAALVRHGAEHGQVTATFDLAKGHPAFGILSANGLDDREIEDSGELILRR
IQLADGRTRAFINDQSVSVQTLKSVGATLVEIHGQHDERALVDAATHRRL
LDAFAGLEKDVAALETLWEGRRSARAALDAHRAGMERAAREADYLRHASD
ELKKLAPQDGEETVLAERRSVMMQGEKIASDLREAQDAVGGHHSPVAALA
AAVRRLERRAGSAPQLVEPAVRAIDAAINALEEADQHLNAALAAADFDPL
ELERIEERLFALRAAARKYSTPVDGLAALATQYAADVALIDAGADRLKAL
EKAAGDADARYGAAAAKLSASRSKAADKLNKAVNGELAPLKLERAKFMTQ
VEADPATPGPQGIDRVEFWVQTNPGTRPGPMMKVASGGELSRFLLALKVV
LSDKGSAPTLVFDEIDTGVGGAVADAIGGRLARLATKVQVMAVTHAPQVA
ARADQHLLISKAALDKGKRVATRVAALEQDHRREEIARMLAGAEITAEAR
AAADRLIKAAG
>RPB_3478 ISSpo8, transposase
MKSFLNAKHLQNEEAAYAWVEARIWPNGPVCPHCGGVDRISKMQGKSTRI
GAYKCYQCRKPFTVKVGTIFESSHVPMHLWLQAIFLLSSSKKGISSNQLH
RTLGCTLKTAWFISHRVREAMRDGGLAPMGGAGGIVEVDETYFGKTKEKK
PSPQRKGRPFIHRGGGPSGKRAIVSLVERGGKVRSFHVENADKPTVVGIV
TANVAKESRLHTDESRLYIGADQHFSSHETINHTAKEYARGDVTTNSVEG
FFSIFKRGMKGVYQHCGENHLHRYLSEYDFRYNNRVALGVNDYERADRVL
AGVVGKRLTYQTTR
>RPB_1070 A/G-specific adenine glycosylase
MITADDDGASGGRPAALLVWYDRHRRVLPWRPPAGVAADPYAVWLSEIML
QQTTVRAVGPYFEKFMARWPSVTALGQASLDDVLRMWAGLGYYSRARNLH
ACAVAVATQHGGRFPDTEDGLRALPGVGPYTAAAIAAIAFGRQTMPVDGN
IERVVSRLYAVEDEMPKAKPRIQELARTLLGPSRAGDSAQALMDLGATIC
TPKKPACALCPIDDDCAARRRGDAETFPRKAPKKTGALRRGAAFVVIRGD
QVLLRSRVAKGLLGGMTEVPNSDWLSDQDDAAARAQAPAVTGATRWHRKA
GVVSHVFTHFPLELVVYTAQAPAGTHAPKGMRWEKIATLAGEALPNLMRK
VIAHALD
>RPB_4236 methylated-DNA--protein-cysteinemethyltransferase
MTAYNYAMFDTALGRCGIAWGDRGVVAVQLPQPSEAQTRARIAQRQGAID
EAAPPAPVQDAIDGIVALLAGQPIDLTHIALDLDGVSEFQRGVYAIARTI
PPGHTLSYGDIAKRLGGVELAREVGQALGRNPVPVIVPCHRVLAAGGKPG
GFSANGGVATKLKLLSIEGAAVNYTPSLFD
>RPB_2978 DNA topoisomerase IV, B subunit
MAKALKASSKSKPASDLFGAAAKSGAPRAAAKPTGGAEAGYTAADIEVLE
GLEPVRRRPGMYIGGTDEKALHHLFAEVIDNSMDEALAGHATFIEVELGA
DGYLTVSDNGRGIPVDPHPKFPKKSALEVIMCTLHAGGKFDSKVYETSGG
LHGVGVSVVNALSSLLEVEVARGQQLYRMVFARGIPQGKLESLGKINNRR
GTRVRFKPDTDIFGAKAAFKPQRLFKMARSKAYLFGGVEIRWKCDPELLK
GVEDVPPEDTFHFPGGLKDYLGAAIHADTLVHPDIFSGKSGRNGAHGACE
