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2024-05-19 21:07:07

Gene list

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COG category: Replication, recombination and repair
Organism: Rhodopseudomonas palustris HaA2, HaA2

Number of genes found: 140

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Rhodopseudomonas palustris HaA2, HaA2
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
NA RPB_4272 crossover junction endodeoxyribonuclease RuvCRecName: Full=Crossover junction endodeoxyribonuclease RuvC; EC=3.1.22.4; AltName: Full=Holliday junction nuclease RuvC; AltName: Full=Holliday junction resolvase RuvC; chromosome CDS4855962 597 - 0.681742
NA RPB_2410 DNA-directed DNA polymeraseRecName: Full=DNA polymerase IV; Short=Pol IV; EC=2.7.7.7; chromosome CDS2763188 1290 - 0.692248
NA RPB_3531 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS4041591 408 + 0.639706
NA RPB_2713 single-strand binding proteinRecName: Full=Single-stranded DNA-binding protein; chromosome CDS3097524 504 - 0.652778
NA RPB_4195 NUDIX hydrolaseSubName: Full=NUDIX hydrolase; chromosome CDS4767943 489 - 0.668712
NA RPB_1116 DNA-3-methyladenine glycosylase ISubName: Full=DNA-3-methyladenine glycosylase I; EC=3.2.2.20; chromosome CDS1285342 654 - 0.663609
NA RPB_0005 DNA gyrase, B subunitRecName: Full=DNA gyrase subunit B; EC=5.99.1.3; chromosome CDS5462 2442 + 0.660115
NA RPB_2605 Uracil-DNA glycosylase superfamilySubName: Full=Uracil-DNA glycosylase superfamily; chromosome CDS2989033 603 - 0.674959
NA RPB_2570 Histone-like DNA-binding proteinSubName: Full=Histone-like DNA-binding protein; chromosome CDS2953002 312 - 0.653846
NA RPB_1630 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1836666 207 - 0.647343
NA RPB_1701 2OG-Fe(II) oxygenaseSubName: Full=DNA-N1-methyladenine dioxygenase; EC=1.14.11.-; chromosome CDS1935485 672 + 0.677083
NA RPB_0668 DNA polymerase III, subunits gamma and tauSubName: Full=DNA polymerase III, subunits gamma and tau; EC=2.7.7.7; chromosome CDS751755 1884 - 0.68949
NA RPB_1636 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1844892 339 + 0.59292
NA RPB_0190 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS210211 1677 + 0.626118
NA RPB_0638 integration host factor, beta subunitRecName: Full=Integration host factor subunit beta; Short=IHF-beta; chromosome CDS722757 306 - 0.640523
NA RPB_4459 exodeoxyribonuclease VII, small subunitRecName: Full=Exodeoxyribonuclease 7 small subunit; EC=3.1.11.6; AltName: Full=Exodeoxyribonuclease VII small subunit; Short=Exonuclease VII small subunit; chromosome CDS5048004 252 + 0.678571
NA RPB_3478 ISSpo8, transposaseSubName: Full=ISSpo8, transposase; chromosome CDS3983587 945 - 0.578836
NA RPB_3332 NUDIX hydrolaseSubName: Full=NUDIX hydrolase; chromosome CDS3812813 717 - 0.670851
NA RPB_2889 DNA-3-methyladenine glycosylaseRecName: Full=Putative 3-methyladenine DNA glycosylase; EC=3.2.2.-; chromosome CDS3289286 606 + 0.706271
NA RPB_0471 putative patch repair proteinSubName: Full=Putative patch repair protein; chromosome CDS519284 420 - 0.647619