WAVAWTADADGFLSSYCNTVPTPDGGTHESGMRSALLRGLKDHAERVGQG
KRASSITSEDVMVGAAVMLSVFVREPEFQGQTKDRLATAEAQKIVEQAIK
DPFDHWLSGNPVQANKLLDFVVERAEERLRRRQEKEISRKTAVKKLRLPG
KLADCTNTAAEGSELFIVEGDSAGGSAKQARDRKTQAVLPLRGKILNVAS
ATKDKVVANAQLSDLMQAIGCGTGVNYREEDLRYARIIIMTDADVDGAHI
ASLLITFFYRQMPKLIDEGHLYLAVPPLYRLTHGAKTVYARDDAHKDELL
KKEFNANAKVDVGRFKGLGEMMPAQLKETTMDPARRTLLRVSLLDIDRDG
TADSVERLMGTKAEARFAFISDKAEFASEDLLDV
>RPB_4639 conserved hypothetical protein
MPAHSRPYPFVDRLIETFAEWLKHRRDVSEMCQFDAAEFSRIAHDLGVTS
TDLDELVRQGPHKVEELPQLLKALGISEEAIARTQPLVMRDLERVCALCR
HKSECDHDIADGSLAQHYQAYCANKVTLDALAEELANTPPLSARH
>RPB_1438 Endonuclease/exonuclease/phosphatase
MPANQRNISFATFNLYNLQLPDQPMYPKSRPYTQEQYDAKIAWIGSMVQR
LDADVIAFQELWDRRALEAAFQAAELSDRYAFAYIKEGAWDGIAVAAAVR
KPWEIAGVKRHKAFPQGFRLKKRKHTMTALRANPPQADESIVPDENDEFG
PSHEDERIDVSISEFSRSPLQVTVTHGTARSPSVPPIQVFCTHLKSKLST
PLDDEEYKDPDIRPHKDALGGALSAIRRTAEAAALRIILNDTMRDTDDPT
IVLGDVNDGQFSNVLSILSGQPTFRVVAGSRAGARSDAGLYTGVTLQQLR
SLGDVYYTHEFKNVREVIDHALVSEQFYDYSDKRLWTFREMQFFNDHVAH
ASHAESDHGQVRIWFQWVPADRRD
>RPB_1073 DNA methylase N-4/N-6
MILSRRGASARAPRTQFESAPENRIIVGDCVAEMSKLPAKSVDLVFADPP
YNLQLKGALKRPDESQVDAVDDDWDKFSSFAAYDDFTRAWLLAARRIMKP
SATIWVIGSYHNIFRVGAIMQDLGFWVLNDIVWRKTNPMPNFRGRRFTNA
HETMIWAARDENAKGYTFNYDALKASNEDVQARSDWLIPLCTGDERLKGK
DGKKVHPTQKPEGLLARVLLSSSKPGDLVIDPFNGTGTTGAVAKRLRRNY
IGFERDRTYADAARARIDAVEPLPEDTLKPFLTARDAPRVAFSELIERGM
ISPGAKLVDSKKRHGALVRADGAIMLGDKVGSIHRIGAMAQGSEACNGWT
FWHVETTKGLRLIDELRAEVRSAMAVG
>RPB_2354 NUDIX hydrolase
MSSETPVARPASTIMLLRDRPDTFDVFMMVRHYQIEFASGALVFPGGSVD
AGDRDIIGRPELYCCADATAEPALDFQIAAIRETFEESGILLARPLGSDQ
LVAASRAAEIEALHRTALCESRISFAQILADHDLVLALDLLVPYARWITP
EKLPKRFDTWFFLAEAPPEQLGMHDGKESTDSIWLSPQEALDGGDSGRFT
LPFPTTRNLIRLGKQPNVRQALADSRGKPIVTVMPIMSRDGDKRTLRIPA
EAGYDGEVFEFTGS
>RPB_1032 SNase-like nuclease
MVAVIFVLALLLGTPAFAADAVIKDAATLQLGGVTYRLEGIDAPELDQRC
LSEFADPSACGIEARDAAAKLIAGRKVNCRDLGPDPVFKGRRIGGCAIAG
DDLGLSRRLVQAGLAFNSDSKGRFAADQSKAMDDHTGLWKGCFVAPENFR
RWDKTAPLRGAACRDDRQAETRSALFPDMPARPEGCTIKGKLAKRARITG
NVGVYQLPGCPSYAALIKLNRWFCSEDDARAAGFRKAYNCRIGAKR
>RPB_2429 Holliday junction resolvase YqgF
MPALILPLIEAAGHWPARGSLLGLDLGTKTIGVAVSDPDRRLATGIETVA
RKAFTADAQRLLALAAGRNACGFVLGLPLNMDGSEGPRVQSTRAFARNFA
RLTELPIGLWDERLSTAAVERELIANDVSRAKRAKIIDEHAAIYILQGAL
DRLATLNRAD
>RPB_3125 Phage integrase
MSTLIKRGRNWTATARLPDTFQGPAASKSISKTFQKKDAAKLWLSSTETA
MKLGNWRDPRLELKAYGPLGWPEKRFAEALDDYRIKVTPEKKGASQEVAM
LQMLAREEFAQKRIRDLMVSDFADFRDARDKAGKSASTIRNNLNTISAVY
EWLIHEKAVDIANPIASLRKRRRGVPQPTGHRERRLLDGEEEAIAQAIEE
LPVDPTRRQWRALFPLLLDTGMRLGEAISIECAWIRRDYGFVFIPDSKNG
SVRHVALSDRAYAGLLELTDGEPADSKVFRFTPWVAKDAWRNEIRVRAGC
QDLRIHDLRHEALSRMAARGAELKTLMRQSGHKTVAVLMRYLNPTPAEQR
ARLFPAKQNVELGQ
>RPB_0800 methylated-DNA--protein-cysteinemethyltransferase
MVEVAYTIFDTMMGRCGIAWGLDGVLVVQLAESREIDTRRRLLKQCPDAR
EARPTVGIDSAIEGVAAILRGAHWDFSDVRLDLGGLPAFDCRVYDILRDI
PRGETATYAEIAKRAGSPGALHAVGHAIRSNPFAVIVPCHRALPVAGDTS
GSSANGGAITRRRLLAIEGALATRGPSLFDVLLTATPRQADR
>RPB_4132 DNA primase
MRFTPQFLDELKARLLVSEVVGRRVKLKKAGREWKGLSPFQQEKTPSFFV
NDEKQAWFDFSSGKNGSIFDFIMQTDGVDFPEAVERLAAMAGLALPAATP
DAARQEQRRRSLYDVMEMAAVYFSENLASRAGARARGYLADRGILPSTQV
KFRIGYASPDRFALKEHLGKHGVSVDDMVEAGLLSAGDDIPVPFDKFRDR
VMFPITDIRGRVIAFGGRALEKDVAAKYLNSPETPLFHKGDNLYNLATAR
KAAHDAAGKSTPTGAASVIVVEGYIDVIAMVTAGFAATVAPLGTALTENQ
LQLLWKMADEPILCFDGDRAGQKAAYRAADLALPHLKPGKSLRFALLPEG
QDPDDLARAGGRLAIEEVIGAARPLADLLWSREAEGGSFATPERRAALEA
RINELANGIRDEVVRRYYRKDWAERLRAAFAPQGGFGGGFGGGFRAGGGA
RGGADSGRRFQPRGSFPQGGGRYAPFGRQTGLSSPPQGRGPYQVASPDLA
SSPIMRGQRSALSRREALILQSLLNHPWLLHDHLEEVAALEFAHPEAHRL
RAAIIAAFAADHHHGDDPAGQSEKLRADLAKAGLSEQLQRLERAITTHAV
WGAGPDAAPEDVLSTWQQLVALHRQSHSLLRELKDAELALGEDGSEANVA
WLRDVKARLSEVEGTEALIEGFGQSSGRFHRSV
>RPB_1172 conserved hypothetical protein
MRVIGGRLRGRNLVAPSSRDIRPTADRLRESLFNILMHAYGDPIGDARVL
DLFAGTGALGIEAASRGAKFTLFVDNGAEARALLRANVEALGLGGVSKVY