NA RPB_2421 DNA processing protein DprA, putativeSubName: Full=DNA processing protein DprA, putative; chromosome CDS2775650 1137 - 0.720317
NA RPB_2898 exodeoxyribonuclease IIISubName: Full=Exodeoxyribonuclease III; chromosome CDS3299593 855 - 0.677193
NA RPB_4651 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS5260921 513 - 0.631579
NA RPB_0813 HhH-GPDSubName: Full=HhH-GPD; chromosome CDS930040 723 - 0.701245
NA RPB_3323 DNA mismatch endonuclease vsrSubName: Full=T/G mismatch-specific endonuclease; EC=3.1.-.-; chromosome CDS3802018 423 - 0.567376
NA RPB_0533 Tyrosine recombinase XerDRecName: Full=Tyrosine recombinase XerD; Flags: Precursor; chromosome CDS599413 1044 - 0.706897
NA RPB_2962 single-stranded-DNA-specific exonuclease RecJSubName: Full=Exonuclease RecJ; EC=3.1.-.-; chromosome CDS3372757 1842 - 0.698154
NA RPB_2482 DNA polymerase III chi subunit, HolCSubName: Full=DNA polymerase III, chi subunit; EC=2.7.7.7; chromosome CDS2841053 453 + 0.646799
NA RPB_0505 ATP-dependent helicase HrpBSubName: Full=ATP-dependent helicase HrpB; chromosome CDS565325 2613 + 0.718714
NA RPB_4269 Holliday junction DNA helicase RuvBRecName: Full=Holliday junction ATP-dependent DNA helicase RuvB; EC=3.6.4.12; chromosome CDS4853385 1047 - 0.69341
NA RPB_2008 DNA ligase, NAD-dependentRecName: Full=DNA ligase; EC=6.5.1.2; AltName: Full=Polydeoxyribonucleotide synthase [NAD(+)]; chromosome CDS2283424 2145 + 0.671329
NA RPB_1859 exodeoxyribonuclease VII, large subunitRecName: Full=Exodeoxyribonuclease 7 large subunit; EC=3.1.11.6; AltName: Full=Exodeoxyribonuclease VII large subunit; chromosome CDS2123791 1617 - 0.703772
NA RPB_4617 ATP dependent DNA ligaseSubName: Full=ATP dependent DNA ligase; chromosome CDS5217870 1869 + 0.682183
NA RPB_2620 DNA topoisomerase IV, A subunitRecName: Full=DNA topoisomerase 4 subunit A; EC=5.99.1.3; AltName: Full=Topoisomerase IV subunit A; chromosome CDS3001661 2262 + 0.64412
NA RPB_0398 DNA polymerase III, epsilon subunitSubName: Full=DNA polymerase III, epsilon subunit; EC=2.7.7.7; chromosome CDS442905 696 + 0.662356
NA RPB_1081 Ribonuclease HRecName: Full=Ribonuclease HII; Short=RNase HII; EC=3.1.26.4; chromosome CDS1240599 855 + 0.707602
NA RPB_0263 NUDIX hydrolaseSubName: Full=NUDIX hydrolase; chromosome CDS296719 495 + 0.660606
NA RPB_0628 conserved hypothetical proteinSubName: Full=DNA helicase/exodeoxyribonuclease V, subunit B; EC=3.1.11.5; chromosome CDS709131 3147 + 0.703845
NA RPB_4201 RelB antitoxinSubName: Full=RelB antitoxin; chromosome CDS4773965 366 + 0.614754
NA RPB_0921 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1064859 615 + 0.57561
NA RPB_0179 DEAD/DEAH box helicaseSubName: Full=DEAD/DEAH box helicase; chromosome CDS193912 2040 - 0.693627
NA RPB_1083 phage SPO1 DNA polymerase-related proteinSubName: Full=Phage SPO1 DNA polymerase-related protein; chromosome CDS1243046 834 - 0.701439
NA RPB_2193 DNA-cytosine methyltransferaseSubName: Full=DNA-cytosine methyltransferase; chromosome CDS2486279 1077 + 0.539461
NA RPB_4271 Holliday junction DNA helicase RuvARecName: Full=Holliday junction ATP-dependent DNA helicase RuvA; EC=3.6.4.12; chromosome CDS4855064 669 - 0.686099
NA RPB_2758 exodeoxyribonuclease IIISubName: Full=Exodeoxyribonuclease III; EC=3.1.11.2; chromosome CDS3145271 831 + 0.624549
NA RPB_1438 Endonuclease/exonuclease/phosphataseSubName: Full=Endonuclease/exonuclease/phosphatase; chromosome CDS1626988 1125 - 0.615111
NA RPB_0841 Transposase IS116/IS110/IS902SubName: Full=Transposase IS116/IS110/IS902; chromosome CDS956435 981 - 0.658512
NA RPB_3325 DNA-cytosine methyltransferaseSubName: Full=DNA-cytosine methyltransferase; EC=2.1.1.37; chromosome CDS3803548 1317 - 0.564161
NA RPB_0088 SNase-like nucleaseSubName: Full=SNase-like nuclease; chromosome CDS94073 579 + 0.70639
NA RPB_0670 NUDIX hydrolaseSubName: Full=NUDIX hydrolase; chromosome CDS754531 933 + 0.663451
NA RPB_0923 Resolvase-likeSubName: Full=Resolvase-like; chromosome CDS1066658 705 - 0.64539
NA RPB_2985 DEAD/DEAH box helicaseSubName: Full=DEAD/DEAH box helicase; chromosome CDS3399339 1551 + 0.703417
NA RPB_3246 conserved hypothetical proteinRecName: Full=N(2)-fixation sustaining protein CowN; AltName: Full=CO weal-nitrogenase; chromosome CDS3708940 279 + 0.562724
NA RPB_1775 Nucleoside diphosphate pyrophosphataseSubName: Full=Nucleoside diphosphate pyrophosphatase; chromosome CDS2036487 639 + 0.719875
NA RPB_1876 ATP dependent DNA ligase, centralSubName: Full=ATP dependent DNA ligase, central; chromosome CDS2138794 2745 + 0.666302
NA RPB_0260 NUDIX hydrolaseRecName: Full=RNA pyrophosphohydrolase; EC=3.6.1.-; AltName: Full=(Di)nucleoside polyphosphate hydrolase; chromosome CDS293834 504 + 0.642857
NA RPB_4132 DNA primaseRecName: Full=DNA primase; EC=2.7.7.-; chromosome CDS4705991 2052 - 0.68616
NA RPB_2023 UvrD/REP helicaseSubName: Full=ATP-dependent DNA helicase, Rep family; chromosome CDS2299877 2538 - 0.663121
NA RPB_2716 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS3102645 1248 - 0.525641
NA RPB_2978 DNA topoisomerase IV, B subunitRecName: Full=DNA topoisomerase 4 subunit B; EC=5.99.1.3; AltName: Full=Topoisomerase IV subunit B; chromosome CDS3389820 2055 + 0.663747
NA RPB_0472 DNA-cytosine methyltransferaseSubName: Full=DNA-cytosine methyltransferase; EC=2.1.1.37; chromosome CDS519700 1173 - 0.657289
NA RPB_4639 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS5244587 438 + 0.655251
NA RPB_0439 endonuclease IIIRecName: Full=Endonuclease III; EC=4.2.99.18; AltName: Full=DNA-(apurinic or apyrimidinic site) lyase; chromosome CDS482003 765 + 0.658824
NA RPB_0800 methylated-DNA--protein-cysteinemethyltransferaseSubName: Full=Methylated-DNA--protein-cysteine methyltransferase; chromosome CDS897297 579 - 0.708117
NA RPB_2429 Holliday junction resolvase YqgFRecName: Full=Putative Holliday junction resolvase; EC=3.1.-.-; chromosome CDS2786266 483 - 0.6853
NA RPB_4146 excinuclease ABC, B subunitRecName: Full=UvrABC system protein B; Short=Protein UvrB; AltName: Full=Excinuclease ABC subunit B; chromosome CDS4721591 3054 + 0.672888