RRDATNLGPAHPVEPFSLVFLDPPYRMGFAEKALASLRDGGWLTPDALVI
VEEAKDAGFAAPDGFVELERRAYDDTEFAMLRFGTSE
>RPB_1701 2OG-Fe(II) oxygenase
MRKGSAPLAADLFENLFDGPRREDIAPGAALLHGFARAQELELMAVIEAV
VARAPFRHMMTPGGHTMSVAMTSCGRAGWVTDRRGYRYATHDPASELPWP
EMPDVLRELAVSAAAEAGFAAFTPDACLINRYAPGAKMALHQDKDEQDFA
APIVSVSLGLPAVFQFGGMARSDKPRRFELRHGDVLVWGGETRLVYHGVL
ALKDGEHPLLGRQRINLTFRKAL
>RPB_2680 DNA polymerase III, delta prime subunit
MSARKASTEIAAKSPRETTALFGHAAAEQALLDAYRSGRIAHAWLIGGPQ
GIGKATLAYRMARFVLAHRDPMADAVQGAATLDLDPSHPVVRHVAAEAHG
GLLTLERSVNDKGVLRNVITVDESRETIGFFGSTAAVEGWRVCIVDTVDD
LNASSANALLKVIEEPPQRSLFLLISNSPARLLPTILSRCRKLMLRPLSV
SDVIAAALEATDLSPGDAKLAEAAAASEGSVARALTLLGGDALTLQQKTT
ALLDSLPNVDPRALHALGEAIGGTDRTTLAAFVDGVDRWIAGRLRTGDAN
AELPRLARLAEVWEKIGRAARDTEAYNLERKPLVFSVFGLLAEAVR
>RPB_0260 NUDIX hydrolase
MARYEDLPYRTCVGMMLINRAGLVFIGRRAGGIEHVDDTHVWQMPQGGVD
PGEDTWEAAKRELYEETNVRSVEKIAEVPDWLIYDIPRTVAGRAWKGRYR
GQRQKWFAIRFTGQDSEIDIIAPPGHKSEFTSWRWEPMLNLPDLIVPFKR
PVYERVVKEFSQLAIAV
>RPB_4195 NUDIX hydrolase
MPALQTLRVTLEPVLRRVFHLYWRFARGMTLGARGVVLDEQGRVFLIQHS
YVGGWHLPGGGVEVGETFLDALRRELMEEGRIELTGDPELHGIFLNSHVS
PRDHVAVYVVRQFRQDRPPEPNREIVASGFFDVAELPPDTTRGTRLRIAE
VLDREPRRPTWR
>RPB_0638 integration host factor, beta subunit
MIKSELVQRIAEHNPHLYQRDVENIVNAILDEIVDALARGDRVELRGFGA
FSVKHRPARAGRNPRTGAHVPVDQKSVPFFKTGKEMRERLNRETGDTDTG
A
>RPB_0001 chromosomal replication initiator protein DnaA
MSNMEHDRWSRVKGRLRSSVGEDVYSSWFARMDLEAVQPESVHLSVPTRF
LKSWIQTHYSDKVLTCWQAELPEVCRIDLTVRSPMRAAVAKEAAAPVEHR
RAEHRPATETRSHATVPASSNHDALGGSPLDPRLTFASFVVGRSNTLAHA
AAKQVAEGRRGDPVMFNPLYIHSGVGLGKTHLLQAVTWAGNTGIERKVLY
LTAEKFMYGFVAALKTQTSLAFKEALRGIDVLVIDDLQFLQGKTTQAEFC
HTLNALIDAGRQVVVAADRPPSDLESLDERVRSRLAGGLVVEMAPLGEDL
RLGILKSRVVAARAHHASFDVPAPVLEYLARAITHNGRDLEGAINRLLAH
SKLNAQPVTLEMAEHEVRDLIRPQEPKRIKIEDIQRIVARQYNVSRSDLL
SSRRTANVVRPRQVAMYLAKTLTLRSLPEIGRRFGGRDHTTVLHAVRKIE
GLVSKDTTLSDEVDSLKRQLQE
>RPB_3306 Phage integrase