NA RPB_0528 DNA mismatch repair protein MutSRecName: Full=DNA mismatch repair protein MutS; chromosome CDS589261 2736 + 0.696637
NA RPB_1952 Protein of unknown function DUF1568SubName: Full=Uncharacterized protein; chromosome CDS2217955 537 + 0.631285
NA RPB_1323 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1510030 846 - 0.680851
NA RPB_3125 Phage integraseSubName: Full=Phage integrase; chromosome CDS3558855 1095 - 0.586301
NA RPB_1059 NUDIX hydrolaseSubName: Full=NUDIX hydrolase; chromosome CDS1214362 588 + 0.712585
NA RPB_0700 DNA repair protein RadCRecName: Full=UPF0758 protein RPB_0700; chromosome CDS786248 753 + 0.669323
NA RPB_4236 methylated-DNA--protein-cysteinemethyltransferaseSubName: Full=Methylated-DNA--protein-cysteine methyltransferase; chromosome CDS4811952 543 - 0.697974
NA RPB_2651 integration host factor, alpha subunitRecName: Full=Integration host factor subunit alpha; Short=IHF-alpha; chromosome CDS3030365 372 + 0.607527
NA RPB_1032 SNase-like nucleaseSubName: Full=SNase-like nuclease; Flags: Precursor; chromosome CDS1184980 741 + 0.677463
NA RPB_2701 UvrD/REP helicaseSubName: Full=UvrD/REP helicase; chromosome CDS3086282 2061 + 0.678797
NA RPB_4701 ATP-dependent DNA helicase, RecQSubName: Full=ATP-dependent DNA helicase RecQ; EC=3.6.1.-; chromosome CDS5321057 1857 + 0.680129
NA RPB_0004 DNA replication and repair protein RecFRecName: Full=DNA replication and repair protein RecF; chromosome CDS4098 1137 + 0.71504
NA RPB_1281 deoxyribonucleaseSubName: Full=Deoxyribonuclease; chromosome CDS1465530 1110 + 0.665766
NA RPB_2154 Transposase IS116/IS110/IS902SubName: Full=Transposase IS116/IS110/IS902; chromosome CDS2443985 981 - 0.658512
NA RPB_0926 Phage integraseSubName: Full=Phage integrase; chromosome CDS1068814 1353 - 0.584627
NA RPB_2364 Deoxyribodipyrimidine photolyaseSubName: Full=Deoxyribodipyrimidine photo-lyase type I; EC=4.1.99.3; chromosome CDS2718807 1464 - 0.697404
NA RPB_1471 Phasin 2 proteinSubName: Full=Phasin 2 protein; chromosome CDS1660620 432 + 0.627315
NA RPB_0029 NUDIX hydrolaseSubName: Full=NUDIX hydrolase; chromosome CDS27426 414 - 0.661836
NA RPB_2680 DNA polymerase III, delta prime subunitSubName: Full=DNA polymerase III, delta prime subunit; EC=2.7.7.7; chromosome CDS3061833 1041 + 0.706052
NA RPB_0001 chromosomal replication initiator protein DnaARecName: Full=Chromosomal replication initiator protein DnaA; chromosome CDS676 1419 + 0.668076
NA RPB_0420 Protein of unknown function UPF0102RecName: Full=UPF0102 protein RPB_0420; chromosome CDS463349 387 - 0.687339
NA RPB_0619 formamidopyrimidine-DNA glycosylaseRecName: Full=Formamidopyrimidine-DNA glycosylase; Short=Fapy-DNA glycosylase; EC=3.2.2.23; AltName: Full=DNA-(apurinic or apyrimidinic site) lyase MutM; Short=AP lyase MutM; EC=4.2.99.18; chromosome CDS698153 882 - 0.683673
NA RPB_0437 transcriptional regulator, AraC familySubName: Full=DNA-O6-methylguanine--protein-cysteine S-methyltransferase / Transcriptional regulator Ada / transcriptional regulator, AraC family; EC=2.1.1.63; chromosome CDS480510 897 - 0.701226
NA RPB_2491 conserved hypothetical proteinSubName: Full=Regulatory inactivation of DnaA Hda protein; chromosome CDS2848993 678 + 0.671091
NA RPB_1342 Ribonuclease HRecName: Full=Ribonuclease H; Short=RNase H; EC=3.1.26.4; chromosome CDS1528662 486 + 0.648148
NA RPB_3046 Phage integraseSubName: Full=Phage integrase; chromosome CDS3470661 1647 + 0.563449
NA RPB_0049 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS50507 924 + 0.658009
NA RPB_3564 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS4083820 1467 - 0.73756
NA RPB_0002 DNA polymerase III, beta subunitRecName: Full=DNA polymerase III subunit beta; EC=2.7.7.7; chromosome CDS2356 1119 + 0.661305
NA RPB_3717 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS4255713 258 - 0.51938
NA RPB_4176 DNA mismatch repair protein MutLRecName: Full=DNA mismatch repair protein MutL; chromosome CDS4747341 1794 - 0.698439
NA RPB_2538 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS2904510 2289 - 0.671472
NA RPB_1070 A/G-specific adenine glycosylaseSubName: Full=A/G-specific DNA-adenine glycosylase; EC=3.2.2.-; chromosome CDS1229206 1074 + 0.716946
NA RPB_3306 Phage integraseSubName: Full=Phage integrase; chromosome CDS3780879 1353 + 0.5898
NA RPB_1793 DEAD/DEAH box helicaseSubName: Full=DEAD/DEAH box helicase; chromosome CDS2052451 1476 - 0.689024
NA RPB_2876 DNA gyrase, A subunitRecName: Full=DNA gyrase subunit A; EC=5.99.1.3; chromosome CDS3272113 2778 - 0.646508
NA RPB_2324 AAA_5 ATPaseSubName: Full=Recombination protein MgsA; chromosome CDS2673054 1335 + 0.689139
NA RPB_2416 NUDIX hydrolaseSubName: Full=NUDIX hydrolase; chromosome CDS2768633 759 - 0.689065
NA RPB_2615 DNA repair protein RecORecName: Full=DNA repair protein RecO; AltName: Full=Recombination protein O; chromosome CDS2998028 750 + 0.681333
NA RPB_4628 SNase-like nucleaseSubName: Full=SNase-like nuclease; Flags: Precursor; chromosome CDS5229937 729 + 0.672154
NA RPB_1194 NUDIX hydrolaseSubName: Full=NUDIX hydrolase; chromosome CDS1370308 666 + 0.63964
NA RPB_2419 DNA topoisomeraseRecName: Full=DNA topoisomerase 1; EC=5.99.1.2; AltName: Full=DNA topoisomerase I; chromosome CDS2772217 2736 - 0.661184
NA RPB_4107 hypothetical proteinSubName: Full=Uncharacterized protein; Flags: Precursor; chromosome CDS4677176 804 - 0.640547
NA RPB_2850 transcription-repair coupling factorRecName: Full=Transcription-repair-coupling factor; Short=TRCF; EC=3.6.4.-; chromosome CDS3245221 3516 - 0.665813
NA RPB_0271 Phage integraseRecName: Full=Tyrosine recombinase XerC; chromosome CDS306126 1056 + 0.695076
NA RPB_3860 serine/threonine protein kinaseSubName: Full=Serine/threonine protein kinase; chromosome CDS4414760 1461 - 0.678987
NA RPB_4524 Phage integraseRecName: Full=Tyrosine recombinase XerC; chromosome CDS5112589 933 + 0.66881
NA RPB_0666 recombination protein RecRRecName: Full=Recombination protein RecR; chromosome CDS750696 606 - 0.686469
NA RPB_0379 exodeoxyribonuclease IIISubName: Full=Exodeoxyribonuclease III; chromosome CDS420707 813 + 0.649446
NA RPB_0364 conserved hypothetical proteinSubName: Full=Uncharacterized protein; Flags: Precursor; chromosome CDS406149 366 - 0.666667