MPSQPAPLTPFAIANAKPKPTRYEISDGGHAGLRVIVQPSGIKSFVFRYK
RGTGEAAKNVRIMLGRAAGPGALTLRQAREAADSHRRLKLTGADPADQRR
VERAANLARIRAEEIENRRKDDTVALVLERYFKSHVNGLLSARETKRILT
RELSGWARRRIDHVSRADAVKLLEAIQERDKPILANRTRAHASKFFKWCI
EKGLLEINPFEHTTRAAKEIARDRVLSDAELRILLLANDRLEWPWREYIA
VLLMLGQRREEVAGMRWDALDLDCAEPVWLMAASRYKNGQPHAVPLPAAV
VSILRSIGRMHFTEIIDGAPTLKESPFVFTTTGRTAISGFSKAKVQLTGI
MHEIACGEAKARGESTATIEKIEWRLHDLRRTMATTMARLKINVVTIERV
LGHKMQGVMAVYQRYDYLPEKLHALTVWNDHIARIVAPQQSNVVRMTVAG
>RPB_0548 helicase
MPHSFSAPFTNAPFTNDRAPGAGVTAVLGPTNTGKTHLAIERMVAHPSGL
IGLPLRLLAREVYNKIVDRVGPDAVALVTGEEKIKPPKARFWVSTVEAMP
RDLDVSFLAVDEVQIAADLERGHVFTDRLLRRRGRDETLLLGAATMRPII
ERLLPGASIVTRPRLSQLEFAGDRKLTRQPRRTAIVAFSADEVYAIAELI
KRQHGGAAVVLGSLSPRTRNAQVAMFQSGDVDYLVATDAIGMGLNLDVDH
VAFASDRKFDGYQFRRLNPSEFAQIAGRAGRATRDGTFGTTGRCAPFEPE
LVNALQNHTFDTVKTLQWRNSTLDFASVAGLQVSLAETPRHDALTRAPVA
EDVRVLDHAARDAEVREMAHGAAAVERLWDVCQVPDYRKIAPAAHAELVT
TLYRFLMRKGRIPDEWFAAQVEQANRIDGGIDTLSARIAQIRTWTFVANR
ADWLADPEHWQGISRDIENKLSDALHERLTERFVDRRTSVLMRRLRENTM
LNTEIGKTGEVIVEGHVIGRLDGFTFAPDAAEAGSDAKALQATAQKALAG
EIESRAEKLSNAPDEQFVLTSDGTVRWTGDAVARLVGSDDVLRPRLRIIA
DDRLAGAPREAVQTRLDLWLKTHIEKILGPLFELGKAEDITGIGRGIAFQ
LIEALGVIERAKIATEMKDLDQPSRATLRKYGVRFGAYHIYVPSLLKPAA
RALASLLWAQKLDNVDMSALSGAQHLASSGRTSFPADKALDRDAYRVLGY
RLCGERAVRVDILERLADLIRPALAWREGTSGEKPAGAFDGRSFVVTQAM
TSLTGSAGEDFASILRALGYRMEKRPAPPPQPKVAETAPAAAAADAPAAA
SDTGLSAEDHAILAGAIAFEPAVTVEADIDTDTDQPAATEAAAEPVAEAA
AEATPELAAPAEPATDSPVETAAAAPTTEASATDAPAAEAVASEETASDE
TAPVADVAASDAPAPEAAPTETTVDATSAPTSEVAAPAQPDMVEVWRPGG
RSDEHRARPDRNRQRHRPQQGGQAAAPAEGEAAGEAKRDRPGGGRRGDRK
GGGDFRRDRPREGDGAPPQATAGEGRPPRERFKGRDNKFGDKFKGGGKGG
RDQGASHRQVASSAPPRERDRPIDPNSPFAKLAALKEQLTAGRKE
>RPB_4651 hypothetical protein
MRAPQMLRPARHRETQIRHRGGELRSKPSASLRSRRQRNVRLPYTVTATR
QDEKMQSVRNSSLIALAKARVWESEGWRVMIATPDGRQHDIAQLDELTAF
KPEKLTALSTILPADEAVSPKADTVDLAAADSPGFHIAEMHGPWPDGVHG
PWRPHSQDTATVQTEELLSS
>RPB_1471 Phasin 2 protein