NA RPB_3563 DNA polymerase III, alpha subunitRecName: Full=Error-prone DNA polymerase; EC=2.7.7.7; chromosome CDS4080171 3498 - 0.668954
NA RPB_0629 UvrD/REP helicaseSubName: Full=DNA helicase/exodeoxyribonuclease V, subunit A; EC=3.1.11.5; chromosome CDS712274 3486 + 0.689902
NA RPB_2601 DNA polymerase III, alpha subunitSubName: Full=DNA polymerase III, alpha subunit; EC=2.7.7.7; chromosome CDS2983527 3456 + 0.671875
NA RPB_0387 DNA polymerase III, delta subunitSubName: Full=DNA polymerase III, delta subunit; EC=2.7.7.7; chromosome CDS429782 1029 + 0.701652
NA RPB_2458 replicative DNA helicaseSubName: Full=Primary replicative DNA helicase; EC=3.6.1.-; chromosome CDS2814512 1497 - 0.641283
NA RPB_1172 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1346293 564 + 0.684397
NA RPB_4258 Excinuclease ABC, C subunit-likeSubName: Full=Excinuclease ABC, C subunit-like; chromosome CDS4844127 303 + 0.656766
NA RPB_2852 DEAD/DEAH box helicaseSubName: Full=ATP-dependent DNA helicase RecG; EC=3.6.1.-; chromosome CDS3249096 2187 + 0.6877
NA RPB_2682 TatD-related deoxyribonucleaseSubName: Full=TatD-related deoxyribonuclease; Flags: Precursor; chromosome CDS3064497 798 + 0.669173
NA RPB_1917 ErfK/YbiS/YcfS/YnhGSubName: Full=ErfK/YbiS/YcfS/YnhG; Flags: Precursor; chromosome CDS2190834 1221 + 0.68878
NA RPB_4339 NUDIX hydrolaseSubName: Full=NUDIX hydrolase; chromosome CDS4924655 627 - 0.701754
NA RPB_3741 recA proteinRecName: Full=Protein RecA; AltName: Full=Recombinase A; chromosome CDS4281654 1095 - 0.644749
NA RPB_0548 helicaseSubName: Full=Helicase; chromosome CDS615831 3438 + 0.698662
NA RPB_0270 primosomal protein N'SubName: Full=Replication restart DNA helicase PriA; chromosome CDS303801 2208 - 0.689312
NA RPB_2534 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS2899276 1692 - 0.59279
NA RPB_2007 DNA repair protein RecNRecName: Full=DNA repair protein RecN; AltName: Full=Recombination protein N; chromosome CDS2281414 1686 + 0.710558
NA RPB_0848 DNA polymerase ISubName: Full=DNA polymerase I; EC=2.7.7.7; Flags: Precursor; chromosome CDS965253 3099 - 0.665053
NA RPB_3319 SNase-like nucleaseSubName: Full=SNase-like nuclease; Flags: Precursor; chromosome CDS3797782 477 + 0.649895
NA RPB_2354 NUDIX hydrolaseSubName: Full=NUDIX hydrolase; chromosome CDS2704536 795 + 0.659119
NA RPB_2715 excinuclease ABC, A subunitRecName: Full=UvrABC system protein A; Short=UvrA protein; AltName: Full=Excinuclease ABC subunit A; chromosome CDS3099548 3036 + 0.656126
NA RPB_1073 DNA methylase N-4/N-6SubName: Full=DNA adenine methylase CcrM; chromosome CDS1232526 1134 - 0.650794
NA RPB_1177 excinuclease ABC, C subunitRecName: Full=UvrABC system protein C; Short=Protein UvrC; AltName: Full=Excinuclease ABC subunit C; chromosome CDS1349728 2088 - 0.679119
NA RPB_1080 Radical SAMSubName: Full=Radical SAM; chromosome CDS1239310 1161 + 0.657192
NA RPB_1901 Excinuclease ABC, C subunit-likeSubName: Full=Excinuclease ABC, C subunit-like; chromosome CDS2175881 282 - 0.677305