MADSNDPFSTVMPFQLPEQVRAFAEKGVSQARESYSKLRDVAETNNGAIE
AVFSSASKGATDYSTKVFDFVKTNTSANFDFAHSLFGAKTLPEIMEMWTS
HAKKQVEVLTSQTKELTELSQKVAAETVEPIKASASKMFTPAG
>RPB_3323 DNA mismatch endonuclease vsr
MGISRSENMRRIRSKDTAPEMVVRRLVHGMGYRYRLHRKDIPGKPDLALL
SRKKAILVHGCFWHQHPGCREGRPPKSNREYWLPKLKRNQDRDRAALVNL
ADLGWRVLVVWECETKDAVVLRERLETFLEQPERVHPFAG
>RPB_4258 Excinuclease ABC, C subunit-like
MGIYVYMLHCSDGSYYVGSATGDDLSARIDQHNAGAFPGYTFVRRPVTLV
WSQHFDRITDGIAAERQIKGWGRAKKEALARSDWDGVQQLARRRGGKPAR
>RPB_2889 DNA-3-methyladenine glycosylase
MMSSRVSAPAPGALGPPLRRRFFARSVHEVAPELIGATLLVEGVGGVIVE
VEAYHHTDPAAHSYGGQTARNAVMFGPPGFAYVYRSYGIHWCVNVVCEAE
GSASAVLIRALQPTHGVEAMRARRGLDDARSLCSGPGKLAQALGISIAHN
GLPLDAPPFAIHRRIGEPDIVTGPRIGITKAADYPWRFGLKGSRFVSVPF
K
>RPB_3246 conserved hypothetical protein
MSGSFDRYVSFKNSNWEVRSERVMARLQKHIDAAENPFWAYFAQKRIELR
EKQGLDDLRVLHNYLPTLRELLEDNGDLETLAMLEELEVTLM
>RPB_1083 phage SPO1 DNA polymerase-related protein
MTPEPAPSLKQLLAFYLEAGVDCALTDEPINRMLDDETATPAIADAPVAR
ADTIRPPAPRPTALPGVAPPSPEAAIVSAREAAATAPTLEALRALMEQFE
GCALRSTATRLVFADGNPQARLMLVGEAPGREEDIEGLPFVGRSGKLLDL
MLAAIGLDRSQVYIANVIPWRPPGNRTPTPQETQICLPFIKRQIELVNPA
ILVTLGNPSTQTLLSTRDGITRTRGRWFDYDNGTRMIRAMPTLHPAYLLR
QPTYKRLAWQDLRAIATALAASESPAD
>RPB_2962 single-stranded-DNA-specific exonuclease RecJ
MTLPASALPPDPVSAFLGVTRSATGKLWRDRLDARGTAKAQAIAQRYQLP
EMLARVIAGRGIEIDAVADFLDPTIRKLMPDPSTVTQMEAGASRIADAAT
KREKVAIFGDYDVDGATSAALLAWHLRHCGLDPLIHIPDRIFEGYGPNVD
AIRMLADKGATLLITVDCGTTSLEPLAEARRLGMSVVVIDHHQTADELPE
VDALINPNRPDDLSGLGHLAAVGLVMMTLVAVNRELRHRGFWTLERPEPN
LLDMLHHVALGTVADVAPLIGLNRAFVAKGLIALRRRDHVGHTALMDVAR
LNGPPEVWHLGFMLGPRINAGGRIGRADLGVRLLLEGDVSEAARIAAELD
RLNTERRVIEQHAEAQAEAEAIAALGLEDKGAVIVTASEGWHPGVVGLVA
SRLKEKFGRPAFAIALEPGGIGTGSGRSIGGVDLGRAVRNAVTEGILMKG
GGHAMAAGVTLRKERLAEFRGWLETALAADVAKSRHVNELSIDGAVSARG
ITPEFAATLNRAGPFGAGNPEPVIALPAHQLVYADEVGQAHLRLRFKSGD
GAIVNGIAFRSVGQKLGQALAENRGHPLHVAGSLAIDRWQGAERVQFRVI
DVAVPDPGPAMIR
>RPB_2538 hypothetical protein
MTLRPKLVLPTPQRSARPVRWAFDDAARLCLLGEQFNCIETNERGCILEY
TTRTSPNGQPLTLPITWDELDALERDGAFTFERKGYSLEQSRKMLRAGAR
RMRDLPKKQRETIAWKRMLIERFCQLQAQGLATMSEASIRNALEIIQSTL
CREAEETKAKKGAQAGSEIITLRRMPHPSTLVRWLKKMPDTSKESAMTLM
DGRCNSGNFIPRFNVDETAILFRCARAFLMKEKPSIASTNTMMRIEFRKV
NAERRRKHLPDLKIPSEKKLRDVIGSFTAIETAAGREGLDEAVNLFRPCS
GGVQDLVRPLQRVEVDGWKIHLYMIAVAIGLWDHFPEDLRNAMKPLRMWL
TAALCCTTRCYVGLWISKTVDAASTLQALRMIFTDKTALASSFGATTPWE
YRGTPELMVFDTGSENYNEDVVAALTDLRIPFLFPQTSAPSARGRIERSH
RTLDQKLISNLCGRAMPVQMRKQYEGEARACITVDEAVKVILRYIVDGYH
NTPHAGLGGQTPRSKWLDVSLEFGVPRCPDIHELRLALGVEREARMQASG
ILVLGNWYRSPEQHALFQKIRNAPVRTRYDRENLGWISLQLDDVSWATVP
GPAWMRGVNADTWMAARTDLQRRFKIEAQMTEPIVLDAIAAALEVDREAR
GRRGIIDSPLTQDMLDAVQARTLAGIAWTDDNAVPAQRPTGLFAGTIPVG
TAATGAPDEQDRQRGSTPTSGGPTQPASAKPSYKPPKRAARETPPTPTKP
KPVRSWTKRDTE
>RPB_0841 Transposase IS116/IS110/IS902
MTASPSSDNIFIGIDVGGASLDVAWHRGGRAHYANRPDAIAELVQRLVAG
PQLTRIAVEPTGGYEKPLVKALRQAGLPVEIVHTSRFAAYRTLIGQKAKS
DTSDARLLAAYAASPDEIRGRKSDHVELEENPVREALHECASRRDQLKQM
IHAESCRLATTRLAEIRQAIEQHLDMLRAEDKLLQQRMQTLLRQSADLIA
AQRLLTTIKGIGVTSATTLIAMVPELGRVDNKAAAALVGVAPFVRQSGTM
TAPARIRGGRAAVRHILYMAAVAASRHNKILRPFYERLIADGKPVKVALI
AVLRRLVVFANAVLRSGQPWKGASLT
>RPB_0921 hypothetical protein
MTEDDCRAVLERIRWPNGPECPHCGVGSPSVVAIAGKSHRPGLYLCSACR
RQFTVTVGTPLEGTKLPLKLWIGAAHLLNSHQPIAVREIERALGVTYKTA
WKVVQRLLAGVKNYEGPLRVFGEPVRAHLRPLRPDDRNTLPAWRRVQRKM
MRGNYRAPRVPTALGALPAQFFPLATRAHLERTECFICWIIGVGKDEAAD
SGRH
>RPB_1323 conserved hypothetical protein
MITIPALAADALGGFLGDYMRRRYGASEAHLAEVVPSVARMTLECIGNSD
ALYHNVEHTMLVTLAGHHILRGRALYTHVPAEDYAHLIIGCLTHDIGYVR
GLFEADGEDGYVIDAGGRKKTLPRGASDASMLPWHVDRSKLFVTQRIGAI
AGLDAARIACAIEGTRFPPQVPADGEQCGEDAALLRAADLIGQLGDPAYI
RKANALYYEFEESGLNRRLGYGSPADLINLYPQFYWNSVAPHVQTAIRYL
NATAGGQQWIASLYSNVFRAERDIRLSGPQK
>RPB_2850 transcription-repair coupling factor
MKAPSRSPAELLAPGKALTFANVAEGAEGLIVSDLARAIAARPKPPAVSL
AVICRDGPRMQQLERSLEFFAPDVGVMQFPAWDCQPYDRVSPHAGILAQR
VTTLARLSRLAGSDKPLIVLTTVNAAVQRVPAREVIAAQALSVAPGNIVP
MDSIAAWLEHNGYSRASTVREPGEYAVRGGILDLFPAGLEQPVRFDFFGD
QLESIRTFDAETQRTLHTMRGLDLVPVSEFQLVTETIRRFRMGYVAAFGA
PDRDDQLYTSISEGRRHPGMEHWLPLFQERMDALFDYLPGTPVAIEPQSE
DAARERFKQIADYYDARREAMEHPGSGAIYKPLPPDQLYLTEAEWTARLQ
GISLARLTPFDVPDDGSSVIDAGARAGRNFAPERADTSVNVFQALVAHVQ
ALQAARKKVVIALWSEGSRDRMASMLKDHKLVHLTSVNSWRTVQATPRNE
AMLAVVGLESGFETDAFAVITEQDVLGDRLVRQRKSAKKLDNFISEVTSL
SSGDIVVHVEHGIGRFIGLQTLEVGGAPHDCVELHYANDTKLFLPVENIE
LLSRYGSDGTSVELDRLGGGGWQARKAKLKNRIRQIAGELIKVAAERHLR
EAPKLHVEPHLYDEFCARFPYEETEDQLAAINAALGDLERGMPMDRLVCG
DVGFGKTEVALRAAFAVALDGKQVAVVVPTTLLARQHAKTFTERFRGFPV
NVGQASRLVSPKELTQVKKGLAEGQIDIVVGTHALLGKGIKFKDLGLVVV
DEEQHFGVTHKEKLKQLRSEVHVLTLSATPIPRTLQLAMTGVRDLSIIAS
PPVDRLAVRTFVAPHDPLMIREALLRERYRGGQAFYVVPRIDDLAEVKDF
LDKHVPEMKVAVAHGQMPPTVIEDIMSAFYDAKYDILLSTTIVESGLDIP
NANTLIVHRADMFGLAQLYQLRGRVGRSKLRAYALFTLPQHNITAQAERR
LKVLQSLETLGAGFQLASHDLDIRGAGNLLGEEQSGHIKEVGFELYQQML
EEAITNLKAGVSEPVADRWSPQITVGMPVLIPEDFVKDLSVRLSLYRRLA
DLDSDEEIENFAAELRDRFGVLPDEVRYLFKVAAIKAYCRHANVEKVDAG
PKGVVITFRDNAFAHPDRLVTFIRRHGDAAKVRPDMKVVFFQVWKTPEER
LVGTTEIMRQLAELAEAKKAA
>RPB_0179 DEAD/DEAH box helicase
MPFSTTLPPLARALAERHYSEATPVQSAVLAPDAAGRDLLVSAQTGSGKT
VAYGLAIAPDLLGEAERFEPAAAPLALIVAPTRELALQVHRELGWLYGAT
GARVVSCVGGMDPRREQRELAEGAHIVVGTPGRLCDHLRRNRLDVSQLKA
VVLDEADEMLDLGFREDMEFILKTTPDSRRTLLFSATLPRGIIALAKTYQ
HNAFRVEVAGREGGHADIEYRAIRIAPNDVEHAVVNTLRYVESPTAIVFC
ATRSGVTHLQTALLERGFSVVALSGELTQNERTNALNALRDGRARVCVAT
DVAARGIDLPNLGLVIHADLPNDPEVMQHRSGRTGRAGKKGISVLLVPPA
RRRRAESLLGLAGIEAIWGTAPQADEIRVLDQQRMMQDALFTEETTPDDQ
ALAQALLAERSAEEIAVALARLYRARLPAPEDILDPGERPARGRDDRAPA
KGARAPREERDYGPRDPGSRARPGKAGQKHAITDGVWFRAAIGKRKNAEA
RWLLPMICRRGGIDRQAIGAIRILDTTTEFEIAAAAAVDFAAQIKRPDKD
DNIRIEPLIGAKPIEAGAERALSKPHGGQLSERETRRSKRPDSWSPQIEP
LADPRPPRAGKDAGFKDAGFKKKQVFKKDGFKPEGFKQDGLKTKKSRDDK
PAYVSKARRADPSAPNPGFKKKPKKKFRD